Psyllid ID: psy8681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| Q9BZJ0 | 848 | Crooked neck-like protein | yes | N/A | 0.673 | 0.413 | 0.385 | 1e-78 | |
| P63155 | 690 | Crooked neck-like protein | yes | N/A | 0.669 | 0.505 | 0.386 | 1e-77 | |
| P63154 | 690 | Crooked neck-like protein | yes | N/A | 0.669 | 0.505 | 0.386 | 1e-77 | |
| P17886 | 702 | Protein crooked neck OS=D | yes | N/A | 0.612 | 0.454 | 0.400 | 1e-76 | |
| Q4WT84 | 676 | Pre-mRNA-splicing factor | yes | N/A | 0.652 | 0.502 | 0.350 | 3e-52 | |
| Q5BDX1 | 673 | Pre-mRNA-splicing factor | yes | N/A | 0.652 | 0.505 | 0.341 | 2e-51 | |
| Q54XP4 | 705 | Crooked neck-like protein | yes | N/A | 0.642 | 0.475 | 0.320 | 1e-49 | |
| Q7SGD2 | 695 | Pre-mRNA-splicing factor | N/A | N/A | 0.652 | 0.489 | 0.313 | 4e-45 | |
| Q5K654 | 677 | Pre-mRNA-splicing factor | N/A | N/A | 0.443 | 0.341 | 0.391 | 2e-42 | |
| P0CO10 | 726 | Pre-mRNA-splicing factor | yes | N/A | 0.476 | 0.341 | 0.382 | 1e-40 |
| >sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/449 (38%), Positives = 242/449 (53%), Gaps = 98/449 (21%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE++ + + ARKVYERAVEFFG+E++DE L++AFAKFEE Q+E
Sbjct: 385 FEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 444
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEHERA------------------ 188
K+GDR GIED+IVSKR+FQYEE +A
Sbjct: 445 KQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 504
Query: 189 ------RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
R +Y+ A+ ++P + +K Y Y +E + + Y+ +
Sbjct: 505 AEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLEL 564
Query: 243 NPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIPP------------------- 279
P+ W Y + + N L R +I P
Sbjct: 565 IPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDR 624
Query: 280 -------------------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
KFAELE++LGD++RARAIYELAISQPRLDMPE++WK+YID
Sbjct: 625 CRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYID 684
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380
FE+ Q E ++ R L+ RLL+RT HVKVW+++AQFE+SSG E S++ R+++E AN+ ++
Sbjct: 685 FEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRN 744
Query: 381 SSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDY 440
EKEER+MLLE+W+ FE + G + +++ +P + KKR K D+G + GWEE FDY
Sbjct: 745 CEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDY 804
Query: 441 IFPEDEAAKPNLKLLEKAKAWKKAMEEKQ 469
IFPED A +PNLKLL AK WKK +EK+
Sbjct: 805 IFPEDAANQPNLKLLAMAKLWKKQQQEKE 833
|
Involved in pre-mRNA splicing process. Homo sapiens (taxid: 9606) |
| >sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 252/453 (55%), Gaps = 104/453 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE++ + + ARKVYERAVEFFG+E++DE L++AFAKFEE Q+E
Sbjct: 224 FEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 283
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEHERA------------------ 188
K+GDR GIED+IVSKR+FQYEE +A
Sbjct: 284 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 343
Query: 189 ------RVIYKYALDHIPK-------DRTAEIYKAYTIHE---------KKYGDRAGIED 226
R +Y+ A+ ++P R ++ Y ++E + +A +E
Sbjct: 344 AEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLE- 402
Query: 227 VIVSKRKFQYEE------------------------EVNSNPNNYDAWFDYLRLLEDEGN 262
++ +KF + + + P N + Y+ L
Sbjct: 403 -LIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLRE 460
Query: 263 ADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317
D R+ YE+ + P KFAELE++LGD+ERARAIYELAISQPRLDMPE++WK+
Sbjct: 461 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKS 520
Query: 318 YIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377
YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++AQFE+SSG E SV+ R+++E AN+
Sbjct: 521 YIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKT 580
Query: 378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV 437
++ EKEER+MLLE+W+ FE + G + +++ +P + KKR K D+G + GWEE
Sbjct: 581 MRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEY 640
Query: 438 FDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQG 470
+DYIFPED A +PNLKLL AK WKK +E++
Sbjct: 641 YDYIFPEDAANQPNLKLLAMAKLWKKQQQEREA 673
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May be involved in pre-mRNA splicing process. Rattus norvegicus (taxid: 10116) |
| >sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 252/453 (55%), Gaps = 104/453 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE++ + + ARKVYERAVEFFG+E++DE L++AFAKFEE Q+E
Sbjct: 224 FEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 283
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEHERA------------------ 188
K+GDR GIED+IVSKR+FQYEE +A
Sbjct: 284 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 343
Query: 189 ------RVIYKYALDHIPK-------DRTAEIYKAYTIHE---------KKYGDRAGIED 226
R +Y+ A+ ++P R ++ Y ++E + +A +E
Sbjct: 344 AEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLE- 402
Query: 227 VIVSKRKFQYEE------------------------EVNSNPNNYDAWFDYLRLLEDEGN 262
++ +KF + + + P N + Y+ L
Sbjct: 403 -LIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLRE 460
Query: 263 ADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317
D R+ YE+ + P KFAELE++LGD+ERARAIYELAISQPRLDMPE++WK+
Sbjct: 461 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKS 520
Query: 318 YIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377
YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++AQFE+SSG E SV+ R+++E AN+
Sbjct: 521 YIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKT 580
Query: 378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV 437
++ EKEER+MLLE+W+ FE + G + +++ +P + KKR K D+G + GWEE
Sbjct: 581 MRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEY 640
Query: 438 FDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQG 470
+DYIFPED A +PNLKLL AK WKK +E++
Sbjct: 641 YDYIFPEDAANQPNLKLLAMAKLWKKQQQEREA 673
|
Involved in pre-mRNA splicing process. Mus musculus (taxid: 10090) |
| >sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 238/474 (50%), Gaps = 155/474 (32%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
FEE +GF+ G+R+V+ERAVEFFG++ ++E+LFIAFA+FEEGQ+E
Sbjct: 219 FEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKE---------------- 262
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
H+RAR+IYKYALDH+PKDRT E++KAYT HEKKYGDRAGIEDVIVSKRK+QYE+
Sbjct: 263 ------HDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQ 316
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP--------------TKFAE 284
EV +NP NYDAWFDYLRL+E EG+ D IRETYERAI+N+PP +A
Sbjct: 317 EVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWINYAL 376
Query: 285 LESLLG-DMERARAIYELAI-----------------SQPRLDMPEL------------- 313
E L D ER R IY+ + +Q + EL
Sbjct: 377 YEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGM 436
Query: 314 -----VWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367
+++ YID E+ E ++ R L+E+ LE + WM +A+ E GD D A
Sbjct: 437 CPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDR---A 493
Query: 368 RRVFERANQALK----------------ASSEKE----------ERVMLLEAWKEFE--- 398
R +FE A Q + A E E ER ++ W F
Sbjct: 494 RAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKFE 553
Query: 399 --AQHGDDESRAKLNSKLPRR--------------------------------------- 417
HGD A+LN +L RR
Sbjct: 554 MGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWRDFERDASDSQEMQ 613
Query: 418 ---------AKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWK 462
KKR K +D GVEEGWEEVFDYIFPEDE A+PNLKLL AK WK
Sbjct: 614 KVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWK 667
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May be involved in pre-mRNA splicing process. Involved in neurogenesis. Drosophila melanogaster (taxid: 7227) |
| >sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 218/462 (47%), Gaps = 122/462 (26%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE+ G R+VY A+E GE+ +DEKLFIA+AKFE +E
Sbjct: 215 FEEEYGTSDLVREVYGMAIETLGEDFMDEKLFIAYAKFEAKLKEYERARAIYKYALDRLP 274
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEH--------------------- 185
++GDR G+EDVI+SKR+ QYEE
Sbjct: 275 RSKAMALHKAYTTFEKQFGDREGVEDVILSKRRVQYEEQLKENPRNYDVWFDFARLEETS 334
Query: 186 ---ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
+R R IY+ A+ IP + ++ Y Y +E V + + Y E +
Sbjct: 335 GDPDRVRDIYERAIAQIPPSQEKRHWRRYIYLWIFYAIWEEMEAKDVDRARQIYTECLKL 394
Query: 243 NPNNYDAWFDYLRLLEDE-----------------------------GNADL-------- 265
P+ F + LL+ + G DL
Sbjct: 395 IPHKKFT-FAKIWLLKAQFDIRQMDLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFV 453
Query: 266 -IRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYI 319
R YE+ I P K+AELE L D ERARAI+EL I QP LDMPELVWKAYI
Sbjct: 454 RCRTLYEKQIEWNPANSQSWIKYAELERGLDDSERARAIFELGIDQPMLDMPELVWKAYI 513
Query: 320 DFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSG----------------DEDS 363
DFE +GE D+VR+L+ERLL++T HVKVW+NYA+FE++ +++
Sbjct: 514 DFEEYEGEYDRVRQLYERLLQKTDHVKVWINYARFEINVPEEEEEEEEEEEEERPVSDEA 573
Query: 364 VSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVK 423
AR VFERA++ K KEERV LL AW+ FE HG E K+ ++PRR KKR K
Sbjct: 574 KRRARAVFERAHKVFKEKEMKEERVELLNAWRAFEHTHGSPEDIKKIEEQMPRRVKKRRK 633
Query: 424 TYNDEGVEEGWEEVFDYIFPEDEAAKPNL-KLLEKAKAWKKA 464
+D +EE DY+FP D+ A +L K+L+ A WK+
Sbjct: 634 LDDDR-----YEEYMDYVFPADDQAAASLTKILQAAHRWKQT 670
|
Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 213/457 (46%), Gaps = 117/457 (25%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE+ G R+VY AVE GE+ +DEKLFIA+A+FE +E
Sbjct: 215 FEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDRLP 274
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEH--------------------- 185
++GDR G+E+VI++KR+ QYEE
Sbjct: 275 RSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQS 334
Query: 186 ---ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
ER R +Y+ A+ IP + ++ Y Y +E + + + Y E +
Sbjct: 335 GDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKL 394
Query: 243 NPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------------- 281
P+ W + + N R+T +AI P K
Sbjct: 395 IPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVR 454
Query: 282 ---------------------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
+AELE L D ERARAIYEL I QP LDMPELVWKAYID
Sbjct: 455 CRTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYID 514
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD-------------EDSVSLA 367
FE +GE ++ R+L+ERLL++T HVKVW+NYA+FE++ D +++ A
Sbjct: 515 FEDDEGEYERERQLYERLLQKTDHVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRA 574
Query: 368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYND 427
R VFERA++ K KEERV LL AW+ FE HG E K+ ++PRR KKR K +D
Sbjct: 575 RAVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDD 634
Query: 428 EGVEEGWEEVFDYIFPEDEAAKPNL-KLLEKAKAWKK 463
+EE DY+FP D+ + NL KLL A WK+
Sbjct: 635 R-----YEEYMDYVFPADDQSAANLSKLLRMAHQWKQ 666
|
Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 227/474 (47%), Gaps = 139/474 (29%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE+ G + AR +++RA+EF GE+ DE+LFIAFAKFEE +E
Sbjct: 218 FEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVP 277
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEH--------------------- 185
++GDR GIEDV++ K++FQYEE
Sbjct: 278 KSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEIN 337
Query: 186 ---ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG----------DRAG--------- 223
E+ R IY+ ++ ++P + +K Y Y +RA
Sbjct: 338 GEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKL 397
Query: 224 -------------------IEDVIVSKRKFQYEEEVNSNPNNYDAWFD-YLRLLEDEGNA 263
I + + K + Y + + NP + FD Y+ L + GN
Sbjct: 398 IPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPKS--KIFDQYIHLEIELGNF 455
Query: 264 DLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAY 318
D +R YE+ + +P KFA+LE+ LG+ RARAI+ELAI QP LD PE+VWK +
Sbjct: 456 DRVRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAIQQPNLDRPEVVWKDF 515
Query: 319 IDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMS----------------SGDED 362
ID E+ + D V++L+ +LLE+T HVKVW+ + +F S GD +
Sbjct: 516 IDSEIQLKQFDFVKQLYRKLLEKTNHVKVWIGFIKFVHSIKDKQQQKQRQQQQEEDGDSN 575
Query: 363 SVSL--------------ARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRA 408
+ R +F A+++L ++S+KEER++LLE+WKEFE G+ E+
Sbjct: 576 TTKKDGGDDDNNDDINKPTREIFIEAHKSL-SNSDKEERLLLLESWKEFEQTFGNQETLN 634
Query: 409 KLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDE-AAKPNLKLLEKAKAW 461
++ K+P+R KR N G EE FDYIFPE+E + + +LKLLE A+ W
Sbjct: 635 QVLKKIPQRVIKRRSDGNG-----GIEEYFDYIFPEEEKSTQTSLKLLEAAQRW 683
|
Involved in pre-mRNA splicing. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 211/466 (45%), Gaps = 126/466 (27%)
Query: 119 FEEQNGFVSGARKVYERAV----EFFGEENLDEKLFIAFAKFEEGQRE------------ 162
FEE+ G R+V++ A+ E G++ +DE++FIAFA++E RE
Sbjct: 215 FEEEYGTSDTVREVFQTAIQTIAETLGDDAVDERIFIAFARYEARLREYERARAIYKFGL 274
Query: 163 --------------------KYGDRAGIEDVIVSKRKFQYEEH----------------- 185
++GD+ G+EDVI++KR+ YEE
Sbjct: 275 DNLPRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARL 334
Query: 186 -------ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
+R R +Y+ A+ +P + ++ Y Y E + + + Y+
Sbjct: 335 EESGGDVDRTREVYERAIAQVPPTQEKRHWRRYIFLFLFYAIWEERETKDIGRARQIYDT 394
Query: 239 EVNSNPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIPP--------------- 279
+N P+ W +G R+T RAI P
Sbjct: 395 CLNLIPHKKFTFAKVWVAKAHFEIRQGQLTTARKTLGRAIGMCPKDKIFKEYILLEQKLY 454
Query: 280 -----------------------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWK 316
K+AELE L D+ER RAI+ELA+SQP LDMPE+VWK
Sbjct: 455 EFERCRTLYEKHVMYNPANCQTWIKWAELERGLDDLERTRAIFELAVSQPILDMPEVVWK 514
Query: 317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDED-------------- 362
AYIDFE +GE ++ R L+ERLLE+ H KVW++YAQFE++ DE
Sbjct: 515 AYIDFEEEEGEYERTRALYERLLEKADHPKVWISYAQFEINIPDEAEEEEETEEEVEEKP 574
Query: 363 ----SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418
+ + AR++FERA++++K K ERV LL AW FE HG E K+ ++PR+
Sbjct: 575 VSEEAKARARKIFERAHKSMKERELKAERVSLLNAWLAFEKTHGSAEDIEKIQKQMPRKT 634
Query: 419 KKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNL-KLLEKAKAWKK 463
KK+ K +D WEE DYIFP D+ NL LL A AWK+
Sbjct: 635 KKKRKLEDD-----TWEEYVDYIFPADDQQTKNLSSLLAMANAWKQ 675
|
Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 158/291 (54%), Gaps = 60/291 (20%)
Query: 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247
AR +A+ PKD+ ++K Y E++ + V RK +E+++ +P+N
Sbjct: 422 ARKTLGHAIGACPKDK---LFKGYIDLERQLFE-------FVRCRKL-FEKQIEWSPSNC 470
Query: 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPR 307
AW KFAELE L D++RARAIYEL ISQP
Sbjct: 471 QAW-----------------------------IKFAELERGLDDIDRARAIYELGISQPV 501
Query: 308 LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMS---------- 357
LDMPEL+WK+YIDFE +GE D+ R L+ERLLE+T HVKVW+N+A+FE++
Sbjct: 502 LDMPELLWKSYIDFEEYEGEYDRTRALYERLLEKTNHVKVWINFARFEINIPEGEEEDED 561
Query: 358 ----SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413
E++ AR VFERA++ K KEERV LL AWK FE HG + AK+ +
Sbjct: 562 EEEKPVSEEAKRRARMVFERAHKVFKEKEMKEERVALLNAWKSFEQTHGSPDDIAKIERQ 621
Query: 414 LPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNL-KLLEKAKAWKK 463
+P + KKR K +D +EE DY+FP D+ + L ++L+ A WKK
Sbjct: 622 MPSKVKKRRKLDDDR-----YEEYLDYMFPADDESSAKLSQILQMAHKWKK 667
|
Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication. Paracoccidioides brasiliensis (taxid: 121759) |
| >sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 163/285 (57%), Gaps = 37/285 (12%)
Query: 184 EHERARVIYKYALDHIPKD--RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241
+++RAR +YK A+ +P A+++ AY E + D + V+ + +
Sbjct: 397 DYDRARDVYKAAVKLVPHKTFTFAKLWLAYAYFEIRRLDVSAARKVLGAGIG------MC 450
Query: 242 SNPNNYDAWFDY-LRLLEDEGNADLIRETYERAIANIPP-----TKFAELESLLGDMERA 295
P + + + +RL E D +R YE+ + P ++ ++ES + D ER
Sbjct: 451 PKPKLFTGYIELEMRLRE----FDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERV 506
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFE 355
RAI+ELA+ Q LDMPE+VWKAYIDFE G+GER++ R L+ERLLERT HVKVW++YA E
Sbjct: 507 RAIFELAVQQS-LDMPEIVWKAYIDFEAGEGERERARNLYERLLERTSHVKVWISYALME 565
Query: 356 MSS-------------GDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
+++ G+ LAR+VFER + L+A EKE+R +LLE+WK FE +HG
Sbjct: 566 IATLGGGEDEDGNEIEGEAGDADLARQVFERGYKDLRAKGEKEDRAVLLESWKSFEQEHG 625
Query: 403 DDESRAKLNSKLPRRAKKRVKTYNDEG-VEEGWEEVFDYIFPEDE 446
D+E+ AK+ LP K+ K + G +EE W D +FP+DE
Sbjct: 626 DEETLAKVEDMLPTTRKRWRKAEDGSGELEEYW----DLVFPDDE 666
|
Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| 357614027 | 536 | hypothetical protein KGM_05790 [Danaus p | 0.637 | 0.619 | 0.516 | 1e-104 | |
| 157123075 | 691 | crooked neck protein [Aedes aegypti] gi| | 0.662 | 0.499 | 0.447 | 7e-91 | |
| 91094535 | 671 | PREDICTED: similar to AGAP001879-PA [Tri | 0.662 | 0.514 | 0.433 | 3e-87 | |
| 312380118 | 698 | hypothetical protein AND_07846 [Anophele | 0.662 | 0.494 | 0.434 | 2e-86 | |
| 347966738 | 720 | AGAP001879-PA [Anopheles gambiae str. PE | 0.662 | 0.479 | 0.428 | 1e-85 | |
| 241730155 | 583 | crooked neck protein, putative [Ixodes s | 0.882 | 0.789 | 0.388 | 2e-85 | |
| 449671984 | 647 | PREDICTED: crooked neck-like protein 1 [ | 0.639 | 0.514 | 0.429 | 9e-83 | |
| 156549704 | 686 | PREDICTED: protein crooked neck-like [Na | 0.677 | 0.514 | 0.403 | 1e-80 | |
| 431894127 | 701 | Crooked neck-like protein 1 [Pteropus al | 0.698 | 0.519 | 0.402 | 3e-78 | |
| 326914759 | 686 | PREDICTED: crooked neck-like protein 1-l | 0.669 | 0.508 | 0.397 | 3e-78 |
| >gi|357614027|gb|EHJ68863.1| hypothetical protein KGM_05790 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/401 (51%), Positives = 267/401 (66%), Gaps = 69/401 (17%)
Query: 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168
D + ++ FEE +GF++ ARK++ERAVEFFG+E LDE+LFIAFAKFEE Q+E
Sbjct: 203 DVKHWIKYAKFEENHGFINSARKIFERAVEFFGDEELDERLFIAFAKFEENQKE------ 256
Query: 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI 228
H+RARVIYKYALDHIPKDR E+YKAYTIHEKKYGDR+GIEDVI
Sbjct: 257 ----------------HDRARVIYKYALDHIPKDRNKELYKAYTIHEKKYGDRSGIEDVI 300
Query: 229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL 288
KF + P N W KFAELE+L
Sbjct: 301 ----KF-----LEYGPENCVTWI-----------------------------KFAELETL 322
Query: 289 LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVW 348
LGD++RARAIYE+A+ QPRLDMPEL+WK+YIDFEV Q E DK R+L+ERLLERTVHVKVW
Sbjct: 323 LGDIDRARAIYEIAVGQPRLDMPELLWKSYIDFEVAQSETDKARQLYERLLERTVHVKVW 382
Query: 349 MNYAQFEMSSGDEDSVS--LARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406
++YA+FE+++ + D+++ LARRV+ERAN++LK++ EKE RV+LLEAWKEFE + D E
Sbjct: 383 LSYAKFELNAENPDNINTELARRVYERANESLKSAGEKESRVLLLEAWKEFETEIDDKEK 442
Query: 407 RAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAME 466
K+ +K+PRR KKR K ++ G+EEGWEEVFDYIFPEDE +PNLKLL AK W+K
Sbjct: 443 LEKVLAKMPRRVKKRQKIISEAGIEEGWEEVFDYIFPEDEMVRPNLKLLAAAKNWRK--- 499
Query: 467 EKQGNKIGEEGANKENEEEERDKERDREEEDEKKDERDRDS 507
++ + + E+ +E+ D +EED K+ + +S
Sbjct: 500 ----KQVVPDNSETESNDEQDKNSGDTQEEDPSKESANEES 536
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157123075|ref|XP_001653815.1| crooked neck protein [Aedes aegypti] gi|108874541|gb|EAT38766.1| AAEL009383-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 199/445 (44%), Positives = 260/445 (58%), Gaps = 100/445 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE +GF++GAR VYERA+EFFG++N DE+LFIAFAKFEEGQ+E
Sbjct: 219 FEEAHGFINGARSVYERAIEFFGDDNADERLFIAFAKFEEGQKEHDRVRVIYKYALDHLP 278
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEE---------------------- 184
KYGDR+GIEDVIVSKRKFQYE+
Sbjct: 279 KERTADLYKAYTIHEKKYGDRSGIEDVIVSKRKFQYEQEVAENPTNYDAWFDYLRLVENE 338
Query: 185 --HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
E R Y+ A+ ++P + +++ Y Y +E + + + Y+ +
Sbjct: 339 TNQEVIRETYERAIANVPPAKDKNLWRRYIYLWINYALYEELETEDLERTRQIYKTCLEL 398
Query: 243 NPNNY----DAWFDYLRLLEDEGNADLIRETYERAIANIP-------------------- 278
P+ W Y + N + R+T AI P
Sbjct: 399 IPHKVFTFSKIWLLYAQFEIRCKNLQVARKTLGMAIGMCPRDKLFRGYIDLEIQLREFDR 458
Query: 279 ------------P------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
P KFAELESLLGDM+RARAIYELAI QPRLDMPEL+WK+YID
Sbjct: 459 CRILYEKFLEFGPENCITWMKFAELESLLGDMDRARAIYELAIQQPRLDMPELLWKSYID 518
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVS--LARRVFERANQAL 378
FEV QGE D R+L+ERLLERT HVKVW+++A+FEM++ +ED+V+ L+RRV+ERAN +L
Sbjct: 519 FEVQQGEFDLARQLYERLLERTTHVKVWISFAKFEMAAENEDNVNVQLSRRVYERANDSL 578
Query: 379 KASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVF 438
K + EKE RV++LEAW++FE +HGD+ES K+ +K+PR+ KKR K ++ GVEEGWEEVF
Sbjct: 579 KNAVEKETRVLILEAWRDFEKEHGDEESLRKVMAKMPRKVKKRQKIISESGVEEGWEEVF 638
Query: 439 DYIFPEDEAAKPNLKLLEKAKAWKK 463
D+IFPEDE A+PNLKLL AK+WKK
Sbjct: 639 DFIFPEDEMARPNLKLLAAAKSWKK 663
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91094535|ref|XP_972454.1| PREDICTED: similar to AGAP001879-PA [Tribolium castaneum] gi|270000758|gb|EEZ97205.1| hypothetical protein TcasGA2_TC004395 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 255/443 (57%), Gaps = 98/443 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE +GF++ AR +YERAV F+G+++LDEKL+IAFA+FEE Q+E
Sbjct: 220 FEENHGFINSARLIYERAVHFYGDDHLDEKLYIAFARFEENQKEHDRARVIYKYALDHLP 279
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEH--------------------- 185
KYGDR+GIEDVIVSKRKFQYE+
Sbjct: 280 KEQAKELYKAYTIHEKKYGDRSGIEDVIVSKRKFQYEQEILENPTNYDAWFDYLRLVEGE 339
Query: 186 ---ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
E +R Y+ A+ ++P + + ++ Y Y IE V + + Y+ ++
Sbjct: 340 GDLETSRETYERAIANVPPTKNKQYWRRYIYLWINYALFEEIEAVDYERTRQVYKACLDL 399
Query: 243 NPNNY----DAWFDYLRLLEDEGNADLIRETYERAIANIP-------------------- 278
P+ W + + N R+ AI P
Sbjct: 400 IPHKLFTFSKIWLLFAQFEIRRKNLIGARKILGTAIGKCPRDKLFRGYIDIEIQLREFDR 459
Query: 279 ------------P------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
P KFAELE+LLGD ERARAIYELAI+QPRLDMPEL+WKAYID
Sbjct: 460 CRILYGKYLEFGPENCVTWMKFAELETLLGDFERARAIYELAIAQPRLDMPELLWKAYID 519
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380
FE+GQ E R+L+ERLLERT HVKVW++YA+FE+S + ++SLARRV+ERAN++LK+
Sbjct: 520 FEIGQEEWANARQLYERLLERTSHVKVWLSYAKFELSCESDMNISLARRVYERANESLKS 579
Query: 381 SSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDY 440
EKE RV+LLE WKEFE+ +G +E++ K+ K+PRR KKR K +++GVE+GWEE+FDY
Sbjct: 580 YGEKEARVLLLENWKEFESANGSEETKEKVEGKMPRRIKKRRKVIDEDGVEQGWEEIFDY 639
Query: 441 IFPEDEAAKPNLKLLEKAKAWKK 463
IFPEDEA+KPNLKLL AK+WKK
Sbjct: 640 IFPEDEASKPNLKLLAAAKSWKK 662
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312380118|gb|EFR26202.1| hypothetical protein AND_07846 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/446 (43%), Positives = 253/446 (56%), Gaps = 101/446 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE +GFV+G+R VYERAVEFFG+++ DE+LFIAFA+FEEGQ+E
Sbjct: 213 FEEAHGFVNGSRTVYERAVEFFGDDHADERLFIAFARFEEGQKEHDRVRVIYKYALDHLP 272
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYE----------------------- 183
KYGDR+GIEDVIVSKRKFQYE
Sbjct: 273 KDRTTELYKAYTIHEKKYGDRSGIEDVIVSKRKFQYEQEVNENPTNYDAWFDYLRLVENE 332
Query: 184 -EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
E + R Y+ A+ ++P + +++ Y Y +E + + + Y +
Sbjct: 333 SEPDVIRETYERAIANVPPAKDKNLWRRYIYLWINYALYEELETEDLERTRQIYRTCLEL 392
Query: 243 NPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIP-------------------- 278
P+ W Y + N R+T AI P
Sbjct: 393 IPHKQFTFSKIWLLYAQFEIRCKNLQTARKTLGMAIGRCPRDKLFRGYIDLEIQLREFDR 452
Query: 279 ------------P------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
P KFAELESLLGD++RARAIYELAI QPRLDMPEL+WK+YID
Sbjct: 453 CRILYEKFLEFGPENCTTWMKFAELESLLGDIDRARAIYELAIQQPRLDMPELLWKSYID 512
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDED---SVSLARRVFERANQA 377
FEV QGE R+L+ERLLERT+HVKVW++YA+FEMS+ +E+ +V LARRV+ERAN
Sbjct: 513 FEVQQGEFQLARQLYERLLERTMHVKVWISYAKFEMSAENEEEGLNVPLARRVYERANDC 572
Query: 378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV 437
LK +EKE RV++LEAW++FE +HGD +S K+ ++PR+ KKR K ++ G+EEGWEEV
Sbjct: 573 LKGLAEKESRVLVLEAWRDFEREHGDKQSMQKVLERMPRKVKKRQKIVSETGIEEGWEEV 632
Query: 438 FDYIFPEDEAAKPNLKLLEKAKAWKK 463
FD+IFPEDE A+PNLKLL AK WK+
Sbjct: 633 FDFIFPEDEMARPNLKLLAAAKNWKR 658
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347966738|ref|XP_321188.4| AGAP001879-PA [Anopheles gambiae str. PEST] gi|333469921|gb|EAA01065.4| AGAP001879-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 191/446 (42%), Positives = 252/446 (56%), Gaps = 101/446 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE +GF++G+R VYERA+EFFG+++ DE+LFIAFA+FEEGQ+E
Sbjct: 219 FEEAHGFINGSRTVYERAIEFFGDDHADERLFIAFARFEEGQKEHDRVRVIYKYALDHLP 278
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEH--------------------- 185
KYGDR+GIEDVIVSKRKFQYE+
Sbjct: 279 KDRTTELYKAYTIHEKKYGDRSGIEDVIVSKRKFQYEQEVNENPTNYDAWFDYLRLVENE 338
Query: 186 ---ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
E R Y+ A+ ++P + +++ Y Y +E + + + Y +
Sbjct: 339 NDPELIRETYERAIANVPPAKDKNLWRRYIYLWINYALYEELETEDLERTRQIYCTCLEL 398
Query: 243 NPNNY----DAWFDYLRLLEDEGNADLIRETYERAIANIP-------------------- 278
P+ W Y + N R+T AI P
Sbjct: 399 IPHKLFTFSKIWLLYAQFEIRCKNLQTARKTLGMAIGRCPRDKLFRGYIDLEIQLREFDR 458
Query: 279 ------------P------TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID 320
P KFAELESLLGD +RARAIYELAI QPRLDMPEL+WK+YID
Sbjct: 459 CRILYEKFLEFGPENCTTWMKFAELESLLGDTDRARAIYELAIQQPRLDMPELLWKSYID 518
Query: 321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDED---SVSLARRVFERANQA 377
FEV QGE R+L+ERLLERTVHVKVW++YA+FE+S+ +E+ +V LARR++ERAN+
Sbjct: 519 FEVQQGEFQLARQLYERLLERTVHVKVWISYAKFEISAENEEEGLNVPLARRIYERANEC 578
Query: 378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV 437
LK +EKE RV++LEAW++FE HGD+ + K+ ++PR+ KKR K ++ GVEEGWEEV
Sbjct: 579 LKGLAEKESRVLVLEAWRDFERDHGDEATLKKVLERMPRKVKKRQKIVSESGVEEGWEEV 638
Query: 438 FDYIFPEDEAAKPNLKLLEKAKAWKK 463
FD+IFPEDE A+PNLKLL AK WK+
Sbjct: 639 FDFIFPEDEMARPNLKLLAAAKNWKR 664
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241730155|ref|XP_002412275.1| crooked neck protein, putative [Ixodes scapularis] gi|215505514|gb|EEC15008.1| crooked neck protein, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 226/581 (38%), Positives = 304/581 (52%), Gaps = 121/581 (20%)
Query: 1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEEGWEEVFDYIFPEDEAAKPNLKLLEKAK 60
VKNK PAEIQITAEQLLREAKERDLEI+PP P+ + + P +L E
Sbjct: 18 VKNKTPAEIQITAEQLLREAKERDLEILPPP------------PKQKISDPE-ELAEYQI 64
Query: 61 AWKKAMEE---KQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDR-DSDTTYGMRE 116
+K E+ K + I + EE +++ +R E + D D + ++
Sbjct: 65 RKRKGFEDNIRKNRSVISNWIKYAQWEESQKEIQRGMVESEASGDTLVMVHPDVKHWIKY 124
Query: 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE-------------- 162
FEEQNG++S AR+VYERAVEFFGEE +DEKLF+AFAKFEE QRE
Sbjct: 125 ARFEEQNGYISNARRVYERAVEFFGEEYMDEKLFVAFAKFEENQREHDRVRVIYKYALDH 184
Query: 163 ------------------KYGDRAGIEDVIVSKRKFQYEEH------------------- 185
KYGDRAGIEDVIVSKRK+QYEE
Sbjct: 185 IPKDKAQELFKNYTIHEKKYGDRAGIEDVIVSKRKYQYEEQIKENPLNYDAWFDYLRLME 244
Query: 186 -----ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240
+ R Y+ A+ ++P + ++ Y Y +E + + Y +
Sbjct: 245 SEGNVDATRETYERAIANVPLSKEKRYWRRYIYLWVNYALFEELETGDAGRTREVYRACL 304
Query: 241 NSNPNNYDA------WFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLG 290
P+ W Y + + + A R+ AI P K + +LE L
Sbjct: 305 RLLPHKSFTFAKLWLWAAYFEVRQKDLAA--ARKLLGTAIGLCPKDKLFRGYIDLEIQLR 362
Query: 291 DMERARAIY----------------------------------ELAISQPRLDMPELVWK 316
+ +R R +Y E+AI QPRLDMPE++WK
Sbjct: 363 EFDRCRILYQKFLEFAPENCTTWMKFAELETILGDVERARAVYEIAIGQPRLDMPEVIWK 422
Query: 317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376
+YIDFE+ Q E + L+ERLLERT HVKVW+++A F+++ G ED V LAR V+ERAN+
Sbjct: 423 SYIDFEIEQEEPQRAAHLYERLLERTQHVKVWISFAHFQLNYGGEDPVPLARTVYERANK 482
Query: 377 ALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEE 436
L+ S EKEER+MLLE+W EFEA HGD++S+ + ++P++ KKR K ++G E GWEE
Sbjct: 483 QLRTSEEKEERLMLLESWSEFEAHHGDEQSQEAVAKQMPKKVKKRRKIVGEDGTEAGWEE 542
Query: 437 VFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEG 477
FDYIFP DEAAKP+LKLLE AK WKK +++ + GEEG
Sbjct: 543 YFDYIFPTDEAAKPHLKLLEIAKKWKK--QQQTEDDQGEEG 581
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|449671984|ref|XP_002165886.2| PREDICTED: crooked neck-like protein 1 [Hydra magnipapillata] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 246/417 (58%), Gaps = 84/417 (20%)
Query: 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167
S+ +R FEE G +S AR VYERAVEF+G++NL+E+LFIAFA+FEE QRE
Sbjct: 216 SNVKNWIRFARFEESQGNISNARIVYERAVEFYGDDNLNEQLFIAFARFEENQRE----- 270
Query: 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
ER R IYKYALD I K+ E++K YT EK++GDR+GIEDV
Sbjct: 271 -----------------FERVRTIYKYALDKISKNEAQELFKNYTTFEKRFGDRSGIEDV 313
Query: 228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------ 281
IVSKRKFQYEEEV NP NYDAWFDY+RL+E +G+ + IRE YERAIANIPP +
Sbjct: 314 IVSKRKFQYEEEVKLNPTNYDAWFDYIRLVESDGDQETIREVYERAIANIPPVQEKKHWR 373
Query: 282 --------FAELESL-LGDMERARAIYELA----------------------ISQPRLDM 310
+A E L + DM+R + +Y+ A + Q L
Sbjct: 374 RYIYLWIMYALFEELTVKDMDRTKLVYKAALEVVPHKKFTFAKIWLLYAYFEVRQKNLKA 433
Query: 311 PEL-------------VWKAYIDFEVGQGERDKVRELHERLLE-----RTVHVK------ 346
L +++ YI E+ E D+ R+L+E+ LE T +K
Sbjct: 434 ARLALGTSIGKCPKNKLFREYISLELQLREFDRCRKLYEKFLEFNPSNCTTWIKYAERET 493
Query: 347 -VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
VW++YA+FE ++G++ ++ AR +F+R ++ALKA + KEER+MLLEAWK FE +HG
Sbjct: 494 IVWISYARFESTTGEDAAIEQARSIFKRGDKALKADNLKEERMMLLEAWKTFEYEHGTSA 553
Query: 406 SRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWK 462
S+ ++ ++PR+ KKR K D+ + GWEE +DYIFP+++A +PN KLL+ AK WK
Sbjct: 554 SQMAIDKQMPRKVKKRRKVQTDDMSDAGWEEYYDYIFPDNDADQPNFKLLQMAKMWK 610
|
Source: Hydra magnipapillata Species: Hydra magnipapillata Genus: Hydra Family: Hydridae Order: Hydroida Class: Hydrozoa Phylum: Cnidaria Superkingdom: Eukaryota |
| >gi|156549704|ref|XP_001605480.1| PREDICTED: protein crooked neck-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 183/453 (40%), Positives = 249/453 (54%), Gaps = 100/453 (22%)
Query: 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------ 162
D + ++ FE+ +G+++GAR VYERAV FFG+ENLDE+L IAFA+FEE Q+E
Sbjct: 209 DVKHWIKYARFEKNHGYINGARNVYERAVTFFGDENLDERLIIAFAQFEEEQKEHDRARV 268
Query: 163 --------------------------KYGDRAGIEDVIVSKRKFQYEEH----------- 185
KYGDR+GIEDVIVSKRK +YE+
Sbjct: 269 IYKYALDHIPKEKTQEIYKAYTIHEKKYGDRSGIEDVIVSKRKHKYEQEVNENPKNYDAW 328
Query: 186 -------------ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232
E R Y+ A+ ++P E ++ Y Y +E V +
Sbjct: 329 FDYLRLLESEGNVEIVRETYERAIANVPPTEDKEFWRRYIYLWINYALYEELEAEDVERT 388
Query: 233 KFQYEEEVNSNPNNY----DAWFDYLRLLEDEGNADLIRETYERAIANIP---------- 278
+ Y+ + P+ W Y + + N + R+T A+ P
Sbjct: 389 RQVYKVCLELIPHKIFTFSKIWLYYAQFEIRQKNLQVARKTLGLALGICPRDKLYRGYID 448
Query: 279 ----------------------P------TKFAELESLLGDMERARAIYELAISQPRLDM 310
P KFAELE LGD ERARAIYELAI+QPRLDM
Sbjct: 449 LEIQLREFERCRKLYEKFLEFAPENCTTWMKFAELEGFLGDTERARAIYELAINQPRLDM 508
Query: 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDE--DSVSLAR 368
PE+VWK+YIDFE+ Q E ++ R L+ERLLERT+HVKVW+ YA+FEM + +E D+VSLAR
Sbjct: 509 PEVVWKSYIDFEISQEEPERARNLYERLLERTMHVKVWIAYAKFEMLNTEEGIDNVSLAR 568
Query: 369 RVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDE 428
R++ER N +LKAS+ E R +L EAW +FE HGDD+SRAK+ +K+PRR K+R + ++
Sbjct: 569 RIYERGNDSLKASASNESRALLFEAWADFEKAHGDDDSRAKIAAKMPRRVKQRRRVIAED 628
Query: 429 GVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAW 461
G ++GWEEVF++IFPEDE +PNLK+L +AW
Sbjct: 629 GTDDGWEEVFEFIFPEDEQNRPNLKILASVQAW 661
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|431894127|gb|ELK03927.1| Crooked neck-like protein 1 [Pteropus alecto] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/447 (40%), Positives = 255/447 (57%), Gaps = 83/447 (18%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE++G+ + ARKVYERAVEFFG+E++DE L++AFAKFEE Q+E
Sbjct: 258 FEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 317
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEHERA------------------ 188
K+GDR GIED+IVSKR+FQYEE +A
Sbjct: 318 KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 377
Query: 189 ------RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF----QYE- 237
R +Y+ A+ ++P + +K Y Y +E + + Q+E
Sbjct: 378 AEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKFTFAKMWLLYAQFEI 437
Query: 238 -------------EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----- 279
+ P N + Y+ L D R+ YE+ + P
Sbjct: 438 RQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSW 496
Query: 280 TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339
KFAELE++LGD+ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL
Sbjct: 497 IKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLL 556
Query: 340 ERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEA 399
+RT HVKVW+++AQFE+SSG E S++ R+++E AN+ ++ EKEER+MLLE+W+ FE
Sbjct: 557 QRTQHVKVWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFED 616
Query: 400 QHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAK 459
+ G + +++ +P + KKR K D+G + GWEE +DYIFPED A +PNLKLL AK
Sbjct: 617 EFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAK 676
Query: 460 AWKKAMEEKQGNKIGEEGANKENEEEE 486
WKK +EK+ + E+ +K+ +E E
Sbjct: 677 LWKKQQQEKE---VAEQDLDKDVDENE 700
|
Source: Pteropus alecto Species: Pteropus alecto Genus: Pteropus Family: Pteropodidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|326914759|ref|XP_003203690.1| PREDICTED: crooked neck-like protein 1-like [Meleagris gallopavo] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/453 (39%), Positives = 251/453 (55%), Gaps = 104/453 (22%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE---------------- 162
FEE++ + + ARKVYERAVEFFGEE++DE L++AFAKFEE Q+E
Sbjct: 223 FEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIP 282
Query: 163 ----------------KYGDRAGIEDVIVSKRKFQYEEHERA------------------ 188
K+GDR GIED+IVSKR+FQYEE +A
Sbjct: 283 KQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 342
Query: 189 ------RVIYKYALDHIPKDRTAEIYKAYTIHEKKYG----------------DRAGIED 226
R +Y+ A+ ++P + +K Y Y +A IE
Sbjct: 343 ADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELEAKDPERTRQVYQACIE- 401
Query: 227 VIVSKRKFQYEE------------------------EVNSNPNNYDAWFDYLRLLEDEGN 262
++ +KF + + + P N + Y+ L
Sbjct: 402 -LLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALGTSIGKCPKN-KLFKGYIELELQLRE 459
Query: 263 ADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317
D R+ YE+ + P KFAELE++LGD++RARAIYELAISQPRLDMPE++WK+
Sbjct: 460 FDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKS 519
Query: 318 YIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377
YIDFE+ Q E +K R L+ RLL+RT HVKVW+++AQFE+S+G E+S+S R+++E AN+A
Sbjct: 520 YIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWISFAQFELSAGKEESLSRCRQIYEEANKA 579
Query: 378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV 437
++ EKEERVMLLE+WK FE + G D ++ ++ +P + KKR K ++G + GWEE
Sbjct: 580 MRNCEEKEERVMLLESWKTFEEEFGTDSTKERIEKLMPEKIKKRRKLQAEDGSDAGWEEY 639
Query: 438 FDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQG 470
+DYIFPED A +PNLKLL AK WKK +E +
Sbjct: 640 YDYIFPEDTANQPNLKLLAMAKLWKKQQQESEA 672
|
Source: Meleagris gallopavo Species: Meleagris gallopavo Genus: Meleagris Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| TAIR|locus:2161363 | 673 | AT5G45990 [Arabidopsis thalian | 0.351 | 0.271 | 0.476 | 9.4e-86 | |
| UNIPROTKB|F1P3Q8 | 704 | CRNKL1 "Uncharacterized protei | 0.506 | 0.375 | 0.432 | 2.2e-84 | |
| UNIPROTKB|F1PYE9 | 797 | CRNKL1 "Uncharacterized protei | 0.510 | 0.333 | 0.420 | 3.1e-81 | |
| ASPGD|ASPL0000053069 | 673 | AN1259 [Emericella nidulans (t | 0.345 | 0.267 | 0.487 | 4.9e-80 | |
| FB|FBgn0000377 | 702 | crn "crooked neck" [Drosophila | 0.512 | 0.380 | 0.475 | 5.3e-71 | |
| UNIPROTKB|F1MZT2 | 781 | CRNKL1 "Uncharacterized protei | 0.506 | 0.338 | 0.425 | 8.7e-67 | |
| MGI|MGI:1914127 | 690 | Crnkl1 "Crn, crooked neck-like | 0.506 | 0.382 | 0.425 | 1.8e-66 | |
| RGD|620507 | 690 | Crnkl1 "crooked neck pre-mRNA | 0.506 | 0.382 | 0.425 | 1.8e-66 | |
| UNIPROTKB|Q5JY65 | 836 | CRNKL1 "Crooked neck-like prot | 0.506 | 0.315 | 0.425 | 1.9e-66 | |
| UNIPROTKB|Q9BZJ0 | 848 | CRNKL1 "Crooked neck-like prot | 0.506 | 0.311 | 0.425 | 2.6e-66 |
| TAIR|locus:2161363 AT5G45990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 9.4e-86, Sum P(3) = 9.4e-86
Identities = 92/193 (47%), Positives = 125/193 (64%)
Query: 262 NADLIRETYERAIANIPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWK 316
N D R+ YER + P +AE E L + ERARAI+ELAISQP LDMPEL+WK
Sbjct: 458 NIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELLWK 517
Query: 317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD--EDSVSLARRVFERA 374
YIDFE+ +GE +K R L+ERLL+RT H KVW+++A+FE S+ + ED + AR +F+RA
Sbjct: 518 TYIDFEISEGEFEKTRALYERLLDRTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRA 577
Query: 375 NQALKASSEK--EERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEE 432
N K ++ + EER LLE W E G+ + + SKLP++ KKR T ++G E
Sbjct: 578 NTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSVVQSKLPKKLKKRKMTSREDGSTE 637
Query: 433 GWEEVFDYIFPED 445
+EE FDY+FPE+
Sbjct: 638 -YEEYFDYLFPEE 649
|
|
| UNIPROTKB|F1P3Q8 CRNKL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 121/280 (43%), Positives = 182/280 (65%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ ++ +P K T A+I+ Y E + +++ +++R
Sbjct: 401 ELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQ------KNLPLARRALG- 453
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 454 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGD 511
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E +K R L+ RLL+RT HVKVW+++
Sbjct: 512 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWISF 571
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+S+G E+S+S R+++E AN+A++ EKEERVMLLE+WK FE + G D ++ ++
Sbjct: 572 AQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERVMLLESWKTFEEEFGTDSTKERIE 631
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K ++G + GWEE +DYIFPED A +PN
Sbjct: 632 KLMPEKIKKRRKLQAEDGSDAGWEEYYDYIFPEDTANQPN 671
|
|
| UNIPROTKB|F1PYE9 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
Identities = 117/278 (42%), Positives = 174/278 (62%)
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
+ + ++ ER R +Y+ +L+ IP + K + ++ + + R V VS
Sbjct: 494 ELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQ-FEIRQKNLPVSVSL----LGT 547
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDME 293
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD+E
Sbjct: 548 SIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 606
Query: 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353
RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++AQ
Sbjct: 607 RARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 666
Query: 354 FEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413
FE+SS E S++ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 667 FELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKL 726
Query: 414 LPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE +DYIFPED A +PN
Sbjct: 727 MPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 764
|
|
| ASPGD|ASPL0000053069 AN1259 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 4.9e-80, Sum P(3) = 4.9e-80
Identities = 99/203 (48%), Positives = 126/203 (62%)
Query: 267 RETYERAIANIPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321
R YE+ I P ++AELE L D ERARAIYEL I QP LDMPELVWKAYIDF
Sbjct: 456 RTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDF 515
Query: 322 EVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDS--------VS-----LAR 368
E +GE ++ R+L+ERLL++T HVKVW+NYA+FE++ DE+ +S AR
Sbjct: 516 EDDEGEYERERQLYERLLQKTDHVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRAR 575
Query: 369 RVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDE 428
VFERA++ K KEERV LL AW+ FE HG E K+ ++PRR KKR K +D
Sbjct: 576 AVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDDR 635
Query: 429 GVEEGWEEVFDYIFPEDEAAKPN 451
+EE DY+FP D+ + N
Sbjct: 636 -----YEEYMDYVFPADDQSAAN 653
|
|
| FB|FBgn0000377 crn "crooked neck" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 135/284 (47%), Positives = 182/284 (64%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + E+ ER R IYK L+ IP K T ++++ Y E + +++ +++
Sbjct: 379 ELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIR------CKELQRARKALGL 432
Query: 237 EEEVNSNPNNYDAWFDY-LRLLEDEGNADLIRETYERAIAN-IPPTKFAELESLLGDMER 294
+ + + D ++L E E L + E N + KFAELE+LLGD +R
Sbjct: 433 AIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDR 492
Query: 295 ARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQF 354
ARAI+ELA+ QPRLDMPEL+WKAYIDFEV GE + R+L+ERLLERT HVKVWM++A+F
Sbjct: 493 ARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKF 552
Query: 355 EM--SSGD-----EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407
EM S GD E +V LARR++ERAN+ L+ +KE RV+LLEAW++FE D +
Sbjct: 553 EMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWRDFERDASDSQEM 612
Query: 408 AKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
K+ K+PRR KKR K +D GVEEGWEEVFDYIFPEDE A+PN
Sbjct: 613 QKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPEDEMARPN 656
|
|
| UNIPROTKB|F1MZT2 CRNKL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 119/280 (42%), Positives = 179/280 (63%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ +L+ IP K T A+++ Y E + +++ ++R
Sbjct: 472 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQ------KNLPFARRALG- 524
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 525 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 582
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
+ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct: 583 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 642
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+SSG E S++ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 643 AQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRNFEDEFGTASDKERVD 702
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE +DYIFPED A +PN
Sbjct: 703 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 742
|
|
| MGI|MGI:1914127 Crnkl1 "Crn, crooked neck-like 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 119/280 (42%), Positives = 179/280 (63%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ +L+ IP K T A+++ Y E + +++ ++R
Sbjct: 384 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQ------KNLPFARRALG- 436
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 437 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
+ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++
Sbjct: 495 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISF 554
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+SSG E SV+ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 555 AQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVD 614
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE +DYIFPED A +PN
Sbjct: 615 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 654
|
|
| RGD|620507 Crnkl1 "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 119/280 (42%), Positives = 179/280 (63%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ +L+ IP K T A+++ Y E + +++ ++R
Sbjct: 384 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQ------KNLPFARRALG- 436
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 437 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
+ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++
Sbjct: 495 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISF 554
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+SSG E SV+ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 555 AQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVD 614
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE +DYIFPED A +PN
Sbjct: 615 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 654
|
|
| UNIPROTKB|Q5JY65 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
Identities = 119/280 (42%), Positives = 180/280 (64%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ +L+ IP K T A+++ Y E + +++ +++R
Sbjct: 533 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQ------KNLSLARRALG- 585
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 586 -TSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 643
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct: 644 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 703
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+SSG E S++ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 704 AQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVD 763
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE FDYIFPED A +PN
Sbjct: 764 KLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPN 803
|
|
| UNIPROTKB|Q9BZJ0 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 2.6e-66, Sum P(2) = 2.6e-66
Identities = 119/280 (42%), Positives = 180/280 (64%)
Query: 179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ + ++ ER R +Y+ +L+ IP K T A+++ Y E + +++ +++R
Sbjct: 545 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQ------KNLSLARRALG- 597
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
+ P N + Y+ L D R+ YE+ + P KFAELE++LGD
Sbjct: 598 -TSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 655
Query: 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct: 656 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 715
Query: 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
AQFE+SSG E S++ R+++E AN+ ++ EKEER+MLLE+W+ FE + G + +++
Sbjct: 716 AQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVD 775
Query: 412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
+P + KKR K D+G + GWEE FDYIFPED A +PN
Sbjct: 776 KLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPN 815
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 521 | |||
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 0.002 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 359 GDEDSVSL-ARRVFERANQALKASSEKEERVMLLEAWKEFEAQ-------HGDDESRAKL 410
DE + E + E E E E E Q GD+ + K+
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKV 801
Query: 411 NSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQG 470
+ A ++ + + EV D E + N + +AK +K ++ G
Sbjct: 802 EHEGETEAGEKDEHEGQSETQADDTEVKD----ETGEQELNAENQGEAKQDEKGVDGGGG 857
Query: 471 NKIGEEGANKENEEEERDKERDREEEDEKKDERDRDSDD 509
+ +G + E EEEE ++E + EEE+E+++E + ++++
Sbjct: 858 S----DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| KOG1915|consensus | 677 | 100.0 | ||
| KOG0495|consensus | 913 | 100.0 | ||
| KOG1915|consensus | 677 | 100.0 | ||
| KOG0495|consensus | 913 | 99.96 | ||
| KOG2047|consensus | 835 | 99.93 | ||
| KOG2047|consensus | 835 | 99.93 | ||
| KOG4626|consensus | 966 | 99.87 | ||
| KOG1914|consensus | 656 | 99.87 | ||
| KOG1070|consensus | 1710 | 99.83 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.83 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.81 | |
| KOG4626|consensus | 966 | 99.81 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.72 | |
| KOG1258|consensus | 577 | 99.71 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.67 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.65 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.62 | |
| KOG1070|consensus | 1710 | 99.62 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.61 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.59 | |
| KOG1258|consensus | 577 | 99.59 | ||
| KOG1914|consensus | 656 | 99.57 | ||
| KOG2396|consensus | 568 | 99.57 | ||
| KOG1126|consensus | 638 | 99.55 | ||
| KOG2076|consensus | 895 | 99.54 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG1155|consensus | 559 | 99.52 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| KOG2002|consensus | 1018 | 99.48 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.47 | |
| KOG1126|consensus | 638 | 99.47 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG0547|consensus | 606 | 99.46 | ||
| KOG0547|consensus | 606 | 99.43 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG1173|consensus | 611 | 99.42 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG0128|consensus | 881 | 99.38 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.38 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.36 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| KOG1155|consensus | 559 | 99.34 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.32 | |
| KOG1125|consensus | 579 | 99.29 | ||
| KOG2076|consensus | 895 | 99.28 | ||
| KOG1129|consensus | 478 | 99.23 | ||
| KOG2002|consensus | 1018 | 99.21 | ||
| KOG1174|consensus | 564 | 99.21 | ||
| KOG2396|consensus | 568 | 99.2 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG1125|consensus | 579 | 99.17 | ||
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.15 | |
| KOG0128|consensus | 881 | 99.14 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG1156|consensus | 700 | 99.04 | ||
| KOG1173|consensus | 611 | 99.03 | ||
| KOG0624|consensus | 504 | 99.02 | ||
| KOG1840|consensus | 508 | 99.01 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.92 | |
| KOG1129|consensus | 478 | 98.9 | ||
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| KOG1174|consensus | 564 | 98.86 | ||
| KOG2003|consensus | 840 | 98.84 | ||
| KOG2003|consensus | 840 | 98.83 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| KOG1127|consensus | 1238 | 98.81 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.81 | |
| KOG1840|consensus | 508 | 98.8 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| KOG0548|consensus | 539 | 98.79 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.79 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| KOG4162|consensus | 799 | 98.76 | ||
| KOG3060|consensus | 289 | 98.76 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| KOG2376|consensus | 652 | 98.76 | ||
| KOG1156|consensus | 700 | 98.74 | ||
| KOG3060|consensus | 289 | 98.74 | ||
| KOG4162|consensus | 799 | 98.69 | ||
| KOG3617|consensus | 1416 | 98.67 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG0624|consensus | 504 | 98.6 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.59 | |
| KOG1128|consensus | 777 | 98.57 | ||
| KOG1128|consensus | 777 | 98.56 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.5 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.49 | |
| KOG1127|consensus | 1238 | 98.49 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| KOG0548|consensus | 539 | 98.38 | ||
| KOG0550|consensus | 486 | 98.37 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| KOG3617|consensus | 1416 | 98.26 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.19 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.18 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| KOG0553|consensus | 304 | 98.01 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.88 | |
| KOG2376|consensus | 652 | 97.88 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 97.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.83 | |
| KOG0553|consensus | 304 | 97.81 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.75 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.75 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.74 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.61 | |
| KOG0550|consensus | 486 | 97.61 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.57 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.53 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.37 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.37 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.33 | |
| KOG0543|consensus | 397 | 97.24 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| KOG2053|consensus | 932 | 97.17 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.08 | |
| KOG3785|consensus | 557 | 97.06 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.79 | |
| KOG1585|consensus | 308 | 96.78 | ||
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 96.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.7 | |
| KOG0543|consensus | 397 | 96.7 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.63 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.58 | |
| KOG3785|consensus | 557 | 96.42 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.37 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.32 | |
| KOG3616|consensus | 1636 | 96.23 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.16 | |
| KOG1586|consensus | 288 | 96.13 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.05 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.0 | |
| KOG2053|consensus | 932 | 95.97 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.9 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 95.89 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.89 | |
| KOG3616|consensus | 1636 | 95.79 | ||
| KOG4555|consensus | 175 | 95.78 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.7 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.62 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.57 | |
| KOG4340|consensus | 459 | 95.46 | ||
| KOG3081|consensus | 299 | 95.44 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.44 | |
| KOG4340|consensus | 459 | 95.33 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.33 | |
| KOG3081|consensus | 299 | 95.26 | ||
| KOG4234|consensus | 271 | 95.22 | ||
| KOG4555|consensus | 175 | 95.21 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.12 | |
| KOG1130|consensus | 639 | 95.12 | ||
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 95.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.02 | |
| KOG0890|consensus | 2382 | 94.81 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.65 | |
| KOG4234|consensus | 271 | 94.26 | ||
| KOG2422|consensus | 665 | 94.21 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.7 | |
| KOG4648|consensus | 536 | 93.69 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.28 | |
| KOG4648|consensus | 536 | 93.28 | ||
| KOG0985|consensus | 1666 | 92.87 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.59 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.56 | |
| KOG4642|consensus | 284 | 92.54 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.09 | |
| KOG2796|consensus | 366 | 91.94 | ||
| KOG4642|consensus | 284 | 91.9 | ||
| KOG1585|consensus | 308 | 91.62 | ||
| KOG4507|consensus | 886 | 90.9 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.4 | |
| KOG4318|consensus | 1088 | 90.3 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.12 | |
| KOG2610|consensus | 491 | 90.1 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 89.67 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.39 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 89.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.85 | |
| KOG3824|consensus | 472 | 88.61 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 88.53 | |
| KOG1464|consensus | 440 | 88.46 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.38 | |
| KOG3824|consensus | 472 | 88.3 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.23 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.22 | |
| KOG0376|consensus | 476 | 88.22 | ||
| KOG2610|consensus | 491 | 87.89 | ||
| KOG2471|consensus | 696 | 87.45 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.93 | |
| KOG1130|consensus | 639 | 86.66 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.39 | |
| KOG1308|consensus | 377 | 85.23 | ||
| KOG0545|consensus | 329 | 85.13 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 84.95 | |
| KOG2041|consensus | 1189 | 84.75 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.4 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.13 | |
| KOG1586|consensus | 288 | 84.08 | ||
| KOG0890|consensus | 2382 | 83.32 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.33 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 81.32 | |
| KOG0545|consensus | 329 | 80.1 |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=723.05 Aligned_cols=443 Identities=55% Similarity=0.878 Sum_probs=419.9
Q ss_pred CCCCCCCcccCCHHHHHHHHHhccccCCCCCCC---CHHHHHhhccCcCcc-----------------------------
Q psy8681 1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE---GWEEVFDYIFPEDEA----------------------------- 48 (521)
Q Consensus 1 ~~~~~~~~~qit~~q~l~ea~~~~~~~~~~~~~---d~eel~~~~~~~~~~----------------------------- 48 (521)
||||+|||+|||||||||||++|+....+||.+ |++||.+||+|||+.
T Consensus 11 vknktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~ 90 (677)
T KOG1915|consen 11 VKNKTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQ 90 (677)
T ss_pred ccCCCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999999999999855544444 999999999999643
Q ss_pred ---------------------------------------CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----
Q psy8681 49 ---------------------------------------AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK----- 81 (521)
Q Consensus 49 ---------------------------------------~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife----- 81 (521)
+.|||++|||| ++||| +||+++||+.+||+||+
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 44888999999 99999 99999999999999999
Q ss_pred CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHH
Q psy8681 82 ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFI 151 (521)
Q Consensus 82 ~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~ 151 (521)
.|+. |+|+++++.||.+ +|+| .+||.+..|+.|+.|++++|++..||.||++|++.++++.....+++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV--~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFV--LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh--eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6876 9999999999999 9999 99999999999999999999999999999999999998777789999
Q ss_pred HHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 152 AFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 152 ~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
+||.|+.+++ ++++||.||+.||+++|.+.+..||..|+.||+++|+..+++++|+.|
T Consensus 249 aFA~fEe~qk----------------------E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 249 AFAEFEERQK----------------------EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHH----------------------HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999999999 999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------------------------ 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------------------------ 281 (521)
|+.+|+..+..||.|+++|++|+++....|+.++++++|++||.++|+..
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999855
Q ss_pred --------------------------------------------------------------------------------
Q psy8681 282 -------------------------------------------------------------------------------- 281 (521)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (521)
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence
Q ss_pred ----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy8681 282 ----------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351 (521)
Q Consensus 282 ----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~y 351 (521)
||.||..+|+.++||+||+.|+++|..+|+..+|.+||+|++..|++++||.||+++|..++|++||+++
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc--CCch-----------hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 352 AQFEMSS--GDED-----------SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 352 a~~e~~~--g~~~-----------~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
|.|+.+. |+++ ++..||.+|++|...+.+.+++++|++|+++|.+||..+|+..+++.|.++||++|
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKV 626 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHH
Confidence 9999954 2222 68999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCeeEEEEeecCCcccCCCcHHHHHHHHHHHHHhHhh
Q psy8681 419 KKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEK 468 (521)
Q Consensus 419 ~krr~~~~~~~~~~~~~e~~d~if~e~~~~~~~~~~~~~a~~w~~~~~~~ 468 (521)
||||++..+|| +.+|+||+|||||||..+++|+|||++|++||+++..+
T Consensus 627 KKrr~~~~edG-~~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~q~~~~ 675 (677)
T KOG1915|consen 627 KKRRKIQREDG-DTEYEEYFDYIFPEDASATKNLKILEAAKKWKKQKAKA 675 (677)
T ss_pred HhhhhhhcccC-chhHHHHHHhcCccccccCcchHHHHHHHHHHHHHHhc
Confidence 99999888888 66899999999999998899999999999999988754
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=276.87 Aligned_cols=354 Identities=20% Similarity=0.247 Sum_probs=273.7
Q ss_pred CCchhhhhhH-HHHHH--HHHHhcCChh-hhhhhcC-CCcH------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHH
Q psy8681 50 KPNLKLLEKA-KAWKK--AMEEKQGNKI-GEEGANK-ENEE------EERDKERDREEED-ERKDEGDRDS-DTTYGMRE 116 (521)
Q Consensus 50 ~rai~~lP~~-~~W~~--~~e~~~gn~~-~Ar~ife-~P~~------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~ 116 (521)
..||..+|.+ .+|++ .+|....+-. ..|+.++ .|++ .+.+.+.+.||.+ .|+| .+.| |.++|+.|
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAv--eccp~s~dLwlAl 416 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAV--ECCPQSMDLWLAL 416 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHH--HhccchHHHHHHH
Confidence 3677799999 99999 7776333322 2345555 6887 6677888889999 9999 9999 89999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh--------------------------
Q psy8681 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI-------------------------- 170 (521)
Q Consensus 117 a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~-------------------------- 170 (521)
++++ .|+.|++|+.+|-+.+|. ++.+|+.-+.+++.+|. .....++
T Consensus 417 arLe----tYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 417 ARLE----TYENAKKVLNKAREIIPT---DREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHH----HHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 9999 899999999999999874 68899999999999882 1111000
Q ss_pred ---------------------------hHHHHHh--hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh
Q psy8681 171 ---------------------------EDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221 (521)
Q Consensus 171 ---------------------------~~~~l~~--~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~ 221 (521)
..+|+.+ .+...+.++.||.+|..+|+.+|... .+|...+.|++.||..
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~--slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK--SLWLRAAMFEKSHGTR 566 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh--HHHHHHHHHHHhcCcH
Confidence 1122221 12333678999999999999999988 8999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------------------
Q psy8681 222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------------------- 281 (521)
Q Consensus 222 ~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------------------- 281 (521)
++...+ +++++..+|....+|++|+...+..|++..||.++.+|+..+|++.
T Consensus 567 Esl~Al--------lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 567 ESLEAL--------LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHHHH--------HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 999877 9999999999999999999999999999999999999999999876
Q ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 282 ------------------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 282 ------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++.||.-+|+.++|+.+++.+++..|. ...+|...++++.+.++++.||..|..+++.||
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 455555666666666666666664332 245666666666666666666666666666666
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhh
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRV 422 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr 422 (521)
++.+|+.++.++...|+ +.+||.+|++|....|++. .+|.+-+.+|.++|+.+.++.+..+. ++.
T Consensus 717 ~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk~~------~lwle~Ir~ElR~gn~~~a~~lmakA---LQe-- 782 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPKNA------LLWLESIRMELRAGNKEQAELLMAKA---LQE-- 782 (913)
T ss_pred CCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCCcc------hhHHHHHHHHHHcCCHHHHHHHHHHH---HHh--
Confidence 46677777777777666 8899999999988888874 69999999999999999888876554 654
Q ss_pred cccccCCCCCCeeEEEEeecCCcc
Q psy8681 423 KTYNDEGVEEGWEEVFDYIFPEDE 446 (521)
Q Consensus 423 ~~~~~~~~~~~~~e~~d~if~e~~ 446 (521)
||.+| ..|.+-||++..
T Consensus 783 --cp~sg-----~LWaEaI~le~~ 799 (913)
T KOG0495|consen 783 --CPSSG-----LLWAEAIWLEPR 799 (913)
T ss_pred --CCccc-----hhHHHHHHhccC
Confidence 88888 555667888864
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=266.10 Aligned_cols=355 Identities=25% Similarity=0.370 Sum_probs=281.7
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCCC-hhhHHH
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDSD-TTYGMR 115 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~ 115 (521)
.-.+ +.|.+ ++|++++++..||+||+ .-+. |++...+..||.+ +|+| ...|. ..+|.+
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv--t~lPRVdqlWyK 146 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV--TILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH--HhcchHHHHHHH
Confidence 3345 88999 99999999999999999 1111 8889999999999 9999 99995 579999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
|.-+++..||+..||++|++-+..-| +...|.+|++|+.+.+ ++++||.||++-
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P----~eqaW~sfI~fElRyk----------------------eieraR~IYerf 200 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYK----------------------EIERARSIYERF 200 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHH
Confidence 99999999999999999999999865 5789999999999998 999999999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
+-..|.- ..|..|+.||.++|+...+..+ |++|+....++ ..+...++.+...+..+++|+-+|.-
T Consensus 201 V~~HP~v---~~wikyarFE~k~g~~~~aR~V--------yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 201 VLVHPKV---SNWIKYARFEEKHGNVALARSV--------YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred heecccH---HHHHHHHHHHHhcCcHHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887764 6899999999999998888766 77777665443 34555666666666777777777777
Q ss_pred HHHcCCchh-------------------------------------------------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 273 AIANIPPTK-------------------------------------------------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 273 Al~~~P~~~-------------------------------------------------~a~le~~~g~~e~Ar~ife~al 303 (521)
||...|.+. |..|+...|+.++.+.+|++||
T Consensus 270 Ald~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI 349 (677)
T KOG1915|consen 270 ALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI 349 (677)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777652 7889999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHH--------HHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYIDF--------EVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLARRV 370 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~--------e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR~v 370 (521)
...|.......|..||-+ +....+.+.+|++|+.+|.+-|| .++|+.||+|+..+.+ +..||.+
T Consensus 350 anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~---l~~ARki 426 (677)
T KOG1915|consen 350 ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN---LTGARKI 426 (677)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc---cHHHHHH
Confidence 954433234555555543 45578899999999999998765 8899999999998866 6666666
Q ss_pred HHHHHHHhccchh---------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhc
Q psy8681 371 FERANQALKASSE---------------------------KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVK 423 (521)
Q Consensus 371 ferAl~~~~~~~~---------------------------~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~ 423 (521)
+-.|+-.||.... .-+.+..|..|.+||...|+.+.++.+.... |..-+
T Consensus 427 LG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA---i~qp~- 502 (677)
T KOG1915|consen 427 LGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA---ISQPA- 502 (677)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH---hcCcc-
Confidence 6666666665422 0123678999999999999999999998777 55433
Q ss_pred ccccCCCCCCeeEEEEeecCCcccCCCc-H--HHHHHHH
Q psy8681 424 TYNDEGVEEGWEEVFDYIFPEDEAAKPN-L--KLLEKAK 459 (521)
Q Consensus 424 ~~~~~~~~~~~~e~~d~if~e~~~~~~~-~--~~~~~a~ 459 (521)
.|-++..|..|+|+.+-+++..... + .||+..+
T Consensus 503 ---ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 503 ---LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred ---cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 2455678999999999998765443 3 7777654
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=245.78 Aligned_cols=304 Identities=21% Similarity=0.282 Sum_probs=263.5
Q ss_pred ccCCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHH
Q psy8681 47 EAAKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQ 122 (521)
Q Consensus 47 ~~~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~ 122 (521)
.++..+++.+|.. .+|.. +++.+.|..+....+| ++++ ...| ...+|++|++-...
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All------------------qkav--~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL------------------QKAV--EQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH------------------HHHH--HhCCcchhHHHHHHHHHHh
Confidence 4466677788888 88888 7777666666555555 5999 8889 78899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.|++..||.++.+|++..| .+..+|++..+++.... ++++||.+|.+|-..-|+.
T Consensus 597 agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~----------------------e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFEND----------------------ELERARDLLAKARSISGTE 651 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccc----------------------cHHHHHHHHHHHhccCCcc
Confidence 9999999999999999965 47899999999998887 9999999999998877765
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
.+|..++.|+.-.|+.+.+..+ ++++|+..|....+|+++++++.+.++++.||..|...++.+|.+.
T Consensus 652 ---Rv~mKs~~~er~ld~~eeA~rl--------lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 652 ---RVWMKSANLERYLDNVEEALRL--------LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred ---hhhHHHhHHHHHhhhHHHHHHH--------HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 6999999999999999988876 8999999999999999999999999999999999999999999886
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
++.||+..|.+-+||.+++++.-.+|.+ ..+|...|.+|.+.|+.+.|..+..++|+.|| +..+|..-+.++.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 6889999999999999999998766543 57999999999999999999999999999997 5778887666654
Q ss_pred HcCC---------------------------chhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 357 SSGD---------------------------EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 357 ~~g~---------------------------~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
..+. +.++++||++|+||+...|++++ .|-.|..||.+||+.++.+.
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD------~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD------AWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch------HHHHHHHHHHHhCCHHHHHH
Confidence 3211 25699999999999999999986 89999999999999999999
Q ss_pred HHhhC
Q psy8681 410 LNSKL 414 (521)
Q Consensus 410 v~~~~ 414 (521)
|..++
T Consensus 873 v~~~c 877 (913)
T KOG0495|consen 873 VLKKC 877 (913)
T ss_pred HHHHH
Confidence 98777
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=218.67 Aligned_cols=272 Identities=24% Similarity=0.362 Sum_probs=232.8
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC----CC--c--H-----------HHhcccchhhHHH-Hhhhcc-------------
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK----EN--E--E-----------EERDKERDREEED-ERKDEG------------- 104 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife----~P--~--~-----------e~r~g~~e~Ar~~-eral~~------------- 104 (521)
.+|.. .+|+..|+++.||.+|+ -| . + |++..+++.|+.+ ++++.-
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 89999 99999999999999999 12 1 1 8899999999999 998620
Q ss_pred ----CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh---------------hhcc
Q psy8681 105 ----DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR---------------EKYG 165 (521)
Q Consensus 105 ----~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~---------------~~~~ 165 (521)
.+|.|..+|..|+++++..|.++..+.||++.+++. ...|.+..+||.|.+.+. ++++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 223457899999999999999999999999999983 457899999999877655 2566
Q ss_pred ccchhhHHHHHhh--hhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 166 DRAGIEDVIVSKR--KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 166 ~~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+..+|.+||.++ .+++..+++||.+|++||+.+|+..+..+|..|+.||..+|-...+..+ |+++...-
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi--------yerat~~v 616 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI--------YERATSAV 616 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHhcC
Confidence 7778999999986 4677899999999999999999988889999999999999987777766 99998775
Q ss_pred C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 244 P--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 244 P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
+ .-.++|..|+.-....-.+...|.+|++||+..|++. |+.||.++|.+++||.||.-+.+.++......+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 4 3578999999988888789999999999999999987 899999999999999999999885544456899
Q ss_pred HHHHHHHHHhcCChHHHHHHHH--HHHhcC
Q psy8681 315 WKAYIDFEVGQGERDKVRELHE--RLLERT 342 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~e--ral~~~ 342 (521)
|.+|-.||.++|+-+..++++. |.++.+
T Consensus 697 W~twk~FEvrHGnedT~keMLRikRsvqa~ 726 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEMLRIKRSVQAT 726 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999777777653 555443
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=212.90 Aligned_cols=316 Identities=21% Similarity=0.318 Sum_probs=246.9
Q ss_pred hhhhhH-HHHHHHHHHhcCChhhhhhhcC------CCc-------H--------HHhcccchhhHHH-HhhhccCCC-CC
Q psy8681 54 KLLEKA-KAWKKAMEEKQGNKIGEEGANK------ENE-------E--------EERDKERDREEED-ERKDEGDRD-SD 109 (521)
Q Consensus 54 ~~lP~~-~~W~~~~e~~~gn~~~Ar~ife------~P~-------~--------e~r~g~~e~Ar~~-eral~~~~~-P~ 109 (521)
...|.. .-|.+.+--..||......+|. +|. . +-+.|.++.||.+ ++++ .+. |.
T Consensus 343 RQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~--~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT--KVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh--cCCccc
Confidence 356766 7787722223356666666665 232 1 6677788888888 8877 442 32
Q ss_pred ----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc----------------cccHHHHHHHHHHHHhhhhhccccch
Q psy8681 110 ----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE----------------NLDEKLFIAFAKFEEGQREKYGDRAG 169 (521)
Q Consensus 110 ----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~----------------~~~~~lw~~~a~~e~~~~~~~~~~~~ 169 (521)
..+|..||.++.++.+++.|.++.++|+.. |.. +.+..+|..|+.+++..|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g-------- 491 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG-------- 491 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--------
Confidence 467888888888888888888888887653 211 123567777788887777
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--CCCH
Q psy8681 170 IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--PNNY 247 (521)
Q Consensus 170 ~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--P~~~ 247 (521)
-++..+.+|++.++.--... .+-..|+.|...+.-++.+..+ |++.|.++ |.-+
T Consensus 492 --------------tfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~--------YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 492 --------------TFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKA--------YERGISLFKWPNVY 547 (835)
T ss_pred --------------cHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHH--------HHcCCccCCCccHH
Confidence 89999999999998732222 6788899998888888888877 99999985 5789
Q ss_pred HHHHHHHHHHHH-cC--CHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 248 DAWFDYLRLLED-EG--NADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 248 ~~W~~y~~~~~~-~g--~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
++|..|+.-..+ .| .+++||.+|++|+..||+.. |+.||+..|-..+|.+||++|...-+......+|+.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999877654 23 79999999999999999765 899999999999999999999885433334578999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTVH---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~ 394 (521)
||.--...-.....|.+|++|++.-|+ ....+.++.++.+.|. +++||.||--+-+.++.... ..+|..|
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE---idRARaIya~~sq~~dPr~~----~~fW~tw 700 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE---IDRARAIYAHGSQICDPRVT----TEFWDTW 700 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh---HHHHHHHHHhhhhcCCCcCC----hHHHHHH
Confidence 998766677789999999999998764 4567889999999999 99999999999999876543 5799999
Q ss_pred HHHHHHcCCHHHHHHHH
Q psy8681 395 KEFEAQHGDDESRAKLN 411 (521)
Q Consensus 395 ~~fE~~~G~~~~~~~v~ 411 (521)
..||-+|||.++++.++
T Consensus 701 k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 701 KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 99999999999998886
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=187.45 Aligned_cols=312 Identities=15% Similarity=0.093 Sum_probs=262.2
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-h
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-T 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-~ 110 (521)
.+|.+-|.. ..|.. ......|+.+.|-++|- +|+. ....|++++|..- .++| ...|. .
T Consensus 141 ~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi--~~qp~fA 218 (966)
T KOG4626|consen 141 AAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI--ETQPCFA 218 (966)
T ss_pred HHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH--hhCCcee
Confidence 455677777 77776 55667777777777776 5644 4457889999999 9999 99994 7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH-------------Hh
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV-------------SK 177 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l-------------~~ 177 (521)
..|..++-.....|++-.|+..|++|+.+.| ...+.|+++++.....+ .|+++...+..-+ +-
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP---~f~dAYiNLGnV~ke~~-~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP---NFLDAYINLGNVYKEAR-IFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCC---cchHHHhhHHHHHHHHh-cchHHHHHHHHHHhcCCcchhhccceEE
Confidence 8899999999999999999999999999844 46778888888776655 3333332221111 11
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
.++++|.++-|+..|++||+..|.-. ..|..++...+..|+...+.+. |.++|..+|+++++-.+++..+
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~c--------YnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDC--------YNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHH--------HHHHHHhCCccHHHHHHHHHHH
Confidence 24677999999999999999999876 7899999999999999999988 9999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
...|.++.|..+|..|+...|... ++.++.+.|+++.|...|..|+...|. ....+...++.+...|+.+.|.
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT--FADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch--HHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999999999998754 788899999999999999999997663 3567778888899999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+.|.+++..+| ..+.+.+++......|+ +..|..-|+.|+..-|+.++
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCCCch
Confidence 99999999998 68899999999998888 99999999999999988765
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-19 Score=178.12 Aligned_cols=331 Identities=18% Similarity=0.209 Sum_probs=213.0
Q ss_pred hhhhhhH-HHHHH-HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCChhHH
Q psy8681 53 LKLLEKA-KAWKK-AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 53 i~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~~~~A 129 (521)
|+..|.. ..|+. --|....-++.+|..|+ +++ ..+| ++..|..|+..+....+++.+
T Consensus 13 ie~nP~di~sw~~lire~qt~~~~~~R~~YE------------------q~~--~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQPIDKVRETYE------------------QLV--NVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred HhcCCccHHHHHHHHHHHccCCHHHHHHHHH------------------HHh--ccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 5567777 77777 22222335555665555 555 5555 455555555555555555555
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------------------hc---cccchhhHHHHHh-----h---hh
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------------------KY---GDRAGIEDVIVSK-----R---KF 180 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------------------~~---~~~~~~~~~~l~~-----~---~~ 180 (521)
.++|.+||... .+.++|..|..+-...+. +- ..+.++|+.|+.= . +.
T Consensus 73 EkLF~RCLvkv----LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 73 EKLFSRCLVKV----LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred HHHHHHHHHHH----hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 55555555431 234455554444332220 00 0112344444320 0 12
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH--------------------------------
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI-------------------------------- 228 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i-------------------------------- 228 (521)
+...++..|.+|++||.. |......+|..|..||...+.. .+.+.|
T Consensus 149 e~QRI~~vRriYqral~t-Pm~nlEkLW~DY~~fE~~IN~~-tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVT-PMHNLEKLWKDYEAFEQEINII-TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 223788889999999864 6665668888888888755321 111111
Q ss_pred ---------------------------------HhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------
Q psy8681 229 ---------------------------------VSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN------------ 262 (521)
Q Consensus 229 ---------------------------------~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~------------ 262 (521)
+.+| ...|+++|...+.++++|+.|..++...++
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 0112 357999999999999999999999988776
Q ss_pred --HHHHHHHHHHHHHcCCchh--------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 263 --ADLIRETYERAIANIPPTK--------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 263 --~~~Ar~~~erAl~~~P~~~--------------------------------------------~a~le~~~g~~e~Ar 296 (521)
-+++..+|++++...-... |.++-.+...+..||
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 7899999999988543221 334444556677788
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+|.+|-+.....-+.-+..+++.++ ..++..-|-.+|+-+|+.+++. ..-..|+.|++..++ -.+||.+|+|++
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l 462 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVL 462 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHH
Confidence 88888777543222334555555554 3577888888888888888754 444669999999988 789999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPR 416 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 416 (521)
.. ..++ .....+|..|++||..+||+..+.+|.+++-.
T Consensus 463 ~s-~l~~--~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 463 TS-VLSA--DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hc-cCCh--hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88 2222 34578999999999999999999999866643
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=191.16 Aligned_cols=252 Identities=23% Similarity=0.380 Sum_probs=203.1
Q ss_pred chhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 92 RDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFG--EENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 92 ~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~--~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
.+.|-.++|.| ..+| +.-+|+.|+.|..+.++++.||+++++||..+. +...--.+|++|.+++...|
T Consensus 1441 pesaeDferlv--rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG------- 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLV--RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG------- 1511 (1710)
T ss_pred CcCHHHHHHHH--hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------
Confidence 34555558888 8999 688999999999999999999999999999852 12233689999999998877
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
.-+....+|++|.+.+..- .+|..+..++.+.+..+.|..+ |+..++..-+...
T Consensus 1512 ---------------~eesl~kVFeRAcqycd~~---~V~~~L~~iy~k~ek~~~A~el--------l~~m~KKF~q~~~ 1565 (1710)
T KOG1070|consen 1512 ---------------TEESLKKVFERACQYCDAY---TVHLKLLGIYEKSEKNDEADEL--------LRLMLKKFGQTRK 1565 (1710)
T ss_pred ---------------cHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHhhcchhHHHH--------HHHHHHHhcchhh
Confidence 6778889999999886433 6888888888888888888876 9999999889999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
+|.+|+.++.+.++-+.|+.++.||++..|... +|.||.+.|+.+|+|.+|+..+...|.. ..+|..||+.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~ 1643 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDM 1643 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHH
Confidence 999999999999999999999999999999843 7788888888888888888877755432 3588888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 322 EVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
++.+|+.+.+|.+|+|++.+.-.+ .....++..|++||+.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~---------------------------------------kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSI---------------------------------------KKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCCh---------------------------------------hHhHHHHHHHHHHHHhc
Confidence 888888777777777777542110 12235788899999999
Q ss_pred CCHHHHHHHHhhCchhhh
Q psy8681 402 GDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 402 G~~~~~~~v~~~~p~~v~ 419 (521)
||...++.|..|+-..|.
T Consensus 1685 Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred CchhhHHHHHHHHHHHHH
Confidence 999999888877755553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=190.11 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=213.5
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS- 108 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P- 108 (521)
+.+++...|.. ..|+. .++...|+++.|..+|+ .|.+ +.+.|+++.|+.+ ++++ ..+|
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~ 565 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA--ELNPQ 565 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCcc
Confidence 34556666666 66665 56666677777766666 3443 4456666666666 6666 6666
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh-------------hHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI-------------EDVIV 175 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~-------------~~~~l 175 (521)
+...|..++.++...|+++.|..+|++++...| .+..+|..++......+ .+..+... ....+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAP---DSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 556666666666666666666666666665543 24455666555554444 11111100 01112
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHH--------------------------
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIV-------------------------- 229 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~-------------------------- 229 (521)
+..+...++++.|..+|++++...|.+. ..|..++.+....|+.+.+..++.
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 2223334577777777777777776654 556666666666666655544410
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
......|++++...|.+ ..+..++..+...|+.++|...+++++...|.+. .+.+....|+.+.|..+|++++.
T Consensus 720 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 01122356666666655 5555566666666666666666666666666544 45566677888888888888877
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..|. ...++..++......|+ .+|+.+|++++...| ++.+|..++.++...|+ ++.|..+|++++...|.++
T Consensus 799 ~~p~--~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~- 871 (899)
T TIGR02917 799 KAPD--NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---ADRALPLLRKAVNIAPEAA- 871 (899)
T ss_pred hCCC--CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh-
Confidence 5543 34566777777777777 778888888887765 56777778888877777 8888888888888887643
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.++..+...-...|+.+.+..+..++
T Consensus 872 -----~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 872 -----AIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24444444455778888888887665
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=185.11 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++++.|+..|++++...|.+. ..|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITS--------LKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 344444444444444444332 3333344444444444444333 444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+++|..+++.+....|.+. .+.+....|+++.|...|..++...|.+ ..+..++.++...|++++|...+++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444332 2333444555555555555555433321 2344444445555555555555555
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 338 LLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 338 al~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
++...| ++.++..++.++...|+ .+.|..+|++++...|+
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKD---YDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCC
Confidence 555443 34455555555555554 55555555555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=171.20 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+++|...|.+|+..-|... ..+-.++......|..+-|.+ .|+++|...|+-++++.+++..+-..|++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A--~a~gNla~iYyeqG~ldlAI~--------~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHA--VAHGNLACIYYEQGLLDLAID--------TYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred cchHHHHHHHHHHhcCCcch--hhccceEEEEeccccHHHHHH--------HHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 44555555555555544443 333333344444455554544 49999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+|...|.+|+..+|... ++..+...|.++.|..+|..++...|. .......++.++.++|++++|...|+.+
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~--~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE--FAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh--hhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999865 678888999999999999999996543 2456677788889999999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
|.+.| ....+.+.+.-+...|+ +..|.+.|.+|+...|.-
T Consensus 415 lrI~P~fAda~~NmGnt~ke~g~---v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 415 LRIKPTFADALSNMGNTYKEMGD---VSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HhcCchHHHHHHhcchHHHHhhh---HHHHHHHHHHHHhcCcHH
Confidence 99998 57888889998888888 999999999999999863
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-17 Score=176.96 Aligned_cols=251 Identities=17% Similarity=0.139 Sum_probs=182.7
Q ss_pred cchhhHHH-HhhhccCC---CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 91 ERDREEED-ERKDEGDR---DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~---~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.++.|... ++++ .. .| ....|..++.++...|+++.|...|++++...| .....|+.++......|
T Consensus 309 ~y~~A~~~~~~al--~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---~~~~~~~~la~~~~~~g---- 379 (615)
T TIGR00990 309 SYEEAARAFEKAL--DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---RVTQSYIKRASMNLELG---- 379 (615)
T ss_pred hHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHCC----
Confidence 45555666 6655 43 34 355666666666666666666666666666643 24455666666555555
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|+++++..|.+. .+|...+.+....|+.+.+... |++++..+|.
T Consensus 380 ------------------~~~eA~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~kal~l~P~ 431 (615)
T TIGR00990 380 ------------------DPDKAEEDFDKALKLNSEDP--DIYYHRAQLHFIKGEFAQAGKD--------YQKSIDLDPD 431 (615)
T ss_pred ------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCcc
Confidence 88888888888888888776 6777788888888888888766 8888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc-----HHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMP-----ELVW 315 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~-----~~lw 315 (521)
+...|..++.++...|++++|...|++++...|.+. ++.+....|+++.|...|++++...|.... ..++
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 888888888888888888888888888888888765 577778888888888888888885432111 1122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
...+.++...|++++|..+|++++...| +..+|+.++..+...|+ ++.|...|++|+...+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~---~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD---VDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHhccH
Confidence 2222233346888888888888888876 45678888888888888 888888888888887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=174.85 Aligned_cols=326 Identities=14% Similarity=0.081 Sum_probs=244.6
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhH
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~ 128 (521)
..+...|+++.|...|+ .|+. +...|+++.|+.. .+++ ...| .+..|...+..+...|+++.
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al--~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAAL--ELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66778999999999999 5754 7788999999999 9999 9999 68999999999999999999
Q ss_pred HHHHHHHHHHhcCC---------------------------ccccHHHHHHHHHH-------------------------
Q psy8681 129 ARKVYERAVEFFGE---------------------------ENLDEKLFIAFAKF------------------------- 156 (521)
Q Consensus 129 Ar~vye~Al~~~~~---------------------------~~~~~~lw~~~a~~------------------------- 156 (521)
|...|..++...+. .+.....|...+.+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 98877655432110 00000000001010
Q ss_pred ------------------HHhhhhhccccch---------hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy8681 157 ------------------EEGQREKYGDRAG---------IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYK 209 (521)
Q Consensus 157 ------------------e~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~ 209 (521)
+.... .|..... .....++...+..|+++.|...|++++...|... ..|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHH
Confidence 00000 1111110 0112233344566899999999999999999876 6788
Q ss_pred HHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH
Q psy8681 210 AYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAE 284 (521)
Q Consensus 210 ~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~ 284 (521)
.++......|+.+.+... |++++..+|.++++|..++.++...|++++|...|++++...|... ++.
T Consensus 370 ~la~~~~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 370 KRASMNLELGDPDKAEED--------FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 888888889999999877 9999999999999999999999999999999999999999999865 566
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHH------HHHHHHHH-H
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKV------WMNYAQFE-M 356 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~v------wi~ya~~e-~ 356 (521)
++..+|+++.|...|++++...|. ...+|..++.++...|+++.|+..|++++...|. ..+ |+..+... .
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 788899999999999999986654 3578888999999999999999999999998752 222 22222222 2
Q ss_pred HcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 357 SSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 357 ~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|+ +++|..+|++|+...|.+. ..+..+..+....|+.+.+.....+.
T Consensus 520 ~~~~---~~eA~~~~~kAl~l~p~~~------~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 520 WKQD---FIEAENLCEKALIIDPECD------IAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred Hhhh---HHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3466 9999999999999988763 23444555556789988877776555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=185.45 Aligned_cols=344 Identities=15% Similarity=0.158 Sum_probs=271.1
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH------------------------HHhcccchhhH
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE------------------------EERDKERDREE 96 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~------------------------e~r~g~~e~Ar 96 (521)
+.+++...|.. .+|+. .++...|+++.|+..|+ .|++ ..+.|+++.|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 55777889988 88888 88889999999999998 4532 34678999999
Q ss_pred HH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh----
Q psy8681 97 ED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI---- 170 (521)
Q Consensus 97 ~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~---- 170 (521)
.. ++++ ..+| +...+..++.++...|++++|...|++++...|. +..++..++.+....+ +......
T Consensus 372 ~~~~~Al--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~--~~~A~~~l~~l 444 (1157)
T PRK11447 372 RLYQQAR--QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQS--PEKALAFIASL 444 (1157)
T ss_pred HHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcC--HHHHHHHHHhC
Confidence 99 9999 9999 7889999999999999999999999999998663 4566666666543221 0000000
Q ss_pred ----------------hHHH--HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 171 ----------------EDVI--VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 171 ----------------~~~~--l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
...+ ++..+...++++.|+.+|++++...|.+. .++..++......|+.+.|...
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~----- 517 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADAL----- 517 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH-----
Confidence 0001 12234456899999999999999999876 6788888888999999999877
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI-------------------------------------- 274 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl-------------------------------------- 274 (521)
|++++..+|.++..++.++.++...++.++|...|+++.
T Consensus 518 ---l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 518 ---MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999988888888888877777766421
Q ss_pred --HcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 275 --ANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 275 --~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
...|.+. ++.++...|+++.|+..|+.++...|.+ ...+..++.++...|++++|+.+|++++...| ++.
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~--~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN--ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 1234333 6777888999999999999999976643 57888889999999999999999999998876 678
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
++..++......|+ +++|..+|++++...|..+.......++.....+....|+.+.+....++.
T Consensus 673 ~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 673 TQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888988888888 999999999999887654332223456666677888899999888877655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=173.14 Aligned_cols=293 Identities=12% Similarity=-0.011 Sum_probs=204.7
Q ss_pred hcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..|+++.|..+++ .|.+ .+..|+++.|... ++++ ..+| ++..|..++.++...|+++.|+.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l--~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLL--AVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555 3333 3345566666666 6666 5666 45566666666666666666666
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhh-----------HHHHH-hhhhhhhhHHHHHHHHHHHHhcC
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-----------DVIVS-KRKFQYEEHERARVIYKYALDHI 199 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~-----------~~~l~-~~~~~~~~~e~Ar~iy~~aL~~~ 199 (521)
.|++++...| .+..+|..++......| .+....... ..+.. -.++..|++++|..+|+.++...
T Consensus 132 ~l~~Al~l~P---~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 132 LAEQAWLAFS---GNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHhCC---CcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666665533 23445555555444443 111100000 00000 01233458899999999998887
Q ss_pred ChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH
Q psy8681 200 PKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL----IRETYERAIA 275 (521)
Q Consensus 200 P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~----Ar~~~erAl~ 275 (521)
|.... ..+...+......|+.+.+... |++++..+|.++.++..++.++...|+.++ |...|++++.
T Consensus 208 ~~~~~-~~~~~l~~~l~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 208 ALERQ-ESAGLAVDTLCAVGKYQEAIQT--------GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred CCcch-hHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 64321 2333344555678888888876 999999999999999999999999999885 8999999999
Q ss_pred cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHH
Q psy8681 276 NIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWM 349 (521)
Q Consensus 276 ~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi 349 (521)
..|.+. ++.+....|+++.|...|++++...|. ...++..++..+...|+++.|...|++++...|.. ..+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 999865 678888999999999999999997664 35678888889999999999999999999988754 4445
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..+..+...|+ .+.|...|++++...|+.
T Consensus 357 ~~a~al~~~G~---~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGK---TSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHhChhh
Confidence 56777788888 999999999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-16 Score=172.60 Aligned_cols=289 Identities=11% Similarity=-0.044 Sum_probs=195.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.++.|+++.|..+ +..+ ..+| +...+..++......|+++.|...|++++...| .++..|..++......|
T Consensus 52 ~~~~g~~~~A~~l~~~~l--~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P---~~~~a~~~la~~l~~~g-- 124 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRV--LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV---CQPEDVLLVASVLLKSK-- 124 (656)
T ss_pred HHhcCCcchhHHHhHHHH--HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcC--
Confidence 5678999999999 9999 9999 789999999999999999999999999999966 46778888888887777
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHH--------------
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIV-------------- 229 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~-------------- 229 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+...+.
T Consensus 125 --------------------~~~~Ai~~l~~Al~l~P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~ 182 (656)
T PRK15174 125 --------------------QYATVADLAEQAWLAFSGNS--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA 182 (656)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 45555555555555544443 344444444444444444433300
Q ss_pred -----------hhHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCH
Q psy8681 230 -----------SKRKFQYEEEVNSNPN-NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDM 292 (521)
Q Consensus 230 -----------~krr~~ye~al~~~P~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~ 292 (521)
.+....|++++..+|. +...+...+..+...|+.++|...|.+++...|.+. ++.+....|++
T Consensus 183 ~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 183 TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 0001125555555542 223333445556666777777777777777666654 46666677777
Q ss_pred HH----HHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 293 ER----ARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 293 e~----Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
+. |...|++++...|. ...+|..++.++...|+++.|...|++++...| ++.++..++..+...|+ ++.|
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSD--NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHH
Confidence 74 78888888876553 356777778888888888888888888888776 56677778887777777 8888
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 368 R~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
...|++++...|.... ........-...|+.+.+.....++
T Consensus 338 ~~~l~~al~~~P~~~~------~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 338 SDEFVQLAREKGVTSK------WNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHhCccchH------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888877775421 1111122234678877776665554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=157.32 Aligned_cols=257 Identities=13% Similarity=0.036 Sum_probs=215.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN-LDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~-~~~~lw~~~a~~e~~~~~~ 163 (521)
...|+++.|... .+++ ..+| ++.+|..++.++...|+++.|..+|++++...+... ....++..++......|
T Consensus 46 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g-- 121 (389)
T PRK11788 46 LLNEQPDKAIDLFIEML--KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG-- 121 (389)
T ss_pred HhcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC--
Confidence 345778888888 8999 9999 788999999999999999999999999987521100 11245666777777776
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|..+|+++++..|... ..+..++.+....|+.+.+... |++++...
T Consensus 122 --------------------~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~ 171 (389)
T PRK11788 122 --------------------LLDRAEELFLQLVDEGDFAE--GALQQLLEIYQQEKDWQKAIDV--------AERLEKLG 171 (389)
T ss_pred --------------------CHHHHHHHHHHHHcCCcchH--HHHHHHHHHHHHhchHHHHHHH--------HHHHHHhc
Confidence 99999999999999877765 6788888888889999988876 99998888
Q ss_pred CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 244 PNNY-----DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 244 P~~~-----~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
|.+. ..|..++..+...|++++|...|++++...|... ++.++...|+++.|..+|++++...|.. ...
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHH
Confidence 7653 3566788888899999999999999999888755 5677889999999999999999854422 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
++...+..+...|+++.|..+|++++...|+..++..++..+...|+ ++.|..+|++++...|+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~---~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG---PEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcCH
Confidence 67778888999999999999999999999887777889999999998 999999999999998875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-15 Score=149.94 Aligned_cols=339 Identities=17% Similarity=0.173 Sum_probs=234.1
Q ss_pred hhhhhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCCChhhH
Q psy8681 53 LKLLEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDSDTTYG 113 (521)
Q Consensus 53 i~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P~~~~W 113 (521)
|+-.|.. --|+. +.++..|.++..|.+|+ .|-. |+...++..+..+ .|++ ...-+.++|
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL--~k~l~ldLW 112 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL--KKSLNLDLW 112 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH--hhhccHhHH
Confidence 4568888 88998 88889999999999999 3432 7777888999999 9998 655579999
Q ss_pred HHHHHHHHHcCCh------hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 114 MRELVFEEQNGFV------SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 114 ~~~a~~e~~~g~~------~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..|..+-.+.++. ...-++|+-.+...+-++.+..+|..|+.|..... ..+.| .++..++.
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~-----~~~kw--------EeQqrid~ 179 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIE-----ELGKW--------EEQQRIDK 179 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcc-----ccccH--------HHHHHHHH
Confidence 9999998876532 23445666666654445667889999998876433 11111 12237899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH---------------------------------------
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI--------------------------------------- 228 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i--------------------------------------- 228 (521)
.|.+|.+||.. |......+|..|-.||...+... +.+.|
T Consensus 180 iR~~Y~ral~t-P~~nleklW~dy~~fE~e~N~~T-arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 180 IRNGYMRALQT-PMGNLEKLWKDYENFELELNKIT-ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHcC-ccccHHHHHHHHHHHHHHHHHHH-HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 99999999975 66666789999999987654321 11111
Q ss_pred -------------------------HhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 229 -------------------------VSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 229 -------------------------~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
...| -..|++++.-.|..+.+|++|..++...++-..|...-++++..+|.-.
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~ 337 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM 337 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe
Confidence 0111 2468888888999999999999999999888899999999888887632
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcC---------------CCCCC-------------cHHHHHHHHHHHHhcCChHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQ---------------PRLDM-------------PELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~---------------~~~~~-------------~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
|+..+....+.+..+..|+++++. .+.++ -..+|+.+++.-.+...++.||
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 455555555555555555544320 00000 1235555665555544444444
Q ss_pred H-----------------------------------HHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 333 E-----------------------------------LHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 333 ~-----------------------------------l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. +|+-++..+|+..+++. |..|+...++ -..||++|+.++.
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~ 494 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENARALFETSVE 494 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHH
Confidence 4 45555555565555543 6777777776 7888899998887
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCc
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p 415 (521)
...+. +-..+|..|+++|..+|+...+-.+.++|-
T Consensus 495 r~~~~----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 495 RLEKT----QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHh----hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 76653 335799999999999999988877766663
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-15 Score=173.87 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=158.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH------------------------------------------H
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK------------------------------------------K 217 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~------------------------------------------~ 217 (521)
...|++++|...|++++...|.+. ..+..++.+.. .
T Consensus 396 ~~~g~~~eA~~~y~~aL~~~p~~~--~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRMDPGNT--NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344599999999999999998865 34444333321 2
Q ss_pred cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCH
Q psy8681 218 YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDM 292 (521)
Q Consensus 218 ~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~ 292 (521)
.|+.+.|. ..|++++..+|.++.+++.++.++...|++++|...|++++...|.+. ++.+....|+.
T Consensus 474 ~g~~~eA~--------~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 474 QGKWAQAA--------ELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred CCCHHHHH--------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH
Confidence 23333333 459999999999999999999999999999999999999999888765 23344445555
Q ss_pred HHHHHHHHHHHc----------------------------------------CCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 293 ERARAIYELAIS----------------------------------------QPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 293 e~Ar~ife~al~----------------------------------------~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
+.|...++.+.. ..|. +..++..++.++...|+++.|+
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP--STRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHH
Confidence 555555443211 1122 2346777888888999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
.+|++++...| ++.+++.++.++...|+ ++.|+.+|++++...|++.. ++..+...-...|+.+.+..+.
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATANDSLN------TQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCCChH------HHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999987 68999999999999988 99999999999988776542 2222333333689988888877
Q ss_pred hhC
Q psy8681 412 SKL 414 (521)
Q Consensus 412 ~~~ 414 (521)
+++
T Consensus 695 ~~a 697 (1157)
T PRK11447 695 NRL 697 (1157)
T ss_pred HHH
Confidence 665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=150.23 Aligned_cols=283 Identities=12% Similarity=0.044 Sum_probs=223.7
Q ss_pred hhhH-HHHHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-----hhh
Q psy8681 56 LEKA-KAWKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-----TTY 112 (521)
Q Consensus 56 lP~~-~~W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-----~~~ 112 (521)
.+.. ...+. ......|+++.|...|. .|++ +.+.|+++.|..+ ++++ ...+. ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHHHH
Confidence 3444 34444 55667889999999998 5765 6788999999999 9988 64322 357
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
|..++..+...|+++.|..+|++++...| .....+..++......| ++++|..+|
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g----------------------~~~~A~~~~ 164 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLLEIYQQEK----------------------DWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHhc----------------------hHHHHHHHH
Confidence 89999999999999999999999998643 35677888888887777 999999999
Q ss_pred HHHHhcCChhhH---HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 193 KYALDHIPKDRT---AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 193 ~~aL~~~P~~~~---~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
+.++...|.... ..++..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL--------LKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH--------HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999988775431 23455666677788999988877 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 270 YERAIANIPPTK------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 270 ~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
|++++...|... .+..+...|+++.|...|++++...|.. .++...+.++...|+++.|..+|++++...|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---DLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 999999877642 4667788999999999999999865532 3447788889999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
+...+..+........+.+...++..+|++.+.
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 776666555544432211226677777777665
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-14 Score=150.51 Aligned_cols=319 Identities=23% Similarity=0.278 Sum_probs=239.3
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHH-cCC
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQ-NGF 125 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~-~g~ 125 (521)
.++...|.+ .+|.+ ..|-.+|+...+..+|+ |+| ...| |+.+|+.|+.+... .|+
T Consensus 70 ~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfe------------------rgv--~aip~SvdlW~~Y~~f~~n~~~d 129 (577)
T KOG1258|consen 70 IFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFE------------------RGV--QAIPLSVDLWLSYLAFLKNNNGD 129 (577)
T ss_pred HHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHH------------------HHH--HhhhhHHHHHHHHHHHHhccCCC
Confidence 445578899 99988 66667777776666665 999 9999 99999999999886 478
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------hccccchhh-----------H----------------
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------KYGDRAGIE-----------D---------------- 172 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------~~~~~~~~~-----------~---------------- 172 (521)
....|..|++|+...|.++.+..+|..|..|+..++. .|.+...++ .
T Consensus 130 ~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 130 PETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHH
Confidence 8899999999999999888899999999999976651 111111000 0
Q ss_pred -------------------------HHHHh-----------------------hhhh-hhhHHHHHHHHHHHHhc-----
Q psy8681 173 -------------------------VIVSK-----------------------RKFQ-YEEHERARVIYKYALDH----- 198 (521)
Q Consensus 173 -------------------------~~l~~-----------------------~~~~-~~~~e~Ar~iy~~aL~~----- 198 (521)
.++.. ..++ .......+..|+..+..
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 00000 0000 01222333444444433
Q ss_pred CChh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 199 IPKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 199 ~P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.|.. ....-|..|+.|+...|+...+.-. |++++.-+......|+.|+++++..|+.+-|..++.++.+..
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l--------~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFIL--------FERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHH--------HHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 1221 2347899999999999999988765 999999999999999999999999999999999999998864
Q ss_pred -Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH---HHHHHHHhcC--C--C
Q psy8681 278 -PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR---ELHERLLERT--V--H 344 (521)
Q Consensus 278 -P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar---~l~eral~~~--~--~ 344 (521)
|... ++.++...|++..|+.++++..+..|. -..+=..++.++.+.|+.+.+. .++.....-. + .
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg--~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~ 439 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG--LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL 439 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc--hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence 4333 889999999999999999999986543 2456667889999999999999 4444443322 2 4
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHH
Q psy8681 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407 (521)
Q Consensus 345 ~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~ 407 (521)
....+.++.+-..... +.+.|+.++..|+...|.+ ..++..+..|+...+...+.
T Consensus 440 ~~l~~~~~r~~~~i~~--d~~~a~~~l~~~~~~~~~~------k~~~~~~~~~~~~~~~~~e~ 494 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIRE--DADLARIILLEANDILPDC------KVLYLELIRFELIQPSGREY 494 (577)
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhcCCcc------HHHHHHHHHHHHhCCcchhh
Confidence 6777888888776532 3999999999999999987 46999999999998866554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-13 Score=157.31 Aligned_cols=326 Identities=14% Similarity=0.055 Sum_probs=223.7
Q ss_pred HHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHH
Q psy8681 66 MEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKV 132 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~v 132 (521)
.+...|.+..|..+|. .|+. ..+.|+++.|+.+ .++......|+..+|..++..+.+.|+++.|..+
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3445566666666665 3443 4455666666666 6655222334566666666666666666666666
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 133 YERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED------------VI--VSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 133 ye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
|+.+...-. ..+...|..++....+.| .+..+..+.. +| |-..+...|.++.|..+|..+...
T Consensus 495 f~eM~~~Gv--~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 495 FHEMVNAGV--EANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666655311 123455555555544444 1111111100 00 111223345899999999998752
Q ss_pred ----CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 199 ----IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 199 ----~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
.|.. ..|..++....+.|+.+.|..+ |+.+...+ +.+..+|..++..+.+.|++++|..+|.++
T Consensus 572 ~~gi~PD~---vTynaLI~ay~k~G~ldeA~el--------f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 572 THPIDPDH---ITVGALMKACANAGQVDRAKEV--------YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred cCCCCCcH---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3432 6888888888899999888877 88888875 457889999999999999999999999999
Q ss_pred HHc--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCH
Q psy8681 274 IAN--IPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER--TVHV 345 (521)
Q Consensus 274 l~~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~ 345 (521)
... .|+.. ++......|+++.|..+|..+..... .+....|...|..+.+.|+++.|..+|+.+... .|+.
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 876 45533 45567788999999999999987431 234678999999999999999999999998764 4789
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|..++..+...|. +++|..+|+++...-- .++......++.++. ..|+.+.+..+...|
T Consensus 720 vtyN~LI~gy~k~G~---~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~----k~G~le~A~~l~~~M 780 (1060)
T PLN03218 720 STMNALITALCEGNQ---LPKALEVLSEMKRLGL-CPNTITYSILLVASE----RKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH----HCCCHHHHHHHHHHH
Confidence 999999999999888 9999999999875421 122233344555544 788888888888777
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=157.68 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred HhcccchhhHHH-HhhhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRD--S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~--P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
.+.|+++.|..+ .+.+ ... | ++..|..++.+....++++.|+.+|++++...+ .++..+..++.+ ...+
T Consensus 19 ~~~~~~~~Al~~L~~~~--~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAA--QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc---cccccccccccc-cccc-
Confidence 456777777777 7776 554 5 689999999999999999999999999998743 345566777777 4555
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++++|..+++.+.+..+.. ..+..++.+....|+.+.+..+ ++++...
T Consensus 92 ---------------------~~~~A~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~--------l~~~~~~ 139 (280)
T PF13429_consen 92 ---------------------DPEEALKLAEKAYERDGDP---RYLLSALQLYYRLGDYDEAEEL--------LEKLEEL 139 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHH--------HHHHHH-
T ss_pred ---------------------ccccccccccccccccccc---chhhHHHHHHHHHhHHHHHHHH--------HHHHHhc
Confidence 8899999999988776543 5677788888888998888876 6665544
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 243 --NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 243 --~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
.|.++.+|..++.++.+.|+.++|..+|++|+...|++. ++.+....|+.+.++.++.......+.+ +.+|
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~--~~~~ 217 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD--PDLW 217 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS--CCHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH--HHHH
Confidence 368899999999999999999999999999999999866 5667778899999999988887754332 2489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
..++..+...|++++|..+|++++...| ++.+...|+..+...|. .++|..++.+++..+
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------------
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 9999999999999999999999999887 67888899999999998 999999999998754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-13 Score=155.33 Aligned_cols=341 Identities=7% Similarity=-0.037 Sum_probs=216.4
Q ss_pred CHHHHHhhccCcCcc---CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccc
Q psy8681 34 GWEEVFDYIFPEDEA---AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKER 92 (521)
Q Consensus 34 d~eel~~~~~~~~~~---~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~ 92 (521)
|+-.+..++...+.. +.+++..-|.. ..|.. .++...|++..|..+|+ .|.+ ....|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 777777777666432 22333233444 45665 67788888888888888 4664 6678888
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI 170 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~ 170 (521)
+.|+.+ ++++ ..+| +.. |..++.++...|+++.|..+|++++...| .+..++..++......+
T Consensus 100 ~eA~~~l~~~l--~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P---~~~~~~~~la~~l~~~~--------- 164 (765)
T PRK10049 100 DEALVKAKQLV--SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP---QTQQYPTEYVQALRNNR--------- 164 (765)
T ss_pred HHHHHHHHHHH--HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC---------
Confidence 888888 8888 8888 677 88888888888888888888888888865 35677777777766665
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHH--------HHH-----------------HHHH---HHHHHc-CCh
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTA--------EIY-----------------KAYT---IHEKKY-GDR 221 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~--------~l~-----------------~~~~---~~e~~~-G~~ 221 (521)
..+.|...+++++. .|..... .+. .++. .+.... .+.
T Consensus 165 -------------~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 165 -------------LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred -------------ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 77788888886665 3332000 000 0011 111110 000
Q ss_pred h---h---H-----HHHH----HhhHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch---
Q psy8681 222 A---G---I-----EDVI----VSKRKFQYEEEVNSN---PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT--- 280 (521)
Q Consensus 222 ~---~---a-----~~~i----~~krr~~ye~al~~~---P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~--- 280 (521)
. . + ..++ .......|++++... |.+...| ++.++...|++++|..+|++++...|..
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 0 0 0 0001 012345677766664 3344455 3667777777888888888877765543
Q ss_pred ---h---HHHHHHHcCCHHHHHHHHHHHHcCCCCC-------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 281 ---K---FAELESLLGDMERARAIYELAISQPRLD-------------MPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 281 ---~---~a~le~~~g~~e~Ar~ife~al~~~~~~-------------~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
. ++......|+++.|..+++.++...|.. ....++..++.++...|+++.|..+|++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 2334456788888888888777653310 01234455666777778888888888888877
Q ss_pred CC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 342 TV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 342 ~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.| ++.+|+.++..+...|. ++.|..+|++|+...|++.. ++..........|+.+.+..+.+.+
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~------l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNIN------LEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76 57788888888877777 88888888888888877632 3333333444567777766666544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-14 Score=156.84 Aligned_cols=308 Identities=10% Similarity=-0.025 Sum_probs=222.7
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-C
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-D 109 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~ 109 (521)
..+++.+.|.. .+|.. .+....|+++.|+.+++ .|++ ....|+++.|... ++++ ..+| +
T Consensus 72 ~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al--~~~P~~ 149 (765)
T PRK10049 72 WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQAL--PRAPQT 149 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCC
Confidence 56777888998 88887 77788999999999998 5664 6678999999999 9999 9999 7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH---HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH-
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK---LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH- 185 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~---lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 185 (521)
..++..++.++...+..+.|..++++++. .|.. .... .....+.+....+ ....+.+
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~-----------------~~~~~r~~ 210 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPT-----------------RSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccc-----------------cChhHHHH
Confidence 89999999999999999999999987765 3310 0000 0000011110000 0000122
Q ss_pred --HHHHHHHHHHHhcCChh---hHH--HHHHH-HHHHHHHcCChhhHHHHH---------------------------Hh
Q psy8681 186 --ERARVIYKYALDHIPKD---RTA--EIYKA-YTIHEKKYGDRAGIEDVI---------------------------VS 230 (521)
Q Consensus 186 --e~Ar~iy~~aL~~~P~~---~~~--~l~~~-~~~~e~~~G~~~~a~~~i---------------------------~~ 230 (521)
++|...|+.++...|.+ ... ..... ++.+ ...|+.+.|...+ ..
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 66777777777543222 100 00000 1111 1223222222111 02
Q ss_pred hHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch-------------h-------HHHHH
Q psy8681 231 KRKFQYEEEVNSNPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-------------K-------FAELE 286 (521)
Q Consensus 231 krr~~ye~al~~~P~~----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~-------------~-------~a~le 286 (521)
++...|++++..+|.+ ...+..++..+...|++++|...+++++...|.. . ++.+.
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 3345699988888866 4567777778889999999999999999987731 1 46677
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhH
Q psy8681 287 SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVS 365 (521)
Q Consensus 287 ~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~ 365 (521)
...|+++.|..+|+.++...|.+ ..+|...+..+...|+++.|..+|++++...| ++.+++..+......++ ++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---~~ 444 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE---WR 444 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---HH
Confidence 78899999999999999976654 67999999999999999999999999999998 58899999999999888 99
Q ss_pred HHHHHHHHHHHHhccchh
Q psy8681 366 LARRVFERANQALKASSE 383 (521)
Q Consensus 366 ~AR~vferAl~~~~~~~~ 383 (521)
.|..++++++...|+++.
T Consensus 445 ~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 999999999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-13 Score=154.79 Aligned_cols=319 Identities=12% Similarity=0.078 Sum_probs=238.7
Q ss_pred HHHHhcCChhhhhhhcC-------CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK-------ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-------~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~ 127 (521)
..+...|+++.|++++. .|+. +.+.|+++.|+.+ +++. .|++.+|..++..+.+.|+++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHH
Confidence 55667888888888887 4654 7888999999999 8876 378889999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------------hcc--ccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------------KYG--DRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------------~~~--~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
+|..+|++++.... . .+...+..+.......+. ..+ ....++. -|-..+...|.++.|+.+|+
T Consensus 207 ~A~~lf~~M~~~g~-~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n-~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 207 EAFALFREMWEDGS-D-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC-ALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred HHHHHHHHHHHhCC-C-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH-HHHHHHHHCCCHHHHHHHHH
Confidence 99999999987522 1 233444444433332220 000 0000000 01223344578999999998
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
..... +. ..|+.++....+.|+.+.|..+ |++..... .-+..++..++..+.+.|.++.|..++..
T Consensus 284 ~m~~~---~~--vt~n~li~~y~~~g~~~eA~~l--------f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 284 GMPEK---TT--VAWNSMLAGYALHGYSEEALCL--------YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred hCCCC---Ch--hHHHHHHHHHHhCCCHHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 86432 22 6899999999999999999877 88887653 33567899999999999999999999999
Q ss_pred HHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC
Q psy8681 273 AIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT--VH 344 (521)
Q Consensus 273 Al~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~ 344 (521)
+++.. +.+. ++.++.+.|+++.|+.+|+.+... ....|+..|..+.+.|+.++|..+|++++... |+
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 98864 3222 677888999999999999987653 23579999999999999999999999998754 78
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCc
Q psy8681 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 345 ~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p 415 (521)
...+..++..+...|. +++|..+|+.+....+-.++......++..+. +.|..+.+..+.+++|
T Consensus 426 ~~T~~~ll~a~~~~g~---~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~----r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 426 HVTFLAVLSACRYSGL---SEQGWEIFQSMSENHRIKPRAMHYACMIELLG----REGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHHhcCCc---HHHHHHHHHHHHHhcCCCCCccchHhHHHHHH----hcCCHHHHHHHHHHCC
Confidence 8899999998888888 99999999999876554444344555555555 7888888888888776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-13 Score=153.08 Aligned_cols=366 Identities=16% Similarity=0.120 Sum_probs=264.8
Q ss_pred hhhhHHHHHH--HHHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCC-------------
Q psy8681 55 LLEKAKAWKK--AMEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDR------------- 106 (521)
Q Consensus 55 ~lP~~~~W~~--~~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~------------- 106 (521)
..|.+..+.. .++-..|+++.|+.+|+ .|+. +.+.|++++|..+ ++++....
T Consensus 154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3454433444 88889999999999999 4554 7788999999999 88752111
Q ss_pred ----------------------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 107 ----------------------DSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 107 ----------------------~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
.|+..++..++..+.+.|+++.|+.+|+.+.. .+...|..++......| .+
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g-~~ 306 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHG-YS 306 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCC-CH
Confidence 23455677888999999999999999987632 25567888777776666 22
Q ss_pred cccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 165 GDRAGIED------------VI--VSKRKFQYEEHERARVIYKYALDHI-PKDRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 165 ~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~aL~~~-P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
..+..++. +| +-..+...+.++.|..++..+++.. +.+. .++..++....+.|+.+.|..+
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~--~~~~~Li~~y~k~G~~~~A~~v-- 382 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI--VANTALVDLYSKWGRMEDARNV-- 382 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe--eehHHHHHHHHHCCCHHHHHHH--
Confidence 22221111 11 1122445578899999999998763 3333 6888999999999999999877
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~----~a~le~~~g~~e~Ar~ife~al 303 (521)
|++... .+..+|..++..+.+.|+.++|..+|++++.. .|+.. +.......|.++.|..+|+.+.
T Consensus 383 ------f~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 383 ------FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred ------HHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 877643 36789999999999999999999999999874 45543 3444668899999999999998
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+..+....|..+++.+.+.|.+++|.++|+++ ...|+..+|..++..+...|+ ++.|+.++++.+...|.+.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~---~~~a~~~~~~l~~~~p~~~- 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKN---LELGRLAAEKLYGMGPEKL- 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHhCCCCCCC-
Confidence 74333334568999999999999999999999875 244788999999999999998 9999999999998877643
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEE--EEeecCCcccCCCcH-HHHHH
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV--FDYIFPEDEAAKPNL-KLLEK 457 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~--~d~if~e~~~~~~~~-~~~~~ 457 (521)
.....|...|. ..|..+.+.++.+.|..+ . +....| ..|.+. --+.|.-+....|.. .+.+.
T Consensus 529 -~~y~~L~~~y~----~~G~~~~A~~v~~~m~~~----g-~~k~~g--~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 529 -NNYVVLLNLYN----SSGRQAEAAKVVETLKRK----G-LSMHPA--CTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred -cchHHHHHHHH----hCCCHHHHHHHHHHHHHc----C-CccCCC--eeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 23455556555 899999999999888322 1 112233 234443 125566655455554 34333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-13 Score=156.49 Aligned_cols=308 Identities=12% Similarity=0.058 Sum_probs=207.6
Q ss_pred hhhhH-HHHHH-HHHHhcCChhhhhhhcC-------CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHH
Q psy8681 55 LLEKA-KAWKK-AMEEKQGNKIGEEGANK-------ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMR 115 (521)
Q Consensus 55 ~lP~~-~~W~~-~~e~~~gn~~~Ar~ife-------~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~ 115 (521)
..|.. .+-.- ..+...|+++.|++++. .|+. +.+.|+++.|+.+ +++. .|++.+|..
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 45665 44433 66677888888888887 3544 7788888888888 8765 367778888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
++..+.+.|++++|..+|+.+...-- . ++...+..+.......| .++.|..++..+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~-~-Pd~~t~~~ll~a~~~~g----------------------~~~~a~~l~~~~ 415 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNV-S-PDEITIASVLSACACLG----------------------DLDVGVKLHELA 415 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC-C-CCceeHHHHHHHHhccc----------------------hHHHHHHHHHHH
Confidence 88888888888888888888766421 1 23334444444444444 555555555555
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
++..... ...+|..++....+.|+.+.|..+ |++.. ..+..+|..++..+.++|+.++|..+|.+++.
T Consensus 416 ~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~v--------f~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 416 ERKGLIS-YVVVANALIEMYSKCKCIDKALEV--------FHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHhCCCc-chHHHHHHHHHHHHcCCHHHHHHH--------HHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5442111 114455555555555555555444 44322 12344555555555555555555555555544
Q ss_pred cCCchh----------------------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 276 NIPPTK----------------------------------------FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 276 ~~P~~~----------------------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
..+++. +..++.+.|+++.|..+|+.. .+ +...|
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~----d~~s~ 557 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK----DVVSW 557 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CC----ChhhH
Confidence 322211 456778889999999999886 21 35689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLER--TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
+.+|..+...|+.++|..+|+++... .|+...+..+...+.+.|. +++|..+|+.+....+-.++......+...
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~---v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM---VTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh---HHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999875 3788888888888888888 999999999998766655554555555555
Q ss_pred HHHHHHHcCCHHHHHHHHhhCc
Q psy8681 394 WKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~p 415 (521)
+. +.|..+.+..+.+.||
T Consensus 635 l~----r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 635 LG----RAGKLTEAYNFINKMP 652 (857)
T ss_pred HH----hCCCHHHHHHHHHHCC
Confidence 55 8999999999999987
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=149.15 Aligned_cols=320 Identities=13% Similarity=0.045 Sum_probs=232.2
Q ss_pred HhcCChhhhhhhcC---C-----CcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHH
Q psy8681 68 EKQGNKIGEEGANK---E-----NEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 68 ~~~gn~~~Ar~ife---~-----P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~A 129 (521)
-..|++..|+.+|+ . |+. ..+.|.++.|..+ ..+. . |+..+|..++..+.+.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~--~--pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR--N--PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC--C--CCHHHHHHHHHHHHhCcCHHHH
Confidence 36799999999999 1 222 5567889999999 8877 4 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHH
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED------------VI--VSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~a 195 (521)
+.+|..+...-. ..+..+|..++....+.| .+..+..+.. +| |-..+...|.++.|..+|..+
T Consensus 457 ~~lf~~M~~~Gl--~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 457 LRVLRLVQEAGL--KADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999987622 246778888888777776 1111111100 01 112234557778888888877
Q ss_pred Hhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 196 LDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-N--PNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 196 L~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~-~--P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
... .|.. ..|..++....+.|+.+.+..+ |+++... . .-+..+|..++..+.+.|++++|..+|
T Consensus 534 ~~~Gv~PD~---vTYnsLI~a~~k~G~~deA~~l--------f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 534 RSKNVKPDR---VVFNALISACGQSGAVDRAFDV--------LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHcCCCCCH---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 654 2332 5777777777778887777766 7777652 1 224678888888888888888888888
Q ss_pred HHHHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--
Q psy8681 271 ERAIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-- 342 (521)
Q Consensus 271 erAl~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-- 342 (521)
+.+.... +++. .+..+.+.|+++.|..+|..+.... ..++...|...|+.+.+.|+++.|..+|+.+.+..
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 8887763 2222 4556778899999999998887742 12245688888888888999999999999988764
Q ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 343 ~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|+..+|..++..+.+.|+ ++.|..+|+.....- -.++...+..|+..|. +.|..+.+..+...|
T Consensus 682 pd~~tynsLI~ay~k~G~---~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~----k~G~~eeAlelf~eM 745 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKN---WKKALELYEDIKSIK-LRPTVSTMNALITALC----EGNQLPKALEVLSEM 745 (1060)
T ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHH
Confidence 678888889998888888 999999999876532 1223233444555554 789999998888877
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=150.61 Aligned_cols=267 Identities=19% Similarity=0.167 Sum_probs=111.6
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 105 DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 105 ~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..+|+ ...+.++.++.+.|+++.|.+++.+++.... .+.+..+|..++.+....+ +
T Consensus 4 ~~~~~-~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~----------------------~ 59 (280)
T PF13429_consen 4 EFGPS-EEALRLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLG----------------------D 59 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccccccccccccccc-ccccccccccccccccccc----------------------c
Confidence 44565 5567889999999999999999988776641 1346789999999888888 9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~ 264 (521)
++.|+.+|++++...|.+. ..+..++.+ ...|+...+..+ ++++.... .++..|..++.++...++.+
T Consensus 60 ~~~A~~ay~~l~~~~~~~~--~~~~~l~~l-~~~~~~~~A~~~--------~~~~~~~~-~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 60 YDEAIEAYEKLLASDKANP--QDYERLIQL-LQDGDPEEALKL--------AEKAYERD-GDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccc--ccccccccc-cccccccccccc--------cccccccc-cccchhhHHHHHHHHHhHHH
Confidence 9999999999998877654 567777777 577888777766 66666554 56788899999999999999
Q ss_pred HHHHHHHHHHHcC--Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 265 LIRETYERAIANI--PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 265 ~Ar~~~erAl~~~--P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
++..+++++.... |.+. ++.++...|+.+.|..+|++++...|. +..++..++.++...|+.++++.++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999987644 3333 678899999999999999999997664 367899999999999999999999999
Q ss_pred HHhcC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch
Q psy8681 338 LLERT-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPR 416 (521)
Q Consensus 338 al~~~-~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 416 (521)
..... +++.+|..++..+...|+ .+.|..+|++++...|+++ .++..+.+.-...|..+.+..|..++-+
T Consensus 206 ~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~p~d~------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 206 LLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLNPDDP------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-H------HHHHHHHHHHT-----------------
T ss_pred HHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence 99886 578899999999999998 9999999999999999874 5778888888899999999888776644
Q ss_pred hh
Q psy8681 417 RA 418 (521)
Q Consensus 417 ~v 418 (521)
.+
T Consensus 277 ~l 278 (280)
T PF13429_consen 277 LL 278 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=150.42 Aligned_cols=363 Identities=13% Similarity=0.056 Sum_probs=251.8
Q ss_pred hhHHHHHH--HHHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHH
Q psy8681 57 EKAKAWKK--AMEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEE 121 (521)
Q Consensus 57 P~~~~W~~--~~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~ 121 (521)
|.+..|.. .++-..|+++.|+++|+ .|+. +.+.|++++|..+ +++......|+..++..+...+.
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 44444544 77888899999999998 4543 7788889999998 87753345677778888888888
Q ss_pred HcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch-----------hhHHHHHhhhhhhhhHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG-----------IEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
+.|+++.|.++++.+++.-. ..+..++..++..+.+.| .+..+.. .|...+ ..+.+.+..++|..
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~--~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~vs~~~mi-~~~~~~g~~~eA~~ 476 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGL--ISYVVVANALIEMYSKCK-CIDKALEVFHNIPEKDVISWTSII-AGLRLNNRCFEALI 476 (857)
T ss_pred ccchHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCeeeHHHHH-HHHHHCCCHHHHHH
Confidence 88888888888888877521 134566677777666665 1111111 121111 12233456667777
Q ss_pred HHHHHHhcCChhh---------------------------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 191 IYKYALDHIPKDR---------------------------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 191 iy~~aL~~~P~~~---------------------------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
+|+.++...+.+. ...++.+++....+.|+.+.|..+ |+
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~--------f~ 548 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ--------FN 548 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH--------HH
Confidence 7777665433222 002334455566666766666554 66
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh-H---HHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK-F---AELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~-~---a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
.. +.+..+|..++..+...|+.++|..+|+++... .|+.. | .......|.+++|..+|+.+....+..+.
T Consensus 549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 64 668899999999999999999999999999874 45543 3 34466789999999999999854334445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
...|..+++.+.+.|.+++|..+++.+ ...|++.+|-.+...+...++ .+.+..+.++.++..|++.. ....|.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~---~e~~e~~a~~l~~l~p~~~~--~y~ll~ 698 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRH---VELGELAAQHIFELDPNSVG--YYILLC 698 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcc--hHHHHH
Confidence 678999999999999999999999987 356899999999998888888 99999999999999887642 334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEE--EEeecCCcccCCCcH
Q psy8681 392 EAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV--FDYIFPEDEAAKPNL 452 (521)
Q Consensus 392 ~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~--~d~if~e~~~~~~~~ 452 (521)
..|. ..|..+.+.++.+.|- .+. +...-| ..|.|. --+.|--+....|..
T Consensus 699 n~ya----~~g~~~~a~~vr~~M~----~~g-~~k~~g--~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 699 NLYA----DAGKWDEVARVRKTMR----ENG-LTVDPG--CSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred HHHH----HCCChHHHHHHHHHHH----HcC-CCCCCC--ccEEEECCEEEEEecCCCCCcch
Confidence 4444 7899999999998882 111 222233 245543 235566555556654
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=155.47 Aligned_cols=212 Identities=27% Similarity=0.393 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-Ch--hhHH
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-PK--DRTA 205 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-P~--~~~~ 205 (521)
...-|++.+... |.+.-+|+.|..|....+ +++.||.++++||..+ +. ....
T Consensus 1443 saeDferlvrss---PNSSi~WI~YMaf~Lels----------------------EiekAR~iaerAL~tIN~REeeEKL 1497 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS---PNSSILWIRYMAFHLELS----------------------EIEKARKIAERALKTINFREEEEKL 1497 (1710)
T ss_pred CHHHHHHHHhcC---CCcchHHHHHHHHHhhhh----------------------hhHHHHHHHHHHhhhCCcchhHHHH
Confidence 345566666664 457889999999998888 9999999999999876 22 2335
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~l 285 (521)
.+|.+|+++|..+|+-+....+ |++|.+.+ ..+.++..+...|...+..+.|-++|+.+++.+.
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kV--------FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------- 1561 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKV--------FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------- 1561 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHH--------HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-------
Confidence 7999999999999988888777 88887643 4467777777777777777777777777665432
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCch
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV---HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~~~vwi~ya~~e~~~g~~~ 362 (521)
....+|..|++|+.++.+-+.|+.++.|||+.-| |+.+--.+|+++.++|+
T Consensus 1562 ------------------------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD-- 1615 (1710)
T KOG1070|consen 1562 ------------------------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD-- 1615 (1710)
T ss_pred ------------------------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC--
Confidence 1246999999999999999999999999999865 78888889999999999
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+++|.+|+--+..+|+ |..+|..|++.|..+|+...++.+.+|.
T Consensus 1616 -aeRGRtlfEgll~ayPK------RtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1616 -AERGRTLFEGLLSAYPK------RTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred -chhhHHHHHHHHhhCcc------chhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999999999997 4679999999999999999999998776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-13 Score=151.22 Aligned_cols=247 Identities=9% Similarity=-0.036 Sum_probs=161.1
Q ss_pred ccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 90 KERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
++++.|... .+++ ..+|+....+.++......|+++.|...|++++...| ....|..++......|
T Consensus 490 ~~~~eAi~a~~~Al--~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p----~~~a~~~la~all~~G------- 556 (987)
T PRK09782 490 TLPGVALYAWLQAE--QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM----SNEDLLAAANTAQAAG------- 556 (987)
T ss_pred CCcHHHHHHHHHHH--HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHCC-------
Confidence 566666666 6666 6666433344455555666777777777777655422 2233555555555555
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
+++.|..+|++++...|... .++..+.......|+.+.|... |++++..+|. ..
T Consensus 557 ---------------d~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr~~eAl~~--------~~~AL~l~P~-~~ 610 (987)
T PRK09782 557 ---------------NGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQPELALND--------LTRSLNIAPS-AN 610 (987)
T ss_pred ---------------CHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCC-HH
Confidence 77777777777777766553 3333333223344777777665 7777777775 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
+|..++.++.+.|+.++|...|++++...|.+. ++.+....|+++.|+.+|++++...|.+ ..+|..++..+.
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~al~ 688 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Confidence 777777777777777777777777777777665 4555666777777777777777755532 456667777777
Q ss_pred hcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 324 GQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..|+++.|...|++++...| ...+-..++.++....+ +.+|.+.+.|+....+.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~---~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN---FRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH---HHHHHHHHHHHhhcCcc
Confidence 77777777777777777776 45666666666666555 77777777777766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=147.80 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=195.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|..++.++.. +..+.|..+|.+++...|+ + .....++......| +++.|
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~-~~~L~lA~al~~~G----------------------r~eeA 528 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---A-WQHRAVAYQAYQVE----------------------DYATA 528 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---h-HHHHHHHHHHHHCC----------------------CHHHH
Confidence 36789999999987 7888999999999998763 2 12344444445566 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...|++++...|.. ..+..++....+.|+...+... |++++..+|.+...+..++......|++++|..
T Consensus 529 i~~~rka~~~~p~~---~a~~~la~all~~Gd~~eA~~~--------l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 529 LAAWQKISLHDMSN---EDLLAAANTAQAAGNGAARDRW--------LQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHHHHHhccCCCc---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999988775554 3466777777889999988877 999999999998887776666667799999999
Q ss_pred HHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-
Q psy8681 269 TYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV- 343 (521)
Q Consensus 269 ~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~- 343 (521)
.|++|+...|... ++.+...+|+++.|...|++++...|.+ ..++..++.++...|+++.|+.+|++++...|
T Consensus 598 ~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 598 DLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999633 5777889999999999999999977653 57899999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|+..|++|+...|++.
T Consensus 676 ~~~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 676 DPALIRQLAYVNQRLDD---MAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCc
Confidence 78999999999999999 9999999999999999874
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-12 Score=135.56 Aligned_cols=317 Identities=20% Similarity=0.283 Sum_probs=219.0
Q ss_pred CCCchhhhhhH-HHHHH-HHHHhcCChhhhhhhcC--CCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH
Q psy8681 49 AKPNLKLLEKA-KAWKK-AMEEKQGNKIGEEGANK--ENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQ 122 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife--~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~ 122 (521)
+..+++..|++ .+|-. -.... ++++--.+.. ++. ...+.+|.+ ..++ ..+| ....|..++.++.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~--~f~~wt~li~~~~~~-----~~~~~~r~~y~~fL--~kyPl~~gyW~kfA~~E~k 91 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSL--DFDAWTTLIQENDSI-----EDVDALREVYDIFL--SKYPLCYGYWKKFADYEYK 91 (577)
T ss_pred cchhhhhCcchhhHhhccccchh--cccchHHHHhccCch-----hHHHHHHHHHHHHH--hhCccHHHHHHHHHHHHHH
Confidence 45677889999 99965 11000 1111111111 111 123678888 8999 9999 68899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.|..+.+.+||++++..+| .+..+|.+|..+..... +..+..|..|++|+..+..+
T Consensus 92 lg~~~~s~~Vfergv~aip---~SvdlW~~Y~~f~~n~~---------------------~d~~~lr~~fe~A~~~vG~d 147 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQAIP---LSVDLWLSYLAFLKNNN---------------------GDPETLRDLFERAKSYVGLD 147 (577)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhccC---------------------CCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999986 57899999999887543 36677999999999987665
Q ss_pred h-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH-HHHHHHHc-----CCHHHHHHHHHHHHH
Q psy8681 203 R-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD-YLRLLEDE-----GNADLIRETYERAIA 275 (521)
Q Consensus 203 ~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~-y~~~~~~~-----g~~~~Ar~~~erAl~ 275 (521)
. +..+|..|+.|+...++...+..+ |++.|...-+.+..+++ |...+.+. -..+++..+-.....
T Consensus 148 F~S~~lWdkyie~en~qks~k~v~~i--------yeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~ 219 (577)
T KOG1258|consen 148 FLSDPLWDKYIEFENGQKSWKRVANI--------YERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE 219 (577)
T ss_pred hhccHHHHHHHHHHhccccHHHHHHH--------HHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh
Confidence 2 458999999999888887777766 88888754344333332 22222111 112222111111000
Q ss_pred --cC-----Cchh----------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCC------CcHHH
Q psy8681 276 --NI-----PPTK----------------------------FAELESLLGDMERARAIYELAISQPRLD------MPELV 314 (521)
Q Consensus 276 --~~-----P~~~----------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~------~~~~l 314 (521)
.. |... --.++...-.....+..|+..|..|... ..-..
T Consensus 220 ~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~n 299 (577)
T KOG1258|consen 220 RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKN 299 (577)
T ss_pred hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHH
Confidence 00 0000 1123334456667788888888865321 12467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
|..|++|+...|+++.+.-+|++++..|- +.++|+.|+.+..+.|. .+-|..++.+|.+.+-... ..+-..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~---~~~~~~~~~~~~~i~~k~~-----~~i~L~ 371 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD---VSLANNVLARACKIHVKKT-----PIIHLL 371 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc---hhHHHHHHHhhhhhcCCCC-----cHHHHH
Confidence 99999999999999999999999998774 78899999999999887 9999999999998754331 356777
Q ss_pred HHHHHHHcCCHHHHHHHHhhC
Q psy8681 394 WKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|..||+..||...++.+++++
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 888999999988887776554
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-13 Score=134.65 Aligned_cols=296 Identities=18% Similarity=0.306 Sum_probs=215.1
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
++-| ..+| ++..|..+++-.... .++++|.+|++.+..+| ..+.+|..|+..+...+
T Consensus 10 ~~ri--e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP---~s~r~W~~yi~~El~sk---------------- 67 (656)
T KOG1914|consen 10 RERI--EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP---SSPRAWKLYIERELASK---------------- 67 (656)
T ss_pred HHHH--hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhh----------------
Confidence 4556 7899 899999999987666 99999999999999987 47899999999998888
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhh---CCCCHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNS---NPNNYDAWFDY 253 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~---~P~~~~~W~~y 253 (521)
+++....+|.+||...- ...||..|+..-++. |...+....+ ...|+-++.. ++.++.+|..|
T Consensus 68 ------dfe~VEkLF~RCLvkvL---nlDLW~lYl~YVR~~~~~~~~~r~~m----~qAy~f~l~kig~di~s~siW~eY 134 (656)
T KOG1914|consen 68 ------DFESVEKLFSRCLVKVL---NLDLWKLYLSYVRETKGKLFGYREKM----VQAYDFALEKIGMDIKSYSIWDEY 134 (656)
T ss_pred ------hHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHccCcchHHHHH----HHHHHHHHHHhccCcccchhHHHH
Confidence 99999999999997632 248999999876644 3333322111 1235555553 67788888888
Q ss_pred HHHHHH---------cCCHHHHHHHHHHHHHcCCchh-------------------------------------------
Q psy8681 254 LRLLED---------EGNADLIRETYERAIANIPPTK------------------------------------------- 281 (521)
Q Consensus 254 ~~~~~~---------~g~~~~Ar~~~erAl~~~P~~~------------------------------------------- 281 (521)
+.++.. +.+++.+|.+|+||+.. |-..
T Consensus 135 i~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~ 213 (656)
T KOG1914|consen 135 INFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN 213 (656)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 888753 23677888888888763 3211
Q ss_pred -----------------------------------------------------------------------HHHHHHHcC
Q psy8681 282 -----------------------------------------------------------------------FAELESLLG 290 (521)
Q Consensus 282 -----------------------------------------------------------------------~a~le~~~g 290 (521)
|+.+....+
T Consensus 214 lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s 293 (656)
T KOG1914|consen 214 LTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS 293 (656)
T ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 222222223
Q ss_pred C--------------HHHHHHHHHHHHcCC--------------------------------------CCCCcHHHHHHH
Q psy8681 291 D--------------MERARAIYELAISQP--------------------------------------RLDMPELVWKAY 318 (521)
Q Consensus 291 ~--------------~e~Ar~ife~al~~~--------------------------------------~~~~~~~lw~~y 318 (521)
+ .++|.++|+++|... .. ....+|+.|
T Consensus 294 ~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-~~tLv~~~~ 372 (656)
T KOG1914|consen 294 DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-DLTLVYCQY 372 (656)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-CCceehhHH
Confidence 3 678888888887420 01 124678899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEF 397 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~f 397 (521)
++|-.+...+..||.+|.+|-+..- ...|++.-|.+|..+.. +..-|-.||+-++.++++.+ ....+|.+|
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk--D~~~AfrIFeLGLkkf~d~p------~yv~~Yldf 444 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK--DKETAFRIFELGLKKFGDSP------EYVLKYLDF 444 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC--ChhHHHHHHHHHHHhcCCCh------HHHHHHHHH
Confidence 9999899999999999999988652 35677776666655432 38899999999999999986 488899999
Q ss_pred HHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEEEEeecCCc
Q psy8681 398 EAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445 (521)
Q Consensus 398 E~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~~d~if~e~ 445 (521)
-...|+...++.+.++. +++ .+ +-+..-.+|.-|++|.+.=+
T Consensus 445 L~~lNdd~N~R~LFEr~---l~s--~l-~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERV---LTS--VL-SADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHhCcchhHHHHHHHH---Hhc--cC-ChhhhHHHHHHHHHHHHhcc
Confidence 99999999999998887 433 11 11211248999999976654
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=131.58 Aligned_cols=252 Identities=21% Similarity=0.297 Sum_probs=195.0
Q ss_pred hHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH
Q psy8681 95 EEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 95 Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~ 172 (521)
...+ .+++ ..+| ++.+|..|+.|..+.+.+.+..++|..++...| .++.+|+..|.++...+
T Consensus 90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp---~~~dLWI~aA~wefe~n----------- 153 (568)
T KOG2396|consen 90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP---NNPDLWIYAAKWEFEIN----------- 153 (568)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCchhHHhhhhhHHhhc-----------
Confidence 4445 7788 8888 899999999999999999999999999999955 57899999999988776
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh----------------HHHHH--------
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG----------------IEDVI-------- 228 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~----------------a~~~i-------- 228 (521)
.+++.||++|.++|..+|.+. .+|..|..+|-.+-.... ++...
T Consensus 154 ----------~ni~saRalflrgLR~npdsp--~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~ 221 (568)
T KOG2396|consen 154 ----------LNIESARALFLRGLRFNPDSP--KLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYAN 221 (568)
T ss_pred ----------cchHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc
Confidence 158999999999999999987 899999988865522111 10000
Q ss_pred -----------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------------------C-CHHHH
Q psy8681 229 -----------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE------------------G-NADLI 266 (521)
Q Consensus 229 -----------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~------------------g-~~~~A 266 (521)
...++..+.-.....|.++.+|..++.-...- | ..+..
T Consensus 222 s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~ 301 (568)
T KOG2396|consen 222 SVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRC 301 (568)
T ss_pred chhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHH
Confidence 01233444555556788888887776654320 0 23345
Q ss_pred HHHHHHHHHcCCchh-----------------------------------------------------------------
Q psy8681 267 RETYERAIANIPPTK----------------------------------------------------------------- 281 (521)
Q Consensus 267 r~~~erAl~~~P~~~----------------------------------------------------------------- 281 (521)
..+|+.++..+|...
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l 381 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKL 381 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHh
Confidence 567777777666543
Q ss_pred --------------------------------------------------------------------------------
Q psy8681 282 -------------------------------------------------------------------------------- 281 (521)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (521)
T Consensus 382 ~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 382 TTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred hHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceee
Confidence
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ--GERDKVRELHERLLERT-VHVKVWMNYAQF 354 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~--g~~~~Ar~l~eral~~~-~~~~vwi~ya~~ 354 (521)
|..+....|.+..||.+|.+....||+ +..++..+|+||..+ .++..+|.+|++++.-+ .++.+|..|..+
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~--sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPF--SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCc--cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 666677889999999999999888875 467999999998764 46899999999999877 589999999999
Q ss_pred HHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 355 EMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 355 e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+..+|. .+.|-.+|.||...+.
T Consensus 540 e~~~g~---~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 540 ELPLGR---PENCGQIYWRAMKTLQ 561 (568)
T ss_pred hccCCC---cccccHHHHHHHHhhC
Confidence 999998 8999999999998764
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-13 Score=140.20 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=199.1
Q ss_pred cchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH-----HHHHHHHHHHhhhh-
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK-----LFIAFAKFEEGQRE- 162 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~-----lw~~~a~~e~~~~~- 162 (521)
+..+|..+ ++.. ..|+ ...+...+|..+...++++.|+++|+.+-...|--....+ +|..--.+....-+
T Consensus 334 ~~~~A~~~~~klp--~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLP--SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhH--HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45677777 7765 6677 4566677888888899999999999998887553222222 22211111110000
Q ss_pred -hccccchhhHHHHH--hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 163 -KYGDRAGIEDVIVS--KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 163 -~~~~~~~~~~~~l~--~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
.......-+..|.. ..+.-++++++|...|++|++.+|... ..|..++.=.......+.+... |..|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~--------fr~A 481 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKS--------FRKA 481 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHH--------HHhh
Confidence 00000111122221 112224699999999999999999754 3444433222222334555554 9999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
|..+|.+|.+|+.++..+.+.+..+.|.-.|++|+.++|.+. ++.++..+|..+.|..+|++|+..+|.++-..+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 999999999999999999999999999999999999999876 678899999999999999999998776533233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
- -+.++...+.+++|...++.+-+.-| ...++..++..+...|+ .+.|..-|-=|....|..
T Consensus 562 ~--~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~---~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 H--RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN---TDLALLHFSWALDLDPKG 624 (638)
T ss_pred H--HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc---chHHHHhhHHHhcCCCcc
Confidence 2 35667788999999999999999887 57789999999999998 899999999999888864
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-12 Score=133.59 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=188.5
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.|++++|..+ ...| ...| ....|..++..+++.|+.+++...+-.|-.+.| .+..+|..++.+...++
T Consensus 152 rg~~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p---~d~e~W~~ladls~~~~----- 221 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP---KDYELWKRLADLSEQLG----- 221 (895)
T ss_pred hCCHHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcc-----
Confidence 4778888888 8888 7888 678888888888888888888777777766654 35578888888888777
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.+.+|+-+|.+||+..|.+. .+.-....+.+++|+...+... |.+++..+|..
T Consensus 222 -----------------~i~qA~~cy~rAI~~~p~n~--~~~~ers~L~~~~G~~~~Am~~--------f~~l~~~~p~~ 274 (895)
T KOG2076|consen 222 -----------------NINQARYCYSRAIQANPSNW--ELIYERSSLYQKTGDLKRAMET--------FLQLLQLDPPV 274 (895)
T ss_pred -----------------cHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHhChHHHHHHH--------HHHHHhhCCch
Confidence 88888888888888888876 6666677778888887777665 77777777732
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------Cchh----------------------------------
Q psy8681 247 -----YDAWFDYLRLLEDEGNADLIRETYERAIANI------PPTK---------------------------------- 281 (521)
Q Consensus 247 -----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~------P~~~---------------------------------- 281 (521)
.+.-..++..+...++.+.|.+.++.++... |+..
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1222334444555555577777777766621 1111
Q ss_pred -----------------------------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 282 -----------------------------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 282 -----------------------------------------------------------------~a~le~~~g~~e~Ar 296 (521)
.+.+....|.+..|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 356677889999999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+|..++..++.. ...+|...+..+...|.++.|...|+++|...| +.++-+.++.+....|+ .++|..++++.+
T Consensus 435 ~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~---~EkalEtL~~~~ 510 (895)
T KOG2076|consen 435 RLLSPITNREGYQ-NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN---HEKALETLEQII 510 (895)
T ss_pred HHHHHHhcCcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC---HHHHHHHHhccc
Confidence 9999999987654 367999999999999999999999999999987 78899999999999998 898888888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=128.60 Aligned_cols=271 Identities=10% Similarity=0.027 Sum_probs=210.9
Q ss_pred HhcCChhhhhhhcC-C------CcH--------HHhcccchhhHHH-HhhhccCCCCCh--hhHHHHHHHHHHcCChhHH
Q psy8681 68 EKQGNKIGEEGANK-E------NEE--------EERDKERDREEED-ERKDEGDRDSDT--TYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 68 ~~~gn~~~Ar~ife-~------P~~--------e~r~g~~e~Ar~~-eral~~~~~P~~--~~W~~~a~~e~~~g~~~~A 129 (521)
...||++.|++... . |.- ..+.|+++.|... .++. ...|+. ......+.+....|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~--~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA--ELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 34599999998888 2 221 4788999999999 9999 888854 3344558899999999999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH--HHH
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT--AEI 207 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~--~~l 207 (521)
...++++++..| .++.+....+......| +++.|..++....+..+.+.. ..+
T Consensus 173 l~~l~~~~~~~P---~~~~al~ll~~~~~~~g----------------------dw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 173 RHGVDKLLEVAP---RHPEVLRLAEQAYIRTG----------------------AWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999866 35677777778887777 999999999998877554321 111
Q ss_pred H-HHHHHHHH---HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHH
Q psy8681 208 Y-KAYTIHEK---KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283 (521)
Q Consensus 208 ~-~~~~~~e~---~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a 283 (521)
. ..|..+.. ...+.+.+..+ ++......|+++.++..|+..+...|+.+.|..+++++++..|+...+
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~--------w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~ 299 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRW--------WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV 299 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHH--------HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 1 22222111 11222222222 344434457799999999999999999999999999999965544433
Q ss_pred HHHH--HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCc
Q psy8681 284 ELES--LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 284 ~le~--~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~ 361 (521)
.++. ..|+.+.+....+..++..|.+ ..+...++.+....|++++|+..|++++...|+...++.++..+...|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~- 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK- 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-
Confidence 3333 4499999999999999977754 5789999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy8681 362 DSVSLARRVFERANQAL 378 (521)
Q Consensus 362 ~~~~~AR~vferAl~~~ 378 (521)
.+.|..+|++++...
T Consensus 377 --~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 --PEEAAAMRRDGLMLT 391 (398)
T ss_pred --HHHHHHHHHHHHhhh
Confidence 999999999998865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-11 Score=126.67 Aligned_cols=271 Identities=10% Similarity=-0.025 Sum_probs=205.0
Q ss_pred HHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCCh--hhHHHHHHHHHHcCChh
Q psy8681 66 MEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSDT--TYGMRELVFEEQNGFVS 127 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~~--~~W~~~a~~e~~~g~~~ 127 (521)
+....|++..|++.+. .|+. ..+.|+++.|..+ .++. ..+|+. .+...++.+....|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~--~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA--ELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4456788888888877 3432 5566888888888 8888 778843 46666788888888888
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-H-
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-A- 205 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~- 205 (521)
.|+..+++.++..| .++.++..++......| +++.|..++...++..+.+.. .
T Consensus 171 ~Al~~l~~l~~~~P---~~~~~l~ll~~~~~~~~----------------------d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 171 AARHGVDKLLEMAP---RHKEVLKLAEEAYIRSG----------------------AWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHcCCCCHHHHH
Confidence 88888888888865 35667777777777777 889999998888876322211 0
Q ss_pred ----HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 206 ----EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP----NNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 206 ----~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P----~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.+|..++. .|..+... ..+..+....| +++.++..++..+...|+.+.|..+++++++..
T Consensus 226 ~l~~~a~~~~l~----~~~~~~~~--------~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 226 DLEQKAEIGLLD----EAMADEGI--------DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHHHHHHHHH----HHHHhcCH--------HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 11211111 11111111 22666667677 699999999999999999999999999999999
Q ss_pred CchhH---HHH----HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--HHHhcCCCHHHH
Q psy8681 278 PPTKF---AEL----ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE--RLLERTVHVKVW 348 (521)
Q Consensus 278 P~~~~---a~l----e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e--ral~~~~~~~vw 348 (521)
|++.. ..+ ....++...++..++++++..|.++...+..+++.++.+.|++++|++.|+ .++...|++..+
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 98761 111 223578899999999999977765322677888999999999999999999 577788988888
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 349 MNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 349 i~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
..++..+...|+ .+.|+.+|++|+...
T Consensus 374 ~~La~ll~~~g~---~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 374 AMAADAFDQAGD---KAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 899999999998 999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-11 Score=119.06 Aligned_cols=268 Identities=16% Similarity=0.111 Sum_probs=197.4
Q ss_pred hcccchhhHHH-HhhhccCC-CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh---
Q psy8681 88 RDKERDREEED-ERKDEGDR-DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR--- 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~-~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~--- 161 (521)
+....++++.- ++.+ .. +| +.-+=...|...-...++++|..+|+..++..|=...+-+++.+..-....+.
T Consensus 239 el~q~~e~~~k~e~l~--~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLS--SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 34467788888 8877 66 78 44444444555556679999999999999986644344455544322111110
Q ss_pred ---------hhccc--cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHh
Q psy8681 162 ---------EKYGD--RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVS 230 (521)
Q Consensus 162 ---------~~~~~--~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~ 230 (521)
.+|.. +.-+.+. +.-.++.+.|...|++||+.+|... .+|...+.=.....+...|...
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNY-----YSlr~eHEKAv~YFkRALkLNp~~~--~aWTLmGHEyvEmKNt~AAi~s--- 386 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANY-----YSLRSEHEKAVMYFKRALKLNPKYL--SAWTLMGHEYVEMKNTHAAIES--- 386 (559)
T ss_pred HHHHHHHHhccCCccceeeehhH-----HHHHHhHHHHHHHHHHHHhcCcchh--HHHHHhhHHHHHhcccHHHHHH---
Confidence 01110 0000000 0112588999999999999999877 7899888765666777778777
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
|.+|+..||.|+.+|+.+|+.+...+-+.-|.-.|++|+..-|.+. +++.+.+++..+.|.+.|.+|+..
T Consensus 387 -----YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 387 -----YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred -----HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999877 788899999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
... ...+....++++.+.++..+|-..|++.++.. + ..++-+-++.++.+.++ +++|-....+++..
T Consensus 462 ~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~---~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD---FDEASYYATLVLKG 536 (559)
T ss_pred ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHhcC
Confidence 543 24566677889999999999999999999842 3 23444447888888877 77777666665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-12 Score=116.28 Aligned_cols=190 Identities=22% Similarity=0.281 Sum_probs=161.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----H
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----F 282 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~ 282 (521)
...++--..+.|+...|..- ++++|..+|+++.+|..++.++...|..+.|.+.|++|++..|.+. |
T Consensus 38 rlqLal~YL~~gd~~~A~~n--------lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKN--------LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 33333334467998888766 9999999999999999999999999999999999999999999876 9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~ 361 (521)
+.|...+|.++.|..-|++|+..|..-.+...|...+-.-.+.|..+.|+..|+++|...| .+......+..+...|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~- 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD- 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc-
Confidence 9999999999999999999999875544556666666666689999999999999999987 58889999999999988
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 362 DSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 362 ~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+-.||..|++-....+.+. ..||..|. |++..||...+..-...+
T Consensus 189 --y~~Ar~~~~~~~~~~~~~A-----~sL~L~ir-iak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 189 --YAPARLYLERYQQRGGAQA-----ESLLLGIR-IAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred --chHHHHHHHHHHhcccccH-----HHHHHHHH-HHHHhccHHHHHHHHHHH
Confidence 9999999999988877553 35666665 999999999887766554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=133.79 Aligned_cols=263 Identities=10% Similarity=-0.032 Sum_probs=192.0
Q ss_pred ChhhHHHHHHHH--HHc---CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 109 DTTYGMRELVFE--EQN---GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 109 ~~~~W~~~a~~e--~~~---g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
+.+.|..|..-. ... ++++.|...|++|++..| .+...|..++.+....+ ..+. ....+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP---~~a~a~~~La~~~~~~~-~~g~------------~~~~~ 318 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP---NSIAPYCALAECYLSMA-QMGI------------FDKQN 318 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHH-HcCC------------cccch
Confidence 456555554432 221 346799999999999965 45667776666544332 0000 00112
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|...+++|++..|.+. ..|..++......|+.+.|... |++++..+|+++.+|..++.++...|++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNP--QALGLLGLINTIHSEYIVGSLL--------FKQANLLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 68999999999999999987 7788888888889999999877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP-RLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
++|...|++|+...|... .+.+....|+++.|...+++++... |. ....+..++.++...|++++|+..+.+
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999864 2334556899999999999998753 33 245666677788899999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 338 LLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 338 al~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
++...|. ...+..++......| +.|...+++.+........ -......|+.-+|+.+...-.
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g-----~~a~~~l~~ll~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 467 ISTQEITGLIAVNLLYAEYCQNS-----ERALPTIREFLESEQRIDN------NPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hhhccchhHHHHHHHHHHHhccH-----HHHHHHHHHHHHHhhHhhc------CchHHHHHHHHHhhhHHHHHH
Confidence 8877764 555666666655554 3777777776654432211 111145566677888766555
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=133.37 Aligned_cols=311 Identities=16% Similarity=0.186 Sum_probs=215.7
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH-----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC--
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE-----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-- 124 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-- 124 (521)
.++...||++.|...|- .|++ ++..|+++.|... ++.+ ...| +.++-..+|.++...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~--k~~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL--KQLPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH--HhCcchHHHHHHHHhHHHhhhhh
Confidence 88999999999999997 4544 9999999999999 9999 9999 6888999999988775
Q ss_pred --ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh-----hccccch--------hhHHHHHh---hhhhhhhHH
Q psy8681 125 --FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE-----KYGDRAG--------IEDVIVSK---RKFQYEEHE 186 (521)
Q Consensus 125 --~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~-----~~~~~~~--------~~~~~l~~---~~~~~~~~e 186 (521)
..+.|..+..+++...| .+...|+.++.+.+.... .|.++.. ++-.+|+. -.+..|.++
T Consensus 393 ~~~~d~a~~~l~K~~~~~~---~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTP---VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 56889999999998864 578899999988776550 1222211 22222322 234558999
Q ss_pred HHHHHHHHHHhcC-----Chh---hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 187 RARVIYKYALDHI-----PKD---RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 187 ~Ar~iy~~aL~~~-----P~~---~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
.|...|..|+..+ +.. ....+-..++.+....++++.|... |...+..+|...+.++.++.+..
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~--------Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM--------YKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH--------HHHHHHHCchhHHHHHHhhHHHH
Confidence 9999999999872 111 1112334445666677777777765 66666666666666666655555
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh------------------------------------H-----HHH------------
Q psy8681 259 DEGNADLIRETYERAIANIPPTK------------------------------------F-----AEL------------ 285 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~------------------------------------~-----a~l------------ 285 (521)
..++..+|...+..++..+..+. | +++
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 55555555555555555432211 1 221
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCch
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKA--YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~--yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~ 362 (521)
+...+..++|.++|.+++...|.+ +|.+ .+-.+...|++..|+.+|.+..+... ...+|+++|.++..+|+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN----~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q-- 695 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKN----MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ-- 695 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcch----hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH--
Confidence 224567888899999998877654 4443 33456788999999999999888764 78899999999988887
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWK 395 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~ 395 (521)
+-.|.++|+.++..+-.+.+.+--..|-.+|.
T Consensus 696 -y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 696 -YRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred -HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999999999988765433222233444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-11 Score=120.46 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=168.3
Q ss_pred ChhHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 125 FVSGARKVYERAVEFFGEEN-LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 125 ~~~~Ar~vye~Al~~~~~~~-~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
..+.++.-+.++|...+..+ ..+..|...+......| .++.|+..|+++++..|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~Al~l~P~~~ 98 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG----------------------LRALARNDFSQALALRPDMA 98 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHcCCCCH
Confidence 45667777777776543222 23567777777777777 88999999999999999876
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--
Q psy8681 204 TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-- 281 (521)
Q Consensus 204 ~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-- 281 (521)
..|..++......|+.+.|... |++++..+|.+..+|..++..+...|++++|...|++++...|.+.
T Consensus 99 --~a~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 168 (296)
T PRK11189 99 --DAYNYLGIYLTQAGNFDAAYEA--------FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR 168 (296)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7888888888899999988876 9999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------cCC-CHHHHHHH
Q psy8681 282 --FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE-------RTV-HVKVWMNY 351 (521)
Q Consensus 282 --~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~-------~~~-~~~vwi~y 351 (521)
+..+....++.+.|...|.+++...+. ..|. +.......|++..+ ..++.+.. ..| ....|..+
T Consensus 169 ~~~~~l~~~~~~~~~A~~~l~~~~~~~~~----~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~L 242 (296)
T PRK11189 169 ALWLYLAESKLDPKQAKENLKQRYEKLDK----EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYL 242 (296)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCc----cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 233445678899999999887753221 1333 23333446666554 34555443 222 46789999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+......|+ ++.|+..|++|+...|.+ ..+.|..+++
T Consensus 243 g~~~~~~g~---~~~A~~~~~~Al~~~~~~-~~e~~~~~~e 279 (296)
T PRK11189 243 AKYYLSLGD---LDEAAALFKLALANNVYN-FVEHRYALLE 279 (296)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHhCCch-HHHHHHHHHH
Confidence 999999998 999999999999988743 2234444444
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=134.41 Aligned_cols=245 Identities=15% Similarity=-0.001 Sum_probs=196.8
Q ss_pred HHHHH----HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHH-H-HhhhccCCCC-ChhhHHHHH
Q psy8681 60 KAWKK----AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEE-D-ERKDEGDRDS-DTTYGMREL 117 (521)
Q Consensus 60 ~~W~~----~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~-~-eral~~~~~P-~~~~W~~~a 117 (521)
.-|.. ..+-.+++|+.|.++|+ .|-- .--+.+ +-+.. + .-.+ ...| ++..|..+|
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-~v~Ls~Laq~Li--~~~~~sPesWca~G 428 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-EVALSYLAQDLI--DTDPNSPESWCALG 428 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-hHHHHHHHHHHH--hhCCCCcHHHHHhc
Confidence 44776 55666789999999998 4532 001111 12222 3 5667 7888 799999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 118 VFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 118 ~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
+++.-+++.+.|++.|+||+.+.|. ..-.+.-++.-..... +++.|...|+.||.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~---faYayTLlGhE~~~~e----------------------e~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPR---FAYAYTLLGHESIATE----------------------EFDKAMKSFRKALG 483 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCc---cchhhhhcCChhhhhH----------------------HHHhHHHHHHhhhc
Confidence 9999999999999999999998542 2223222222222222 89999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.+|.+- ..|..++-...+.+..+.|+-. |++|+..||.+..+-.-++..+.+.|..++|..+|++|+...
T Consensus 484 ~~~rhY--nAwYGlG~vy~Kqek~e~Ae~~--------fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 484 VDPRHY--NAWYGLGTVYLKQEKLEFAEFH--------FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred CCchhh--HHHHhhhhheeccchhhHHHHH--------HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 999987 7899999888889988888855 999999999999999999999999999999999999999999
Q ss_pred Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 278 PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 278 P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
|.+. .+.+...+++++.|...++..-..-|. ...++...+..+.+.|+.+.|..-|--|+...|.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9877 467778899999999999998885553 3567888889999999999999999999998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=132.61 Aligned_cols=239 Identities=10% Similarity=-0.047 Sum_probs=185.6
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN---------GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~---------g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~ 158 (521)
+.++.|+.+ ++++ ...| +...|..++..+... ++++.|...+++|++..| .++.+|..++....
T Consensus 275 ~~~~~A~~~~~~Al--~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP---~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCV--NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH---NNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Confidence 356789999 9999 9999 688888888765532 347899999999999955 46788888888887
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..| ++++|...|++|++..|.+. ..|..++......|+.+.|... |++
T Consensus 350 ~~g----------------------~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~--------~~~ 397 (553)
T PRK12370 350 IHS----------------------EYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQT--------INE 397 (553)
T ss_pred Hcc----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HHH
Confidence 777 99999999999999999987 6788888888899999999877 999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
++..+|.++..+..++..+...|+.++|...+++++... |... ++.++..+|++++|+..+.++...++. ..
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~--~~ 475 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT--GL 475 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch--hH
Confidence 999999988776666666677899999999999999876 4333 566777899999999999998776553 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
..+......+...| +.|...++.+++.. +...-| ++.++.-.|+ .+.+.-+ .++.
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~---~~~~~~~-~~~~ 533 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGE---AIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhh---hHHHHHH-HHhh
Confidence 45555555555666 58999888887754 222223 5666666676 5666555 4444
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=122.80 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=197.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+.....-|.|..-.|+.-.|..-|..+|.+.| ....+++..+......+ ..+...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~---~~~~lyI~~a~~y~d~~----------------------~~~~~~ 380 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP---AFNSLYIKRAAAYADEN----------------------QSEKMW 380 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc---ccchHHHHHHHHHhhhh----------------------ccHHHH
Confidence 44566677777788999999999999999965 34556777777766665 667788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
..|..|.+.+|.+. .+|.--+++.--.++.+.|..- |++++.++|.+.-.+.+++-++.+.+.++++...
T Consensus 381 ~~F~~A~~ldp~n~--dvYyHRgQm~flL~q~e~A~aD--------F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 381 KDFNKAEDLDPENP--DVYYHRGQMRFLLQQYEEAIAD--------FQKAISLDPENAYAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred HHHHHHHhcCCCCC--chhHhHHHHHHHHHHHHHHHHH--------HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987 5555555554455666666644 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 270 YERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL------DMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 270 ~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~------~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
|+.++..+|... |++.....++++.|..-|..|+...|. ...+.+..+.+.+-. .+++..|..|+.++
T Consensus 451 Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 451 FEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKA 529 (606)
T ss_pred HHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHH
Confidence 999999999876 788888999999999999999985443 222344454444443 38999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCH
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~ 404 (521)
++..| +...++.+++++...|+ +++|..+|++++...... ..++.+|.--|...-+.
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt~------~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLARTE------SEMVHAYSLAEAARAQI 587 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhhhH
Confidence 99998 56688999999999998 999999999999887653 34666666444443433
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=123.16 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=182.6
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
-.|++-.|... +.+| ..+| .+.+++..+.++....+.+.-.+.|..|..+.| .++++|..-+++..-.+
T Consensus 338 L~g~~~~a~~d~~~~I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp---~n~dvYyHRgQm~flL~---- 408 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAI--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP---ENPDVYYHRGQMRFLLQ---- 408 (606)
T ss_pred hcCCchhhhhhHHHHH--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC---CCCchhHhHHHHHHHHH----
Confidence 35677777777 8888 9999 678899999999999999999999999999955 56789999888887776
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|..=|++|+.+.|.+. -.|..+...+.+.+..+..... |+.++..+|+
T Consensus 409 ------------------q~e~A~aDF~Kai~L~pe~~--~~~iQl~~a~Yr~~k~~~~m~~--------Fee~kkkFP~ 460 (606)
T KOG0547|consen 409 ------------------QYEEAIADFQKAISLDPENA--YAYIQLCCALYRQHKIAESMKT--------FEEAKKKFPN 460 (606)
T ss_pred ------------------HHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhCCC
Confidence 99999999999999999987 4455555555566666666655 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------H---H-HHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------F---A-ELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~---a-~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
.+.++..++..+...++++.|.+.|..|+.+-|... + + -+..-.+++.+|..++.+|++.+|. ...
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk--ce~ 538 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK--CEQ 538 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch--HHH
Confidence 999999999999999999999999999999988732 1 1 1122349999999999999998775 467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+..++.++.+.|++++|+++|++++...
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=110.54 Aligned_cols=195 Identities=20% Similarity=0.196 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHH
Q psy8681 147 EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED 226 (521)
Q Consensus 147 ~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~ 226 (521)
..++..++......+ +++.|...|++++...|.+. ..+..++.+....|+.+.+..
T Consensus 31 ~~~~~~la~~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 31 AKIRVQLALGYLEQG----------------------DLEVAKENLDKALEHDPDDY--LAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666666 99999999999999998876 677788888888999998887
Q ss_pred HHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--chh-----HHHHHHHcCCHHHHHHHH
Q psy8681 227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP--PTK-----FAELESLLGDMERARAIY 299 (521)
Q Consensus 227 ~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P--~~~-----~a~le~~~g~~e~Ar~if 299 (521)
. |++++...|.+..+|..++.++...|++++|...|++++...+ ... ++......|+++.|...|
T Consensus 87 ~--------~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 87 S--------FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred H--------HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7 9999999999999999999999999999999999999998532 111 566778899999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 300 ELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 300 e~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
.+++...|.+ ...|..++.++...|+++.|..+|++++...| ++..|...+......|+ .+.|+.+.+.+...+
T Consensus 159 ~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDPQR--PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCcCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence 9999866543 46788888889999999999999999998865 56777777888888887 899998888776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-11 Score=123.35 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=193.0
Q ss_pred hcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..+.+.....+++ .|-+ ....|+...--.+ -++| ..+| ++-.|...|-++...|.+.+||.
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV--~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV--DLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 3455666655555 4544 6667777778888 8999 9999 68899999999999999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY 211 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~ 211 (521)
.|.+|.... +.....|+.|+.-....+ +.++|...|-.|-+..|......+|.+
T Consensus 334 y~SKat~lD---~~fgpaWl~fghsfa~e~----------------------EhdQAmaaY~tAarl~~G~hlP~LYlg- 387 (611)
T KOG1173|consen 334 YFSKATTLD---PTFGPAWLAFGHSFAGEG----------------------EHDQAMAAYFTAARLMPGCHLPSLYLG- 387 (611)
T ss_pred HHHHHhhcC---ccccHHHHHHhHHhhhcc----------------------hHHHHHHHHHHHHHhccCCcchHHHHH-
Confidence 999999884 357889999998887777 999999999999999888764344443
Q ss_pred HHHHH-HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcC
Q psy8681 212 TIHEK-KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG 290 (521)
Q Consensus 212 ~~~e~-~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g 290 (521)
++- +.++..-|+.. |.+|+.++|.++-+...++-+....+.+.+|...|+.++...+..
T Consensus 388 --mey~~t~n~kLAe~F--------f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~---------- 447 (611)
T KOG1173|consen 388 --MEYMRTNNLKLAEKF--------FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV---------- 447 (611)
T ss_pred --HHHHHhccHHHHHHH--------HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc----------
Confidence 332 34566666665 888888888888888877777777777777777777766332210
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARR 369 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~ 369 (521)
....+ .-..+|...+...++.+.+..|+..|+++|..+| ++.++.+.|-.....|+ ++.|..
T Consensus 448 ------------~~e~~--~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid 510 (611)
T KOG1173|consen 448 ------------LNEKI--FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAID 510 (611)
T ss_pred ------------ccccc--chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHH
Confidence 00001 0134788888999999999999999999999986 78899999999999999 999999
Q ss_pred HHHHHHHHhccch
Q psy8681 370 VFERANQALKASS 382 (521)
Q Consensus 370 vferAl~~~~~~~ 382 (521)
.|.+|+..-|++.
T Consensus 511 ~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 511 HFHKALALKPDNI 523 (611)
T ss_pred HHHHHHhcCCccH
Confidence 9999999999873
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=129.14 Aligned_cols=126 Identities=25% Similarity=0.365 Sum_probs=95.4
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCch
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~ 362 (521)
+..+.+.++.||.+|.+|+..... ...+|..++.+|... ++...|+.+|+++++.++ ++.+|+.|+.|+...++
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d-- 85 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND-- 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT---
T ss_pred HHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc--
Confidence 333444456666666666643332 346899999998885 555669999999999986 68999999999999988
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
.+.||.+|+|++..++... ....||..|++||..+|+.+.+.+|.+++-..+
T Consensus 86 -~~~aR~lfer~i~~l~~~~---~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 86 -INNARALFERAISSLPKEK---QSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHH---HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998877642 146799999999999999999999988775443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-10 Score=109.81 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..+..++..+...|+++.|...|++++...| .+..++..++......| +++.|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~----------------------~~~~A 84 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLG----------------------ELEKA 84 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 367888999999999999999999999998754 35677777888777777 89999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--PNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
...|++++...|.+. ..+..++.+....|+.+.+... |++++... |.....|..++..+...|+.++|
T Consensus 85 ~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 85 EDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQAMQQ--------FEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999888765 6778888888888988888876 88888753 56678889999999999999999
Q ss_pred HHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 267 RETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 267 r~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
...|.+++...|... ++.+....|++++|...|++++...+. ....|...+.+....|+.+.|+.+.+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888754 567788899999999999999886443 2445556778888899999999988877654
Q ss_pred C
Q psy8681 342 T 342 (521)
Q Consensus 342 ~ 342 (521)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=106.47 Aligned_cols=198 Identities=18% Similarity=0.128 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...-+.++--+.+.|++..|+.-+++||+..| .+...|...+.+....| +.+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP---s~~~a~~~~A~~Yq~~G----------------------e~~~A~ 89 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP---SYYLAHLVRAHYYQKLG----------------------ENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------ChhhHH
Confidence 35667777778888888888888888888844 46778888888888887 888888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--NPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
.-|++|+...|.+- .+.+.|+.|.-..|.++.+... |++|+.. -|..+++|.+.+-+-.+.|+.+.|+
T Consensus 90 e~YrkAlsl~p~~G--dVLNNYG~FLC~qg~~~eA~q~--------F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 90 ESYRKALSLAPNNG--DVLNNYGAFLCAQGRPEEAMQQ--------FERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHHHHHHhcCCCcc--chhhhhhHHHHhCCChHHHHHH--------HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 88888888888876 7888888888888888887755 8888775 3456788999998888999999999
Q ss_pred HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 268 ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
..|+|++...|+.. .+.++..-|++..|+..+++-....+. .-..+|.. |.++...|+-+.+-..=.++...+
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~-~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA-QAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc-cHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999888765 566777888899999888887775442 23466665 688888888777766555555566
Q ss_pred CC
Q psy8681 343 VH 344 (521)
Q Consensus 343 ~~ 344 (521)
|.
T Consensus 238 P~ 239 (250)
T COG3063 238 PY 239 (250)
T ss_pred CC
Confidence 64
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=121.88 Aligned_cols=349 Identities=20% Similarity=0.202 Sum_probs=232.6
Q ss_pred CchhhhhhH-HHHHHHHHHhcCChhh---hhhhcC--CC--cH-----------HHhcccchhhHHH-HhhhccCCCCCh
Q psy8681 51 PNLKLLEKA-KAWKKAMEEKQGNKIG---EEGANK--EN--EE-----------EERDKERDREEED-ERKDEGDRDSDT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~~~e~~~gn~~~---Ar~ife--~P--~~-----------e~r~g~~e~Ar~~-eral~~~~~P~~ 110 (521)
.++...|-+ -.|+-.+....|+++. ||..+. -| .. -...++...+..+ ++++ .-.-++
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal--~dy~~v 183 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL--GDYNSV 183 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh--cccccc
Confidence 455555555 6665544455555544 555555 22 22 1223566777888 8998 777789
Q ss_pred hhHHHHHHHHHHcC-------ChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhh--h-------hcccc----ch
Q psy8681 111 TYGMRELVFEEQNG-------FVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQR--E-------KYGDR----AG 169 (521)
Q Consensus 111 ~~W~~~a~~e~~~g-------~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~--~-------~~~~~----~~ 169 (521)
.+|..++.|....+ +++..|.+|++||..++.+.. ...+|..|..|+...- . .+... +.
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D 263 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLD 263 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccch
Confidence 99999999998764 478899999999998775443 3789999888876432 0 00000 00
Q ss_pred h----hH--------HHHHhhh---hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 170 I----ED--------VIVSKRK---FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 170 ~----~~--------~~l~~~~---~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
. |. ++..... -.......-+..|+..++..|... ..|..|++|++..|+...+.-.
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~--q~~~~yidfe~~~G~p~ri~l~------- 334 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD--QEWMSYIDFEKKSGDPVRIQLI------- 334 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchHHHHH-------
Confidence 0 00 0000000 011233445566777777777665 7999999999999998887755
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCchh--------------------HHHH--------
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIANIPPTK--------------------FAEL-------- 285 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~~~P~~~--------------------~a~l-------- 285 (521)
+++++...+.+.+.|..|+.++-. .+-...+..++-||+.++|... +..|
T Consensus 335 -~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~ 413 (881)
T KOG0128|consen 335 -EERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV 413 (881)
T ss_pred -HHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999988643 3445556677788888777654 0111
Q ss_pred ---------HHHc------CCHHHHHHHHHHHHcC------CCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCC
Q psy8681 286 ---------ESLL------GDMERARAIYELAISQ------PRLDMPELVWKAYIDFEVG-QGERDKVRELHERLLERTV 343 (521)
Q Consensus 286 ---------e~~~------g~~e~Ar~ife~al~~------~~~~~~~~lw~~yi~~e~~-~g~~~~Ar~l~eral~~~~ 343 (521)
-... .+++.-++.|..|... ...+....+...|+.+|.. .++.+.+|.+....+....
T Consensus 414 ~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~ 493 (881)
T KOG0128|consen 414 ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG 493 (881)
T ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc
Confidence 1111 2344445556655431 1123334566666777665 5789999999998887653
Q ss_pred -CHH-HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH-HhhCchh
Q psy8681 344 -HVK-VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL-NSKLPRR 417 (521)
Q Consensus 344 -~~~-vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v-~~~~p~~ 417 (521)
... .|+.|+.++...|+ ...||.++++|+....++ ++-..+++.|..||+.+|+.+.+..+ ..++|+.
T Consensus 494 ~~iag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~~~---~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~ 564 (881)
T KOG0128|consen 494 GSIAGKWLEAINLEREYGD---GPSARKVLRKAYSQVVDP---EDALEVLEFFRRFEREYGTLESFDLCPEKVLPRV 564 (881)
T ss_pred chHHHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCcCc---hhHHHHHHHHHHHHhccccHHHHhhhHHhhcchh
Confidence 444 99999999999998 999999999998765544 34568999999999999999886544 4445543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=121.79 Aligned_cols=137 Identities=26% Similarity=0.480 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHH
Q psy8681 148 KLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIED 226 (521)
Q Consensus 148 ~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~ 226 (521)
-+|+.|.+|..+.+ .++.||.+|.+|+...+... .+|..++.+|..+ ++...|..
T Consensus 2 ~v~i~~m~~~~r~~----------------------g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~ 57 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE----------------------GIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARK 57 (280)
T ss_dssp HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHH
T ss_pred HHHHHHHHHHHHhC----------------------ChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHH
Confidence 37999999999988 89999999999996655445 7999999999985 45555776
Q ss_pred HHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 227 ~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
+ |+.+++..|.+.++|+.|+.++...|+.+.||.+|++++..+|....
T Consensus 58 I--------fe~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~------------------------ 105 (280)
T PF05843_consen 58 I--------FERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQ------------------------ 105 (280)
T ss_dssp H--------HHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH------------------------
T ss_pred H--------HHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH------------------------
Confidence 6 99999999999999999999999999999999999998887765310
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
...+|..|++||...|+++.++++++|+.+..|.
T Consensus 106 ----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 106 ----SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 2469999999999999999999999999998875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-09 Score=112.89 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=201.5
Q ss_pred ccchhhHHH-HhhhccCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 90 KERDREEED-ERKDEGDRDSDT-TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~~-~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
|+++.|+.. .+.. ...+++ -.++..+....+.|+++.|...|.+|.+..|+.. .......+.+....|
T Consensus 98 Gd~~~A~k~l~~~~--~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~--~~~~l~~a~l~l~~g------ 167 (398)
T PRK10747 98 GDYQQVEKLMTRNA--DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ--LPVEITRVRIQLARN------ 167 (398)
T ss_pred CCHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHCC------
Confidence 999999999 8876 543433 3455556676899999999999999998755311 112223356666676
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
+++.|...++++++..|.+. .+....+....+.|+.+.+..+ +.+..+..+.+.
T Consensus 168 ----------------~~~~Al~~l~~~~~~~P~~~--~al~ll~~~~~~~gdw~~a~~~--------l~~l~k~~~~~~ 221 (398)
T PRK10747 168 ----------------ENHAARHGVDKLLEVAPRHP--EVLRLAEQAYIRTGAWSSLLDI--------LPSMAKAHVGDE 221 (398)
T ss_pred ----------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhHHHHHHH--------HHHHHHcCCCCH
Confidence 99999999999999999987 6777778888888999988876 777777766544
Q ss_pred HH--------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 248 DA--------WFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 248 ~~--------W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
.. |..+........+.+....+++......|++. |+......|+.+.|..+.+.++..++ +..+
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~---~~~l 298 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY---DERL 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CHHH
Confidence 32 22222222222333333333333222223232 78889999999999999999999654 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
...|..+ ..++.+++....++.++.+| ++.+.+.++.++...++ +++|+..|++++...|++. .+..
T Consensus 299 ~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~~~-------~~~~ 366 (398)
T PRK10747 299 VLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPDAY-------DYAW 366 (398)
T ss_pred HHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCHH-------HHHH
Confidence 6666654 45999999999999999998 68889999999999998 9999999999999988752 3445
Q ss_pred HHHHHHHcCCHHHHHHHHhhC
Q psy8681 394 WKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+..+....|+.+.+..+.++-
T Consensus 367 La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677777899999887776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-10 Score=111.97 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=170.5
Q ss_pred ccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 90 KERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+..+.++.. .+++ ...| + ...|...|..+...|+.+.|+..|.+++...| .++.+|..++......|
T Consensus 40 ~~~e~~i~~~~~~l--~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~~~~~g-- 112 (296)
T PRK11189 40 LQQEVILARLNQIL--ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP---DMADAYNYLGIYLTQAG-- 112 (296)
T ss_pred hHHHHHHHHHHHHH--ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCC--
Confidence 445566666 6777 5333 2 67799999999999999999999999999965 46889999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|...|+++++..|... ..|...+......|..+.+... |++++..+
T Consensus 113 --------------------~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~eA~~~--------~~~al~~~ 162 (296)
T PRK11189 113 --------------------NFDAAYEAFDSVLELDPTYN--YAYLNRGIALYYGGRYELAQDD--------LLAFYQDD 162 (296)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhC
Confidence 99999999999999999887 6788888888888999999877 99999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHcCCHHHHHHHHHHHHc---CCCC-C-CcHHHHH
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLLGDMERARAIYELAIS---QPRL-D-MPELVWK 316 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~g~~e~Ar~ife~al~---~~~~-~-~~~~lw~ 316 (521)
|.++.. ..+..+....++.++|...|.+++...++.. ++.....+|+...+ ..++.+.. ..+. . .....|.
T Consensus 163 P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 163 PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 998731 1222234556789999999988776544333 34444556766544 34444443 1110 0 1235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEM 356 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~ 356 (521)
..+.++...|++++|+..|++++...|+..+=..|+.++.
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 8888899999999999999999999875444444554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=120.36 Aligned_cols=302 Identities=10% Similarity=-0.005 Sum_probs=191.7
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~ 127 (521)
.+.-+.|++..|+..|. .|.+ ....|+.+.|+.+ ++++ ...| +.......+.++...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 56678899999998888 4653 4577899999999 9988 5544 5566666688898999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
+|..+|+++++..|+ ++.++..++......+ +.+.|...+++++...|... .
T Consensus 120 ~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~----------------------q~~eAl~~l~~l~~~dp~~~---~ 171 (822)
T PRK14574 120 QALALWQSSLKKDPT---NPDLISGMIMTQADAG----------------------RGGVVLKQATELAERDPTVQ---N 171 (822)
T ss_pred HHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcC----------------------CHHHHHHHHHHhcccCcchH---H
Confidence 999999999998663 5677776666665555 66666666666666666532 2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-----------------------
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD----------------------- 264 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~----------------------- 264 (521)
+...+.+....+....+... |++++..+|.+.+++..|...+...|-..
T Consensus 172 ~l~layL~~~~~~~~~AL~~--------~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQA--------SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred HHHHHHHHHhcchHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 23333333223333233333 66666666666666666665555444221
Q ss_pred -------------------------HHHHHHHHHHH---cCCchh-----------------------------------
Q psy8681 265 -------------------------LIRETYERAIA---NIPPTK----------------------------------- 281 (521)
Q Consensus 265 -------------------------~Ar~~~erAl~---~~P~~~----------------------------------- 281 (521)
.|..-++..+. ..|...
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 22233333333 223211
Q ss_pred ---------HHHHHHHcCCHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----
Q psy8681 282 ---------FAELESLLGDMERARAIYELAISQPRL----DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH---- 344 (521)
Q Consensus 282 ---------~a~le~~~g~~e~Ar~ife~al~~~~~----~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~---- 344 (521)
.+..+..++..++|..+|..++...+. +........+.-.+...+.+++|..+.++.....|.
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 455566788888888888888774311 001110122222234778888888888888774331
Q ss_pred --------HHHHHH----HHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 345 --------VKVWMN----YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 345 --------~~vwi~----ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
.+-|.. .+....-.|+ ...|...++..+...|.++ .|+..+.+++..-|.+..++...+
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gd---l~~Ae~~le~l~~~aP~n~------~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALND---LPTAQKKLEDLSSTAPANQ------NLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122333 3555555676 8888888888888888874 577888888888888888777763
Q ss_pred h
Q psy8681 413 K 413 (521)
Q Consensus 413 ~ 413 (521)
.
T Consensus 475 ~ 475 (822)
T PRK14574 475 A 475 (822)
T ss_pred H
Confidence 3
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-09 Score=112.88 Aligned_cols=281 Identities=17% Similarity=0.116 Sum_probs=214.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
....|+++.|+.. .++. ...|+ ...++..+....+.|+++.|...|.++.+..|+. ...+...++.+....+
T Consensus 94 a~~~g~~~~A~~~l~~~~--~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~--~l~~~~~~a~l~l~~~-- 167 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNA--DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND--NILVEIARTRILLAQN-- 167 (409)
T ss_pred HHhCCCHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHHHCC--
Confidence 5678999999999 9999 88884 6678888999999999999999999999886632 1235555677777777
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|+..++..++..|.+. .++..++.+....|+.+.+... +.+.++..
T Consensus 168 --------------------~~~~Al~~l~~l~~~~P~~~--~~l~ll~~~~~~~~d~~~a~~~--------l~~l~k~~ 217 (409)
T TIGR00540 168 --------------------ELHAARHGVDKLLEMAPRHK--EVLKLAEEAYIRSGAWQALDDI--------IDNMAKAG 217 (409)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHcC
Confidence 99999999999999999987 7888899999999999988876 88888765
Q ss_pred CCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCch----h-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 244 PNNYDAWF----DYLRLLEDEGNADLIRETYERAIANIPPT----K-----FAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 244 P~~~~~W~----~y~~~~~~~g~~~~Ar~~~erAl~~~P~~----~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+.+..... ....-....+..+.....+..+....|.. . ++.+....|+.+.|..+++.+++..|.+.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 44433321 11111122333344556777788778843 2 77888999999999999999999655432
Q ss_pred cHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CH--HHHHHHHHHHHHcCCchhhHHHHHHHH--HHHHHhccchh
Q psy8681 311 PEL--VWKAYIDFEVGQGERDKVRELHERLLERTV-HV--KVWMNYAQFEMSSGDEDSVSLARRVFE--RANQALKASSE 383 (521)
Q Consensus 311 ~~~--lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~--~vwi~ya~~e~~~g~~~~~~~AR~vfe--rAl~~~~~~~~ 383 (521)
... +...++. ...++...+..+++++++..| ++ .+..+++.++...|+ +++|+..|+ .++...|++.
T Consensus 298 ~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~~~- 371 (409)
T TIGR00540 298 AISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLDAN- 371 (409)
T ss_pred cchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCCHH-
Confidence 211 3333332 335788999999999999987 56 677899999999998 999999999 5777777642
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+..+..+-...|+.+.+.++.++.
T Consensus 372 ------~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 372 ------DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446677777899999998887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-09 Score=104.11 Aligned_cols=308 Identities=12% Similarity=0.045 Sum_probs=203.4
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------cHHHHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------DEKLFIAFAKFE 157 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------~~~lw~~~a~~e 157 (521)
+...|....|+.. -..| ...| .-..|+.++.+.. +.+.+-. .+.-+|.+.. -..+|..+...+
T Consensus 174 ~k~~~~~s~A~~sfv~~v--~~~P~~W~AWleL~~lit---~~e~~~~----l~~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVV--NRYPWFWSAWLELSELIT---DIEILSI----LVVGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHhhchHHHHHHHHHHHH--hcCCcchHHHHHHHHhhc---hHHHHHH----HHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 4456777778888 7888 7778 6677777766653 2222221 1111121100 112222232222
Q ss_pred Hhhhhhcccc----chh---hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh----HHH
Q psy8681 158 EGQREKYGDR----AGI---EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG----IED 226 (521)
Q Consensus 158 ~~~~~~~~~~----~~~---~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~----a~~ 226 (521)
...+ ++... +.. .....+...+...+++.|..+|+..++.+|-.. .-...|.+..-...+... |..
T Consensus 245 e~~~-k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 245 EALQ-KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--DDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHH-HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--hhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 2222 11100 000 111122334566799999999999999988643 111112111111111000 011
Q ss_pred HH----------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---
Q psy8681 227 VI----------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281 (521)
Q Consensus 227 ~i----------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--- 281 (521)
+. -.|+...|++||++||....+|...|.-+....+...|...|.+|+..+|.+.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 10 12455679999999999999999999999999999999999999999999876
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 282 --FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 --~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
++..+..++-..=|.-.|++|+...|.| ..+|.++++.+.+.++.++|++.|.+++...+ ...+...+|......
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 5677888888899999999999977765 68999999999999999999999999999875 578889999999998
Q ss_pred CCchhhHHHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 359 GDEDSVSLARRVFERANQALKASSEKE-ERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~~~~~~~-~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
++ ..+|-..|++-++..-..+... +-.........++.+.++.+.+..-
T Consensus 480 ~d---~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 480 KD---LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hh---HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 88 9999999999998652221111 1122222256677788887766553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-09 Score=116.36 Aligned_cols=322 Identities=9% Similarity=-0.058 Sum_probs=214.6
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCC-Ch
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDS-DT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P-~~ 110 (521)
+++...|.. ..... .+....|+.+.|+.+++ .|.+ ....|+++.|+.+ ++++ ...| ++
T Consensus 59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL--~~dP~n~ 136 (822)
T PRK14574 59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL--KKDPTNP 136 (822)
T ss_pred HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCH
Confidence 344455554 23223 45567799999999998 4433 4567999999999 9999 9999 78
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.++..++..+...++.++|...+++++...|. . ..+...+.+....+ ....|..
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---~-~~~l~layL~~~~~----------------------~~~~AL~ 190 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPT---V-QNYMTLSYLNRATD----------------------RNYDALQ 190 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---h-HHHHHHHHHHHhcc----------------------hHHHHHH
Confidence 99999999999999999999999999988663 1 12233333333333 4545888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH----------------------------------------Hh
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI----------------------------------------VS 230 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i----------------------------------------~~ 230 (521)
.|+++++..|.+. .++..|.......|-..-+.... ..
T Consensus 191 ~~ekll~~~P~n~--e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLAPTSE--EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 8888888888766 55565555555555432222211 00
Q ss_pred hHHHHHHHHHh---hCCC---------------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 231 KRKFQYEEEVN---SNPN---------------------------------------NYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 231 krr~~ye~al~---~~P~---------------------------------------~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
+....|+..+. ..|. -.-+--.++..+...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 01122333332 1121 11123334555666778899999
Q ss_pred HHHHHHHcCCc------hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC---------CCc----HHHHHHHHHHHHh
Q psy8681 269 TYERAIANIPP------TK-----FAELESLLGDMERARAIYELAISQPRL---------DMP----ELVWKAYIDFEVG 324 (521)
Q Consensus 269 ~~erAl~~~P~------~~-----~a~le~~~g~~e~Ar~ife~al~~~~~---------~~~----~~lw~~yi~~e~~ 324 (521)
+|..++...|+ .. +..-+...|.++.|..+.+.....+|. ..+ .......+....-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999886532 11 122234579999999999999984441 011 2233333555677
Q ss_pred cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCC
Q psy8681 325 QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 325 ~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~ 403 (521)
.|++..|..+++.++...| ++.+++.+|..+...|. +.+|..+++.++...|.+.. -+........ .-|+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~~--~~~~~~~~al----~l~e 499 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL---PRKAEQELKAVESLAPRSLI--LERAQAETAM----ALQE 499 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccHH--HHHHHHHHHH----hhhh
Confidence 8999999999999999998 79999999999999999 99999999999988887632 2223333333 2376
Q ss_pred HHHHHHHH
Q psy8681 404 DESRAKLN 411 (521)
Q Consensus 404 ~~~~~~v~ 411 (521)
..+++.+.
T Consensus 500 ~~~A~~~~ 507 (822)
T PRK14574 500 WHQMELLT 507 (822)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-10 Score=116.83 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=176.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
.++..|.+..|.-+|+.|+...|.+. ..|..++......++-..++.. +++|++++|+|..+-..++..+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~A--------L~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISA--------LRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHH--------HHHHHhcCCccHHHHHHHHHHH
Confidence 34556789999999999999999988 8999998887777777677655 9999999999999999998888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh------------------------------------------------HHHHHHHc
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK------------------------------------------------FAELESLL 289 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~------------------------------------------------~a~le~~~ 289 (521)
...|.-..|...|..=|...|+.. ++-|+...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 777766666666666555443211 66778888
Q ss_pred CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHH
Q psy8681 290 GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLAR 368 (521)
Q Consensus 290 g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR 368 (521)
|++++|..+|+.|+...|.+ ..+|+.++..+.......+|+..|.|||++.| .+.+|.+++-.++..|. +.+|.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHH
Confidence 99999999999999977754 78999999999999999999999999999998 79999999999999998 99999
Q ss_pred HHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 369 RVFERANQALKAS----SEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 369 ~vferAl~~~~~~----~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
..|-.||...+.+ ........+|..++-+-...|..+.+..
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999987662 1111124688888877777777664433
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-09 Score=112.45 Aligned_cols=260 Identities=18% Similarity=0.214 Sum_probs=208.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+...+.-|+...-.|+++.|..++..+|...| .....|..++...+..| +.+.|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrG----------------------d~eK~l 193 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRG----------------------DIEKAL 193 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcc----------------------cHHHHH
Confidence 55677778888888999999999999999854 46788999999999998 889888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
...-.|--..|.+. .+|..+..+-.+.|+...|.-+ |.++|..+|.+....+..+.++.+.|+...|...
T Consensus 194 ~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~c--------y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 194 NFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYC--------YSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHH--------HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 77777777789888 9999999999999999988766 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh----------HHHHHHHcCCHHHHHHHHHHHHcCC--C------------------------------
Q psy8681 270 YERAIANIPPTK----------FAELESLLGDMERARAIYELAISQP--R------------------------------ 307 (521)
Q Consensus 270 ~erAl~~~P~~~----------~a~le~~~g~~e~Ar~ife~al~~~--~------------------------------ 307 (521)
|.+++..+|+.. ++..+...++-++|.++++.++... .
T Consensus 264 f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 999999999655 3444555555577777766665310 0
Q ss_pred ------------------------------------------------------------------CCCcHHHHHHHHHH
Q psy8681 308 ------------------------------------------------------------------LDMPELVWKAYIDF 321 (521)
Q Consensus 308 ------------------------------------------------------------------~~~~~~lw~~yi~~ 321 (521)
......++....+.
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 00012344444455
Q ss_pred HHhcCChHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q psy8681 322 EVGQGERDKVRELHERLLERTV--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEA 399 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~ 399 (521)
+...|++..|..+|..++...+ +..||...|.++...|. .+.|...|++++...|.+-+ .|..|-.-+.
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e---~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~---- 494 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE---YEEAIEFYEKVLILAPDNLD--ARITLASLYQ---- 494 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCchh--hhhhHHHHHH----
Confidence 6678899999999999988764 57799999999999998 99999999999999998854 4455544444
Q ss_pred HcCCHHHHHHHHhh
Q psy8681 400 QHGDDESRAKLNSK 413 (521)
Q Consensus 400 ~~G~~~~~~~v~~~ 413 (521)
+.|+.+.+-.++..
T Consensus 495 ~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 495 QLGNHEKALETLEQ 508 (895)
T ss_pred hcCCHHHHHHHHhc
Confidence 78998866665544
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-10 Score=105.76 Aligned_cols=227 Identities=16% Similarity=0.143 Sum_probs=150.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 115 RELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 115 ~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.+++.+.+.|-+.+|.+-|..+|+.+| .++.+.-+.+...+.. ...+|..+|..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~rid----------------------QP~~AL~~~~~ 281 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRID----------------------QPERALLVIGE 281 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhc----------------------cHHHHHHHHhh
Confidence 456666666666667777766666654 2344555555555555 66666666666
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
.|+.+|.+. .+....+......++.+.+... |...++.+|.+..+--..+.-+.-.++++-|...|.|.+
T Consensus 282 gld~fP~~V--T~l~g~ARi~eam~~~~~a~~l--------Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 282 GLDSFPFDV--TYLLGQARIHEAMEQQEDALQL--------YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred hhhcCCchh--hhhhhhHHHHHHHHhHHHHHHH--------HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 666666665 4555555555556666666554 666666666666655555555555566666666666666
Q ss_pred HcCCchh--HH---HHHHHcCCHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHH
Q psy8681 275 ANIPPTK--FA---ELESLLGDMERARAIYELAISQPR-LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKV 347 (521)
Q Consensus 275 ~~~P~~~--~a---~le~~~g~~e~Ar~ife~al~~~~-~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~v 347 (521)
+.--.+. |. -...--+.++-+...|++|+.... ......+|..........|++..|...|+-+|...+ |.+.
T Consensus 352 qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 352 QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 6432222 21 112233566666677777666211 122467998888888888999999999999998775 7889
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 348 WMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 348 wi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..+++.+....|+ ++.||+++..|-..+|.
T Consensus 432 lnNLavL~~r~G~---i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 432 LNNLAVLAARSGD---ILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhHHHHHhhcCc---hHHHHHHHHHhhhhCcc
Confidence 9999999998888 99999999999888875
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-08 Score=107.72 Aligned_cols=339 Identities=13% Similarity=0.111 Sum_probs=237.9
Q ss_pred HHHhcCCh--hhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-C-hhhHHHHHHHHHHcCC
Q psy8681 66 MEEKQGNK--IGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-D-TTYGMRELVFEEQNGF 125 (521)
Q Consensus 66 ~e~~~gn~--~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~~e~~~g~ 125 (521)
++...|.. +.|-+.|. .|++ ....|+|-.|..+ .+++ ...| . ++.-+..+....+.|.
T Consensus 137 ~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al--~inp~~~aD~rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 137 FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKAL--RINPACKADVRIGIGHCFWKLGM 214 (1018)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHH--hcCcccCCCccchhhhHHHhccc
Confidence 33444444 67777776 5776 5667899999999 9998 8888 2 6677777777788899
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh--hccccch-------------hhHHHHHhhhhhhhhHHHHHH
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE--KYGDRAG-------------IEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~--~~~~~~~-------------~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.+.|+..|++|+.+.| .+..+.+.++.+...+.. .+....+ +...+|...++-.+++..+..
T Consensus 215 ~~~a~~a~~ralqLdp---~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDP---TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred hhhHHHHHHHHHhcCh---hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 9999999999999955 567777887776665441 1111111 122334444566679999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q psy8681 191 IYKYALDHIPK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 191 iy~~aL~~~P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~-~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
++..++...-. .....-+...+..+...|+++.|... |.+++..+|.+ .-..+.+++.+...|+...+..
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y--------Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY--------YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH--------HHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 99999876311 11224577778888899999999877 99999999988 6678899999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcC----CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 269 TYERAIANIPPTK-----FAELESLLG----DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g----~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
.|++.+...|+.. ++.++...+ ..+.|..+..+++...|.+ ...|.....++ ..++.-.+..+|.+|+
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d--~~a~l~laql~-e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD--SEAWLELAQLL-EQTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc--HHHHHHHHHHH-HhcChHHHHHHHHHHH
Confidence 9999999999876 555655554 6688888899988876543 57888766555 5677777799999998
Q ss_pred hcC-----CC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHH--HHH--HHHHHHHHHHcCCH----H
Q psy8681 340 ERT-----VH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEER--VML--LEAWKEFEAQHGDD----E 405 (521)
Q Consensus 340 ~~~-----~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~--~~l--~~~~~~fE~~~G~~----~ 405 (521)
..- +- +++-.+.|......|+ +..|+..|.+|+..+....++++. ..| ---...+.+..++. +
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~---~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGN---IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcC---hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 541 23 4455568888888898 999999999999884321111111 111 11112222233332 2
Q ss_pred HHHHHHhhCchhhhhhhc
Q psy8681 406 SRAKLNSKLPRRAKKRVK 423 (521)
Q Consensus 406 ~~~~v~~~~p~~v~krr~ 423 (521)
..+.|.+..|..|..++.
T Consensus 518 ~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 518 MYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHHCchhHHHHHH
Confidence 346677778877755543
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=99.84 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=199.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHH-------
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS------- 176 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~------- 176 (521)
...| ++.+...+++++...|+.+.|...|+++....|.. ...-.-|+-+....| .+.+...+-...++
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---VEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---hhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchh
Confidence 4567 68888888888888888888888888888774422 222223333333322 11111111111110
Q ss_pred ------hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 177 ------KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 177 ------~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
...+..+++.+|..+-+++++..|.+. ..+..-+.+....|..+.|.-. |..|...-|...+.+
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~Ia--------FR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIA--------FRTAQMLAPYRLEIY 371 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHH--------HHHHHhcchhhHHHH
Confidence 012334689999999999999999987 5666667777788887776644 999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHH-----HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 251 FDYLRLLEDEGNADLIRETYERAIANIPPTK--FAEL-----ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 251 ~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~l-----e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
..++..+...|.+.+|.-.-..++..+|.+. +.-+ ...----+.|...+++++...|.- ...-.....+..
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHH
Confidence 9999999999999999999888888888765 1111 011123578999999999976542 223344566777
Q ss_pred hcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcC
Q psy8681 324 GQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G 402 (521)
..|.+..+..++++.|..+++..+...++++....+. +..|.+.|..|+...|++. .-++....+|++-.
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~~~------~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPKSK------RTLRGLRLLEKSDD 519 (564)
T ss_pred hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCccch------HHHHHHHHHHhccC
Confidence 8899999999999999999999999999999999988 9999999999999999873 35566666666543
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-09 Score=104.74 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=96.6
Q ss_pred CCCCChhhHHHHHHHHHHcC-----------------C---hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 105 DRDSDTTYGMRELVFEEQNG-----------------F---VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 105 ~~~P~~~~W~~~a~~e~~~g-----------------~---~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
..+++..-++.|+++|.... + ..+...+|.+|+..++ .+..+|..|+.|..+.+
T Consensus 46 rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~---~D~~lW~~yi~f~kk~~--- 119 (568)
T KOG2396|consen 46 RRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFN---GDVKLWLSYIAFCKKKK--- 119 (568)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhc---
Confidence 55566777888888887542 1 2356778999998875 37899999999998887
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC-hhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD-RAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~-~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+.+...||..+|...|.+. .+|...+.++-..+. .+++.++ |.++|..|
T Consensus 120 -------------------~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRal--------flrgLR~n 170 (568)
T KOG2396|consen 120 -------------------TYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARAL--------FLRGLRFN 170 (568)
T ss_pred -------------------chhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHH--------HHHHhhcC
Confidence 68889999999999999988 899988888776664 5666555 99999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8681 244 PNNYDAWFDYLRLLE 258 (521)
Q Consensus 244 P~~~~~W~~y~~~~~ 258 (521)
|.++.+|..|.+++.
T Consensus 171 pdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMEL 185 (568)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999998875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-08 Score=92.35 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH--HHHHHHHHHHhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK--LFIAFAKFEEGQR 161 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~--lw~~~a~~e~~~~ 161 (521)
.+=.++.+.|..+ -.++ ...| +.++-+.+|+++.+.|.+|+|+.+.+..+.. |+-..... +...+++=....
T Consensus 45 fLLs~Q~dKAvdlF~e~l--~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a- 120 (389)
T COG2956 45 FLLSNQPDKAVDLFLEML--QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA- 120 (389)
T ss_pred HHhhcCcchHHHHHHHHH--hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh-
Confidence 3334678899999 8888 8889 7899999999999999999999999888775 32111111 222233322333
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
|-+++|..+|....+. |.. .......++.++....+.+.|.++ -++.++
T Consensus 121 ---------------------Gl~DRAE~~f~~L~de-~ef-a~~AlqqLl~IYQ~treW~KAId~--------A~~L~k 169 (389)
T COG2956 121 ---------------------GLLDRAEDIFNQLVDE-GEF-AEGALQQLLNIYQATREWEKAIDV--------AERLVK 169 (389)
T ss_pred ---------------------hhhhHHHHHHHHHhcc-hhh-hHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHH
Confidence 3889999999887763 222 124445555555555566666655 556666
Q ss_pred hCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 242 SNPNNY-----DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 242 ~~P~~~-----~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
..|..+ ..+..++..+....+++.|+.++.+|++.+|.+. .+.++...|+++.|...++.+++++|-- -
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l 248 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-L 248 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-H
Confidence 666543 3566666667777899999999999999999877 7889999999999999999999976531 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
+.+.......+...|........+.++.+.++.+.+-+.++.+...... ++.|...+.+-+..-|. ...+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G---~~~Aq~~l~~Ql~r~Pt-------~~gf 318 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG---IDAAQAYLTRQLRRKPT-------MRGF 318 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC---hHHHHHHHHHHHhhCCc-------HHHH
Confidence 3455555566678999999999999999999888877777777766655 89999999999988886 3456
Q ss_pred HHHHHHHHHcCCH
Q psy8681 392 EAWKEFEAQHGDD 404 (521)
Q Consensus 392 ~~~~~fE~~~G~~ 404 (521)
-.++++.-.-++.
T Consensus 319 ~rl~~~~l~daee 331 (389)
T COG2956 319 HRLMDYHLADAEE 331 (389)
T ss_pred HHHHHhhhccccc
Confidence 6666665544443
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=109.63 Aligned_cols=230 Identities=14% Similarity=0.135 Sum_probs=168.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.++.|.+.+|.-. +.+| ...| +.+.|..+|......++-..|+..+.+|+++.| .+-.+..+++--....+ .
T Consensus 295 lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---~NleaLmaLAVSytNeg-~ 368 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP---TNLEALMALAVSYTNEG-L 368 (579)
T ss_pred HHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC---ccHHHHHHHHHHHhhhh-h
Confidence 8899999999999 9999 9999 799999999999999999999999999999965 45556666554443333 0
Q ss_pred ccccchhhHHHHHhh--------------------hhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh
Q psy8681 164 YGDRAGIEDVIVSKR--------------------KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~--------------------~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
-..++...+.|+... ......+.....+|-.|....|......+...++-+....|+++.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 011112222222100 011124556667777777777854444899999988888999999
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHH
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAI 298 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~i 298 (521)
+.++ |+.||...|+|+.+|..||..+....+..+|+..|.||+++-|... ++--...+|.+.+|...
T Consensus 449 aiDc--------f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDC--------FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHH--------HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9988 9999999999999999999999998899999999999999999744 34445667888888888
Q ss_pred HHHHHcCCCC-----CC---cHHHHHHHHHHHHhcCChH
Q psy8681 299 YELAISQPRL-----DM---PELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 299 fe~al~~~~~-----~~---~~~lw~~yi~~e~~~g~~~ 329 (521)
|-.||...+. .. ...+|..+-.++.-.+..+
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8887763211 10 2457766655555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-09 Score=104.17 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=196.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| +...|..++..+...|..+..|++|++....+| .-+.+|..|..-+...+
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp---~~~~aw~ly~s~ELA~~---------------------- 90 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP---IMEHAWRLYMSGELARK---------------------- 90 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc---cccHHHHHHhcchhhhh----------------------
Confidence 6789 799999999999999999999999999998776 35789999998888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh---hCCCCHHHHHHHHHHHHH-
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN---SNPNNYDAWFDYLRLLED- 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~---~~P~~~~~W~~y~~~~~~- 259 (521)
++.....+|-++|...- ...+|..|+.+-++.++.-.-+.- .+....|+-.+. ..|.+...|..|+.++..
T Consensus 91 df~svE~lf~rCL~k~l---~ldLW~lYl~YIRr~n~~~tGq~r--~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~ 165 (660)
T COG5107 91 DFRSVESLFGRCLKKSL---NLDLWMLYLEYIRRVNNLITGQKR--FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYI 165 (660)
T ss_pred hHHHHHHHHHHHHhhhc---cHhHHHHHHHHHHhhCcccccchh--hhhHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 89999999999987632 348999999988766532211100 001123554444 589999999999999864
Q ss_pred --------cCCHHHHHHHHHHHHHcCCchh-------HHHHHHHc-------------CCHHHHHHHHHHHHcC------
Q psy8681 260 --------EGNADLIRETYERAIANIPPTK-------FAELESLL-------------GDMERARAIYELAISQ------ 305 (521)
Q Consensus 260 --------~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~-------------g~~e~Ar~ife~al~~------ 305 (521)
+.+++.+|..|.||+.. |-.. |-.+|... -.+-.||+.|+.....
T Consensus 166 ~~~~kwEeQqrid~iR~~Y~ral~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 166 EELGKWEEQQRIDKIRNGYMRALQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred cccccHHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 33688999999999974 4322 55554432 2456778888776541
Q ss_pred -CCC---------CCcHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 306 -PRL---------DMPELVWKAYIDFEVGQGE-------RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 306 -~~~---------~~~~~lw~~yi~~e~~~g~-------~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
.|. .....-|..||.+|...|- ....--+|+.++.-.+ ++.+|+.|..+....++ -++|
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd---~q~a 321 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD---KQKA 321 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH---HHHH
Confidence 100 0123459999999987542 2344456788888776 78999999999999988 8999
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhh
Q psy8681 368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKK 420 (521)
Q Consensus 368 R~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~k 420 (521)
..+.++|+..+|. |.-.+..++....+.+.+..+..++-..+++
T Consensus 322 l~tv~rg~~~sps---------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 322 LKTVERGIEMSPS---------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHhcccCCCc---------hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 9999999998885 4444455555666666666666666555543
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-09 Score=110.73 Aligned_cols=298 Identities=17% Similarity=0.189 Sum_probs=197.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc---CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN---GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~---g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+++..+.. ..+. ...| ++.+|+.|+.-+... ++...+...|++|+... .+..+|..+++|....
T Consensus 123 lrk~~dl~kl~~ar~~~~--~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy----~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 123 LRKLGDLEKLRQARLEMS--EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY----NSVPIWEEVVNYLVGF 196 (881)
T ss_pred HHHhcchHHHHHHHHHHH--HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc----ccchHHHHHHHHHHhc
Confidence 4457888888888 8888 8899 889999999887753 57778888999998753 4678999999988766
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHcCChhhHHHHH----------
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD--RTAEIYKAYTIHEKKYGDRAGIEDVI---------- 228 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~--~~~~l~~~~~~~e~~~G~~~~a~~~i---------- 228 (521)
+.. ....++++..|.+|.+||...... ....+|..|..|+..+-.-.....++
T Consensus 197 ~~~---------------~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 197 GNV---------------AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred ccc---------------ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 511 111136777788888887764332 23467777777766442111111110
Q ss_pred --------------------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 229 --------------------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 229 --------------------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+.+.+..|++.+...|.-...|..|+.++..+|.+.....+++|++..
T Consensus 262 ~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 262 LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 122345678888888989999999999999999999999999999998
Q ss_pred CCchh-----HHH-HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC------------------------
Q psy8681 277 IPPTK-----FAE-LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG------------------------ 326 (521)
Q Consensus 277 ~P~~~-----~a~-le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g------------------------ 326 (521)
.+.+. |+. +-..++-.+++..++.+++..||.. ..+|..|.-.+.+.+
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t--gdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~ 419 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT--GDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDY 419 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCCchH--HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 77654 221 2234566677778888888877653 456766653322222
Q ss_pred --------------ChHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 327 --------------ERDKVRELHERLLERT---------VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 327 --------------~~~~Ar~l~eral~~~---------~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.++.-++.|..|.... +...+.-.+|.++.+... +.+.||.|...-+..-.
T Consensus 420 ~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imty~~---- 493 (881)
T KOG0128|consen 420 LAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMTYGG---- 493 (881)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhccccCCc----
Confidence 2333344444443321 123444556666665432 37777777665544322
Q ss_pred hHHHHH-HHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVM-LLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~-l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+.. .|..++.+|..||+...++.+..++
T Consensus 494 --~~iag~Wle~~~lE~~~g~~~~~R~~~R~a 523 (881)
T KOG0128|consen 494 --GSIAGKWLEAINLEREYGDGPSARKVLRKA 523 (881)
T ss_pred --chHHHHHHHHHhHHHHhCCchhHHHHHHHH
Confidence 2234 8999999999999999999976555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-07 Score=89.54 Aligned_cols=252 Identities=14% Similarity=0.065 Sum_probs=189.6
Q ss_pred cCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC------hhhHHHHHHHHHHcCChh
Q psy8681 70 QGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD------TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 70 ~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~------~~~W~~~a~~e~~~g~~~ 127 (521)
..+.+.|..+|- +|.. ..+.|+.|+|+.+ +-.+ ..|+ .-.-..+++-++..|=+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 345666666665 4554 4567889999999 6665 3343 456788999999999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
+|..+|...++. | .........+...+.... +++.|+.+-++.....|......+
T Consensus 125 RAE~~f~~L~de-~--efa~~AlqqLl~IYQ~tr----------------------eW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 125 RAEDIFNQLVDE-G--EFAEGALQQLLNIYQATR----------------------EWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHHhcc-h--hhhHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHHcCCccchhHH
Confidence 999999998874 1 123455566666776666 899999999888888776654444
Q ss_pred HHHHHH---HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---
Q psy8681 208 YKAYTI---HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281 (521)
Q Consensus 208 ~~~~~~---~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--- 281 (521)
-.-|.. -.....+.+.+. ..+.+|+..+|++..+=..+++++...|++..|.+.++++++.+|...
T Consensus 180 AqfyCELAq~~~~~~~~d~A~--------~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 AQFYCELAQQALASSDVDRAR--------ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHH--------HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 444433 333334444444 449999999999999999999999999999999999999999999754
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q psy8681 282 ---FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 ---~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~ 358 (521)
+...+..+|..+..+..+.++++..+.. .+-....++.......+.|.....+-|...|+...+..+..+...-
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGA---DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCc---cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 5566788999999999999999865432 2334444555566778899999999999999999998888887765
Q ss_pred CC
Q psy8681 359 GD 360 (521)
Q Consensus 359 g~ 360 (521)
+.
T Consensus 329 ae 330 (389)
T COG2956 329 AE 330 (389)
T ss_pred cc
Confidence 54
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=96.24 Aligned_cols=281 Identities=15% Similarity=0.041 Sum_probs=162.6
Q ss_pred HHHHH-HHHHhcCChhhhhhhcC-----CC---cH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHH
Q psy8681 60 KAWKK-AMEEKQGNKIGEEGANK-----EN---EE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELV 118 (521)
Q Consensus 60 ~~W~~-~~e~~~gn~~~Ar~ife-----~P---~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~ 118 (521)
..|.. .++...|+.+.+...+. .| +. ....|+++.|..+ ++++ ..+| +...|.. +.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL--DDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHH-hH
Confidence 44555 66666777777655554 12 11 4455677777777 7777 6677 4444442 22
Q ss_pred HHHHcCChhHHHHHHHHHHHh-cCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 119 FEEQNGFVSGARKVYERAVEF-FGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 119 ~e~~~g~~~~Ar~vye~Al~~-~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
.....|....+...+.+++.. .+.++.....+..++.....+| .+++|...|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G----------------------~~~~A~~~~~~al~ 142 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG----------------------QYDRAEEAARRALE 142 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHh
Confidence 222222222222222222221 1222223333334444555555 88899999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY----DAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~----~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
..|.+. .++..++......|+.+.+... |++++...|.++ ..|+.++.++...|+.++|..+|+++
T Consensus 143 ~~p~~~--~~~~~la~i~~~~g~~~eA~~~--------l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 LNPDDA--WAVHAVAHVLEMQGRFKEGIAF--------MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred hCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888875 6777778888888888888766 888888776432 46778888888999999999999998
Q ss_pred HHcCCchh-HH------H-H--HHHcCCHHHHHH---HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 274 IANIPPTK-FA------E-L--ESLLGDMERARA---IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 274 l~~~P~~~-~a------~-l--e~~~g~~e~Ar~---ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
+...|... .. . + ....|....+.. +........+...........+......|+.+.|..+++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 76555211 11 0 1 112232222222 2222211111111122223455556678888989998887765
Q ss_pred cC-C---------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 341 RT-V---------HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 341 ~~-~---------~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
.. . .+.+.+..+......|+ .+.|...+.+|+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~---~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGN---YATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 32 1 13344445556666777 888888888888654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-07 Score=92.87 Aligned_cols=205 Identities=15% Similarity=0.073 Sum_probs=151.4
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| .+..|..++.++...|+.+.+...|.++....+............+......+ ++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g----------------------~~ 59 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG----------------------DL 59 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC----------------------CH
Confidence 57 57788899999999999999999999999887654433444444444444555 89
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-HHHHH--HHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYK-AYTIH--EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~-~~~~~--e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++|..++++++...|.+. ..+. .+..+ -...|....+... +......+|.....+..++..+...|+
T Consensus 60 ~~A~~~~~~~l~~~P~~~--~a~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 60 PKALALLEQLLDDYPRDL--LALKLHLGAFGLGDFSGMRDHVARV--------LPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHHHHHHHHHHCCCcH--HHHHHhHHHHHhcccccCchhHHHH--------HhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999876 3333 21211 1122333333322 333334566777777788889999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLD--MPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
+++|...|++++...|.+. ++.+....|+++.|...|++++...+.+ .....|..++.++...|+++.|..+|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999876 5777888999999999999999854321 12345667788899999999999999
Q ss_pred HHHHhcCC
Q psy8681 336 ERLLERTV 343 (521)
Q Consensus 336 eral~~~~ 343 (521)
++++...+
T Consensus 210 ~~~~~~~~ 217 (355)
T cd05804 210 DTHIAPSA 217 (355)
T ss_pred HHHhcccc
Confidence 99986655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-07 Score=92.54 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=185.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.-..|+-++|-.. ..++ ...+ |...|..+|-+.....++++|.++|..|+..-+ ++..||..++-+..+.+ .
T Consensus 51 L~~lg~~~ea~~~vr~gl--r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~---dN~qilrDlslLQ~QmR-d 124 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGL--RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK---DNLQILRDLSLLQIQMR-D 124 (700)
T ss_pred hhcccchHHHHHHHHHHh--ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHH-h
Confidence 4457899999999 9999 8888 899999999999999999999999999999844 57899999888777666 3
Q ss_pred ccccchhhHHHHH-----------hh--hhhhhhHHHHHHHHHHHHhcC---ChhhH-----HHHHHHHHHHHHHcCChh
Q psy8681 164 YGDRAGIEDVIVS-----------KR--KFQYEEHERARVIYKYALDHI---PKDRT-----AEIYKAYTIHEKKYGDRA 222 (521)
Q Consensus 164 ~~~~~~~~~~~l~-----------~~--~~~~~~~e~Ar~iy~~aL~~~---P~~~~-----~~l~~~~~~~e~~~G~~~ 222 (521)
|..-...+..++. -+ ..-.|++..|..+.+.-.... |.... .-++... .....|..+
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~--i~~E~g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ--ILIEAGSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH--HHHHcccHH
Confidence 3332222222221 11 223467888887776655543 33210 0112211 122233333
Q ss_pred hHHHHH--------------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q psy8681 223 GIEDVI--------------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIA 275 (521)
Q Consensus 223 ~a~~~i--------------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~ 275 (521)
.+.+.. +......|...+..+|++.+.+..|...+.. .+.......+|...-+
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 222211 1223456888889999999998888888863 3333344477777655
Q ss_pred cCCchh----------------------------------HHHHHHHcCCHHHHHHHHHHHHc-------CC---C----
Q psy8681 276 NIPPTK----------------------------------FAELESLLGDMERARAIYELAIS-------QP---R---- 307 (521)
Q Consensus 276 ~~P~~~----------------------------------~a~le~~~g~~e~Ar~ife~al~-------~~---~---- 307 (521)
..|.+. +..+..-..+...+- +.++.+. .. +
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccc
Confidence 544432 333443344433322 3343331 11 0
Q ss_pred ---CCCcHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 308 ---LDMPELVWKAYID--FEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 308 ---~~~~~~lw~~yi~--~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
-.+...+|..|-- -.-..|+++.|....+.++..+|. ++.++.=|.+..+.|. ++.|-.+++.|.+..
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQELD 435 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcc
Confidence 0124678988743 344679999999999999999985 8899999999999998 999999999987654
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-07 Score=96.31 Aligned_cols=232 Identities=14% Similarity=0.075 Sum_probs=186.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++++-...++-+...+++..+.++++..++..|-+...-.+.++ .+.+ ....
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia--~l~e--------------------------l~~~ 294 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA--CLYE--------------------------LGKS 294 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH--HHHH--------------------------hccc
Confidence 57788888888888999999999999999997744333333332 2221 1222
Q ss_pred HHHH---HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8681 189 RVIY---KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 189 r~iy---~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~ 265 (521)
..+| .+.++..|... .-|.+.+.+.-..|....|... |-++...+|....+|+.||..+.-.|..++
T Consensus 295 n~Lf~lsh~LV~~yP~~a--~sW~aVg~YYl~i~k~seARry--------~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 295 NKLFLLSHKLVDLYPSKA--LSWFAVGCYYLMIGKYSEARRY--------FSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred chHHHHHHHHHHhCCCCC--cchhhHHHHHHHhcCcHHHHHH--------HHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 3344 45566788876 7899999888888988888766 999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchh----HHHHHHH-cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 266 IRETYERAIANIPPTK----FAELESL-LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~----~a~le~~-~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
|...|..|-+.+|.+. |..++.. ++++..|...|..|+...|.+ +.+.+..+-+....+.+.+|..+|+.++.
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD--PLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--chhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 9999999999999876 7777665 899999999999999988765 34555555455567899999999999995
Q ss_pred cC----C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 341 RT----V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 341 ~~----~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.- + -.++|.+++....+++. ++.|...|++|+...|.+..
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchh
Confidence 42 1 24568889999999988 99999999999999998754
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-07 Score=90.94 Aligned_cols=272 Identities=12% Similarity=0.035 Sum_probs=200.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
++..|.-..|..- .+.+ ...|+ ...-+.-+.++++.|.++.|..-|...|...|++.........++...+...
T Consensus 82 yLAmGksk~al~Dl~rVl--elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~-- 157 (504)
T KOG0624|consen 82 YLAMGKSKAALQDLSRVL--ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV-- 157 (504)
T ss_pred HhhhcCCccchhhHHHHH--hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH--
Confidence 4455555666666 7888 88885 6778888999999999999999999999886654333344444443332221
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+-.-..++..|+...|+......|+..|=+. .++..-+......|....|..- ...+-.+.
T Consensus 158 --------l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda--~l~~~Rakc~i~~~e~k~AI~D--------lk~askLs 219 (504)
T KOG0624|consen 158 --------LVQQLKSASGSGDCQNAIEMITHLLEIQPWDA--SLRQARAKCYIAEGEPKKAIHD--------LKQASKLS 219 (504)
T ss_pred --------HHHHHHHHhcCCchhhHHHHHHHHHhcCcchh--HHHHHHHHHHHhcCcHHHHHHH--------HHHHHhcc
Confidence 00111224556789999999999999988766 7777777777778887777654 77777778
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH----------HH--HHcCCHHHHHHHHHHHHcCC
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAE----------LE--SLLGDMERARAIYELAISQP 306 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~----------le--~~~g~~e~Ar~ife~al~~~ 306 (521)
..+.+..+....++...|+...+......+++.+|++. |-. ++ ...+++..+.+..+..+...
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999876 211 11 24578888888999988865
Q ss_pred CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 307 RLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 307 ~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|...+ .......-.-...-|++.+|+....++|...|+ +.+.+.-+..+..... ++.|..-|+.|.+..+++.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNESNT 375 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcccH
Confidence 53211 112222222344678999999999999999985 8999988887765444 9999999999999988764
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-08 Score=102.23 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=108.0
Q ss_pred HHhcccchhhHHH-HhhhccCC--------CCChhhHH-HHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDR--------DSDTTYGM-RELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLF 150 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~--------~P~~~~W~-~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw 150 (521)
+..+|+++.|..+ .+++ .. ||.+..-. .++.++...+++.+|..+|++|+.. +|. ++....++
T Consensus 209 y~~~g~~e~A~~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHhccHHHHHHHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6677888888888 8888 44 88655444 5999999999999999999999986 333 33346677
Q ss_pred HHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-------ChhhHHHHHHHHHHHHHHcCChhh
Q psy8681 151 IAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-------PKDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 151 ~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-------P~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
.+++.+.-..| ++++|...|++|+++. +.. ........+......+..+.
T Consensus 287 ~nLa~ly~~~G----------------------Kf~EA~~~~e~Al~I~~~~~~~~~~~-v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 287 NNLAVLYYKQG----------------------KFAEAEEYCERALEIYEKLLGASHPE-VAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHhccC----------------------ChHHHHHHHHHHHHHHHHhhccChHH-HHHHHHHHHHHHHHhcchhH
Confidence 77777777676 7778877777777652 211 12334444445555566666
Q ss_pred HHHHHHhhHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 224 IEDVIVSKRKFQYEEEVNS-NPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~-~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+.... .+...+|..+... +|.-..+..+++.++...|++.+|+.+|+.|+..
T Consensus 344 a~~l~-q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 344 AKKLL-QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHH-HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 66541 1122222222222 2234567777777777888888888888887764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-07 Score=88.63 Aligned_cols=191 Identities=13% Similarity=-0.019 Sum_probs=112.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..+...+..+...|+++.|...|++++...|.++.....|...+......+ +++.|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----------------------~~~~A 89 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----------------------DYAEA 89 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----------------------CHHHH
Confidence 57889999999999999999999999999998754444567888888888887 99999
Q ss_pred HHHHHHHHhcCChhhHH-HHHHHHHHHHHHc--------CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTA-EIYKAYTIHEKKY--------GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~-~l~~~~~~~e~~~--------G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
...|+.++...|.+... ..+...+...... |+...+... |++++..+|.+...|..+..+...
T Consensus 90 ~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 90 IAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA--------FQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred HHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH--------HHHHHHHCCCChhHHHHHHHHHHH
Confidence 99999999999976521 1222222222111 333334433 777777777766555443332221
Q ss_pred cCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+.. .... ...+.++...|++..|...|+.++...|.. ....+|...+..+...|++++|..+++.+
T Consensus 162 ~~~~-------~~~~-----~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 162 RNRL-------AGKE-----LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHH-------HHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1000 0000 002334445555555555555555533221 12344555555555555555555555554
Q ss_pred Hhc
Q psy8681 339 LER 341 (521)
Q Consensus 339 l~~ 341 (521)
...
T Consensus 230 ~~~ 232 (235)
T TIGR03302 230 GAN 232 (235)
T ss_pred Hhh
Confidence 443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=91.17 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=181.7
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
|..-+++.++..|-+.+|..-++.+|+..|.- ..|..+.....+......+..+ |-+.+...|.+....
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---dTfllLskvY~ridQP~~AL~~--------~~~gld~fP~~VT~l 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---DTFLLLSKVYQRIDQPERALLV--------IGEGLDSFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---hHHHHHHHHHHHhccHHHHHHH--------HhhhhhcCCchhhhh
Confidence 44556777777788999999999999998865 3566666666677777788766 999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 251 FDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 251 ~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
...++.++..++.+.|.++|.++++..|.+. .+.-+.--|+.+-|...|.+.++.... ++.+++..+--..-.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~ya 371 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhh
Confidence 9999999999999999999999999988765 122233458899999999999986533 346777766555567
Q ss_pred CChHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 326 GERDKVRELHERLLERT--V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~--~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
+.++-+...|+|++... | ..+||.+++......|+ +.-|...|+-|+...++++ .-+..+.-++.+-
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~h~------ealnNLavL~~r~ 442 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQHG------EALNNLAVLAARS 442 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcchH------HHHHhHHHHHhhc
Confidence 89999999999999864 3 47899999999888888 9999999999999888764 4566677788899
Q ss_pred CCHHHHHHHHhhC
Q psy8681 402 GDDESRAKLNSKL 414 (521)
Q Consensus 402 G~~~~~~~v~~~~ 414 (521)
|+...++.+.+..
T Consensus 443 G~i~~Arsll~~A 455 (478)
T KOG1129|consen 443 GDILGARSLLNAA 455 (478)
T ss_pred CchHHHHHHHHHh
Confidence 9999999887655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-07 Score=90.23 Aligned_cols=182 Identities=12% Similarity=0.008 Sum_probs=137.9
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.+..++|..+ .++| ..+| +..+|...+.+....| .++++...+++++...| .+..+|..-+-+....+
T Consensus 50 ~e~serAL~lt~~aI--~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---knyqaW~~R~~~l~~l~---- 120 (320)
T PLN02789 50 DERSPRALDLTADVI--RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---KNYQIWHHRRWLAEKLG---- 120 (320)
T ss_pred CCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---cchHHhHHHHHHHHHcC----
Confidence 4567788888 8999 9999 7899999999999888 67999999999999865 46678887665555444
Q ss_pred ccchhhHHHHHhhhhhhhh--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 166 DRAGIEDVIVSKRKFQYEE--HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~--~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
. .+.+..++.++|+.+|.+. .+|..-.-+....|..+.+... |.++|..+
T Consensus 121 ------------------~~~~~~el~~~~kal~~dpkNy--~AW~~R~w~l~~l~~~~eeL~~--------~~~~I~~d 172 (320)
T PLN02789 121 ------------------PDAANKELEFTRKILSLDAKNY--HAWSHRQWVLRTLGGWEDELEY--------CHQLLEED 172 (320)
T ss_pred ------------------chhhHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHC
Confidence 3 3677889999999999987 7888777777788888877766 99999999
Q ss_pred CCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHcCCchh-----HHHHHHH----cCCHHHHHHHHHHHHcCCC
Q psy8681 244 PNNYDAWFDYLRLLEDE---GNA----DLIRETYERAIANIPPTK-----FAELESL----LGDMERARAIYELAISQPR 307 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~---g~~----~~Ar~~~erAl~~~P~~~-----~a~le~~----~g~~e~Ar~ife~al~~~~ 307 (521)
|.|..+|...+.++... |.. +.......++|...|.+. +..+... ++....|...+..++...+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 99999999988777654 222 356666678888888765 1222222 3445567777777766433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=90.75 Aligned_cols=176 Identities=11% Similarity=-0.003 Sum_probs=108.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-Ch---hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DT---TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~---~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+++.|... ++++ ..+| ++ ..|...+..+...|+++.|...|++++...|+++.....|...+......
T Consensus 43 ~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 4456778888888 8999 9998 43 68899999999999999999999999999886544334454444433322
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
. .......+.++.|...|+.++...|.+. ..+..+..+....+.
T Consensus 121 ~--------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~~~~~~~-------------------- 164 (235)
T TIGR03302 121 I--------------DRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRMDYLRNR-------------------- 164 (235)
T ss_pred c--------------ccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHH--------------------
Confidence 0 0000111378999999999999999875 333333221110000
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~ 304 (521)
........+.++...|+...|...|++++...|.+. .+..+..+|+++.|..+++....
T Consensus 165 -----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -----LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 001123444555556666666666666666555432 34445556666666665555444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-07 Score=91.28 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=188.5
Q ss_pred CCCchhhhhhH---HHHHH-HHHHhcCChhhhhhhcC-------CCcH----------HHhcccchhhHHH-HhhhccCC
Q psy8681 49 AKPNLKLLEKA---KAWKK-AMEEKQGNKIGEEGANK-------ENEE----------EERDKERDREEED-ERKDEGDR 106 (521)
Q Consensus 49 ~~rai~~lP~~---~~W~~-~~e~~~gn~~~Ar~ife-------~P~~----------e~r~g~~e~Ar~~-eral~~~~ 106 (521)
-+.++++-|.. ..|.+ ...-..|+...|.+.|- -|++ +...|++++|... ++.. ..
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~--~~ 261 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL--CA 261 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh--hC
Confidence 44556666655 44445 22223344444444432 3554 7788999999999 9988 88
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch------------hhHH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG------------IEDV 173 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~------------~~~~ 173 (521)
.| .+..--.|+-+..+.|+++..-.+-...+.... ......+.+...+..+. .|.+++. +...
T Consensus 262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K--~~~rAL~~~eK~I~~~~r~~~al 337 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEK--KFERALNFVEKCIDSEPRNHEAL 337 (564)
T ss_pred ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhh--hHHHHHHHHHHHhccCcccchHH
Confidence 99 788888888888888888887777777666521 11122222221111111 1111111 1111
Q ss_pred HH-HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 174 IV-SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 174 ~l-~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
.| +..+.+.+..+.|.-.|+.|...-|... ..|..++.-+-.+|.+..|..+ -..++...|.+..+...
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~~Y~GL~hsYLA~~~~kEA~~~--------An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRL--EIYRGLFHSYLAQKRFKEANAL--------ANWTIRLFQNSARSLTL 407 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhH--HHHHHHHHHHHhhchHHHHHHH--------HHHHHHHhhcchhhhhh
Confidence 11 2234555789999999999999988776 7888888777777877776644 56667777888877776
Q ss_pred HH-HHHH-HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 253 YL-RLLE-DEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 253 y~-~~~~-~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
++ ..+. ..---+.|...+++++...|... .++|...-|.+..+.+++++.+...+ +..+....+++..-.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---DVNLHNHLGDIMRAQ 484 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---ccHHHHHHHHHHHHh
Confidence 65 2222 22235789999999999999754 67888888999999999999988654 236888999999999
Q ss_pred CChHHHHHHHHHHHhcCCCHH
Q psy8681 326 GERDKVRELHERLLERTVHVK 346 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~~~~ 346 (521)
+.+.+|.+.|..+|...|..+
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhHHHHHHHHHHHHhcCccch
Confidence 999999999999999988544
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.5e-07 Score=88.97 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=141.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C-hhhHHHHHH--HHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D-TTYGMRELV--FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~--~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
+++.|+++.|..+ .-+- .... . ...-..++. |.....++..|...-..|+.... -++....+-++.-...
T Consensus 429 ~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr---yn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR---YNAAALTNKGNIAFAN 503 (840)
T ss_pred HHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc---cCHHHhhcCCceeeec
Confidence 5666666666666 4333 2222 1 111222222 22223356667666666665521 1233334334433344
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
| +++.|...|+.||..+.... ......+.-.+..|+.+.+.+. |-+.-
T Consensus 504 g----------------------d~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~--------f~klh 551 (840)
T KOG2003|consen 504 G----------------------DLDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDC--------FLKLH 551 (840)
T ss_pred C----------------------cHHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHH--------HHHHH
Confidence 4 67777777777776543322 2222222233455666666655 44444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
..--++..+...++..++...++.+|+++|-++.+.+|+++ ++.|+-+-|+...|.+.+-....-.|.+....-|
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 44445666667777777777777777777777777777655 5666777777777766665554433332223334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
. ..+++...=.++|+..|+++--..|+..-|.. .+.+....|+ +.+|-.+|......+|.+
T Consensus 632 l--~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 632 L--AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRKFPED 693 (840)
T ss_pred H--HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhCccc
Confidence 3 23444555567777777777666676666643 4445555666 777777777777777765
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=87.40 Aligned_cols=253 Identities=13% Similarity=0.056 Sum_probs=168.0
Q ss_pred HHhcCChhhhhhhcC---CCcH--------------HHhc-ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh
Q psy8681 67 EEKQGNKIGEEGANK---ENEE--------------EERD-KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV 126 (521)
Q Consensus 67 e~~~gn~~~Ar~ife---~P~~--------------e~r~-g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~ 126 (521)
+...|++++|..|+. .-++ .++- .++-.|-.. +.++ .... ++.....-++.-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al--n~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL--NIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh--cccccCHHHhhcCCceeeecCcH
Confidence 346788888776665 1111 3332 256777777 7777 6666 666667777777777888
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
++|...|..||.. +..+....++.+--.+.+| ++++|...|-+.-.+.-.+. .
T Consensus 507 dka~~~ykeal~n---dasc~ealfniglt~e~~~----------------------~ldeald~f~klh~il~nn~--e 559 (840)
T KOG2003|consen 507 DKAAEFYKEALNN---DASCTEALFNIGLTAEALG----------------------NLDEALDCFLKLHAILLNNA--E 559 (840)
T ss_pred HHHHHHHHHHHcC---chHHHHHHHHhcccHHHhc----------------------CHHHHHHHHHHHHHHHHhhH--H
Confidence 8888888888875 2234455555554455555 78888888766544333333 4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
+....+.+.....+...+..+ |-++...-|+++.+...++.++-+.|+..+|...+-..-..+|.+.
T Consensus 560 vl~qianiye~led~aqaie~--------~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIEL--------LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHH--------HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 555566666666666666655 8888888888888888888888888888888887777777777654
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID-FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~-~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g 359 (521)
++..+....-.+.|...|++|.-..|. ..-|..+|. ..++.|+|.+|..+|...-..+| +.+..--++.+....|
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~---~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPN---QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 455556666778888888887654332 346776654 46678888888888888877776 3444333444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-08 Score=84.87 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. ..|..++......|+.+.|... |++++..+|.++.+|+.++..+...|+.
T Consensus 39 ~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~--------y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINF--------YGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 55555555555555555544 4555555555555555555444 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|+..|++|+...|.
T Consensus 109 ~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 109 GLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-06 Score=84.12 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.+|..+-.+....+..++|..++.++|...| .+..+|..-+......+ ..++++..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP---~~ytaW~~R~~iL~~L~---------------------~~l~eeL~ 93 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNP---GNYTVWHFRRLCLEALD---------------------ADLEEELD 93 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc---hhHHHHHHHHHHHHHcc---------------------hhHHHHHH
Confidence 4555555566667889999999999999966 46778887777666554 14789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCCh--hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDR--AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~--~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
.+.+++...|++. .+|.--..+....|.. ..+... ++++|..+|.|+.+|...+-++...|..+++..
T Consensus 94 ~~~~~i~~npkny--qaW~~R~~~l~~l~~~~~~~el~~--------~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 94 FAEDVAEDNPKNY--QIWHHRRWLAEKLGPDAANKELEF--------TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHCCcch--HHhHHHHHHHHHcCchhhHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999987 6787666555566652 333333 889999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh--H---HHHHHHc---CCH----HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHHH
Q psy8681 269 TYERAIANIPPTK--F---AELESLL---GDM----ERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKVR 332 (521)
Q Consensus 269 ~~erAl~~~P~~~--~---a~le~~~---g~~----e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar 332 (521)
.++++|...|.+. | +.+...+ |.. +.+......+|...|.+ ...|.-...++.. .+....|.
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N--~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN--ESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhcCCcccccchhHH
Confidence 9999999988765 1 1111222 322 46777777899876654 4588877777666 34556788
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHH
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFE 355 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e 355 (521)
..+..++...+ ++.+.--++...
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHH
Confidence 88988888665 333333334433
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=102.40 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred chhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch
Q psy8681 92 RDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG 169 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~ 169 (521)
...|... -+++ ...|+ ...|..+|.++...-+..+|+++|.+|.++.+ .+...|-..+.......
T Consensus 474 ~~~al~ali~al--rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---tdaeaaaa~adtyae~~-------- 540 (1238)
T KOG1127|consen 474 SALALHALIRAL--RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA---TDAEAAAASADTYAEES-------- 540 (1238)
T ss_pred HHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhccc--------
Confidence 4445555 5555 55663 56666666666665566666666666666632 23344444444333332
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 170 IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 170 ~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
+.+.|..|.-.+-+..|......-|...+-++-.-++...+ ...|+.++..+|.++..
T Consensus 541 --------------~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a--------V~~fQsALR~dPkD~n~ 598 (1238)
T KOG1127|consen 541 --------------TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA--------VCEFQSALRTDPKDYNL 598 (1238)
T ss_pred --------------cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH--------HHHHHHHhcCCchhHHH
Confidence 33333333222222222221111121111111111222222 23466666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|..++..+...|.+..|.++|.+|....|.+.
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 66666666666666666666666666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=101.58 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=129.6
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| +++....++.+..+.|.+++|..++++++++.| .+..++..++....+.+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---d~~~a~~~~a~~L~~~~---------------------- 134 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---DSSEAFILMLRGVKRQQ---------------------- 134 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhc----------------------
Confidence 5567 699999999999999999999999999999976 47889999999999988
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+++|...++++|...|.+. .....++....+.|..+.|..+ |++++..+|.+..+|..++..+...|+.
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A~~~--------y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQADAC--------FERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHHHHH--------HHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 7788888888899999999987 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++|+....+
T Consensus 205 ~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 205 WRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999997654
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=91.42 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=171.3
Q ss_pred CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhc----CCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFF----GEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~----~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
..+|. ..+-..++..+...|+++.|..+|++|+..+ |.. +.-......++.+...++
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~----------------- 255 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG----------------- 255 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-----------------
Confidence 44563 5566679999999999999999999999973 211 111233344666776666
Q ss_pred hhhhhhHHHHHHHHHHHHhcC-----Chh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHH
Q psy8681 179 KFQYEEHERARVIYKYALDHI-----PKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWF 251 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~-----P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~ 251 (521)
++.+|..+|+.||+.. +.+ .....+..++.+.-+.|.+..+...+ ..+..+|++.+..+ |.-.....
T Consensus 256 -----k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~-e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 256 -----KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC-ERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhccChHHHHHHHH
Confidence 9999999999999862 111 12366777777778889988887651 12222333322222 22344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---c--hh--------HHHHHHHcCCHHHHHHHHHHHHcCC-------CCCCc
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIP---P--TK--------FAELESLLGDMERARAIYELAISQP-------RLDMP 311 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P---~--~~--------~a~le~~~g~~e~Ar~ife~al~~~-------~~~~~ 311 (521)
..+..+...+.+++|..+|++++++.- . +. ++.++..+|.+..|+.+|+.|+... .....
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 677777888999999999999988632 1 11 7888999999999999999999732 11112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-C---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT----V-H---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~----~-~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
..+|.. +..+.+.+.+..|-.+|.++..+. | + ..++.+++..+...|+ ++.|..+.++++..
T Consensus 410 ~~l~~l-a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~---~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 410 KPLNQL-AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN---YEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHH-HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc---HHHHHHHHHHHHHH
Confidence 345544 334468889999999999887652 2 2 3467889999999999 99999988888743
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=86.68 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=95.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
.|++++..+|.+...|..++.++...|+++.|...|++|+...|.+ ..+
T Consensus 61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------------------~~~ 109 (198)
T PRK10370 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------------------------AEL 109 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------------HHH
Confidence 4999999999999999999999999999999999999999888752 356
Q ss_pred HHHHHHHH-HhcCC--hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 315 WKAYIDFE-VGQGE--RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 315 w~~yi~~e-~~~g~--~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|..++..+ ...|+ .+.|+.+|+++++..| ++.++..++......|+ ++.|...|+++++..|...
T Consensus 110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 110 YAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCc
Confidence 77777643 55566 4888888888888886 67888888888888888 8888888888888887753
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-06 Score=83.91 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=193.3
Q ss_pred HHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhH
Q psy8681 66 MEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~ 128 (521)
.--+.|+++.|..+|. .|.+ +..+|.|+.|..- .+.+ ...|+ +..|...|......|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccHHH
Confidence 3347899999999998 5655 8889999999999 9999 99995 8999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhh-----------------------hh-----------------------
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ-----------------------RE----------------------- 162 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~-----------------------~~----------------------- 162 (521)
|+..|..+|+..|+ +..+...+++.+... ..
T Consensus 89 A~~ay~~GL~~d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcCCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999998653 334444433322111 00
Q ss_pred -hccccchh---------------------------------------------------hHHHHHhhhhhhhhHHHHHH
Q psy8681 163 -KYGDRAGI---------------------------------------------------EDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 163 -~~~~~~~~---------------------------------------------------~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..++.++. ...-++...+....++.|..
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00000000 00001111233456777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-------hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-------AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-------~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.|..++.+. ... ..+......+-..|.. ..+.+. ...-|..|.- | .......+..+...++.
T Consensus 246 ~y~~a~el~-~~i--t~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~kl-I------ak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 246 HYAKALELA-TDI--TYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKL-I------AKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHhHh-hhh--HHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHH-H------HHHHHHhhhhhhhHHhH
Confidence 888888776 433 2333332222222322 221111 0001111111 0 01111233344455677
Q ss_pred HHHHHHHHHHHHcCCc--hh-----------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 264 DLIRETYERAIANIPP--TK-----------------------------FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~--~~-----------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
+.++..|++++...-. .. -+.-....|++..|...|..||...|.+ .
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D--a 392 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED--A 392 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch--h
Confidence 8888888888764322 11 1222346799999999999999987754 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.++..-.-.+...|++..|..-.+.++++.| ..+.|+.=+..+....+ ++.|...|+.|++..|++
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCchh
Confidence 6777777778899999999999999999987 58899887777777666 999999999999999876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-05 Score=78.44 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=198.4
Q ss_pred hhhhhH-HHHHH---HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChh
Q psy8681 54 KLLEKA-KAWKK---AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 54 ~~lP~~-~~W~~---~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~ 127 (521)
...|.. ..|+. ..-.+..-.++-+++|+ |+|..|..+ .+.- ...+. .-.++.-+..--+.|+.+
T Consensus 66 ~~~~~~~~~w~~~rKrrra~~~~~egl~~l~e--------G~~~qAEkl~~rna--e~~e~p~l~~l~aA~AA~qrgd~~ 135 (400)
T COG3071 66 LRTPAHTRGWFSRRKRRRARKALNEGLLKLFE--------GDFQQAEKLLRRNA--EHGEQPVLAYLLAAEAAQQRGDED 135 (400)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHhh--hcCcchHHHHHHHHHHHHhcccHH
Confidence 356777 88876 22222223455677777 888888888 8876 66663 556777777777888888
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
.+-....++-+.-|+ ..-.+.+.-+......+ ++..|+.-...++...|.+. .+
T Consensus 136 ~an~yL~eaae~~~~--~~l~v~ltrarlll~~~----------------------d~~aA~~~v~~ll~~~pr~~--~v 189 (400)
T COG3071 136 RANRYLAEAAELAGD--DTLAVELTRARLLLNRR----------------------DYPAARENVDQLLEMTPRHP--EV 189 (400)
T ss_pred HHHHHHHHHhccCCC--chHHHHHHHHHHHHhCC----------------------CchhHHHHHHHHHHhCcCCh--HH
Confidence 888888888776432 23344555566666665 77777777777777766655 34
Q ss_pred HHHHHHHHHHcCChhhHHHHHH--hh------------HHHHHHHH----------------HhhCC----CCHHHHHHH
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIV--SK------------RKFQYEEE----------------VNSNP----NNYDAWFDY 253 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~--~k------------rr~~ye~a----------------l~~~P----~~~~~W~~y 253 (521)
...........|+...+..++. .| ....++-. .+.-| +++.+-..|
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~ 269 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHH
Confidence 4434444444454444333220 00 01112211 11122 456777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHH--HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTKFAELE--SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le--~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+..+.+.|+.++|..+.+.+++..-+..+..+. ...++...=.+..+.++...|.+ +.++...+.++.+++.+.+|
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHH
Confidence 888899999999999999999864333233332 24578888888899999877654 48999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 332 RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
...|+.++...|+...|...+..+...|. ...|-++++.++...-
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQLGE---PEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998 9999999999996543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-07 Score=98.86 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=127.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
.-.....++.+..+...+-+++.....-+..+.....++..+.+.| .+++|..+++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g----------------------~~~ea~~~l~~~ 112 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH----------------------RSDEGLAVWRGI 112 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC----------------------CcHHHHHHHHHH
Confidence 3344445555555555555555543322345777888888888887 899999999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
++..|.+. ..+..++...++.+..+.|... +++++...|+++...+.++..+.+.|+.++|..+|++++.
T Consensus 113 ~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~--------~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 113 HQRFPDSS--EAFILMLRGVKRQQGIEAGRAE--------IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HhhCCCcH--HHHHHHHHHHHHhccHHHHHHH--------HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999887 7888888888888988888766 9999999999999999999999999999999999999998
Q ss_pred cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 276 NIPPTK-----FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 276 ~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
..|... ++.+....|+.+.|...|++|+...
T Consensus 183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 777654 7888888999999999999998843
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=87.15 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=21.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|++++..+|.+..+++.++..+...|++++|...|++++...|+
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444444444455555555555555555555555555444443
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-06 Score=89.38 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
..+|...+.+....+..++|+..+..|-.++|.+. -+.+....|....|...|..|+..+|.+ ...-.+.+..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHH
Confidence 35788888888899999999999999999999876 2456778899999999999999977754 3466777778
Q ss_pred HHhcCChHHHHH--HHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 322 EVGQGERDKVRE--LHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 322 e~~~g~~~~Ar~--l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+.+.|+-.-|.. +...+++..| +++.|..++......|+ .+.|-..|.-|++.-+.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 888887666555 9999999997 79999999999999999 9999999999999877665
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=79.30 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=128.0
Q ss_pred hhhHHHHHHHH---HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFE---EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e---~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
.+.|..|-... ...|..+-|..++.+....+| .+..+-.-.|.+.+..+ .++
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~----------------------~~~ 103 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATG----------------------NYK 103 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhh----------------------chh
Confidence 35565555443 346788888888888888776 35666666777777777 889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
.|.++|+..|+-+|.+. .++..-+.+.+..|....+..- ...-+..+|.|.++|..++.++...|+++.|
T Consensus 104 ~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~--------ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKE--------LNEYLDKFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHH--------HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 99999999999999887 6777777778888876666544 7777888999999999999999988888888
Q ss_pred HHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCC
Q psy8681 267 RETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ---GERDKVRELHERLLERTV 343 (521)
Q Consensus 267 r~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~---g~~~~Ar~l~eral~~~~ 343 (521)
.-+|+..+-..|.++ .....|.+...-. .++..||++|.++|+++|
T Consensus 174 ~fClEE~ll~~P~n~-------------------------------l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNP-------------------------------LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHcCCCcH-------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 888888887777543 2333344333222 356777788888888776
Q ss_pred -CHHHHHHHH
Q psy8681 344 -HVKVWMNYA 352 (521)
Q Consensus 344 -~~~vwi~ya 352 (521)
+...|....
T Consensus 223 ~~~ral~GI~ 232 (289)
T KOG3060|consen 223 KNLRALFGIY 232 (289)
T ss_pred HhHHHHHHHH
Confidence 444454433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-07 Score=81.48 Aligned_cols=123 Identities=15% Similarity=-0.076 Sum_probs=107.6
Q ss_pred HH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH
Q psy8681 97 ED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175 (521)
Q Consensus 97 ~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l 175 (521)
.+ ++++ ...|+. |..++......|+++.|...|.+++...| .+..+|..++......|
T Consensus 14 ~~~~~al--~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g-------------- 72 (144)
T PRK15359 14 DILKQLL--SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLK-------------- 72 (144)
T ss_pred HHHHHHH--HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHh--------------
Confidence 45 7888 777753 66788899999999999999999999854 57889999999998888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
+++.|...|++++...|.+. ..|..++......|+.+.|... |++++..+|.++..|...+.
T Consensus 73 --------~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~l~~~g~~~eAi~~--------~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 73 --------EYTTAINFYGHALMLDASHP--EPVYQTGVCLKMMGEPGLAREA--------FQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred --------hHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999887 7888888888899999999877 99999999999999987776
Q ss_pred HHH
Q psy8681 256 LLE 258 (521)
Q Consensus 256 ~~~ 258 (521)
...
T Consensus 135 ~~~ 137 (144)
T PRK15359 135 AQI 137 (144)
T ss_pred HHH
Confidence 654
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-05 Score=81.33 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCHHHHHHHHHH-HHHcCCchhhHHHHHHHHHHHHHhccchh-h
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT-------VHVKVWMNYAQF-EMSSGDEDSVSLARRVFERANQALKASSE-K 384 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~-------~~~~vwi~ya~~-e~~~g~~~~~~~AR~vferAl~~~~~~~~-~ 384 (521)
+-...+++.+.+|++..|..++...+... .|.+.-+.++.+ ..+.++ .+.|-+++..|+.....+.. +
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~---~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD---NDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC---CccHHHHHHHHHHHHHHhcccc
Confidence 33444444555666666666666322110 122222222222 223333 56677777777766544311 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch----hhh--hhhc-----ccccCCCCCCeeEEEEeecCCcccCCCcHH
Q psy8681 385 EERVMLLEAWKEFEAQHGDDESRAKLNSKLPR----RAK--KRVK-----TYNDEGVEEGWEEVFDYIFPEDEAAKPNLK 453 (521)
Q Consensus 385 ~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~----~v~--krr~-----~~~~~~~~~~~~e~~d~if~e~~~~~~~~~ 453 (521)
.....+|.....|+.++|+.+++..+++.+-+ ... -++. +.++ .-+.+--+++|+......++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~e-----ka~~l~k~L~p~~~l~~vdVd 529 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPE-----KAESLSKKLPPLKGLKAVDVD 529 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHH-----HHHHHhhcCCCcccchhcCch
Confidence 33456777778899999999887766655522 110 0000 1111 235566788888765444445
Q ss_pred HHHHH
Q psy8681 454 LLEKA 458 (521)
Q Consensus 454 ~~~~a 458 (521)
=|+.+
T Consensus 530 ~LE~s 534 (652)
T KOG2376|consen 530 ALEKS 534 (652)
T ss_pred Hhhhc
Confidence 55543
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-06 Score=87.02 Aligned_cols=251 Identities=11% Similarity=0.097 Sum_probs=187.5
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.++|.....+ +..+ ..+| .+++....|-.+...|+.++|-..-..++.. ++.++-.|..|+-+...-+
T Consensus 20 ~kQYkkgLK~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK----- 89 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDK----- 89 (700)
T ss_pred HHHHHhHHHHHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhh-----
Confidence 4778888999 9999 9999 6899999999999999999999999999986 4456788999998888777
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
+|++|+..|..||...|.+. .+|..+.-+..+.|+.+....+ -.+.+...|..
T Consensus 90 -----------------~Y~eaiKcy~nAl~~~~dN~--qilrDlslLQ~QmRd~~~~~~t--------r~~LLql~~~~ 142 (700)
T KOG1156|consen 90 -----------------KYDEAIKCYRNALKIEKDNL--QILRDLSLLQIQMRDYEGYLET--------RNQLLQLRPSQ 142 (700)
T ss_pred -----------------hHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhhhHHHH--------HHHHHHhhhhh
Confidence 99999999999999999987 8999999999999998887766 67778889999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---Cchh-H---------HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANI---PPTK-F---------AELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~---P~~~-~---------a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
-..|+.++....-.|+...|..+.+.-.+.. |... | .......|.++.|......--... .+ ...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~D-kla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VD-KLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HH-HHH
Confidence 9999999999999999999988888776654 3332 2 122335577666666554321110 01 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEM-SSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~-~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+-..-++++...|++++|..+|..++..+|+ ..-+..+-.... -.+. ...-..+|...-+..|..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~---~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDM---LEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhcCccc
Confidence 3444567888999999999999999999874 444433333332 1122 333346666666555543
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-06 Score=79.38 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
..+-|..+++.....+|.+. .+-..++-+....|+...|.++ |+..|..+|.|..++-.-+......|..
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~~~A~e~--------y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNYKEAIEY--------YESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred chHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhchhhHHHH--------HHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 56677777777777788776 5666666666677777777766 8888888888877777666666666655
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
-.|+.-+..-+..+| . +..+|....+++...|.+.+|.-+|+.++-..|
T Consensus 137 l~aIk~ln~YL~~F~-----------------------------~--D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFM-----------------------------N--DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHHHHHhc-----------------------------C--cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 555555444333333 2 357999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 344 H-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 344 ~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+ +-.+..|+......|.-+++.-||+.|.+|++.+|.+
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 5 5567779999998887778999999999999999854
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-05 Score=82.55 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=75.2
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHH
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~ 366 (521)
..++.+.|+.....|-...+. ...+|..-+......|...+|...|..++...| |+..-.++|..+...|+ .....
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~ 738 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAE 738 (799)
T ss_pred hcCCchHHHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHH
Confidence 334444444444444333322 123333333444456777778888888888776 67788888888888775 44666
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q psy8681 367 ARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~ 413 (521)
+|.++..|+...|.+. ..|......-+..|+.+.+..+..-
T Consensus 739 ~~~~L~dalr~dp~n~------eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNH------EAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhhCCCCH------HHHHHHHHHHHHccchHHHHHHHHH
Confidence 6778888888888874 4666666666688998877766543
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=84.39 Aligned_cols=330 Identities=17% Similarity=0.148 Sum_probs=190.0
Q ss_pred CchhhhhhHHHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH---HhhhccCCCCChhhHHHHHHHHHHcCC
Q psy8681 51 PNLKLLEKAKAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEED---ERKDEGDRDSDTTYGMRELVFEEQNGF 125 (521)
Q Consensus 51 rai~~lP~~~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~---eral~~~~~P~~~~W~~~a~~e~~~g~ 125 (521)
++|+......+|-. .|.-....++-|.-++ |+...||.. +++. ..|+ ..=.+.+-+-...|-
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVCl---------Ghm~~aRgaRAlR~a~---q~~~-e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCL---------GHMKNARGARALRRAQ---QNGE-EDEAKVAVLAIELGM 815 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhh---------hhhhhhhhHHHHHHHH---hCCc-chhhHHHHHHHHHhh
Confidence 55554433377876 7777767777766554 556655554 4444 3342 333455666677788
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh-hhccccchhhHHHHHhh--hhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR-EKYGDRAGIEDVIVSKR--KFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
+++|..+|.++-... .-..++.+.+.|.+... +...+-..+.++|-..+ +...++++.|.+.|+++=. |.
T Consensus 816 lEeA~~lYr~ckR~D----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha- 888 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYD----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV--HA- 888 (1416)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--hH-
Confidence 889999998886541 00122222222222111 00000000111111100 0011244555555554321 11
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
..+...+.. +...+ ++-+. --.+..+|.-++.++++.|+.+.|...|..|-..+....
T Consensus 889 --fev~rmL~e------~p~~~------------e~Yv~-~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 889 --FEVFRMLKE------YPKQI------------EQYVR-RKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred --HHHHHHHHh------ChHHH------------HHHHH-hccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 112222111 01111 11111 124568899999999999999999999999865432211
Q ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHc------CC-CCCCcHHHHHHHH----------
Q psy8681 282 -------------------------FAELESLLGDMERARAIYELAIS------QP-RLDMPELVWKAYI---------- 319 (521)
Q Consensus 282 -------------------------~a~le~~~g~~e~Ar~ife~al~------~~-~~~~~~~lw~~yi---------- 319 (521)
++..++..|++.+|...|.+|-. .+ ..++...+|+...
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 57889999999999998887743 11 2334456665422
Q ss_pred -HHHHhc-CChHHHHHHHHHH------Hhc-------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHH--
Q psy8681 320 -DFEVGQ-GERDKVRELHERL------LER-------------------TVHVKVWMNYAQFEMSSGDEDSVSLARRV-- 370 (521)
Q Consensus 320 -~~e~~~-g~~~~Ar~l~era------l~~-------------------~~~~~vwi~ya~~e~~~g~~~~~~~AR~v-- 370 (521)
.++... |..++|..+|.++ |+. ..++++....+.|...+.+ +++|..+
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~ 1104 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLC 1104 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHH
Confidence 223333 4788888888764 211 1368888888888887765 8887665
Q ss_pred ----HHHHHHHhccchh-------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcc
Q psy8681 371 ----FERANQALKASSE-------------------KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKT 424 (521)
Q Consensus 371 ----ferAl~~~~~~~~-------------------~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~ 424 (521)
|++|+..|...+. ...|..+++...+|-.+.|+...+.+-....-.+++.=|.+
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraL 1181 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRAL 1181 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHH
Confidence 7888888765421 35789999999999999999998877777777776554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.2e-06 Score=91.07 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=125.5
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|..++..+...+++++|..+.+.+++..|+ ...+|+..+-+..+.+ .+.+..-+ -+........
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~-~~~~~~lv---~~l~~~~~~~ 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRR-PLNDSNLL---NLIDSFSQNL 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhc-chhhhhhh---hhhhhccccc
Confidence 3346 5889999999999999999999999999998764 4556666655555444 01100000 0000000001
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+.-...+|...+ ..|.+. .+...++..+.+.|..+.+..+ |+++|..+|+|+.+-..|+-++... +.
T Consensus 98 ~~~~ve~~~~~i~-~~~~~k--~Al~~LA~~Ydk~g~~~ka~~~--------yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 98 KWAIVEHICDKIL-LYGENK--LALRTLAEAYAKLNENKKLKGV--------WERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred chhHHHHHHHHHH-hhhhhh--HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2211222222222 233333 3444444444555555555544 5555555555555555555555555 55
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT- 342 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~- 342 (521)
++|...+.+|+... .....+..+. .+|..|+... .-+++.-..+.++.+...
T Consensus 166 ~KA~~m~~KAV~~~---------i~~kq~~~~~----------------e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 166 EKAITYLKKAIYRF---------IKKKQYVGIE----------------EIWSKLVHYN--SDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHHHH---------HhhhcchHHH----------------HHHHHHHhcC--cccchHHHHHHHHHHhhhc
Confidence 55555555555431 1112333333 3444444221 112222222222222221
Q ss_pred --CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 343 --VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 343 --~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
.-+.+|.-+-..+....+ ++.+..+|..++++.|+|. ..+..|...|. ..|++...++..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~n~--~a~~~l~~~y~---~kY~~~~~~ee~ 280 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNKNN--KAREELIRFYK---EKYKDHSLLEDY 280 (906)
T ss_pred cchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCcch--hhHHHHHHHHH---HHccCcchHHHH
Confidence 123444444444444444 7788888888888877653 34566666666 355554444443
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-05 Score=73.15 Aligned_cols=275 Identities=13% Similarity=0.049 Sum_probs=193.5
Q ss_pred HhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc
Q psy8681 68 EKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL 145 (521)
Q Consensus 68 ~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~ 145 (521)
++.++...+.+-++--...+..|.+..|... -.+| ...| +......-+..+...|...-|..-+.+.|++-|+
T Consensus 30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD--- 104 (504)
T KOG0624|consen 30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD--- 104 (504)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---
Confidence 3445544444444311114456788889888 8999 8899 6788888888898999989999999999988552
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHH----------HHHHHHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEI----------YKAYTIH 214 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l----------~~~~~~~ 214 (521)
....-+.-+.....+| ++++|..-|.+.|+..|.+.. ... |..--.+
T Consensus 105 F~~ARiQRg~vllK~G----------------------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQG----------------------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL 162 (504)
T ss_pred HHHHHHHhchhhhhcc----------------------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence 2222233344555555 999999999999999995431 111 2211111
Q ss_pred HH--HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHH
Q psy8681 215 EK--KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELES 287 (521)
Q Consensus 215 e~--~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~ 287 (521)
.. -.|+...++.. ....|...|-+..++..-+..+...|++..|+.-+..+-+...++. .+.|+.
T Consensus 163 ~s~~~~GD~~~ai~~--------i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEM--------ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHhcCCchhhHHHH--------HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 11 23677777766 7888999999999999999999999999999999988877655544 578889
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH------------HHHhcCChHHHHHHHHHHHhcCCC-HHHHHH----
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYID------------FEVGQGERDKVRELHERLLERTVH-VKVWMN---- 350 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~------------~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~---- 350 (521)
..|+.+.+......++..+|.. ..-+-.|-. -.++.+++..+.+.++..++..|. +.+-+.
T Consensus 235 ~vgd~~~sL~~iRECLKldpdH--K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDH--KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcch--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 9999999999999999965532 112221211 134578899999999999998875 333222
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 351 YAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 351 ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
...+... ++++-+|.+...+++...|++.
T Consensus 313 ~c~C~~~---d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 313 LCTCYRE---DEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred eeecccc---cCCHHHHHHHHHHHHhcCchHH
Confidence 2222222 3459999999999999998864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.7e-05 Score=80.66 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
++.+-.+.+....|++++|..+++..-..+. +...+...-|.+....| .+++|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~rA~ll~kLg----------------------~~~eA~~ 59 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEKRAELLLKLG----------------------RKEEAEK 59 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHHHHHHHHHcC----------------------CHHHHHH
Confidence 3444455566666677776666666555432 12334444555555555 6667777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIH 214 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~ 214 (521)
+|...|+.+|.+. ..|..|...
T Consensus 60 ~y~~Li~rNPdn~--~Yy~~L~~~ 81 (517)
T PF12569_consen 60 IYRELIDRNPDNY--DYYRGLEEA 81 (517)
T ss_pred HHHHHHHHCCCcH--HHHHHHHHH
Confidence 7777777777665 445544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-06 Score=90.21 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=117.9
Q ss_pred HHHHhcCChhhhhhhcCCCcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKENEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERA 136 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~A 136 (521)
.+..++|-...|..||++|.- +...|.-..|-.+ .+-+ ...|++.+|..+|++... -.+|++|
T Consensus 406 ell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~l--ek~~d~~lyc~LGDv~~d-------~s~yEka 476 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQEL--EKDPDPRLYCLLGDVLHD-------PSLYEKA 476 (777)
T ss_pred HHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHh--cCCCcchhHHHhhhhccC-------hHHHHHH
Confidence 444566666666666663322 5555555555555 5555 533455555555544422 2344444
Q ss_pred HHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 137 VEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 137 l~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.+... ..++.+-..++....+. ++++.+-..++.+++..|... ..|..++...-
T Consensus 477 wElsn--~~sarA~r~~~~~~~~~----------------------~~fs~~~~hle~sl~~nplq~--~~wf~~G~~AL 530 (777)
T KOG1128|consen 477 WELSN--YISARAQRSLALLILSN----------------------KDFSEADKHLERSLEINPLQL--GTWFGLGCAAL 530 (777)
T ss_pred HHHhh--hhhHHHHHhhccccccc----------------------hhHHHHHHHHHHHhhcCccch--hHHHhccHHHH
Confidence 44321 01112112222222222 377777777888887777765 67777766666
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD 291 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~ 291 (521)
+.++...+... |.+++...|.+...|.++...+...|...+|...+.+|++.+-.+- |..+-...|+
T Consensus 531 qlek~q~av~a--------F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 531 QLEKEQAAVKA--------FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHhhhHHHHHH--------HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 66666666544 7788888888888888888888777777778888888777652211 5556666777
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 292 MERARAIYELAISQ 305 (521)
Q Consensus 292 ~e~Ar~ife~al~~ 305 (521)
++.|.++|.+.+..
T Consensus 603 ~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777663
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=91.74 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..|-..+.+|...|.-.+|..+..+-++. ++++.+|..++++..... -++.|-.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s----------------------~yEkawE 478 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPS----------------------LYEKAWE 478 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChH----------------------HHHHHHH
Confidence 45666666666666555555555555552 124555555555543332 3344433
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+++..-. .....++..-...++++.+... ++..+..+|-....|+.++-...+.++...|...|
T Consensus 479 lsn~~sa--------rA~r~~~~~~~~~~~fs~~~~h--------le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 479 LSNYISA--------RAQRSLALLILSNKDFSEADKH--------LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HhhhhhH--------HHHHhhccccccchhHHHHHHH--------HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 3333211 1112222222334566666544 99999999999999999999999999999999999
Q ss_pred HHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 271 ERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 271 erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+++...|++. ++..+..+|...+|...+..|++.+. .+..+|..|.......|+++.|..+|.+.+...
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999876 56667889999999999999999652 245799999999999999999999999999864
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-06 Score=74.98 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|+.++...|.+. .+|..++.+....|+.+.+... |++++..+|.++..|..++.++...|+.
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDA--------YALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 55555555555555555543 4555555555555555554443 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
+.|...|++++...|.
T Consensus 102 ~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 102 ESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHhccc
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00033 Score=74.85 Aligned_cols=267 Identities=13% Similarity=0.124 Sum_probs=168.9
Q ss_pred HHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 62 WKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 62 W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
-|+ .+....|+++.|...++ -++. ++++|++++|..+ ...| ..+| +...+..+.......
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHhhh
Confidence 345 66778899999999988 1332 7788999999999 9999 8888 566666666655222
Q ss_pred -----CChhHHHHHHHHHHHhcCCc---------cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh-hhh-hhhHHH
Q psy8681 124 -----GFVSGARKVYERAVEFFGEE---------NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR-KFQ-YEEHER 187 (521)
Q Consensus 124 -----g~~~~Ar~vye~Al~~~~~~---------~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~e~ 187 (521)
.+.+....+|+..-..+|.- .....-+...+.-..... .-. +++..|-.-. ++. ......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~-l~K---gvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ-LRK---GVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH-Hhc---CCchHHHHHHHHHcChhHHHH
Confidence 24567777888776655521 111111111111110000 000 1222211110 111 011112
Q ss_pred HHHHHHH---HHhcC---C-------hhhHHHHHHHH--HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 188 ARVIYKY---ALDHI---P-------KDRTAEIYKAY--TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 188 Ar~iy~~---aL~~~---P-------~~~~~~l~~~~--~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
...++.. .++.. + ......+|..| ++.....|+.+.|... .+++|...|..+++++.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~--------Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY--------IDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH--------HHHHHhcCCCcHHHHHH
Confidence 2222222 22111 0 11223578766 5667788999998877 89999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC--CC-C--cHHHHH--HHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR--LD-M--PELVWK--AYID 320 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~--~~-~--~~~lw~--~yi~ 320 (521)
-++++...|++.+|-..++.|-...+.+- .+....+.|.++.|..++..-..... .. . ...+|. ..+.
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988766 45667789999999999888766431 11 0 023453 2345
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q psy8681 321 FEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+.+.|++..|.+-|...++.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 5678899999999999888763
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-06 Score=72.84 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
.|++++...|.+. .....++......|+...+... |+.++..+|.+..+|..++.++...|++++|..+|
T Consensus 5 ~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 5 TLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKL--------FQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443 3333444444445555555443 55555555555555555555555555555555555
Q ss_pred HHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 271 ERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 271 erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++++...|.+ ..+|..++.++...|+++.|...|+++++..|
T Consensus 75 ~~~~~~~p~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALDPDD-------------------------------PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcCCCC-------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5555554433 23444444455555555555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-05 Score=81.36 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+|...|++.+..+|.|.++|+.|+.+.........-. + .....-.+...++|++|++..|.
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~----~-------------~~~~a~~E~klsilerAL~~np~-- 63 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS----K-------------AERRALAERKLSILERALKHNPD-- 63 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc----h-------------hhHHHHHHHHHHHHHHHHHhCCC--
Confidence 4556799999999999999999999987653211110 0 00011234456688888886553
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh------
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE------ 383 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~------ 383 (521)
+..||..|+....+..+.+.....+++++..+| ++.+|..|..|.......-.+...+.+|.+++..+.....
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~ 143 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSH 143 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccc
Confidence 578999999988888888999999999999887 6899999999988743222388999999999988754321
Q ss_pred ------hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 384 ------KEERVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 384 ------~~~~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
....+.++..+..|....|-.+.+-.+.
T Consensus 144 ~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~ 177 (321)
T PF08424_consen 144 PDLPELEEFMLYVFLRLCRFLRQAGYTERAVALW 177 (321)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHH
Confidence 2345677777888999999987755444
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-05 Score=85.53 Aligned_cols=55 Identities=15% Similarity=-0.043 Sum_probs=47.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
++.-++...|..- +.++ ...| +..+|..++..|-..|.+..|.++|.+|..+.|.
T Consensus 572 yLea~n~h~aV~~fQsAL--R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSAL--RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred ccCccchhhHHHHHHHHh--cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 5556677777777 8888 8899 8999999999999999999999999999988663
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.2e-06 Score=82.53 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE--- 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~--- 260 (521)
-.+.-..||++||+.+|.+. .|+..|+..-.+..+.+.+... +++++..+|+++.+|..|+.+....
T Consensus 46 ~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~l~~~--------we~~l~~~~~~~~LW~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEKLAKK--------WEELLFKNPGSPELWREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHHCCCChHHHHHHHHHHHHHhcc
Confidence 35677889999999999776 8999999887777777666654 9999999999999999999998873
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHcCC--HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 261 GNADLIRETYERAIANIPPTKFAELESLLGD--MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~--~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
..++.++.+|.+++....... .|. .......++.. ...+...+..|+.+.|..+.|..+++-.
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~-------~~~~~~~~~~~~~e~~--------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRR-------SGRMTSHPDLPELEEF--------MLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhh-------ccccccccchhhHHHH--------HHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 478999999999988643211 000 00000000000 1235666677888888888888888888
Q ss_pred HhcC
Q psy8681 339 LERT 342 (521)
Q Consensus 339 l~~~ 342 (521)
++.+
T Consensus 181 lE~n 184 (321)
T PF08424_consen 181 LEFN 184 (321)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-05 Score=85.82 Aligned_cols=222 Identities=10% Similarity=0.103 Sum_probs=136.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.+.|+++.|..+ +.++ ..+| +...|...|-++.+.++++.+.-| .++..++.+... .+-..+. ...+ .
T Consensus 41 ~~~~~~~deai~i~~~~l--~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~---~~i~-~ 111 (906)
T PRK14720 41 YKSENLTDEAKDICEEHL--KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHIC---DKIL-L 111 (906)
T ss_pred HHhcCCHHHHHHHHHHHH--HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHH---HHHH-h
Confidence 4466788888888 8999 9999 689999999999999998888888 788776643211 1111111 1111 0
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
++... .....++..+-+.|..++|..+|+++|+..|.+. .+.+.|+.+.... +.+.|..+ |.+|+..
T Consensus 112 ~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m--------~~KAV~~- 178 (906)
T PRK14720 112 YGENK-LALRTLAEAYAKLNENKKLKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITY--------LKKAIYR- 178 (906)
T ss_pred hhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHH--------HHHHHHH-
Confidence 00000 0000112222233599999999999999999987 7777777776666 88888766 8888765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHc-CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLL-GDMERARAIYELAISQPRLDMPELVWKAYID 320 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~-g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~ 320 (521)
+.....+..+..+.++.+...|.+. +..++... +... |.+++ .+|.-.-.
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-----~~~~~---------~~~~~l~~ 231 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-----FTRLV---------GLLEDLYE 231 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-----cchhH---------HHHHHHHH
Confidence 3444567888888888888888754 22222211 1111 22222 12222223
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 321 FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
.+...++++.+..+++.+|...| +......++.++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33466778888888888888765 3444444444443
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0004 Score=71.87 Aligned_cols=262 Identities=12% Similarity=0.037 Sum_probs=167.3
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
+..|+++.|..+ -.+| .+.| +..++..-...+...|+++.|.+--.+++++.| ..+.-|...+......|
T Consensus 13 ~s~~d~~~ai~~~t~ai--~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p---~w~kgy~r~Gaa~~~lg--- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAI--MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP---DWAKGYSRKGAALFGLG--- 84 (539)
T ss_pred cccccHHHHHHHHHHHH--ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC---chhhHHHHhHHHHHhcc---
Confidence 346889999999 9999 8998 788888888888899999999888888888865 46677777776666666
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-----------------CCh------
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-----------------GDR------ 221 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-----------------G~~------ 221 (521)
+|++|+..|..+|+..|.+. .|...+.+.+... ++.
T Consensus 85 -------------------~~~eA~~ay~~GL~~d~~n~--~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~ 143 (539)
T KOG0548|consen 85 -------------------DYEEAILAYSEGLEKDPSNK--QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSL 143 (539)
T ss_pred -------------------cHHHHHHHHHHHhhcCCchH--HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhh
Confidence 99999999999999999886 4554444332100 000
Q ss_pred -------------------------hhHHHHH------------------------------------------------
Q psy8681 222 -------------------------AGIEDVI------------------------------------------------ 228 (521)
Q Consensus 222 -------------------------~~a~~~i------------------------------------------------ 228 (521)
.....+.
T Consensus 144 ~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 144 SDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred ccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 0000000
Q ss_pred ----------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------
Q psy8681 229 ----------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------- 281 (521)
Q Consensus 229 ----------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------- 281 (521)
...+...|..++.++ .+.......+..+...|.....+.....|+...-...
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 000123344444444 4444444444444444444444444444433221110
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCC--CCc----------HHHHHHHHHH------------HHhcCChHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRL--DMP----------ELVWKAYIDF------------EVGQGERDKVRELHE 336 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~--~~~----------~~lw~~yi~~------------e~~~g~~~~Ar~l~e 336 (521)
.+..+...|+++.|+..|.+++..... ... ..--..|++. ....|++..|...|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 222445568888888888888863211 000 0011112221 234688999999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 337 RLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 337 ral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.+|...| ++.++.+-+..+.++|. +..|.+-.+.+++..|+.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGE---YPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCchH
Confidence 9999887 57788888888888888 888888888888887765
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-05 Score=77.71 Aligned_cols=268 Identities=13% Similarity=0.026 Sum_probs=176.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHHHHHHHh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAFAKFEEG 159 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~a~~e~~ 159 (521)
......|.+|... ..+| ..+| ++..|..-+..++..|+++.|..-+.+.+++-+..+. -.......+.....
T Consensus 59 ~yk~k~Y~nal~~yt~Ai--~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAI--DMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHH--HhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 4455678889999 9999 9999 7889999999999999999999988888887442110 11222222222221
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY-TIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~-~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
.. .+.+ .+......|..-++..+.......+..-|..+ +....-.|+..++.+. =-.
T Consensus 137 ~~-~~~~-------------~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e--------a~~ 194 (486)
T KOG0550|consen 137 EE-KLKS-------------KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE--------AID 194 (486)
T ss_pred HH-Hhhh-------------hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH--------HHH
Confidence 11 0000 00000111111122211111100100111111 2333455777776654 445
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------------HHHHHHHcCCHHHHHHHHHH
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------------~a~le~~~g~~e~Ar~ife~ 301 (521)
.+..++.+.++...-+.++.-+++.+.+...|++++...|... -++--.+.|++..|-.+|..
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 6677899988888888888888999999999999999999865 23334578999999999999
Q ss_pred HHcCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 302 AISQPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 302 al~~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
||..+|.+. ...++..-.....+.|+..+|+.-.+.++.+.+ ..+.++.-+......+. ++.|+.-|++|++.-
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~---~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK---WEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Confidence 999766432 234444445567788999999999999999986 57788888888777776 999999999999876
Q ss_pred cc
Q psy8681 379 KA 380 (521)
Q Consensus 379 ~~ 380 (521)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 65
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-05 Score=71.18 Aligned_cols=144 Identities=21% Similarity=0.262 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+-+.+..+...++...|.+. .+...++...-..|++..+... +.++....|++..+|..++-.+.+.|+.
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~--------~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSV--------LRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred cccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHH--------HHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 33333444444444455554 5666688877888888888866 8889899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
+.|+..|-+|++..|... ++.++.-.|+++.|+.++..+...++-+ ..+-....-.....|++..|..+-..-
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad--~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD--SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999998887765 4555666788888888888887766543 345555555556778888887776554
Q ss_pred H
Q psy8681 339 L 339 (521)
Q Consensus 339 l 339 (521)
+
T Consensus 229 ~ 229 (257)
T COG5010 229 L 229 (257)
T ss_pred c
Confidence 4
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.1e-05 Score=70.63 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=132.1
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
-+.+ ...| +..+ ..+...+...|+-+.+..+..+++...| .+..+...++....+.|
T Consensus 57 ~~~~--~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~---~d~~ll~~~gk~~~~~g---------------- 114 (257)
T COG5010 57 GAAV--LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP---KDRELLAAQGKNQIRNG---------------- 114 (257)
T ss_pred HHHH--hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc---ccHHHHHHHHHHHHHhc----------------
Confidence 4444 6677 5666 8888888888887777777777665533 35666666777777777
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
++..|...+.++....|++. .+|...+-.+.+.|+++.+... |.++++..|+++.+..+++-.+
T Consensus 115 ------~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~Gr~~~Ar~a--------y~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 115 ------NFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQLGRFDEARRA--------YRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred ------chHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHccChhHHHHH--------HHHHHHhccCCchhhhhHHHHH
Confidence 89999999999999999887 8999998888899998888755 9999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al 303 (521)
.-.|+...|+.++.++...-+.+. ++.+-...|++..|+.|-..-+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999888766433 5556667889998888755433
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.6e-05 Score=80.15 Aligned_cols=257 Identities=17% Similarity=0.138 Sum_probs=148.1
Q ss_pred HhcCChhhhhhhcC--CCcH-----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH-
Q psy8681 68 EKQGNKIGEEGANK--ENEE-----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE- 138 (521)
Q Consensus 68 ~~~gn~~~Ar~ife--~P~~-----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~- 138 (521)
..+|-+++|..+|. +-.+ +..+|.+++|.++ +--= .+|- -.++..|+..+...++++.|...|+++=.
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~D--RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKD--RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcc--ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 34455555555554 1111 4455666666666 4322 2222 24688888888888899999999988521
Q ss_pred ---------hcCC-------ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 139 ---------FFGE-------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 139 ---------~~~~-------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
..|. ...++.+|.-|+.+.++.| +.+.|..+|..|-+.+
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G----------------------emdaAl~~Y~~A~D~f--- 942 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG----------------------EMDAALSFYSSAKDYF--- 942 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc----------------------chHHHHHHHHHhhhhh---
Confidence 1110 1124567777777777776 8888888887765432
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------c
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA------N 276 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~------~ 276 (521)
..+...--.|+.+.|..+ .....|--+-+.+++.++..|++.+|...|.||-. +
T Consensus 943 -------s~VrI~C~qGk~~kAa~i-------------A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 943 -------SMVRIKCIQGKTDKAARI-------------AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred -------hheeeEeeccCchHHHHH-------------HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223444433321 22334555566677777777777777777766532 2
Q ss_pred CCchh-------------------HHHHHHHcC-CHHHHHHHHHHHH----------------------cCCCCCCcHHH
Q psy8681 277 IPPTK-------------------FAELESLLG-DMERARAIYELAI----------------------SQPRLDMPELV 314 (521)
Q Consensus 277 ~P~~~-------------------~a~le~~~g-~~e~Ar~ife~al----------------------~~~~~~~~~~l 314 (521)
+..+. -+..++.+| ...+|..+|.+|= +.-....++.+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 22221 223333333 5566655555431 10011235788
Q ss_pred HHHHHHHHHhcCChHHHHHH------HHHHHhcC----------------C----------CHHHHHHHHHHHHHcCCch
Q psy8681 315 WKAYIDFEVGQGERDKVREL------HERLLERT----------------V----------HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l------~eral~~~----------------~----------~~~vwi~ya~~e~~~g~~~ 362 (521)
.....+|.....+|++|..+ |+++|++| | -..+....+.++..+|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~-- 1160 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA-- 1160 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc--
Confidence 89999999999999999887 45666653 1 03456667888888877
Q ss_pred hhHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERAN 375 (521)
Q Consensus 363 ~~~~AR~vferAl 375 (521)
+..|-+-|.+|=
T Consensus 1161 -Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1161 -YHAATKKFTQAG 1172 (1416)
T ss_pred -hHHHHHHHhhhh
Confidence 666666666553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=75.31 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|+..+...+...|.+. .++...+++....|....|.+. |++++...|..+-+|+.|+..+.+.|++
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~--------~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIER--------LKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred ccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 66677777777776677665 5566666666666766666655 7777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+|..++.+.+...|.+. ++.-+..+|+..++... +.+.+...|+++.|...+.++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHHHHHHHHHH
Confidence 777777777777666654 34555555555444433 233333456666666666666
Q ss_pred HhcC-CCHHHHHH
Q psy8681 339 LERT-VHVKVWMN 350 (521)
Q Consensus 339 l~~~-~~~~vwi~ 350 (521)
.+.. ..-..|..
T Consensus 452 ~~~~~~~~~~~aR 464 (484)
T COG4783 452 SQQVKLGFPDWAR 464 (484)
T ss_pred HHhccCCcHHHHH
Confidence 6554 23344444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0043 Score=62.27 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+.+++-....++-+.-|+. ..........+.-..|+...+... ..+++...|.++.+-....+.+...|+.
T Consensus 133 d~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~--------v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 133 DEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAAREN--------VDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred cHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHH--------HHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 8889988888888763333 234566666777788888888766 8889999999999988888888888887
Q ss_pred HHHHHHHHHHHHcCCc--hh---------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 264 DLIRETYERAIANIPP--TK---------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~--~~---------------------------------------------~a~le~~~g~~e~Ar 296 (521)
..+..++...-+..-- .. |+.-...+|+.+.|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 7776666554432111 11 555566778888888
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+.+.++...- + +. ...++... .-++...-.+..+..++.+| ++.+|..++..+.+.+. +.+|...|+.|+
T Consensus 284 ~~i~~~Lk~~~-D--~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl 355 (400)
T COG3071 284 EIIEDALKRQW-D--PR-LCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAAL 355 (400)
T ss_pred HHHHHHHHhcc-C--hh-HHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 88877777432 1 12 23333322 45677777778888888776 68899999999999887 999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..-|+. +++..+-.++- +.|+...+..+....
T Consensus 356 ~~~~s~---~~~~~la~~~~----~~g~~~~A~~~r~e~ 387 (400)
T COG3071 356 KLRPSA---SDYAELADALD----QLGEPEEAEQVRREA 387 (400)
T ss_pred hcCCCh---hhHHHHHHHHH----HcCChHHHHHHHHHH
Confidence 887764 23333434433 678888887776443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-05 Score=67.77 Aligned_cols=84 Identities=6% Similarity=-0.111 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|+.++..+|.+. ..|..++......|+...|... |.+++..+|+++...+..+..+...|++
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~a--------Y~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYA--------YGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 55555555555555555544 4555555555555555555444 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 264 DLIRETYERAIANI 277 (521)
Q Consensus 264 ~~Ar~~~erAl~~~ 277 (521)
+.|+..|+.|+..+
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=60.97 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|+.++...|... .+|..++......|+.+.+... |++++...|.+..+|..++..+...|+.
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 15 DYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALED--------YEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred cHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 88999999999999888765 6777777777777888777766 8999999999889999999999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
+.|...+.+++...|.
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999998887763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0025 Score=73.80 Aligned_cols=293 Identities=11% Similarity=0.026 Sum_probs=183.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC--------C--hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS--------D--TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIA 152 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P--------~--~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~ 152 (521)
....|+++.|..+ .++. ...+ . ...-...+......|+++.|...+++++...+..... ...+..
T Consensus 419 ~~~~g~~~~a~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAE--QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHH--HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4456788888887 7665 3211 1 1222334555667899999999999999865421110 112222
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i 228 (521)
++......| +++.|+..|+.++...... ........++......|+...+...
T Consensus 497 lg~~~~~~G----------------------~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~- 553 (903)
T PRK04841 497 LGEVHHCKG----------------------ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET- 553 (903)
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH-
Confidence 333333344 9999999999998753221 1112334445566778999988876
Q ss_pred HhhHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----hh------HHHHHHHcC
Q psy8681 229 VSKRKFQYEEEVNSNP--------NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----TK------FAELESLLG 290 (521)
Q Consensus 229 ~~krr~~ye~al~~~P--------~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~----~~------~a~le~~~g 290 (521)
+++++.... ....++...+..+...|++++|...+++++..... .. .+.+....|
T Consensus 554 -------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 554 -------QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred -------HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 666665411 12233456677788889999999999999875332 11 456677899
Q ss_pred CHHHHHHHHHHHHcCCC-CCCcHHHHHH-----HHHHHHhcCChHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHcC
Q psy8681 291 DMERARAIYELAISQPR-LDMPELVWKA-----YIDFEVGQGERDKVRELHERLLERTV-H----VKVWMNYAQFEMSSG 359 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~-~~~~~~lw~~-----yi~~e~~~g~~~~Ar~l~eral~~~~-~----~~vwi~ya~~e~~~g 359 (521)
+++.|...+..+..... .... ..|.. .+......|+.+.|..++........ . ...+..++......|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999999865211 1101 11211 11233457899999999877665321 1 123566777778888
Q ss_pred CchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 360 DEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+ .++|...|++++......+........+..+...-...|+.+.+...+.+.
T Consensus 706 ~---~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 706 Q---FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred C---HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8 999999999999876554433333344444455556789988887777665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.001 Score=77.06 Aligned_cols=262 Identities=12% Similarity=0.019 Sum_probs=177.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD------TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAK 155 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~------~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~ 155 (521)
....|+++.|... ++++ ...|. ...+..++..+...|+++.|+..|++++......... ...+..++.
T Consensus 462 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEEAERLAELAL--AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHHHHHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4568899999999 9998 65552 1244566777788999999999999999864321111 122233444
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh-----h-HHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD-----R-TAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~-----~-~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
.....| +++.|...+++++...... . ...++...+......|+.+.+...
T Consensus 540 ~~~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~-- 595 (903)
T PRK04841 540 ILFAQG----------------------FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC-- 595 (903)
T ss_pred HHHHCC----------------------CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH--
Confidence 444455 9999999999988762211 0 112333445555667999888766
Q ss_pred hhHHHHHHHHHhhCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCH
Q psy8681 230 SKRKFQYEEEVNSNP----N-NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGDM 292 (521)
Q Consensus 230 ~krr~~ye~al~~~P----~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~ 292 (521)
+++++.... . ....+..++.++...|+.+.|...+.++....+... ........|+.
T Consensus 596 ------~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 596 ------ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred ------HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 677665422 1 244556677888899999999999999976432211 01223457899
Q ss_pred HHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHcCCchh
Q psy8681 293 ERARAIYELAISQPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERT---V----HVKVWMNYAQFEMSSGDEDS 363 (521)
Q Consensus 293 e~Ar~ife~al~~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~----~~~vwi~ya~~e~~~g~~~~ 363 (521)
+.|...+........... ....+......+...|++++|..+|++++... . ...+.+.++..+...|+
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~--- 746 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR--- 746 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC---
Confidence 999998877654221110 11224455666778999999999999999863 1 14467778888888898
Q ss_pred hHHHHHHHHHHHHHhccch
Q psy8681 364 VSLARRVFERANQALKASS 382 (521)
Q Consensus 364 ~~~AR~vferAl~~~~~~~ 382 (521)
.+.|+..+.+|+......+
T Consensus 747 ~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 747 KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 9999999999999887654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=64.34 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=71.3
Q ss_pred HHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 236 YEEEVNSNPNN---YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 236 ye~al~~~P~~---~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++..+..+|.+ ..+++.++..+...|++++|...|+.++...|+.. ++.+....|+++.|..+++.. .
T Consensus 34 ~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~ 112 (145)
T PF09976_consen 34 AEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-P 112 (145)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-c
Confidence 77788888877 56777888888888999999999999888775543 455666777777777777552 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
.+++ ...++...++++...|++++|+..|+++|
T Consensus 113 ~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAF--KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred Ccch--HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2222 34556666677777777777777777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00035 Score=71.70 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
..+...+.-....|..+.++.. +...+...|+|+-.|...+.++...++..+|.+.|++++...|...
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~--------l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKL--------LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 3444444444567888888876 8889999999999999999999999999999999999999999865
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
|+....+.|.+.+|..++...+...|.+ +..|..+...+..+|+..++...+-.+........-|+.++.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888888999999999999988876654 568888888888888888777766666554433333433333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.5e-05 Score=67.07 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.....|+......|+.+.|..+ |+-.+..+|.+++.|+.++..+...|++.+|...|.+|+...|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~--------f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARL--------FQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3444556666788999999987 9999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 282 -FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
.+.....+|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4566778888999999888888754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.5e-05 Score=79.16 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..++++.|..+|.+||...|.+. .+|..++......|+.+.|... |++++..+|.+..+|+.++.++...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~--------~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVAD--------ANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 33588899999999999888876 6777777777788888888766 8899999999889999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCchh
Q psy8681 261 GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|+++.|...|++|+...|.+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999888888754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00037 Score=71.81 Aligned_cols=155 Identities=14% Similarity=-0.038 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHH---hcCChhhHHHHHHHHHHHHH-HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYAL---DHIPKDRTAEIYKAYTIHEK-KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL---~~~P~~~~~~l~~~~~~~e~-~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
..++|..+|.+|+ ...|.......+.++..+.. .+|-.+... -.......-++++..+|.|+.+.+.++....-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~--~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELEL--AAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 6789999999999 88888776666777776665 334332111 11234466899999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l 334 (521)
.++.+.+...|++|+..+|++. ++.+....|+.++|+..+++|+...|..+...+.+.+++.+.. ..++.|..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 9999999999999999999977 3455667899999999999999988776666677777766644 457788888
Q ss_pred HHHHHhc
Q psy8681 335 HERLLER 341 (521)
Q Consensus 335 ~eral~~ 341 (521)
|-+-.+.
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 7665443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=61.04 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
++.+...+......|+++.|...|.+++...|+.+....++..++......+ +++.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~ 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----------------------KYADAA 59 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----------------------cHHHHH
Confidence 3567788888888888999999998888876654434566677777777776 888888
Q ss_pred HHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 190 VIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
.+|+.++...|.+. ...++..++......|+.+.+... |++++...|.+..+
T Consensus 60 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 60 KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT--------LQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH--------HHHHHHHCcCChhH
Confidence 89988888877642 125666777777778888887766 88888888887543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00063 Score=67.57 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=92.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHc-CCHHHHHHHHHHHHcC---CCC-CCcHHHHHHHHHHHHhcCCh
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTKFAELESLL-GDMERARAIYELAISQ---PRL-DMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~-g~~e~Ar~ife~al~~---~~~-~~~~~lw~~yi~~e~~~g~~ 328 (521)
+.++...|++..|-.++.+ .+.++... |+++.|...|++|+.. ... .....+....+.+..+.|++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHhcCcHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 3445556666666655555 66677666 8999999999998872 111 11245677788889999999
Q ss_pred HHHHHHHHHHHhcC---C----CH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHH---HHHHHHHHH
Q psy8681 329 DKVRELHERLLERT---V----HV-KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERV---MLLEAWKEF 397 (521)
Q Consensus 329 ~~Ar~l~eral~~~---~----~~-~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~---~l~~~~~~f 397 (521)
++|..+|++....+ + ++ ..++..+.+....|+ +..|+..|++....+|.-....+.. .|++++-
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-- 246 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-- 246 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH--
Confidence 99999999998764 1 12 356666667777787 9999999999988877543333332 3334433
Q ss_pred HHHcCCHHHHHHHHhhC
Q psy8681 398 EAQHGDDESRAKLNSKL 414 (521)
Q Consensus 398 E~~~G~~~~~~~v~~~~ 414 (521)
.||.+.+..+...+
T Consensus 247 ---~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 247 ---EGDVEAFTEAVAEY 260 (282)
T ss_dssp ---TT-CCCHHHHCHHH
T ss_pred ---hCCHHHHHHHHHHH
Confidence 57777666665444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=74.91 Aligned_cols=108 Identities=11% Similarity=-0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
..-|......|+++.|..+|.+|+...| .+..+|..++......| +++.|...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---~~~~a~~~~a~~~~~~g----------------------~~~eAl~~~~ 60 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDP---NNAELYADRAQANIKLG----------------------NFTEAVADAN 60 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHHHHHHH
Confidence 3445555566677777777777776644 34566666666666665 6677777777
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++...|.+. ..|..++......|+.+.|... |++++..+|.+..+...+..+
T Consensus 61 ~Al~l~P~~~--~a~~~lg~~~~~lg~~~eA~~~--------~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 61 KAIELDPSLA--KAYLRKGTACMKLEEYQTAKAA--------LEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHhCcCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHH
Confidence 7777766654 5566666666666766666655 777777777666655444443
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.3e-05 Score=74.61 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
...++|..|...|.+||...|.+. .+|-.-+..+.+.|..+.|..- .+.+|..+|++..+|..++..+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkD--------ce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKD--------CESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHH--------HHHHHhcChHHHHHHHHHHHHHHc
Confidence 344588888888888888888876 5666667777788888777755 888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|++.+|...|.+||.+.|...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcH
Confidence 8888888888888888888653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=63.76 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=91.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~ 329 (521)
..++...+...++..+...|.+. .+......|+++.|..+|+.++...+. .....++..++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 47788899999999999999885 345567889999999999999996532 222456666778888999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 330 KVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 330 ~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.|..+++........+.++...+..+...|+ .+.|+..|++|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999997743222356788889999999998 999999999985
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=60.97 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~ 259 (521)
+++.|...|..++...|.+. ....+..++......|+...+... |+.++..+|.+ ..+|..++..+..
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA--------FLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH--------HHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 88888888888888877642 124556667777777888777766 88888877764 5678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|+.+.|...|.+++...|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred hCChHHHHHHHHHHHHHCcCCh
Confidence 8888888888888888877653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=58.03 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=53.5
Q ss_pred HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 212 TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 212 ~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
+......|+.+.+... |++++..+|.++.+|+.++.++...|++++|...|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~--------~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAA--------FEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHH--------HHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHH--------HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4445577888888877 999999999999999999999999999999999999999999975
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00063 Score=73.07 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCchh--HHHH---HH---Hc-----CCHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDE--G---NADLIRETYERAIANIPPTK--FAEL---ES---LL-----GDMERARA 297 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~--g---~~~~Ar~~~erAl~~~P~~~--~a~l---e~---~~-----g~~e~Ar~ 297 (521)
-+++....|.+.++|-.|.+...-. + ....|+.+|++|++..|+.. ++.+ +. .. +....+..
T Consensus 326 ~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 326 QERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3444456788999998888775432 2 37799999999999999976 2221 11 11 13456666
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 298 IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 298 ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...+++..+.....+.++..++-.....|+++.|...|++++...|+...|+.++.++...|+ .++|...|++|+..
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L 482 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGD---NRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc
Confidence 677766643222234677777777777899999999999999999998899999999999999 99999999999999
Q ss_pred hccch
Q psy8681 378 LKASS 382 (521)
Q Consensus 378 ~~~~~ 382 (521)
.|..+
T Consensus 483 ~P~~p 487 (517)
T PRK10153 483 RPGEN 487 (517)
T ss_pred CCCCc
Confidence 99865
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=55.81 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVI 191 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~i 191 (521)
.|...+..+...|+++.|..+|.+++...|. ...+|..++......+ +++.|..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------------------~~~~a~~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLG----------------------KYEEALED 56 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHH----------------------HHHHHHHH
Confidence 4667777777778888888888888777542 3456666777666666 77888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC
Q psy8681 192 YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244 (521)
Q Consensus 192 y~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P 244 (521)
|+.++...|... .++..++.+....|+...+... +.+++..+|
T Consensus 57 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~ 99 (100)
T cd00189 57 YEKALELDPDNA--KAYYNLGLAYYKLGKYEEALEA--------YEKALELDP 99 (100)
T ss_pred HHHHHhCCCcch--hHHHHHHHHHHHHHhHHHHHHH--------HHHHHccCC
Confidence 888887777665 5666666666667776666655 677666655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.8e-05 Score=57.57 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG-NADLIRETYERAIANIP 278 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g-~~~~Ar~~~erAl~~~P 278 (521)
.+|..++......|+.+.+... |.+++..+|.++.+|..++..+...| ++.+|...|++|++..|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~--------~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEY--------FEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHH--------HHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5778888888888988888877 99999999999999999999999999 79999999999999887
|
... |
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.042 Score=57.98 Aligned_cols=328 Identities=15% Similarity=0.099 Sum_probs=184.1
Q ss_pred HHHH-HHHHhcCChhhhhhhcC-CCc---------H----HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 61 AWKK-AMEEKQGNKIGEEGANK-ENE---------E----EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 61 ~W~~-~~e~~~gn~~~Ar~ife-~P~---------~----e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
+..+ -..-+++.|+.|..+.+ +|. + +-|++..++|... . . +.+ +..+-...++..-+.
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~----~~~~~~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-G----LDRLDDKLLELRAQVLYRL 123 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-c----ccccchHHHHHHHHHHHHH
Confidence 3344 33345566777766665 332 1 5567777877777 6 2 345 566888889999999
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh----hhccc-cchhhHHHHHhh--hhhhhhHHHHHHHHHHHH
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR----EKYGD-RAGIEDVIVSKR--KFQYEEHERARVIYKYAL 196 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~----~~~~~-~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL 196 (521)
|++++|..+|+..++..-++ .+..+-.++...-.... ...+- ..+....+.+.. +.+.|.+..|..+++.|+
T Consensus 124 ~~ydealdiY~~L~kn~~dd-~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDD-QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred hhHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999998863221 12222222222111111 01111 111222223332 345678999999998885
Q ss_pred hcCCh-------------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH--------------
Q psy8681 197 DHIPK-------------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA-------------- 249 (521)
Q Consensus 197 ~~~P~-------------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~-------------- 249 (521)
..+-. .....+-..++-.....|..+.+..+ |...|..+|.|..+
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i--------y~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI--------YVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH--------HHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 54211 11112333334445566877766654 44444444332211
Q ss_pred ----------------------H-------------HHHHHHHHHcC---------------------------------
Q psy8681 250 ----------------------W-------------FDYLRLLEDEG--------------------------------- 261 (521)
Q Consensus 250 ----------------------W-------------~~y~~~~~~~g--------------------------------- 261 (521)
| .+.+.+.+-.+
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 0 00000000011
Q ss_pred -CHHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH--------cCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 262 -NADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI--------SQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 262 -~~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al--------~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
.+..+..++.......|... .+.+....|+...|..++.... +... .+ .+-.....+..+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P-~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LP-GTVGAIVALYYKIK 431 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Ch-hHHHHHHHHHHhcc
Confidence 12223333333333333331 4566778999999999999332 2111 11 22333344556777
Q ss_pred ChHHHHHHHHHHHhcC----C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERT----V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~----~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE 398 (521)
+.+.|..++..++... + ...+|-..+.|+...|+ .+.|.++++..++..|...+ --+.+..+|.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~~--~l~~lV~a~~--- 503 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN---EEEASSLLEELVKFNPNDTD--LLVQLVTAYA--- 503 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchHH--HHHHHHHHHH---
Confidence 8888999999988752 1 24567778999999998 99999999999999887532 3345555555
Q ss_pred HHcCCHHHHHHHHhhCc
Q psy8681 399 AQHGDDESRAKLNSKLP 415 (521)
Q Consensus 399 ~~~G~~~~~~~v~~~~p 415 (521)
.=|++.+..+.+.+|
T Consensus 504 --~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 504 --RLDPEKAESLSKKLP 518 (652)
T ss_pred --hcCHHHHHHHhhcCC
Confidence 456777777776665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0036 Score=62.31 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=106.2
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 236 YEEEVNSNP--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 236 ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
|+.||...- .+.+.-...+.++...++++.|.+.++.+-+...++. |..+....+.+..|.-+|+......
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 555565422 4677777888888999999999999999887766655 4445444557999999999987765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+. ...+....+-.....|++++|..+++.++...| ++.+.++.+.+....|. ..+.+...+.+.-...|.++
T Consensus 198 ~~--t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk--~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 198 GS--TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK--PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT---TCHHHHHHHHHCHHHTTTSH
T ss_pred CC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhCCCCh
Confidence 43 456777788888899999999999999998876 68889999888888886 13667777777777778764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00068 Score=61.72 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=74.7
Q ss_pred chhhHHH-HhhhccCCCC-C--hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 92 RDREEED-ERKDEGDRDS-D--TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-~--~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
+..++.. ...+ ...+ . ...|..++......|+++.|...|.+|+...++......+|..++......|
T Consensus 15 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g------ 86 (168)
T CHL00033 15 FTIVADILLRIL--PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG------ 86 (168)
T ss_pred cccchhhhhHhc--cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC------
Confidence 4455555 5555 4455 2 6889999999999999999999999999886643334568888888888888
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.++.|+..|++++...|... ..+...+.+..
T Consensus 87 ----------------~~~eA~~~~~~Al~~~~~~~--~~~~~la~i~~ 117 (168)
T CHL00033 87 ----------------EHTKALEYYFQALERNPFLP--QALNNMAVICH 117 (168)
T ss_pred ----------------CHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHH
Confidence 99999999999999887654 34444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.9e-05 Score=56.15 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+..+...|+++.|+.+|++++...| ++.+|..++.++...|+ ++.|+.+|++++...|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR---YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCC
Confidence 4456678888888888888888887 57788888888888887 888888888888887765
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=97.84 E-value=2e-05 Score=49.52 Aligned_cols=30 Identities=40% Similarity=0.680 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNYAQFEM 356 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~ya~~e~ 356 (521)
+++.||.+|+|.+..+|++.+|+.||.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 578999999999999999999999999985
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=61.93 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..+...|......|++..|+..|+..+..+|..+..+.+.+.++......+ +++.|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~----------------------~y~~A~ 62 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG----------------------DYEEAI 62 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 5667788888889999999999999999998865555666666666665666 999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
..|++.+...|.+... -+.. |..++.. +..|-.........+....|...
T Consensus 63 ~~~~~fi~~yP~~~~~-~~A~-------------------------Y~~g~~~----~~~~~~~~~~~~D~~~~~~A~~~ 112 (203)
T PF13525_consen 63 AAYERFIKLYPNSPKA-DYAL-------------------------YMLGLSY----YKQIPGILRSDRDQTSTRKAIEE 112 (203)
T ss_dssp HHHHHHHHH-TT-TTH-HHHH-------------------------HHHHHHH----HHHHHHHH-TT---HHHHHHHHH
T ss_pred HHHHHHHHHCCCCcch-hhHH-------------------------HHHHHHH----HHhCccchhcccChHHHHHHHHH
Confidence 9999999999986511 0111 1111100 00000000111122335567777
Q ss_pred HHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----H
Q psy8681 270 YERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH----V 345 (521)
Q Consensus 270 ~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~----~ 345 (521)
|+..+...|++.|+. .|......+-..- ..-=..-+.|+.+.|.+..|..-|+.+++..|. .
T Consensus 113 ~~~li~~yP~S~y~~---------~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~ 178 (203)
T PF13525_consen 113 FEELIKRYPNSEYAE---------EAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE 178 (203)
T ss_dssp HHHHHHH-TTSTTHH---------HHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHCcCchHHH---------HHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence 888888888776332 1111111110000 000011356677788888888888888888763 3
Q ss_pred HHHHHHHHHHHHcCC
Q psy8681 346 KVWMNYAQFEMSSGD 360 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~ 360 (521)
..+..++......|.
T Consensus 179 ~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 179 EALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCC
Confidence 455556666666665
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00029 Score=68.24 Aligned_cols=109 Identities=16% Similarity=0.032 Sum_probs=62.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 117 a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
+.=.+..++|.+|...|.+||.+.|. ++-+|.+-+..+.++| +++.|..-++.||
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg----------------------~~~~AVkDce~Al 142 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLG----------------------EYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhc----------------------chHHHHHHHHHHH
Confidence 33344455666666666666666442 4445555555555555 6666666666666
Q ss_pred hcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 197 DHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 197 ~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..+|... ..|..++......|..+.|... |.++|.++|.+...|..+-......
T Consensus 143 ~iDp~ys--kay~RLG~A~~~~gk~~~A~~a--------ykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 143 SIDPHYS--KAYGRLGLAYLALGKYEEAIEA--------YKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred hcChHHH--HHHHHHHHHHHccCcHHHHHHH--------HHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6666544 5555555555556666666544 6666666666665555554444333
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=71.24 Aligned_cols=154 Identities=10% Similarity=0.203 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+.|..||.-|..-.....-++.|+.++... +..|.-=-+-+.......+..+ .-..+..-+|.++....+.
T Consensus 35 ktRr~fE~rL~rr~~klnDf~~YI~yE~nl---eklRaKR~Kr~~v~~K~s~sD~----sipqk~~f~~~R~tnkff~-- 105 (435)
T COG5191 35 KTRRKFELRLQRREKKLNDFMRYIKYECNL---EKLRAKRVKRKKVGKKASFSDM----SIPQKKIFELYRSTNKFFN-- 105 (435)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhH---HHHHHHHHHHHHhcccccchhc----cccceeeEeeehhhhcCCC--
Confidence 445567777776555566677777776533 2222111110111000000000 0011111233344443333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHhccchhhHHHH
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQALKASSEKEERV 388 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~~~~~~~~~~~~ 388 (521)
+..+|..|+.+-...|.+.....+|..+|+.+| ++++|+..+.|+.. +++ ++.||++|.+|+...|.++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~an---i~s~Ra~f~~glR~N~~~p------ 176 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIAN---IESSRAMFLKGLRMNSRSP------ 176 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhcc---HHHHHHHHHhhhccCCCCc------
Confidence 367999999999999999999999999999998 79999998888776 455 9999999999999999886
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 389 MLLEAWKEFEAQHG 402 (521)
Q Consensus 389 ~l~~~~~~fE~~~G 402 (521)
.+|-+|..||-.|=
T Consensus 177 ~iw~eyfr~El~yi 190 (435)
T COG5191 177 RIWIEYFRMELMYI 190 (435)
T ss_pred hHHHHHHHHHHHHH
Confidence 59999999997764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00063 Score=62.23 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...+..++..+...|++++|...|++++...++.+....+|..++......| +++.|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----------------------~~~~A 91 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----------------------EHDKA 91 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 36778999999999999999999999999875532223567788888777777 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-------hhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-------AGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-------~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
..+|.+++...|... ..+..++......|.. +.+... ..+....|++++..+|.++
T Consensus 92 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~a~~~~~~A~~~-~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 92 LEYYHQALELNPKQP--SALNNIAVIYHKRGEKAEEAGDQDEAEAL-FDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHhHhhCHHHHHHH-HHHHHHHHHHHHhhCchhH
Confidence 999999999988765 5555666665555543 222221 1234455888888888874
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=55.93 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHhc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG-DEDSVSLARRVFERANQALK 379 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g-~~~~~~~AR~vferAl~~~~ 379 (521)
+.+|...+......|+++.|...|.+++...| ++.+|..++..+...| + +.+|...|++|++..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 56899999999999999999999999999998 6889999999999988 6 9999999999998876
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=70.77 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=96.0
Q ss_pred CCCC-ChhhHHHHHHHHHH--cC---ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQ--NG---FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~--~g---~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
...| +...|-.|.+-..- .+ +...|+.+|++|++..| ....+|..++....... .+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP---~~a~a~A~la~~~~~~~-~~~~~----------- 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP---DFTYAQAEKALADIVRH-SQQPL----------- 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHH-hcCCc-----------
Confidence 3345 67777777766433 22 37799999999999965 35555544333221111 01100
Q ss_pred hhhhhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 179 KFQYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
....+..+.....+++.. .|... .+|..++......|+.+.|... |++++..+| +...|..++.+
T Consensus 396 --~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~--------l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 --DEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVKGKTDEAYQA--------INKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred --cHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCC-CHHHHHHHHHH
Confidence 001345666666666553 44333 5677666666667888877766 888888888 47788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+...|+.++|...|++|+...|...
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 8888888888888888888877643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0058 Score=59.24 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTVH----VKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~~----~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
+.|+.+.|.+..|..-|+.++...|. .+....++......|. .+.|..+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHH
Confidence 45566677777777777777777652 3444445555556666 55555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=61.93 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH--HHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK--FEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~--~e~ 158 (521)
.++.|++..|+.. ++++ ..+| + ...++.++..+...|+++.|+..|++-+..+|.++..+.++...+. +..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~--~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLI--DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHH--HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3456777777777 8999 8888 4 5778888999999999999999999999999976544444433332 222
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..+ . + ......+....|...|+..+...|.+.-..--...+. ....
T Consensus 93 ~~~-~-----------~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~---------------------~l~~ 138 (203)
T PF13525_consen 93 IPG-I-----------L-RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA---------------------ELRN 138 (203)
T ss_dssp HHH-H-----------H--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH---------------------HHHH
T ss_pred Ccc-c-----------h-hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH---------------------HHHH
Confidence 111 0 0 0000112566788888888888887651100000000 0111
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|. .-=+..++++.+.|.+..|..-|+.++...|++.
T Consensus 139 ~la------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 139 RLA------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHH------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 110 1113456677777777778888888888777765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00059 Score=70.38 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
-.+..+....++++.|+.+|++.....| .++..+++.....+ +-.+|..+..
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p------ev~~~LA~v~l~~~----------------------~E~~AI~ll~ 224 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP------EVAVLLARVYLLMN----------------------EEVEAIRLLN 224 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC------cHHHHHHHHHHhcC----------------------cHHHHHHHHH
Confidence 3445555566788889999988877643 34555666665555 6678888888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
++|...|.+. .+....+.|..+.|+.+.|..+ .++++...|.+...|..++..+...|+++.|.-++..
T Consensus 225 ~aL~~~p~d~--~LL~~Qa~fLl~k~~~~lAL~i--------Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 225 EALKENPQDS--ELLNLQAEFLLSKKKYELALEI--------AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888775 7888888888888888888776 8888899999999999999999999988888765553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00069 Score=66.29 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhH
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF 282 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~ 282 (521)
..+++|+.++..+...|+.+.|+.+|++.+...|.+.+
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 35677777777777888888888888888888887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=70.56 Aligned_cols=155 Identities=11% Similarity=0.119 Sum_probs=94.9
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
..|+++.|..+ .+. .+.++-...+.++...++++.|.+.+..+-+... +..-..+..+|..+.....
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l~~g~e----- 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE-DSILTQLAEAWVNLATGGE----- 181 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHTTT-----
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhCch-----
Confidence 34555555554 432 2456666677777777888888887777655421 1111233344444443332
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.+..|..+|+...+.+|.+. .+....+......|+.+.|+.+ +++++..+|++
T Consensus 182 -----------------~~~~A~y~f~El~~~~~~t~--~~lng~A~~~l~~~~~~eAe~~--------L~~al~~~~~~ 234 (290)
T PF04733_consen 182 -----------------KYQDAFYIFEELSDKFGSTP--KLLNGLAVCHLQLGHYEEAEEL--------LEEALEKDPND 234 (290)
T ss_dssp -----------------CCCHHHHHHHHHHCCS--SH--HHHHHHHHHHHHCT-HHHHHHH--------HHHHCCC-CCH
T ss_pred -----------------hHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHhccCC
Confidence 56777778888777666554 5666777777777888888766 77788888888
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCchh
Q psy8681 247 YDAWFDYLRLLEDEGNA-DLIRETYERAIANIPPTK 281 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~-~~Ar~~~erAl~~~P~~~ 281 (521)
+++..+++.+..-.|+. +.+...+.+.-...|.+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 88887777777777765 556666666666677655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.013 Score=58.21 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
.+++...+..+...|++++|...|.+|...... .......|...+..... .+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----------------------~~~~ 91 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----------------------GDPD 91 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----------------------TTHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------------------hCHH
Confidence 355666667777777888888888888765311 00011112222221111 1455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-GNADL 265 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-g~~~~ 265 (521)
.|..+|++|+. +....|+...+- .+...++.++... |+++.
T Consensus 92 ~Ai~~~~~A~~----------------~y~~~G~~~~aA----------------------~~~~~lA~~ye~~~~d~e~ 133 (282)
T PF14938_consen 92 EAIECYEKAIE----------------IYREAGRFSQAA----------------------KCLKELAEIYEEQLGDYEK 133 (282)
T ss_dssp HHHHHHHHHHH----------------HHHHCT-HHHHH----------------------HHHHHHHHHHCCTT--HHH
T ss_pred HHHHHHHHHHH----------------HHHhcCcHHHHH----------------------HHHHHHHHHHHHHcCCHHH
Confidence 55555555553 334556544432 2334556666666 67777
Q ss_pred HHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCC-C-Cc---HHHHHHHHHHHHhcCChH
Q psy8681 266 IRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRL-D-MP---ELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~-~-~~---~~lw~~yi~~e~~~g~~~ 329 (521)
|...|++|+....... .+.+...+|+++.|..+|++....... . .. ...+...+-.....|++.
T Consensus 134 Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 134 AIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 7777777766532111 677888899999999999998764211 0 11 123333344455679999
Q ss_pred HHHHHHHHHHhcCC----CHH--HHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 330 KVRELHERLLERTV----HVK--VWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 330 ~Ar~l~eral~~~~----~~~--vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
.|+..|++....+| +.+ +-..++..... |+.+.+..|..-|.+.
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 99999999988765 333 32333333322 3434455555555544
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=97.69 E-value=2e-05 Score=49.50 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=26.2
Q ss_pred cchhhHHH-HhhhccCCCCChhhHHHHHHHHH
Q psy8681 91 ERDREEED-ERKDEGDRDSDTTYGMRELVFEE 121 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~ 121 (521)
++++||.+ +|+| .+||++..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v--~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFV--LVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHH--HhCCCchHHHHHHHhhc
Confidence 57889999 9999 99999999999999985
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=59.94 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHH
Q psy8681 147 EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 147 ~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
...+..++......| +++.|...|++++...|... ...+|..++......|+.+.+.
T Consensus 35 a~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 35 AFVYYRDGMSAQADG----------------------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred HHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566666666666 99999999999998765432 2357888888888999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.. |++++..+|.+...|..++.++...|+...+..-++.|+. .+.+|..++++++..
T Consensus 93 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~---------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 93 EY--------YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA---------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred HH--------HHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH---------------HHHHHHHHHHHHHhh
Confidence 76 9999999999999999999999998887666655555543 246677777777775
Q ss_pred CC
Q psy8681 306 PR 307 (521)
Q Consensus 306 ~~ 307 (521)
.|
T Consensus 150 ~p 151 (172)
T PRK02603 150 AP 151 (172)
T ss_pred Cc
Confidence 44
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00096 Score=57.66 Aligned_cols=111 Identities=20% Similarity=0.437 Sum_probs=80.7
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 233 KFQYEEEVNSNP---NNYDAWFDYLRLLEDE----GNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 233 r~~ye~al~~~P---~~~~~W~~y~~~~~~~----g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~ 304 (521)
+..|+..|.... +..+.|..|+....++ +.......++++++..+.++. |-
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~--------------------- 63 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYK--------------------- 63 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGT---------------------
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhc---------------------
Confidence 456888888755 4568999999999876 345667778888877654321 00
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
+++ -...+|..|+++. +.++++|..+.... .++..|+.||.++...|+ +.+|.+||+.||
T Consensus 64 nD~--RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~---~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDE--RYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN---FKKADEIYQLGI 126 (126)
T ss_dssp T-H--HHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhhC
Confidence 000 0246888888532 38999999988764 478999999999999998 999999999986
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00057 Score=66.91 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=82.9
Q ss_pred HhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
++.|+++.|+.. +.++ ..+| + +..+..+|.++...|+++.|+..|.+++..+|+++..+.++...+......|
T Consensus 154 ~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 346788899988 9999 9999 4 4789999999999999999999999999999977777888988888887777
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+.+.|+.+|+.+++..|.+.
T Consensus 232 ----------------------~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 232 ----------------------DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ----------------------CHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999875
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00056 Score=68.75 Aligned_cols=56 Identities=16% Similarity=-0.018 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++...+....+.|+..+|....+.|+++.|.-. -+..+..++.++.|+.-|+.+++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555555555554444321 12233344555555555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00024 Score=56.62 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.++.|..+|+++++..|.+.....|..++...-+.|+...|..+ +++ +..+|.+....+.++..+.+.|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~--------~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL--------LQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH--------HHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH--------HHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 488899999999999888532235666677777788888888766 666 77778888888888999999999
Q ss_pred HHHHHHHHHHH
Q psy8681 263 ADLIRETYERA 273 (521)
Q Consensus 263 ~~~Ar~~~erA 273 (521)
.++|+.+|++|
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999988875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=59.31 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLEDEG 261 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~~g 261 (521)
+..++..+...+...+.......|...+......|+.+.+... |++++...|.+ ..+|..++.++...|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~--------~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQN--------YYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 4445555555555556555556777777777778888888766 88888776653 347888888888888
Q ss_pred CHHHHHHHHHHHHHcCCch
Q psy8681 262 NADLIRETYERAIANIPPT 280 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~ 280 (521)
+.++|...|++|+...|..
T Consensus 87 ~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 87 EHTKALEYYFQALERNPFL 105 (168)
T ss_pred CHHHHHHHHHHHHHhCcCc
Confidence 8888888888888877754
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0031 Score=61.50 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHH-H--cCCHHHHHHHHHHHHcCCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELES-L--LGDMERARAIYELAISQPR 307 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~-~--~g~~e~Ar~ife~al~~~~ 307 (521)
.+.-|..||+|..-|..++..++..|+.+.|...|.+|++..|++. |++... + ......++.+|.+++..++
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 6777778888888888888888888888888888888888888766 444322 2 2355678888888888766
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 308 LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
.+.....+. ..-...+|++..|...++.+|...|-..-|...+.
T Consensus 225 ~~iral~lL--A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 225 ANIRALSLL--AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ccHHHHHHH--HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 553333332 33345788888888888888888764444544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0079 Score=58.29 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=46.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
....|+++.|+.. +.++ ..+| + ....+.++..+.+.++++.|...|++.+...|+++..+.++...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 42 KLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3445677777777 7888 8888 4 233466666777788888888888888888887655555554444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=62.19 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYE 271 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~e 271 (521)
-|..+|.+. +-|..++......|+...+... |.+++.+.|.++++|..|+..+.-+. ...+++.+|.
T Consensus 148 ~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~A--------Y~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 148 HLQQNPGDA--EGWDLLGRAYMALGRASDALLA--------YRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHhCCCCc--hhHHHHHHHHHHhcchhHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333344443 3444444444444444444433 44444444444444444444433221 1233444444
Q ss_pred HHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 272 RAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 272 rAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
+|+...|.+. ++.-....|++..|...++..+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444433 22223334444444444444444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0025 Score=65.78 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~ 329 (521)
.++.++...++++.|+.+|++..+..|... ++.+....++..+|..++..++...|.+ ..++...+.|+...++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHH
Confidence 345555667899999999999999998865 6777888899999999999999977654 678889999999999999
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy8681 330 KVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFE 372 (521)
Q Consensus 330 ~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vfe 372 (521)
.|..+.++++...| +-..|..++..+...|+ ++.|...+.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 99999999999998 57899999999999999 999886655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=56.65 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 289 LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 289 ~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
.|+++.|..+|++++...|.+....+|..++..+.+.|++++|..++++ +...+ ++.....+|..+...|. +++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 5788888999999888554321345777778888899999999999999 55544 56777778999999998 9999
Q ss_pred HHHHHHH
Q psy8681 368 RRVFERA 374 (521)
Q Consensus 368 R~vferA 374 (521)
+.+|++|
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999876
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.078 Score=53.43 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=133.6
Q ss_pred HHHHhcCChhhhhhhcC----CCcH-----------HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK----ENEE-----------EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~ 127 (521)
+.-...|+++.||+-|+ +|.. ..+.|..+.|+.+ +++- ..-|. ...|.....-.+..|+.+
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa--~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAA--EKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH--hhccCCchHHHHHHHHHHhcCChH
Confidence 66678899999999999 6765 4468889999999 9988 88884 566777777777788999
Q ss_pred HHHHHHHHHHHhc--CCcccc-HH-HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 128 GARKVYERAVEFF--GEENLD-EK-LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 128 ~Ar~vye~Al~~~--~~~~~~-~~-lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
.|.++.+...... ..+... .. +.+.---++.-. .+...|+..-..+++..|.-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld----------------------adp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD----------------------ADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHhhcCCccc
Confidence 9998888776642 100000 00 000000000000 044556666666666655543
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHH
Q psy8681 204 TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283 (521)
Q Consensus 204 ~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a 283 (521)
...+--+-. .-..|+.-..-.+ +|.+-+..|+ +++|..|... +.|+ .+..-++|+-..
T Consensus 264 Paav~AAra--lf~d~~~rKg~~i--------lE~aWK~ePH-P~ia~lY~~a--r~gd--ta~dRlkRa~~L------- 321 (531)
T COG3898 264 PAAVVAARA--LFRDGNLRKGSKI--------LETAWKAEPH-PDIALLYVRA--RSGD--TALDRLKRAKKL------- 321 (531)
T ss_pred hHHHHHHHH--HHhccchhhhhhH--------HHHHHhcCCC-hHHHHHHHHh--cCCC--cHHHHHHHHHHH-------
Confidence 222222222 2233443333333 5555555554 5566555543 2332 222222222110
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCch
Q psy8681 284 ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSS-GDED 362 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~-g~~~ 362 (521)
....+.+ ...-..-...-...|++..||.--+.+....|...+++.++..+... |+
T Consensus 322 -------------------~slk~nn--aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGD-- 378 (531)
T COG3898 322 -------------------ESLKPNN--AESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGD-- 378 (531)
T ss_pred -------------------HhcCccc--hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCc--
Confidence 0011111 11122223333356777777777777777777777777777777654 55
Q ss_pred hhHHHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERANQA 377 (521)
Q Consensus 363 ~~~~AR~vferAl~~ 377 (521)
-.++|.++-+|+..
T Consensus 379 -qg~vR~wlAqav~A 392 (531)
T COG3898 379 -QGKVRQWLAQAVKA 392 (531)
T ss_pred -hHHHHHHHHHHhcC
Confidence 67777777777754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00027 Score=53.61 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=54.2
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK 155 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~ 155 (521)
+..|+++.|..+ ++++ ..+| +..+++.++.++...|++++|+.++++++...|+ ++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKAL--QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHhc
Confidence 467899999999 9999 9999 8999999999999999999999999999998763 4555555443
|
... |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00029 Score=68.17 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=78.9
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
.|+. ..+| ++.+|..|+.+-...|.+...-.+|..++...| .+.++|+.-+.++....
T Consensus 97 ~R~t--nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP---~nvdlWI~~c~~e~~~~---------------- 155 (435)
T COG5191 97 YRST--NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP---LNVDLWIYCCAFELFEI---------------- 155 (435)
T ss_pred ehhh--hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceeeeeeccchhhhh----------------
Confidence 3444 6677 799999999999999999999999999999854 67889998887775443
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY 218 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~ 218 (521)
++++.+|.+|.++|..+|.+. .+|..|..||..+
T Consensus 156 -----ani~s~Ra~f~~glR~N~~~p--~iw~eyfr~El~y 189 (435)
T COG5191 156 -----ANIESSRAMFLKGLRMNSRSP--RIWIEYFRMELMY 189 (435)
T ss_pred -----ccHHHHHHHHHhhhccCCCCc--hHHHHHHHHHHHH
Confidence 289999999999999999887 8999999998765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0091 Score=61.77 Aligned_cols=131 Identities=9% Similarity=0.031 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 125 FVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 125 ~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
....|..+|.+|+..-+-+|.. +..|.++..+-.... -+.. .......|+.+-++|++..|.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~-g~~~--------------~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH-GKSE--------------LELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh-cCCC--------------chHHHHHHHHHHHHHHhcCCCC
Confidence 3567889999999332223333 334444444433221 0000 1126778899999999999998
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.......+++.+. .|+.+.+... |++|+..+|+...+|..++.++.-.|+.++|+..+++|+...|..
T Consensus 338 a~a~~~~g~~~~~--~~~~~~a~~~--------f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGL--SGQAKVSHIL--------FEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHHh--hcchhhHHHH--------HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 7434444444343 3446666655 999999999999999999999999999999999999999999964
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.21 Score=50.39 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHhhCchhhhhhh
Q psy8681 364 VSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH-GDDESRAKLNSKLPRRAKKRV 422 (521)
Q Consensus 364 ~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~-G~~~~~~~v~~~~p~~v~krr 422 (521)
+..||.--+.+....|. ..++.-+.++|.-. ||...++..+.+. |+--|
T Consensus 345 ~~~ARa~Aeaa~r~~pr-------es~~lLlAdIeeAetGDqg~vR~wlAqa---v~APr 394 (531)
T COG3898 345 FSAARAKAEAAAREAPR-------ESAYLLLADIEEAETGDQGKVRQWLAQA---VKAPR 394 (531)
T ss_pred hHHHHHHHHHHhhhCch-------hhHHHHHHHHHhhccCchHHHHHHHHHH---hcCCC
Confidence 66666666666665553 45666667777755 9999888887665 66544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00064 Score=51.49 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.|+++.|..+|++++...|.+. .++..++.+....|+.+.|..+ +++++..+|+++..|..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNP--EARLLLAQCYLKQGQYDEAEEL--------LERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSH--HHHHHHHHHHHHTT-HHHHHHH--------HHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCcCHHHHHHHHhc
Confidence 4599999999999999999987 8888999999999999999877 99999999999888776654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00078 Score=51.84 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.+.++.+.+..+ +++++..+|.++..|..++.++...|++..|...|+++++..|...
T Consensus 6 ~~~~~~~~A~~~--------~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 6 LQQEDYEEALEV--------LERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HhCCCHHHHHHH--------HHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 456777777766 9999999999999999999999999999999999999999998754
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0076 Score=60.92 Aligned_cols=30 Identities=30% Similarity=0.239 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
.-..-++.+.+.|++..|..-|++|+..++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~ 239 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLE 239 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhh
Confidence 344556778888999999999999999865
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00049 Score=44.68 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|+++|+.+|+++.+|+.++.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 89999999999999999999999999999886
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.53 Score=52.28 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=137.4
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.+..+++..|... .+.+ ..||+ .-.-..-+-...+.|..++|-.+++. +...+. .+......+-.+....+
T Consensus 19 ~ld~~qfkkal~~~~kll--kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~--~D~~tLq~l~~~y~d~~-- 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLL--KKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKG--TDDLTLQFLQNVYRDLG-- 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCC--CchHHHHHHHHHHHHHh--
Confidence 4556889999999 9999 99996 44444445557788999999955554 333332 24555566666777776
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
.++.|..+|++++...|.... ..++.+|+.- +++..-..+ ....|. .
T Consensus 92 --------------------~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~----~~yk~qQka----a~~LyK----~ 139 (932)
T KOG2053|consen 92 --------------------KLDEAVHLYERANQKYPSEELLYHLFMAYVRE----KSYKKQQKA----ALQLYK----N 139 (932)
T ss_pred --------------------hhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHH----h
Confidence 899999999999999998431 2344455432 221111111 001132 5
Q ss_pred CCCCHHHHHHHHHHHHHcC-C---------HHHHHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHHHHHc-
Q psy8681 243 NPNNYDAWFDYLRLLEDEG-N---------ADLIRETYERAIANI-PPTK------FAELESLLGDMERARAIYELAIS- 304 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g-~---------~~~Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife~al~- 304 (521)
.|.++-..|..+.+.++.- . ..-|...++..+..- +-.. |......+|.+++|..++..-+.
T Consensus 140 ~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~ 219 (932)
T KOG2053|consen 140 FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE 219 (932)
T ss_pred CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6776555555555554431 1 233455555555433 1111 55556678999999999966544
Q ss_pred -CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH
Q psy8681 305 -QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV 345 (521)
Q Consensus 305 -~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~ 345 (521)
.++. +..+-..-.++....+.+.+.-.+-.+++...++.
T Consensus 220 ~l~~~--~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 220 KLTSA--NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccc--chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 2222 23444566788888999999999999999887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.029 Score=50.92 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-chh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIP-PTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P-~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e 322 (521)
-...++..+...|+..+|+..|++++.-.= .+. .+......++...|...++...+-+|---++.--..|...+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 346678888899999999999999988532 222 45556678999999999999988543222233445677778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHHhc
Q psy8681 323 VGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD-EDSVSLARRVFERANQALK 379 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~-~~~~~~AR~vferAl~~~~ 379 (521)
.-.|.+..|+..|+-++...|.+..-+.|+.|+.++|. .+.....+.+++++....|
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 88999999999999999999999999999999999994 3445556677777765544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=49.62 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 321 FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.+.+.++++.|..++++++...| ++.+|..+|.++...|+ +..|+..|++++...|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR---YEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCcH
Confidence 44578888888888888888887 67888888888888888 8889999999988888764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0096 Score=50.89 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
+++..+..+...|+.++|..+|++|+...+... .....+..+...+...|++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~----------------------------~~~~a~i~lastlr~LG~~ 54 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA----------------------------DRRRALIQLASTLRNLGRY 54 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------HHHHHHHHHHHHHHHcCCH
Confidence 345555555556666666666666655432211 0123344444445555555
Q ss_pred HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 329 ~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
++|..+++.++..+| +..++..++..+...|. .++|..++-.++
T Consensus 55 deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr---~~eAl~~~l~~l 102 (120)
T PF12688_consen 55 DEALALLEEALEEFPDDELNAALRVFLALALYNLGR---PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 555555555555443 23344444444444454 555555554444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.014 Score=52.21 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=73.0
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD 291 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~ 291 (521)
+.|+.+.|+.+ |.-....+|.+++.|+.++..+...++++.|...|..|....++++ .+.....+|+
T Consensus 49 ~~Gk~~eA~~~--------F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 49 NQGRLDEAETF--------FRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HCCCHHHHHHH--------HHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 67999999877 9989999999999999999999999999999999999998766554 4677888899
Q ss_pred HHHHHHHHHHHHcCCC
Q psy8681 292 MERARAIYELAISQPR 307 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~ 307 (521)
.+.|+..|+.++..+.
T Consensus 121 ~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999988653
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.1 Score=51.84 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
+..+|+.++.|. .|++++|..+|.-+... +.....+|..++-...-.|
T Consensus 58 ~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 58 SLQLWIAHCYFH--LGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHHHHHHHh--hccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHH
Confidence 467899888775 57999999999988874 2235677877765444344
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0019 Score=44.56 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK 155 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~ 155 (521)
+.+|..++..+...|++++|+.+|+++++..| .++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P---~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP---DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CCHHHHHHhhh
Confidence 36799999999999999999999999999966 47889988774
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.035 Score=49.74 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=75.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~ 361 (521)
+.-....|+++.|..+|...+-..+.+ ...|..++......+++++|..+|..+....+ ++......+......|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~- 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK- 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-
Confidence 333457899999999999988866654 57899999999999999999999999988763 55566777888888888
Q ss_pred hhhHHHHHHHHHHHHH
Q psy8681 362 DSVSLARRVFERANQA 377 (521)
Q Consensus 362 ~~~~~AR~vferAl~~ 377 (521)
...|+..|+-++..
T Consensus 121 --~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 --AAKARQCFELVNER 134 (165)
T ss_pred --HHHHHHHHHHHHhC
Confidence 99999999999984
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.3 Score=44.28 Aligned_cols=141 Identities=21% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCc--hh------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLR-LLEDEGNADLIRETYERAIANIPP--TK------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~-~~~~~g~~~~Ar~~~erAl~~~P~--~~------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
+..++...+.+...+..... .+...|+.+.+...|.+++...|. .. ........++.+.|...+..++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 44444444443333333333 455555566666666665554331 11 1112234556666666666666643
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
+.. ....+......+...+.+..|...+..++...+. ...+...+......+. .+.+...+.+++...|.
T Consensus 198 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 198 PDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDPD 268 (291)
T ss_pred ccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Confidence 321 1234555555555666777777777777776653 4444444443334444 67777777777776664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.31 Score=44.25 Aligned_cols=218 Identities=19% Similarity=0.114 Sum_probs=152.9
Q ss_pred ccchhhHHH-HhhhccCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 90 KERDREEED-ERKDEGDRDSD---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
+.+..+... ..++ ...+. .......+......+.+..+...+..++.. ...+.....+...+.+....+
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---- 109 (291)
T COG0457 37 GELAEALELLEEAL--ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALG---- 109 (291)
T ss_pred hhHHHHHHHHHHHH--hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHh----
Confidence 455556666 6666 55553 567778888888888899999888888863 001234566777777776666
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHcCChhhHHHHHHhhHHHHHHHHHhhCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTI-HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~-~e~~~G~~~~a~~~i~~krr~~ye~al~~~P 244 (521)
.+..+..++..++...+... ..+..... .....|....+... |++++..+|
T Consensus 110 ------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~ 161 (291)
T COG0457 110 ------------------KYEEALELLEKALALDPDPD--LAEALLALGALYELGDYEEALEL--------YEKALELDP 161 (291)
T ss_pred ------------------hHHHHHHHHHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCC
Confidence 78889999999988766653 22222222 45677888777766 888888776
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch-h-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 245 ---NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-K-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 245 ---~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~-~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
............+...++...+...+.+++...|.. . .+..+...|.+..|...+..++...+. ....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 239 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEAL 239 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHH
Confidence 345566666666677888999999999999988872 2 455667778899999999999886543 12233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
..........+.++.+...+.+++...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 240 YNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 33333333777899999999999988765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.027 Score=48.08 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC---CHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN---NYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~---~~~~W~~y~~~~~~ 259 (521)
+.++|..+|++++...+.. .....+..++......|..+.+..+ ++.++...|. +..++..++..+..
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~--------L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL--------LEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 7888888888888753322 2235666666677777777777665 7777777666 55666666666677
Q ss_pred cCCHHHHHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIA 275 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~ 275 (521)
.|+.++|...+-.++.
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777766666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.059 Score=48.98 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=44.7
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHH----HHHHHHHc
Q psy8681 236 YEEEVNSNP--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERAR----AIYELAIS 304 (521)
Q Consensus 236 ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar----~ife~al~ 304 (521)
++.....+| ..++..+.|++.+...|....|+..|+.++...|.-. |+.+..++|....|+ .+++.+..
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 333334344 3566667777777777888888888888888777654 777777777655544 44444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0039 Score=48.61 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=54.4
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh---cCCcc-ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF---FGEEN-LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQ 181 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~---~~~~~-~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~ 181 (521)
|| -..++..++.++...|++++|...|++|+.. .|+.. ....++..++......|
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------------------- 60 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-------------------- 60 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------------------
Confidence 56 3678999999999999999999999999976 33222 12556667777777777
Q ss_pred hhhHHHHHHHHHHHHhc
Q psy8681 182 YEEHERARVIYKYALDH 198 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~ 198 (521)
+++.|...|+++++.
T Consensus 61 --~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 --DYEEALEYYQKALDI 75 (78)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhh
Confidence 999999999999865
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.74 Score=46.73 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------Cchh--HHHHHHHcCCHHHHHHHHHHHHc-CCCC----
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-------PPTK--FAELESLLGDMERARAIYELAIS-QPRL---- 308 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-------P~~~--~a~le~~~g~~e~Ar~ife~al~-~~~~---- 308 (521)
.......|+.++.+..+.|.++.|...+.++.... |... ++++.-..|+...|...++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34567889999999999999999999999988754 2222 67788888999999888887776 1100
Q ss_pred ---------------------------CCcHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy8681 309 ---------------------------DMPELVWKAYIDFEVGQ------GERDKVRELHERLLERTV-HVKVWMNYAQF 354 (521)
Q Consensus 309 ---------------------------~~~~~lw~~yi~~e~~~------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~ 354 (521)
.....++..++.+.... +..+.+...|..++..+| ..+.|..++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00135566666666666 889999999999999987 68899999998
Q ss_pred HHHc
Q psy8681 355 EMSS 358 (521)
Q Consensus 355 e~~~ 358 (521)
....
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.26 Score=46.83 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC----CCCCCcHHHHHH
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ----PRLDMPELVWKA 317 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~----~~~~~~~~lw~~ 317 (521)
..|.-.+++..-..++.++|.++.|-..+++|-...- .-+.+.|.++|++++.. ....+...+...
T Consensus 86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le----------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE----------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3344455555556677778888887777777654321 34567777777777652 111122345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc----C--C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH--hccchhhHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLER----T--V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA--LKASSEKEERV 388 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~----~--~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~--~~~~~~~~~~~ 388 (521)
....+.+...+++|-..|.+-... . + ..+.++..+.......+ +..|..+|+...+. +-.+.+...-.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCccccChHHHHHHH
Confidence 556666777777777666554322 2 3 34567776666665555 88888888876554 22223323334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhh
Q psy8681 389 MLLEAWKEFEAQHGDDESRAKLNSK 413 (521)
Q Consensus 389 ~l~~~~~~fE~~~G~~~~~~~v~~~ 413 (521)
.|+.+|- .||.+++.+|.+.
T Consensus 233 nLL~ayd-----~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 233 NLLTAYD-----EGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHhc-----cCCHHHHHHHHcC
Confidence 5666664 6999999998743
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=49.99 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHcC----ChhhHHHHHHhhHHHHHHHHHhhCCC---------CHHHHHH
Q psy8681 187 RARVIYKYALDHIP-KDRTAEIYKAYTIHEKKYG----DRAGIEDVIVSKRKFQYEEEVNSNPN---------NYDAWFD 252 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P-~~~~~~l~~~~~~~e~~~G----~~~~a~~~i~~krr~~ye~al~~~P~---------~~~~W~~ 252 (521)
..+..|+..|.... .+.+..+|..|+.+...+- ....+..+ +++++..... ...+|+.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~l--------Ler~~~~f~~~~~Y~nD~RylkiWi~ 74 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLEL--------LERCIRKFKDDERYKNDERYLKIWIK 74 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHH--------HHHHHHHHTTSGGGTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHH--------HHHHHHHHhhhHhhcCCHHHHHHHHH
Confidence 45667777777655 4445689999998876552 23334444 8888876443 2467887
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
|+.+.. .+..+|..+....- ....+.+|..|+.++...|++.+|.
T Consensus 75 ya~~~~------~~~~if~~l~~~~I-----------------------------G~~~A~fY~~wA~~le~~~~~~~A~ 119 (126)
T PF08311_consen 75 YADLSS------DPREIFKFLYSKGI-----------------------------GTKLALFYEEWAEFLEKRGNFKKAD 119 (126)
T ss_dssp HHTTBS------HHHHHHHHHHHHTT-----------------------------STTBHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776532 55666665443211 1124567777777777777777777
Q ss_pred HHHHHHH
Q psy8681 333 ELHERLL 339 (521)
Q Consensus 333 ~l~eral 339 (521)
++|+.+|
T Consensus 120 ~I~~~Gi 126 (126)
T PF08311_consen 120 EIYQLGI 126 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 7777664
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.023 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
..|+.||.++|+..++.+.++..+...+
T Consensus 56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 56 SKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3488889999998888888888887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0044 Score=42.68 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.+|..++..+...|+.+.+..+ |+++|..+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~--------~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERL--------LRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCcCCHHHHHHhhh
Confidence 4688899999999999999987 99999999999999999875
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.03 Score=56.72 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
.-+..+.+.|++..|...|++|+..++... .. +.+.....-. +..+ .+..+-..|+ ..+.+..|
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------~~-~~ee~~~~~~--~k~~---~~lNlA~c~l----Kl~~~~~A 276 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR------SF-DEEEQKKAEA--LKLA---CHLNLAACYL----KLKEYKEA 276 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc------cC-CHHHHHHHHH--HHHH---HhhHHHHHHH----hhhhHHHH
Confidence 445667788889999999999988654221 00 0011111100 0000 0112233333 56677777
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 332 RELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 332 r~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.....++|...| +++....-++.+...|. ++.||..|++|++..|.|
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGE---YDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCCc
Confidence 777777777664 67777777777777666 777777777777777766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=55.28 Aligned_cols=94 Identities=7% Similarity=-0.012 Sum_probs=82.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+|..|... ..+| ..+| + +....=++......|+++.|..+|..++..+|+.+..++..+.++......
T Consensus 151 ~~ksgdy~~A~~~F~~fi--~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFI--KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 5667889999999 9999 9999 4 445555688888899999999999999999998777789999999998888
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+ +.+.|+.+|+..++..|...
T Consensus 229 ~----------------------~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 229 G----------------------NTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred c----------------------CHHHHHHHHHHHHHHCCCCH
Confidence 8 99999999999999999875
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0038 Score=39.44 Aligned_cols=31 Identities=39% Similarity=0.826 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 326 GERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
|+.+.|+.+|++++..+| ++.+|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 345566666666666654 4666666666553
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.75 Score=45.98 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++.-|+.+++..+....... +..+|.++..| ..|+.+.|... |.-+...+.-+..+|..++-...-.|.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~--------Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNV--------YTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHH--------HHHHhccCCCCcccchhHHHHHHHHHH
Confidence 78889999988886544332 45789988877 46888888766 888887766678889888888777788
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+.+|..+-.+ +|.+. +-.+-.++|+..+-....+. ++... ...+-.+-+++ -...+.+|+++|.+
T Consensus 107 Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD~~---EdqLSLAsvhY--mR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQDTL---EDQLSLASVHY--MRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHH-HhhhH---HHHHhHHHHHH--HHHHHHHHHHHHHH
Confidence 8888877766 45444 34455567777665554433 32111 11222222222 34578999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 338 LLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 338 al~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.|..+|. ..+-+.+|..+.+..- ++-+-.++.--+..+|++.
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDY---ydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDY---YDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHhCCCcH
Confidence 9988764 3333334444455544 6777777777777788764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.69 Score=43.29 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+.+.-++....+.|. ++.|-.+|.-|+...--+ -.++|..+++
T Consensus 238 EtyFYL~K~~l~~G~---~~~A~~LfKLaiannVyn-fVE~RyA~~E 280 (297)
T COG4785 238 ETYFYLGKYYLSLGD---LDEATALFKLAVANNVYN-FVEHRYALLE 280 (297)
T ss_pred HHHHHHHHHHhcccc---HHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 445556666777777 999999999988654322 1244554444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.075 Score=51.35 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC---CCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN---PNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~---P~~~~~W~~y~~~~~~ 259 (521)
+|..|...|..-++..|.+. ....+.+++...-..|++.++..+ |..++... |..++..+.++..+..
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~--------f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI--------FARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH--------HHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 34444444444444444431 112233333333344444444433 44444443 4567888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|+.+.|+.+|+..++..|...
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999888754
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.72 Score=50.09 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ 350 (521)
.+...|..|+...|.++.|-+.|-.+++.+.+.-.|..
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaiklntynitwcq 1033 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQ 1033 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhh
Confidence 46667777777888888888888888887766666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.23 Score=43.50 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
+...+..-|.-..+.|++..|++.|+.....+|-.+-. ..+++.++.|. .+ +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~--~~----------------------~y~ 64 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK--QG----------------------DYE 64 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH--cc----------------------CHH
Confidence 45667777778888889999999988888887643333 44555554443 34 888
Q ss_pred HHHHHHHHHHhcCChhh
Q psy8681 187 RARVIYKYALDHIPKDR 203 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~ 203 (521)
.|+..|++-++..|.+.
T Consensus 65 ~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 65 EAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 88888888888888764
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.87 Score=43.08 Aligned_cols=176 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
+.+++|..+|.+|-....-.+ ....|...+.+..+.|+...+-.. | ...... .
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~--------Y--------------veA~~c-y 84 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT--------Y--------------VEAANC-Y 84 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH--------H--------------HHHHHH-h
Confidence 378888888888755422111 123344445555555554443322 2 222222 2
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----------HHHH-HHHcCCHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----------FAEL-ESLLGDMERARAIYELAISQPRL----DMPELVWKAYIDFE 322 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----------~a~l-e~~~g~~e~Ar~ife~al~~~~~----~~~~~lw~~yi~~e 322 (521)
+.+++.+|..++++||.+..... .+++ |..+.+++.|...|+.+-..-.. .....-...-.++-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 44578888888888887654432 4444 45668999999999999762111 11123344445666
Q ss_pred HhcCChHHHHHHHHHHHhcC-C------CHHHHH-HHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh
Q psy8681 323 VGQGERDKVRELHERLLERT-V------HVKVWM-NYAQFEMSSGDEDSVSLARRVFERANQALKASSEK 384 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~-~------~~~vwi-~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~ 384 (521)
...+.+.+|+.+|+...... . +++-++ .-+......++ .-.++..+++-.+..|.-.+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCccccc
Confidence 77899999999999987754 1 233332 23333333355 777888888888888876543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.075 Score=46.50 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=66.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHH--HHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFI--AFAKFEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~--~~a~~e~ 158 (521)
.++.|+|+.|+.. +... ..+| + ...-+.++..+...++++.|+..|++-|++.|.++.-+-++. .++.+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~--~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALD--TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHH--hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 4556788888888 8888 8888 4 455666677777889999999999999999987664433333 3334443
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
..+ .+....+. --..+....|..-|+..+...|.+.
T Consensus 98 ~~~-~~~~~~~~--------drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEG-SLQSFFRS--------DRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhh-HHhhhccc--------ccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 322 00000000 0000134566667777777777653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.5 Score=42.26 Aligned_cols=73 Identities=16% Similarity=-0.007 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|..-|.-+.+.|++++|...|+......|-.+-...+-+.++-..-..+ +++.|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~----------------------~y~~A 90 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG----------------------EYDLA 90 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc----------------------cHHHH
Confidence 36678888888888889999999998888876644434444444433333334 88888
Q ss_pred HHHHHHHHhcCChhh
Q psy8681 189 RVIYKYALDHIPKDR 203 (521)
Q Consensus 189 r~iy~~aL~~~P~~~ 203 (521)
+...++-+...|.+.
T Consensus 91 ~~~~drFi~lyP~~~ 105 (254)
T COG4105 91 LAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhCCCCC
Confidence 888888888888765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=41.49 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=114.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHH-----cCCHHHHHHHHHHHHcCCC
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL-----LGDMERARAIYELAISQPR 307 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~-----~g~~e~Ar~ife~al~~~~ 307 (521)
|..|.+++.+.|..++++.-++-++...|+++.|.++|...+...|...|+.+-.. .|.+.-|..-|..--+.+|
T Consensus 85 R~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 85 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 34599999999999999999999999999999999999999999999887776432 4788888888888777777
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH
Q psy8681 308 LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~ 386 (521)
.++.-.+|.-.+ |.+....+....+.+|+-.. +..-|=- ++.|....-. -...|+++.....++..-
T Consensus 165 ~DPfR~LWLYl~--E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS------~e~l~~~~~a~a~~n~~~-- 232 (297)
T COG4785 165 NDPFRSLWLYLN--EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKIS------EETLMERLKADATDNTSL-- 232 (297)
T ss_pred CChHHHHHHHHH--HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhcc------HHHHHHHHHhhccchHHH--
Confidence 776678887554 22333334444566777655 3344422 3333332222 234566666554443211
Q ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHhhC
Q psy8681 387 RVMLLEAWKEFEA---QHGDDESRAKLNSKL 414 (521)
Q Consensus 387 ~~~l~~~~~~fE~---~~G~~~~~~~v~~~~ 414 (521)
...+-+.|--+-+ ..|+..++..+.+..
T Consensus 233 Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 233 AEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1234455544444 458888888887554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.17 Score=52.84 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------------------------ 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------------------------ 281 (521)
|...=.+||..+|++.++|..++.- ....+.++..+|++|++......
T Consensus 187 RIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrR 264 (539)
T PF04184_consen 187 RIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRR 264 (539)
T ss_pred HHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHH
Confidence 4455788999999999998877643 23458889999999887422111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc--
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSS-- 358 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~~~-- 358 (521)
++..-.++|...+|.+.|...++..|......+....+..+...+.+.++..++.+.=... |. ...+.|...+.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk-SAti~YTaALLkaRa 343 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK-SATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc-hHHHHHHHHHHHHHh
Confidence 4555668899999999999999854432244577777888889999999999999875443 32 2233333333221
Q ss_pred -CC------------chhhHHHHHHHHHHHHHhccch
Q psy8681 359 -GD------------EDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 359 -g~------------~~~~~~AR~vferAl~~~~~~~ 382 (521)
++ ......|.+.+.||++.+|--+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 11 1123457788999999887643
|
The molecular function of this protein is uncertain. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.03 Score=57.95 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|+.++..+...|++++|...|++||+..|++......|++.+..+..+|
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG---------------------- 126 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE---------------------- 126 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC----------------------
Confidence 4457 68999999999999999999999999999997743222256999999998888
Q ss_pred hHHHHHHHHHHHHhc
Q psy8681 184 EHERARVIYKYALDH 198 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~ 198 (521)
++++|...|++|++.
T Consensus 127 r~dEAla~LrrALel 141 (453)
T PLN03098 127 EGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999986
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=3.6 Score=45.97 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=113.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..|.|..++|..+ +-.- ...| +..+...+-.++...|..++|..+|++++..+|....-..+|.+|++-..=..
T Consensus 53 l~r~gk~~ea~~~Le~~~--~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~-- 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALY--GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKK-- 128 (932)
T ss_pred HHHhcCchhHHHHHhhhc--cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH--
Confidence 7788999999977 5543 4444 56677777888888999999999999999998753222344444444221111
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHH-HHHhhHHHHHHHHHhh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED-VIVSKRKFQYEEEVNS 242 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~-~i~~krr~~ye~al~~ 242 (521)
.-..|.++|+ ..|.+. -.+|....-.....-..+.+.. +.+.-+....+..+..
T Consensus 129 --------------------qQkaa~~LyK----~~pk~~-yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~ 183 (932)
T KOG2053|consen 129 --------------------QQKAALQLYK----NFPKRA-YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK 183 (932)
T ss_pred --------------------HHHHHHHHHH----hCCccc-chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc
Confidence 2234455554 345443 2344443222222211222211 2222233345555555
Q ss_pred C-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 243 N-PN-NYDAWFDYLRLLEDEGNADLIRETYERAIAN-IPPTK------FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 243 ~-P~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~-~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
. +- +..--..|...+...|..++|.+++..-+.. .+... -..+...++.+.+.-.+..+++...+.+
T Consensus 184 ~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd---- 259 (932)
T KOG2053|consen 184 KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD---- 259 (932)
T ss_pred CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----
Confidence 4 32 2233345556666778888888888655443 22211 2345667788888888877777754322
Q ss_pred HHHHHHH
Q psy8681 314 VWKAYID 320 (521)
Q Consensus 314 lw~~yi~ 320 (521)
|..|++
T Consensus 260 -y~~~~~ 265 (932)
T KOG2053|consen 260 -YKIYTD 265 (932)
T ss_pred -hHHHHH
Confidence 666665
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.07 Score=48.37 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=61.7
Q ss_pred chhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC---C-------hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 92 RDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG---F-------VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g---~-------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
++.||+. +... ..+| +++.+..||-.+..+. + +++|..-|+.||.+.| .....+..+++....
T Consensus 7 FE~ark~aea~y--~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P---~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAY--AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP---NKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHH
Confidence 5778888 8877 8899 8999999998877653 2 4566777777777755 456677777776666
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
++...++.. -....++.|...|++|++..|.+.
T Consensus 82 ~A~l~~d~~-----------~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 82 LAFLTPDTA-----------EAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHH---HH-----------HHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHhhcCChH-----------HHHHHHHHHHHHHHHHHhcCCCcH
Confidence 652111110 011258899999999999999874
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.012 Score=37.12 Aligned_cols=31 Identities=42% Similarity=0.686 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.++.|+.+|++++..+|.+. .+|..|+.|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~--~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSV--ELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHh
Confidence 67899999999999999766 99999999875
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.04 Score=57.08 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA---WFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~---W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
.|... ..|..++..+...|+++.|... |+++|..+|++..+ |++++..+...|+.++|...|++|+.
T Consensus 71 dP~~a--~a~~NLG~AL~~lGryeEAIa~--------f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTA--EDAVNLGLSLFSKGRVKDALAQ--------FETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444 6777788778888888888876 89999999988754 88899999899999999999999888
Q ss_pred c
Q psy8681 276 N 276 (521)
Q Consensus 276 ~ 276 (521)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.4 Score=47.93 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~ 360 (521)
+.-+...|+++.|..+|..+ .+.+.-|+++.+.|.+..|-.+-+.+........+++.-+.-...+|.
T Consensus 772 adhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence 45577889999999999764 356667888889999999888877765433345566665555555554
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=44.57 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=62.6
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---------HHHHHH
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------FAELES 287 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------~a~le~ 287 (521)
..|+.+.+... |.++|...|..+.++.+-+..+.-.|+.++|..-+.+|+....+.. -+.++.
T Consensus 55 E~g~Ld~AlE~--------F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 55 EAGDLDGALEL--------FGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred hccchHHHHHH--------HHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 45777777765 9999999999999999999998888999999999999988754322 345666
Q ss_pred HcCCHHHHHHHHHHHHcC
Q psy8681 288 LLGDMERARAIYELAISQ 305 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~ 305 (521)
.+|+.+.||.-|+.|.+.
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 677777777777776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.063 Score=41.64 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C--C---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT---V--H---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~--~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.++..++.++...|++++|...|++++... + + ..++..++.+....|+ ++.|...|++|++.+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhc
Confidence 456667778889999999999999998763 2 1 4456778888888887 9999999999988753
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=44.99 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE 336 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e 336 (521)
....++...+...+++|+.......+..+.. ..=....+.-+.... ..+...++..+...|+++.|..+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-EEWVEPERERLRELY--------LDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3455677788888888887643221111000 011112222222211 2345556666777888888888888
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 337 RLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 337 ral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+++...| +-.+|..+...+...|+ ...|..+|++....+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHH
Confidence 8888887 46688888888888887 7888888887776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.72 Score=46.81 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
....|+..+++..+.|.++.|...+.++....+.. ...+.+.+.++++.-..| +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g----------------------~~~~ 202 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG----------------------EQEE 202 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC----------------------CHHH
Confidence 47899999999999999999999999998864321 124677788888887776 4455
Q ss_pred HHHHHHHHHhc-C-------------------------------ChhhHHHHHHHHHHHHHHc------CChhhHHHHHH
Q psy8681 188 ARVIYKYALDH-I-------------------------------PKDRTAEIYKAYTIHEKKY------GDRAGIEDVIV 229 (521)
Q Consensus 188 Ar~iy~~aL~~-~-------------------------------P~~~~~~l~~~~~~~e~~~------G~~~~a~~~i~ 229 (521)
|....+..+.. . .......++..++.|.... ++.+.+...
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~-- 280 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY-- 280 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH--
Confidence 55554444441 0 0111235666677776666 555555544
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
|..++..+|..+..|..++.++...
T Consensus 281 ------~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 281 ------YKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ------HHHHHHhChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.3 Score=41.93 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=75.2
Q ss_pred HHHHHHHH-hh--CCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 233 KFQYEEEV-NS--NPNNYDAWFDYLRLLEDEG----NADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 233 r~~ye~al-~~--~P~~~~~W~~y~~~~~~~g----~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
+..|+..| .. ..+-.+.|..|+....++- .-.....+++++++.+-++. + -.+
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~-------------------~-Ykn 64 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDE-------------------R-YKN 64 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhh-------------------h-hcC
Confidence 45588877 32 2234689999999988642 33445667777666432210 0 001
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
++ -...+|..|+++. +..+++|.-+.... .+...|..||.++...|+ +..|.+||+.|
T Consensus 65 D~--RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~---~~~A~~iy~~G 125 (125)
T smart00777 65 DP--RYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGR---YKKADEVYQLG 125 (125)
T ss_pred CH--HHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHcc
Confidence 11 1257899988652 45788999888765 468899999999999998 99999999864
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.031 Score=35.61 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
+.+|+.++..+...|++++|+..|++++...|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3679999999999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.6 Score=42.84 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=126.8
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
++-.+|+.|+.+ .-.. ...| +-.....++..+-...++..|..+|++.-...|... .-.++. ++-.-..+ .+
T Consensus 21 I~d~ry~DaI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qYrlY~--AQSLY~A~-i~ 94 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QYRLYQ--AQSLYKAC-IY 94 (459)
T ss_pred HHHhhHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHH--HHHHHHhc-cc
Confidence 445667777777 6666 7777 555556666666666678888888888777765210 011111 11000000 11
Q ss_pred cccchh----------hHHHH---HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 165 GDRAGI----------EDVIV---SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 165 ~~~~~~----------~~~~l---~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
.+++.+ ...-+ ....++.+++..+|.+.++ .|...........+.+.-+-|+.+.+..-
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqk---- 166 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQK---- 166 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHH----
Confidence 111111 00000 0012333455555554443 44322223333344444456666666544
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCchh--------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE----TYERAIANIPPTK-------------------------- 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~----~~erAl~~~P~~~-------------------------- 281 (521)
|+.++...-..+-+-...+-.+.+.++.+.|.+ +.+|.++..|.-.
T Consensus 167 ----FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 167 ----FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred ----HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888888777777666677777777777776654 4556666666532
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCC---C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLD---M-PELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWMNYA 352 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~---~-~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi~ya 352 (521)
-+.+|.+.|+++.|+..+.. .||.. . +..+.+.-+ ---.+++.....-+.-+|...|.| +.+.++.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 24457788888888876543 33321 1 222332221 111233444444455566667753 3555544
Q ss_pred HHHHH
Q psy8681 353 QFEMS 357 (521)
Q Consensus 353 ~~e~~ 357 (521)
.++.+
T Consensus 318 llyCK 322 (459)
T KOG4340|consen 318 LLYCK 322 (459)
T ss_pred HHHhh
Confidence 44444
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.1 Score=43.32 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.+..|--||+..-+..|... .+....+......|+++.|+.+ ++.+|..+|+++++..+++.+-...|.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~--~llnG~Av~~l~~~~~eeAe~l--------L~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTP--LLLNGQAVCHLQLGRYEEAESL--------LEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcccCCCh--HHHccHHHHHHHhcCHHHHHHH--------HHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 356667777777666544443 4555555555566777777766 777777777777777777766666665
Q ss_pred HHHHHH-HHHHHHHcCCchh
Q psy8681 263 ADLIRE-TYERAIANIPPTK 281 (521)
Q Consensus 263 ~~~Ar~-~~erAl~~~P~~~ 281 (521)
..++.. ...+.....|.+.
T Consensus 257 d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 257 DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred ChHHHHHHHHHHHhcCCcch
Confidence 544432 3333333445444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.4 Score=45.36 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=96.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C---------chh--------------------HH
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-----P---------PTK--------------------FA 283 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-----P---------~~~--------------------~a 283 (521)
..|..+|.+.++.+.+...+...|+...|.++.+||+-.+ | ... |+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3457799999999999999999999999888888886421 1 111 45
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcC--C----CHHHHHHHHHHH
Q psy8681 284 ELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDF-EVGQGERDKVRELHERLLERT--V----HVKVWMNYAQFE 355 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~-e~~~g~~~~Ar~l~eral~~~--~----~~~vwi~ya~~e 355 (521)
....+.|.+..|.++....+..+|. |+. --.-+|++ -.+.++++--..+++.....+ . -|.+-.+.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 5566889999999999999997665 432 22234554 346788888888888766521 1 122333333333
Q ss_pred HHcCC------------chhhHHHHHHHHHHHHHhcc
Q psy8681 356 MSSGD------------EDSVSLARRVFERANQALKA 380 (521)
Q Consensus 356 ~~~g~------------~~~~~~AR~vferAl~~~~~ 380 (521)
...++ ..+.+.|+..+.+|+..+|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33333 12348999999999999995
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.7 Score=42.57 Aligned_cols=217 Identities=17% Similarity=0.087 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|+.+...-.+..|.+...-....|.-+ ...++..+-+. |++.-...|.....-+-++..+.+.+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY--~~Q~f~~AA~C--------YeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYY--RLQEFALAAEC--------YEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 6777777777777777765432222222111 11223344444 8888888888777777777777777877
Q ss_pred HHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
..|..+......+ |.-. -+.+..+.|++..++.+.+..-.... ......-+=+..+.|+++.|.+-|+.
T Consensus 95 ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~----Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE----ADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc----cchhccchheeeccccHHHHHHHHHH
Confidence 7777766554332 2110 12223355777777777766442211 11222223334467888888888888
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCchhhHHHH----HHHHHHHHHhccchh----------------hHHHHHHHHHH--
Q psy8681 338 LLERTV-HVKVWMNYAQFEMSSGDEDSVSLAR----RVFERANQALKASSE----------------KEERVMLLEAW-- 394 (521)
Q Consensus 338 al~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR----~vferAl~~~~~~~~----------------~~~~~~l~~~~-- 394 (521)
+++... .+-+-.+.+....+.++ .+.|. .|.+|++...|.-+. +-+-..|.+++
T Consensus 170 AlqvsGyqpllAYniALaHy~~~q---yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQ---YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhh---HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 888764 34444555544444444 55554 456677666655321 11222344443
Q ss_pred -HHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 395 -KEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 395 -~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
..+|-+.||.+.++..+--||-+-
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcc
Confidence 345778899999998888888544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.54 Score=41.30 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+...++......|+.+.+... +++++..+|.+..+|..++..+...|+...|..+|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~--------~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRL--------LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH--------HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344445555677888877766 8999999999999999999999999999999999888644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.72 Score=44.46 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred HHHHHhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYL-RLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~-~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
++..+...-.+-.+|...+ ..+...|++++|..+..+.... -... -..+..++..++-|+...+++.+...-..-..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 6666665555555665554 4567788999999888873221 1000 12334466778888888888877543211134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+-.+|+.+-...+.+..|--+|+.+-.++ |.+.+-...+......++ +++|-.+++.|+...++.+
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCCCH
Confidence 77788888888888999999999999976 678888889999999998 9999999999999877654
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.2 Score=46.19 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHH---HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTA---EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~---~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
..|.++.|..-|..||..+|..... .+|..-+....+.+..+.+..- .-++|.++|.+..+...-+.++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d--------csKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED--------CSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH--------HHhhHhcCchhHHHHHHHHHHH
Confidence 3358999999999999999875321 2333223233334444444433 6677777887777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCc
Q psy8681 258 EDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+...++.|..-|.+.+...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 7777777888778777777775
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.47 Score=40.76 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh-CCCC---HHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-NPNN---YDAWFDYLRL 256 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~-~P~~---~~~W~~y~~~ 256 (521)
..|+++.|...|.++|..+|... +.|+.-++..+-.|+.+.+.+- ++++++. .|.. -.++..-+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdD--------Ln~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDD--------LNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred hccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHH--------HHHHHHhcCccchHHHHHHHHHHHH
Confidence 44699999999999999999987 7899989988899999888766 8999987 4443 3466677778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC
Q psy8681 257 LEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P 278 (521)
+...|+.+.||.-|++|-..-.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 8889999999999999877543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.3 Score=39.86 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
.+..|..=+....+.|+.++|...|+......|.+. .+....+.|+++.|+...++-+...|.+. ..-|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-ChhHHH
Confidence 467788888888999999999999999999999876 33445678999999999999999665542 234555
Q ss_pred HHHHHHhc-------CC---hHHHHHHHHHHHhcCCC------HHHH------------HHHHHHHHHcCCchhhHHHHH
Q psy8681 318 YIDFEVGQ-------GE---RDKVRELHERLLERTVH------VKVW------------MNYAQFEMSSGDEDSVSLARR 369 (521)
Q Consensus 318 yi~~e~~~-------g~---~~~Ar~l~eral~~~~~------~~vw------------i~ya~~e~~~g~~~~~~~AR~ 369 (521)
|+..+... .+ ...|..-|+..+..+|+ +..- +..+.|+...|. ...|..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~n 188 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAIN 188 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHH
Confidence 55544332 22 34556667788888763 2211 224455666676 899999
Q ss_pred HHHHHHHHhccchhhH-HHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 370 VFERANQALKASSEKE-ERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 370 vferAl~~~~~~~~~~-~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
-|+..++.+++....+ .-..|.++|. ..|-.+.++++.+
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~----~lgl~~~a~~~~~ 228 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYY----ALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHH----HhCChHHHHHHHH
Confidence 9999999988764432 3334445555 4677666666543
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.7 Score=44.40 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHcC----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------CHHHHHHHHHH
Q psy8681 286 ESLLGDMERARAIYELAISQ----PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-------HVKVWMNYAQF 354 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~----~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-------~~~vwi~ya~~ 354 (521)
+.-+|+++.|...|.+++.. .........-.++++.+.-..++.+|+..+.+-|.+.. ....+.+++..
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44456666666666555431 11111122233334444455566666666666665531 24445555555
Q ss_pred HHHcCCchhhHHHHHHHHHHHHH
Q psy8681 355 EMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 355 e~~~g~~~~~~~AR~vferAl~~ 377 (521)
....|. .++|....+.++..
T Consensus 325 ~~alg~---h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 325 FNALGE---HRKALYFAELHLRS 344 (639)
T ss_pred HHhhhh---HHHHHHHHHHHHHH
Confidence 555555 66666666655554
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.32 Score=41.77 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=75.5
Q ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcC---------C-CHHHHHHHHHHHHHc
Q psy8681 294 RARAIYELAI-SQPRLDMPELVWKAYIDFEVGQ----GERDKVRELHERLLERT---------V-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 294 ~Ar~ife~al-~~~~~~~~~~lw~~yi~~e~~~----g~~~~Ar~l~eral~~~---------~-~~~vwi~ya~~e~~~ 358 (521)
.-+..|+..| .....+.|..+|..||...... |.-+.-..++++++..+ | ..++|+.|+.+.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3466777777 3333334678999999985542 34456778889998864 1 378999999864
Q ss_pred CCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 359 GDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
+ ..+.+|...... +.......++++|..+-...|+...+..|.+
T Consensus 80 ~------dp~~if~~L~~~----~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 D------EPRELFQFLYSK----GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred C------CHHHHHHHHHHC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 256777766543 2234567899999999999999999998875
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.06 Score=34.40 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
+.+|...+..+...|+++.|...|++|++..|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 368999999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=94.81 E-value=7.8 Score=48.02 Aligned_cols=256 Identities=12% Similarity=0.102 Sum_probs=155.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
.+.|+.+|++....|.++.|....-.|.+.. -+.+....|++....| +...|.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----~~~i~~E~AK~lW~~g----------------------d~~~Al 1722 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-----LPEIVLERAKLLWQTG----------------------DELNAL 1722 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----cchHHHHHHHHHHhhc----------------------cHHHHH
Confidence 7899999999999999999999998888763 3678999999999988 888999
Q ss_pred HHHHHHHhc-CC----------hhhHHHHH----HHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 190 VIYKYALDH-IP----------KDRTAEIY----KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 190 ~iy~~aL~~-~P----------~~~~~~l~----~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
.+.+..+.. .| ......++ ..+..+....|+.+. .++ ...|..++...|...+-++.++
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s-~~i-----lk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES-KDI-----LKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH-HHH-----HHHHHHHHHHcccccCceeeHH
Confidence 999999855 22 22222333 344556666676433 222 2559999999996555554444
Q ss_pred HHHH------------HcCCHHH---HHHHHHHHHHcCCchh----------HHHH------HHHcCCHH-------HHH
Q psy8681 255 RLLE------------DEGNADL---IRETYERAIANIPPTK----------FAEL------ESLLGDME-------RAR 296 (521)
Q Consensus 255 ~~~~------------~~g~~~~---Ar~~~erAl~~~P~~~----------~a~l------e~~~g~~e-------~Ar 296 (521)
.++. ++|++.. +..-|.+|+...-... |..+ ....|+-+ .--
T Consensus 1797 ~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in 1876 (2382)
T KOG0890|consen 1797 KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLIN 1876 (2382)
T ss_pred HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHH
Confidence 3332 3455555 4445567776433322 1121 11222222 222
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcC--ChHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQG--ERDKV---RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g--~~~~A---r~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
+..+.++...| +...+.+|-++..+.. +-+-+ ..+.-..+..+|+--+|+..+.+-++... ...++..|+
T Consensus 1877 ~~i~~~~~~lp---~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~--R~~R~keIL 1951 (2382)
T KOG0890|consen 1877 SLIEEALEHLP---TYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPS--RVERCKEIL 1951 (2382)
T ss_pred HHHHHHHHhCc---chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHH--HHHHHHHHH
Confidence 33444444332 2345566666655532 22323 33344555567999999999987766532 488899999
Q ss_pred HHHHHHhccchh-hHHHHHHHHHHHHHHHHcCC
Q psy8681 372 ERANQALKASSE-KEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 372 erAl~~~~~~~~-~~~~~~l~~~~~~fE~~~G~ 403 (521)
.++...-++... ..+-..+-+.+..+-..-++
T Consensus 1952 ~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~ 1984 (2382)
T KOG0890|consen 1952 TKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVN 1984 (2382)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 988776655321 11233444555544433333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.078 Score=33.67 Aligned_cols=33 Identities=18% Similarity=-0.063 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
+..|..+|..+...|++++|+..|++++...|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367999999999999999999999999999763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.3 Score=39.91 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=90.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 115 RELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 115 ~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.-+.-....|++..|...|..++...|. +..+-..|+......| ..+.|..++..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g----------------------~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAG----------------------DVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcC----------------------ChHHHHHHHHh
Confidence 3333445678999999999999998653 4567778888887777 88888877765
Q ss_pred HHhcCChhhHHHHHHH---HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKA---YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYE 271 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~---~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~e 271 (521)
.|.+....-|.. -+.|..+..+...... +++.+..+|.|.++-+.++..+...|+.+.|.+.+-
T Consensus 194 ----lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~---------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 194 ----LPLQAQDKAAHGLQAQIELLEQAAATPEIQD---------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred ----CcccchhhHHHHHHHHHHHHHHHhcCCCHHH---------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555443344444 4556666655554433 888899999999999999999999999988877665
Q ss_pred HHHHc
Q psy8681 272 RAIAN 276 (521)
Q Consensus 272 rAl~~ 276 (521)
-.+..
T Consensus 261 ~~l~~ 265 (304)
T COG3118 261 ALLRR 265 (304)
T ss_pred HHHHh
Confidence 54443
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.86 Score=42.11 Aligned_cols=106 Identities=18% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
...-++-....|+++.|..-|..||...|.-+.. .-+|.+-+.....++ ..+.|+.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~----------------------k~e~aI~ 155 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR----------------------KWESAIE 155 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh----------------------hHHHHHH
Confidence 3344555567789999999999999998743221 233333344444444 7888899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
-+-+||++.|.... ....-+.++.+...++.+..- |.+.+..+|..-.+.
T Consensus 156 dcsKaiel~pty~k--Al~RRAeayek~ek~eealeD--------yKki~E~dPs~~ear 205 (271)
T KOG4234|consen 156 DCSKAIELNPTYEK--ALERRAEAYEKMEKYEEALED--------YKKILESDPSRREAR 205 (271)
T ss_pred HHHhhHhcCchhHH--HHHHHHHHHHhhhhHHHHHHH--------HHHHHHhCcchHHHH
Confidence 99999999997652 222222222233334444433 777777777654443
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=94.21 E-value=2 Score=45.76 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=97.0
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCchh--------------------HHHHHHHcC
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN---------IPPTK--------------------FAELESLLG 290 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~---------~P~~~--------------------~a~le~~~g 290 (521)
|..+|.+.+..++.+.+...+|+.+-+..+.+|+|=. .|.+. |.....+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3457999999999999999999887777777776542 12221 233345679
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHcCCchhh
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDF-EVGQGERDKVRELHERL-----LERTVHVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e~~~g~~~~Ar~l~era-----l~~~~~~~vwi~ya~~e~~~g~~~~~ 364 (521)
....|.......++..|...+ .....+|++ -.+..+|.=.+.+++.. +...|+-..=+.+|.|+.....+...
T Consensus 357 C~rTA~E~cKlllsLdp~eDP-l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~r 435 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDP-LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDR 435 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhH
Confidence 999999998888886655212 233445554 34667888888888766 22235555556678888776654467
Q ss_pred HHHHHHHHHHHHHhc
Q psy8681 365 SLARRVFERANQALK 379 (521)
Q Consensus 365 ~~AR~vferAl~~~~ 379 (521)
..|+..+.+|+.++|
T Consensus 436 qsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 436 QSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHhCc
Confidence 889999999999998
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.059 Score=34.80 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=28.2
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
+++| ..+| ++..|..+|.++...|++++|++
T Consensus 3 ~kAi--e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAI--ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHH--HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5889 9999 79999999999999999999863
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.48 Score=47.13 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
..-|+-+.++|.+++|+.+|.+++...|- ++-++.+-+..+.+++ .+..|..-+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K----------------------~FA~AE~DC~ 155 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQK----------------------SFAQAEEDCE 155 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHH----------------------HHHHHHHhHH
Confidence 44566677788999999999999998663 3445555555555555 5666666666
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
.|+.++-.-. ..|..-+..-...|+...|. ..|+.+|.+.|.+..+--.|+.+
T Consensus 156 ~AiaLd~~Y~--KAYSRR~~AR~~Lg~~~EAK--------kD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 156 AAIALDKLYV--KAYSRRMQARESLGNNMEAK--------KDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhHHHH--HHHHHHHHHHHHHhhHHHHH--------HhHHHHHhhCcccHHHHHHHHHh
Confidence 6665422111 22222223333445444444 34888888888877776666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.19 Score=31.94 Aligned_cols=32 Identities=22% Similarity=-0.056 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
+.+|...|..+...|+++.|...|++|+++.|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 36899999999999999999999999999865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.46 Score=47.27 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.++|.|++|+.- .+++ ...| ++.+...-+..|.+...+..|..-...|+.+.. .....|..-+..-..+|
T Consensus 107 yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---~Y~KAYSRR~~AR~~Lg-- 179 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---LYVKAYSRRMQARESLG-- 179 (536)
T ss_pred hhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHHHHHHHHHHHHh--
Confidence 6788999999999 9999 9999 899999999999999999989888888887621 12233333333333344
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTI 213 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~ 213 (521)
.+.+|..-|+++|.+.|.+. +|-..|..
T Consensus 180 --------------------~~~EAKkD~E~vL~LEP~~~--ELkK~~a~ 207 (536)
T KOG4648|consen 180 --------------------NNMEAKKDCETVLALEPKNI--ELKKSLAR 207 (536)
T ss_pred --------------------hHHHHHHhHHHHHhhCcccH--HHHHHHHH
Confidence 88999999999999999876 56555543
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=21 Score=40.89 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=44.3
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
..+++++|-.. +|+- .+.+|..+++.-.+.|.+.+|..-|-+| +++.-|....+...+.|
T Consensus 1087 ~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcC
Confidence 35677777777 7654 4678999999999999999999888776 34556666666666555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.59 E-value=4.2 Score=42.80 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=97.5
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
+..+...-+++ .+++ .+.| ....|+.++.= ....+.+|..+|.+|++.-.............+.+..... .
T Consensus 180 RERnp~aRIkaA~eAL--ei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~---~ 252 (539)
T PF04184_consen 180 RERNPQARIKAAKEAL--EINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH---R 252 (539)
T ss_pred hcCCHHHHHHHHHHHH--HhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh---c
Confidence 44566677777 9999 9999 67888877643 3457899999999999862100000000011111100000 0
Q ss_pred ccchhhHHH----HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 166 DRAGIEDVI----VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 166 ~~~~~~~~~----l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
+.. -...| ++...-..|+..+|.+.|+..++.+|......+...++...-..+....++.++ ..|+..
T Consensus 253 Rdt-~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL-----~kYdDi-- 324 (539)
T PF04184_consen 253 RDT-NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL-----AKYDDI-- 324 (539)
T ss_pred ccc-chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH-----HHhccc--
Confidence 000 00011 122223446999999999999988887544466777776666666666666541 113210
Q ss_pred hCCCCHHHHHHHHHHHHH---cCC---------------HHHHHHHHHHHHHcCCchh
Q psy8681 242 SNPNNYDAWFDYLRLLED---EGN---------------ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~---~g~---------------~~~Ar~~~erAl~~~P~~~ 281 (521)
.-|.+ +.+.|...+.+ .++ .-.|.+...||++.+|...
T Consensus 325 ~lpkS--Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 325 SLPKS--ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred cCCch--HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 01333 33334444332 111 1236688999999888765
|
The molecular function of this protein is uncertain. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.22 Score=31.19 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
++++.++..+...|+.++|...|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356778888888999999999999999999874
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.51 Score=44.74 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..|..|...|-+||...|... ..|..-+.-..+..+.+-+... -.+++...|+.....+.++.....+..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~--~Y~tnralchlk~~~~~~v~~d--------crralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVA--SYYTNRALCHLKLKHWEPVEED--------CRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcc--hhhhhHHHHHHHhhhhhhhhhh--------HHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 467888888888888888765 4554433322234444444433 778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHc
Q psy8681 263 ADLIRETYERAIAN 276 (521)
Q Consensus 263 ~~~Ar~~~erAl~~ 276 (521)
++.|+.+++||..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.28 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
.|..++.++.+.|++++|..+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.5 Score=39.78 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=94.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHHhcCC
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWK---AYIDFEVGQGE 327 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~---~yi~~e~~~g~ 327 (521)
-....|+...|..+|..++...|... |++.+...|+.+.|..++...-... ...-|. +.|.+..+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHHHHHHHHHHhc
Confidence 34567788888899999988888764 7788888899999998887643322 122333 35677777777
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q psy8681 328 RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWK 395 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~ 395 (521)
......+-.++-....++..-+.++..+...|+ .+.|-..+--.+.......+..-|..+++.|-
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 666666555554444489999999999999888 88888777766666544444566777777666
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.27 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+|+.++.++...|+.+.|...|+++++..|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998773
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.09 E-value=12 Score=40.08 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=101.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHH------HHHHHHH----
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWF------DYLRLLE---- 258 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~------~y~~~~~---- 258 (521)
-+|.-+|..+|+.. ...+.+.-=.||++..... +.++.... -+.+-+=+ ..+....
T Consensus 178 G~f~L~lSlLPp~~-----~kll~~vGF~gdR~~GL~~--------L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~ 244 (468)
T PF10300_consen 178 GLFNLVLSLLPPKV-----LKLLSFVGFSGDRELGLRL--------LWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG 244 (468)
T ss_pred HHHHHHHHhCCHHH-----HHHHhhcCcCCcHHHHHHH--------HHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc
Confidence 36777788888753 2222222223666655544 45554421 12222211 1111111
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC-CC-CcHHHHHHHHHHHHhcCChHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR-LD-MPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~-~~-~~~~lw~~yi~~e~~~g~~~~A 331 (521)
...+.+.|..+++......|++. -+.++...|+++.|...|+.++.... .. .+...+-.++-...-.+++++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 23467889999999999999987 47888899999999999999886221 10 0111111122224457999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH--HHHHcCCc----hhhHHHHHHHHHHHHH
Q psy8681 332 RELHERLLERTVHVKVWMNYAQ--FEMSSGDE----DSVSLARRVFERANQA 377 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~--~e~~~g~~----~~~~~AR~vferAl~~ 377 (521)
...|.++++...-.+.+..|.. ++...+.. ...++|...|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999998765555555443 34445551 1124555555544433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=91.94 E-value=5.6 Score=38.49 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|.+++..+|.++.+-..-+-.++-.|+...|.+..+.++...|.
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 55566666666555555555555555666666666666666654
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.2 Score=40.57 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc---CCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS---QPR 307 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~---~~~ 307 (521)
|-++|..+|..+..|.+-+..+++..+++.+..-..+|++..|+.. .+........++.|...+.+|.. ..+
T Consensus 33 y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 33 YSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999976 34445566788999999999854 223
Q ss_pred CCCcHHHHHHHHHHH
Q psy8681 308 LDMPELVWKAYIDFE 322 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e 322 (521)
..+...+|..+...-
T Consensus 113 ~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 113 FTFGDDIPKALRDAK 127 (284)
T ss_pred CCCcchHHHHHHHHH
Confidence 334456888776553
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=91.62 E-value=13 Score=35.65 Aligned_cols=203 Identities=12% Similarity=0.052 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..+..-+..+...+++++|...+.+|++-.. .+..+|.+--.+| +.+ ... -....+.++..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrslfhAAKayE-qaa-mLa--------------ke~~klsEvvd 92 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSLFHAAKAYE-QAA-MLA--------------KELSKLSEVVD 92 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccHHHHHHHHH-HHH-HHH--------------HHHHHhHHHHH
Confidence 4455555555566788888888888886532 1233333322222 111 000 00013444444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+|++| ..++..+|..+.+-.. ++++-. ...+.+++.|..+|
T Consensus 93 l~eKA----------------s~lY~E~GspdtAAma--------leKAak---------------~lenv~Pd~AlqlY 133 (308)
T KOG1585|consen 93 LYEKA----------------SELYVECGSPDTAAMA--------LEKAAK---------------ALENVKPDDALQLY 133 (308)
T ss_pred HHHHH----------------HHHHHHhCCcchHHHH--------HHHHHH---------------HhhcCCHHHHHHHH
Confidence 44444 4445577877766543 444432 23455678888888
Q ss_pred HHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHc----CCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 271 ERAIANIPPTK-----------FAELESLLGDMERARAIYELAIS----QPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 271 erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~----~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
+|++..+-.+. .+.+...+..++.|-..|.+-.. .......-..+.+.|-.+....++..|..+|
T Consensus 134 qralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 134 QRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 88877654433 22334444555555444444222 1111112233444444444556888888888
Q ss_pred HHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 336 ERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 336 eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
....++.. ...+.-.+..++.. |+ ++.+..|+....
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ayd~-gD---~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAYDE-GD---IEEIKKVLSSPT 254 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHhcc-CC---HHHHHHHHcChH
Confidence 88776531 23344444443322 33 666666655443
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=90.90 E-value=11 Score=40.50 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHH
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~ 366 (521)
..|+...|.+.+..|+...|.... .-...++++....|-.-.|-.++..+|.+.. .+-.++..+.......+ ++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~---i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN---ISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh---hHH
Confidence 356777777777777664433211 1122344555566777777777777777653 35566777777766666 999
Q ss_pred HHHHHHHHHHHhccchhhHHH
Q psy8681 367 ARRVFERANQALKASSEKEER 387 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~ 387 (521)
|.+.|..|+...|++...++.
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHH
Confidence 999999999998888654433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.75 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.+|...+..+...|+ ++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~---~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD---YEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 466677777777776 7777777777777665
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.40 E-value=26 Score=37.47 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---hh------HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP---TK------FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~---~~------~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
..+......|++.-.-+.-++++...|+++.|...|++|+..-.. -. ++-....++++++|...|.+.++.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 388888899998888888999999999999999999999853221 11 344456789999999999999986
Q ss_pred CCCCCcHHHHHHHHH--HHHhcCCh-------HHHHHHHHHHHh
Q psy8681 306 PRLDMPELVWKAYID--FEVGQGER-------DKVRELHERLLE 340 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~--~e~~~g~~-------~~Ar~l~eral~ 340 (521)
..+. ..+..|+. .+...|+. ++|..+|.++-.
T Consensus 335 s~WS---ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 335 SKWS---KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred cccH---HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6542 45555554 35556777 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4318|consensus | Back alignment and domain information |
|---|
Probab=90.30 E-value=37 Score=38.50 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=69.3
Q ss_pred HHHhcCChhhhhhhcCCCc-------H------------------------------HHhcccchhhHHH-HhhhccCCC
Q psy8681 66 MEEKQGNKIGEEGANKENE-------E------------------------------EERDKERDREEED-ERKDEGDRD 107 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife~P~-------~------------------------------e~r~g~~e~Ar~~-eral~~~~~ 107 (521)
++...|++..|+.+.+-|. + +.+.|++++|-.+ .+. .+.
T Consensus 660 ~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~---QV~ 736 (1088)
T KOG4318|consen 660 KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKD---QVS 736 (1088)
T ss_pred HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhC---cCC
Confidence 4678888888888888221 1 4455666666666 554 345
Q ss_pred CChhhHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 108 SDTTYGMRELVFEEQNG---FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g---~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
|+...-..++.+..+.. ++.++...-+++-...+..+.+..-+..++.+..+.+ .
T Consensus 737 k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~----------------------q 794 (1088)
T KOG4318|consen 737 KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE----------------------Q 794 (1088)
T ss_pred cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH----------------------H
Confidence 66666666666665543 4556666666666655444444555666666665544 5
Q ss_pred HHHHHHHHHHHHhcCChh
Q psy8681 185 HERARVIYKYALDHIPKD 202 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~ 202 (521)
.+.|.++|+++-+..|..
T Consensus 795 kkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 795 KKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 567778887776665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.61 Score=30.32 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+|..++.++.+.|++++|..+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888654
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=90.10 E-value=5.4 Score=39.89 Aligned_cols=157 Identities=12% Similarity=-0.034 Sum_probs=90.8
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF-FGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~-~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.|++.+|-.. ++.+ ..+| +.-.|..--..+.-.|+...-+..+++.+-. .++-|...-+.-.|+--...+|
T Consensus 116 ~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g---- 189 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG---- 189 (491)
T ss_pred cccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc----
Confidence 4667777777 8888 8888 6677777777777778888888888887765 2222222223333333344455
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
-++.|...-++||+++|.+. -...+......-.|........ +.+-...+...-...
T Consensus 190 ------------------~y~dAEk~A~ralqiN~~D~--Wa~Ha~aHVlem~~r~Keg~eF-M~~ted~Wr~s~mla-- 246 (491)
T KOG2610|consen 190 ------------------IYDDAEKQADRALQINRFDC--WASHAKAHVLEMNGRHKEGKEF-MYKTEDDWRQSWMLA-- 246 (491)
T ss_pred ------------------cchhHHHHHHhhccCCCcch--HHHHHHHHHHHhcchhhhHHHH-HHhcccchhhhhHHH--
Confidence 88999999999999998753 2223333444444443332221 000000011111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
..-|+-.+-++...+.++.|..+|.+-+-
T Consensus 247 -sHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 247 -SHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred -hhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 22345556666667888999999988553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.64 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=28.5
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q psy8681 106 RDSDTTYGMRELVFEEQNGFVSGARKVYERA 136 (521)
Q Consensus 106 ~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~A 136 (521)
..|+..+|..++..+.+.|++++|.++|+++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4689999999999999999999999999864
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.9 Score=33.69 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.++..+..+|.+.++.+.++..+...|+++.|.+.+-..+...|..
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3889999999999999999999999999999999999999887753
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.69 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+|..++..+...++.+.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 56888888888899999999999999887774
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.85 E-value=31 Score=35.54 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhcCChhh---HHHHHHHHHHHHHH---cCChhhHHHHHHhhHHHHHHH-HHhhCCCCHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR---TAEIYKAYTIHEKK---YGDRAGIEDVIVSKRKFQYEE-EVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~---~~~l~~~~~~~e~~---~G~~~~a~~~i~~krr~~ye~-al~~~P~~~~~W~~y~~~ 256 (521)
+++.-..+++..-. .|... ...+-..|+-...+ -|+.+.|..+ +.. .....+.+++++-..|+.
T Consensus 156 dydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i--------l~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 156 DYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI--------LLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred hHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH--------HHHHHhccCCCChHHHHHHHHH
Confidence 67777777765433 33211 12455556655555 7999888877 666 444567889999998888
Q ss_pred HHHc---------CCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHH----HHHHHH---HHHH-cCCCCCCcHHHH
Q psy8681 257 LEDE---------GNADLIRETYERAIANIPPTK----FAELESLLGDME----RARAIY---ELAI-SQPRLDMPELVW 315 (521)
Q Consensus 257 ~~~~---------g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e----~Ar~if---e~al-~~~~~~~~~~lw 315 (521)
+-.. ...+.|...|.++....|+.. ++.|....|... +.+.+- ...+ .....+.....|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 7431 136788889999988876533 555555445322 222222 1111 111111123455
Q ss_pred HH--HHHHHHhcCChHHHHHHHHHHHhcCCCHHHH
Q psy8681 316 KA--YIDFEVGQGERDKVRELHERLLERTVHVKVW 348 (521)
Q Consensus 316 ~~--yi~~e~~~g~~~~Ar~l~eral~~~~~~~vw 348 (521)
.. +.....-.|++++|...+++++.. .++.|
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 43 344455567778888888777766 35555
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.3 Score=43.54 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|+.|+...|.++++...|+.+.+...++-+|-.+|-+|+...|.
T Consensus 139 feHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 139 FEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 55555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.9 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKVWMNYAQF 354 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~vwi~ya~~ 354 (521)
...|...++.+.+.|++++|.++|+++.+.. |+...+..++..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999999999864 777777666543
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=88.46 E-value=26 Score=34.18 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=72.6
Q ss_pred HHHHHhh--CCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------------H---HHHHHHcCCH
Q psy8681 236 YEEEVNS--NPNNYDAWF----DYLRLLEDEGNADLIRETYERAIANIPPTK--------------F---AELESLLGDM 292 (521)
Q Consensus 236 ye~al~~--~P~~~~~W~----~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------------~---a~le~~~g~~ 292 (521)
|+..|.. +..+..+|+ .++.++...+.+.....++.+.-..|.... | +.++....+-
T Consensus 128 YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnN 207 (440)
T KOG1464|consen 128 YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNN 207 (440)
T ss_pred HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhccc
Confidence 6655553 456667775 567777766666666666666555444322 3 3566677788
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHH----HHHHHHHhcCChHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc
Q psy8681 293 ERARAIYELAISQPRLDMPELVWK----AYIDFEVGQGERDKVRELHERLLERT-----VH---VKVWMNYAQFEMSS 358 (521)
Q Consensus 293 e~Ar~ife~al~~~~~~~~~~lw~----~yi~~e~~~g~~~~Ar~l~eral~~~-----~~---~~vwi~ya~~e~~~ 358 (521)
..-..+|+.++.....-+++.+.- .-+.+..+.|.+++|-.=|=.|.+.+ |- .--++-+|.++...
T Consensus 208 KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS 285 (440)
T KOG1464|consen 208 KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKS 285 (440)
T ss_pred HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHc
Confidence 888899999987322212222221 11234556788888887777777764 21 22244456666554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.38 E-value=15 Score=37.81 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFF 140 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~ 140 (521)
..+| .+++.+.++.++...|+...|-.+.++||=.+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~ 70 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF 70 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6789 89999999999999999999999999998764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=88.30 E-value=2.2 Score=42.04 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 322 EVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
..+.|+.++|..+|+.++...| ++.+.+.|+.|.....+ +-.|-.+|-+|+.+.|.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCch
Confidence 3467999999999999999987 79999999999888776 9999999999999988764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=15 Score=34.08 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=64.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCch
Q psy8681 284 ELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~ 362 (521)
.-+...|+++.|...+..++..+... ....+-..........|.++.|..++.......-...+-..-+..+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~-- 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD-- 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc--
Confidence 33567799999999999998754311 122334445556778888888888776543322123333446677778888
Q ss_pred hhHHHHHHHHHHHHHhccc
Q psy8681 363 SVSLARRVFERANQALKAS 381 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~ 381 (521)
.+.||.-|++|+..++++
T Consensus 175 -k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 175 -KQEARAAYEKALESDASP 192 (207)
T ss_pred -hHHHHHHHHHHHHccCCh
Confidence 999999999999988654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.63 Score=43.85 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=51.4
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+.|+.+.+-.. |.+++..-|.....|+.++.+.++.|+++.|-..|+..++..|.+.
T Consensus 7 ~~~D~~aaael--------y~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAEL--------YNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHH--------HHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45666766655 9999999999999999999999999999999999999999999865
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.77 Score=47.76 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..++.|..+|-+||+..|... .+|..-+....+.+++..|..- ..++++.+|.....+..-+...+..+.
T Consensus 18 ~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~D--------a~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHD--------ALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHH--------HHhhhhcCchhhheeeeccHHHHhHHH
Confidence 489999999999999999765 3443333333455666666543 788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 263 ADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
.-+|...|+......|+..++.--..--+.--.+.-|+.++-.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~ 131 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTP 131 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999998874332211112222334566666543
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=87.89 E-value=15 Score=36.82 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=94.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCchh--------HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN-IPPTK--------FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~-~P~~~--------~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.+++.|...|.+.-+|..--..+.-+|+...-+..+++.+-. +|+-+ |+--....|.++.|...-.+|++.
T Consensus 125 ~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 125 EWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 488999999999999988888888889888888888887765 44332 333345789999999999999998
Q ss_pred CCCCCcHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYI--DFEVGQGERDKVRELHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 306 ~~~~~~~~lw~~yi--~~e~~~g~~~~Ar~l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
++++ .|..-. ..+.-.|.+.++.+...+--..-. ....|-..|.|...-+. ++.|..||++-+-.
T Consensus 205 N~~D----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~aleIyD~ei~k 276 (491)
T KOG2610|consen 205 NRFD----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKALEIYDREIWK 276 (491)
T ss_pred CCcc----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHHHHHHHHHHHH
Confidence 7765 565544 344456777777776654322111 12223344555555455 88999999887643
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=87.45 E-value=42 Score=35.49 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhc-C--------C-------hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 184 EHERARVIYKYALDH-I--------P-------KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~-~--------P-------~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
.+.-+..+|.+||.. + | .+++..+....+-..-..|.+..|... |..++...-.++
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC--------f~~av~vfh~nP 369 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC--------FQKAVHVFHRNP 369 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH--------HHHHHHHHhcCc
Confidence 777777888888852 1 1 112223333333344456777777766 999999999999
Q ss_pred HHHHHHHHHHH
Q psy8681 248 DAWFDYLRLLE 258 (521)
Q Consensus 248 ~~W~~y~~~~~ 258 (521)
.+|+.++..+.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.40 E-value=5.7 Score=42.02 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=63.8
Q ss_pred hhhhhhH-HHHHH---HHHHhcCChhhhhhhcCCCcH----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHc
Q psy8681 53 LKLLEKA-KAWKK---AMEEKQGNKIGEEGANKENEE----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQN 123 (521)
Q Consensus 53 i~~lP~~-~~W~~---~~e~~~gn~~~Ar~ife~P~~----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~ 123 (521)
-+++|.+ +-+.. .+.++.|-.+.|..+-.+|+. .+++|+++.|..+ ... ++...|..+++..+..
T Consensus 287 ~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 287 SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHT
T ss_pred hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHc
Confidence 3577777 55555 677899999999999998887 7889999999988 543 3678999999999999
Q ss_pred CChhHHHHHHHHHHHh
Q psy8681 124 GFVSGARKVYERAVEF 139 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~ 139 (521)
|+++-|..+|.++-..
T Consensus 361 g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 361 GNIELAEECYQKAKDF 376 (443)
T ss_dssp TBHHHHHHHHHHCT-H
T ss_pred CCHHHHHHHHHhhcCc
Confidence 9999999999998544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.93 E-value=16 Score=33.39 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh--HH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEK--EE 386 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~--~~ 386 (521)
..+...++++.+.|+++.|.+.|.++...+. ...+++..+....-.++ +..+.....+|-......++- ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d---~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD---WSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhccchHHHHH
Confidence 4566778888899999999999999888763 36678888888887787 888888888887766554332 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 387 RVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 387 ~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
+..+......+. .|+...+...+
T Consensus 114 rlk~~~gL~~l~--~r~f~~AA~~f 136 (177)
T PF10602_consen 114 RLKVYEGLANLA--QRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHHH--hchHHHHHHHH
Confidence 344555544433 46665554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=86.66 E-value=25 Score=36.36 Aligned_cols=94 Identities=16% Similarity=0.015 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---hh--------HHHHHHHcCCHHHHHHHHHHHHc--CC--CCCCcH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP---TK--------FAELESLLGDMERARAIYELAIS--QP--RLDMPE 312 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~---~~--------~a~le~~~g~~e~Ar~ife~al~--~~--~~~~~~ 312 (521)
.++.+++..+.=.|+++.|.+.|.+++...-. .. +++.+.-+.+++.|...+.+-+. +. ...-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34556666777778888899988887664211 11 45556666778888887776443 11 110112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
...-+++......|+..+|....+..++.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23334456666788888888887777665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.39 E-value=33 Score=36.31 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=80.1
Q ss_pred hhHHHHHHHHH--HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh---------h--CCCCHHH
Q psy8681 183 EEHERARVIYK--YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN---------S--NPNNYDA 249 (521)
Q Consensus 183 ~~~e~Ar~iy~--~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~---------~--~P~~~~~ 249 (521)
++++.+..+.+ ..+..+|. ......+.|..+.|-.+.|..++... +..|+-||+ . ...++..
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~-~~rFeLAl~lg~L~~A~~~a~~~~~~~~ 349 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDP-DHRFELALQLGNLDIALEIAKELDDPEK 349 (443)
T ss_dssp T-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-H-HHHHHHHHHCT-HHHHHHHCCCCSTHHH
T ss_pred CChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCCh-HHHhHHHHhcCCHHHHHHHHHhcCcHHH
Confidence 46666655554 33444553 45788889999999888877654211 223444443 2 2357889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChH
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~ 329 (521)
|..++...+..|+++-|..+|+++-.. +.+.-|+...|+.+.-.++-..|......+ ..+..+ .-.|+++
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~---~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n---~af~~~----~~lgd~~ 419 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKDF---SGLLLLYSSTGDREKLSKLAKIAEERGDIN---IAFQAA----LLLGDVE 419 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT-H---HHHHHHHHHCT-HHHHHHHHHHHHHTT-HH---HHHHHH----HHHT-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCc---cccHHHHHHhCCHHHHHHHHHHHHHccCHH---HHHHHH----HHcCCHH
Confidence 999999999999999999988884221 114556777888888888777777654311 122222 1457777
Q ss_pred HHHHHHHH
Q psy8681 330 KVRELHER 337 (521)
Q Consensus 330 ~Ar~l~er 337 (521)
+..+++..
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.1 Score=44.64 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
|-.+|.++|....++-.-+..+...+.+..|+.-|..|+.++|++
T Consensus 137 ~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 137 FTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 555555555555555555555555555555555555555555543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=85.13 E-value=8.4 Score=36.95 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred hhhhhhHHHHHHHHHHHHhcC--------Chhh--------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 179 KFQYEEHERARVIYKYALDHI--------PKDR--------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~--------P~~~--------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++..+.+.+|...|..|+... |.+. ...++..|.+-....|++-.+.+. ....|..
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh--------~seiL~~ 259 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH--------CSEILRH 259 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH--------HHHHHhc
Confidence 566678999999999887542 3321 113444444444344443333322 5556667
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.|.+..+++.-++.+...=+.++|+.-|..++.+.|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 7777777777777777666777777777777777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=84.95 E-value=4.1 Score=28.35 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
|++..|..++..+.+.|++++|.++|+++.+.-- .++...|..+.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~--~P~~~Ty~~li 45 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI--KPDSYTYNILI 45 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 7888999999999999999999999999997621 23444444443
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=84.75 E-value=69 Score=35.44 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=28.6
Q ss_pred hhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy8681 100 RKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE 138 (521)
Q Consensus 100 ral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~ 138 (521)
+++ ..+|.+.+|..++..-...-.++.|...|-++-.
T Consensus 684 qfi--EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 684 QFI--EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred HHH--hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 456 6788899999999988777777788777777644
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.40 E-value=35 Score=31.70 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
=+.++..+...++++.|...+..++..-.+.. ++.+...+|.++.|..+++...... + ...+-..-+++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhH
Confidence 35566677788999999999999887544433 6777788899999998887543321 1 12233344677
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC
Q psy8681 322 EVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
+...|+-..||..|+.++...++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88899999999999999988643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.13 E-value=2.2 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..|......|+ .++|+.+|++.+..+|+
T Consensus 5 ~~a~~~~~~g~---~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGD---YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCH---HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccC---HHHHHHHHHHHHHHCcC
Confidence 33444444444 55555555555555553
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=84.08 E-value=41 Score=32.24 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH----h-
Q psy8681 261 GNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV----G- 324 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~----~- 324 (521)
.+++.|+..|+.|-.-..... -+.+-..+|.+.+|..+|+......- +.+..=|..-..|+. +
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-DNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHhHHHHHHHHHHHHhH
Confidence 355666666666654332211 34555678999999999999876321 112223443333321 1
Q ss_pred -cCChHHHHHHHHHHHhcCC
Q psy8681 325 -QGERDKVRELHERLLERTV 343 (521)
Q Consensus 325 -~g~~~~Ar~l~eral~~~~ 343 (521)
.++.-.+...+++.....|
T Consensus 207 ~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hcccHHHHHHHHHHHHhcCC
Confidence 2556666677777777666
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=83.32 E-value=1.4e+02 Score=37.86 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh-cc
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL-KA 380 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~-~~ 380 (521)
....|..++.+.+..|.++.|....-.|.+.. -+.+.+..|.++.+.|+ ..+|..+++..+..+ |+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhccc
Confidence 46899999999999999999988877776544 67899999999999998 999999999999654 44
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.75 E-value=2.1 Score=25.19 Aligned_cols=31 Identities=19% Similarity=-0.067 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
..|..++..+...|+++.|...|.+++...|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 5688999999999999999999999998754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.33 E-value=20 Score=32.77 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHH-------HHHHH
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVW-------MNYAQ 353 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vw-------i~ya~ 353 (521)
.+.++.+.|+.+.|...|.++...+.. .....++...|..-...|++..+.....++-.......-| +.-+.
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 555666666666666666666553311 1124577777888888889888888888776553221112 22333
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 354 FEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 354 ~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+....++ +..|-..|-.++..+.
T Consensus 122 ~~l~~r~---f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 122 ANLAQRD---FKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHhch---HHHHHHHHHccCcCCC
Confidence 3344455 7777777776665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=81.32 E-value=25 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHhcCC-----C-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 324 GQGERDKVRELHERLLERTV-----H-----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~-----~-----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+.|++..|.+.+.+.+.... . .-..+..+.+....|+ .+.|...++.|+......++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~---~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH---YEEALQALEEAIRLARENGD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHCC
Confidence 67888888777777766531 1 2345667777888888 99999999999998877665
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=80.10 E-value=59 Score=31.39 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+...|.+-....|++-++.+.....|..+| +++.+..-|......-+ ..+|+.-|..++...|.-
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChhh
Confidence 566676667778999999999999999887 79999998888887777 899999999999988864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 521 | ||||
| 2ooe_A | 530 | Crystal Structure Of Hat Domain Of Murine Cstf-77 L | 2e-04 |
| >pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 94.2 bits (233), Expect = 1e-20
Identities = 58/355 (16%), Positives = 124/355 (34%), Gaps = 30/355 (8%)
Query: 63 KKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQ 122
KK +E++ + + KE E + +R+ + + + + + +E+
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW-KKYIQWEKS 242
Query: 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQY 182
N + + + + V F E+ L + + +Y +++
Sbjct: 243 NPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
+ A IY+ A+ + K +Y AY +E+ + + Y +
Sbjct: 300 LFSDEAANIYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSI--------YNRLLAI 350
Query: 243 NPNNYD-AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELES------LLGDMERA 295
+ + Y++ R +++A + + + D A
Sbjct: 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER-----TVHVKVWMN 350
I+EL + + D+PE AYID+ E + R L ER+L ++W
Sbjct: 411 FKIFELGLKKY-GDIPEY-VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468
Query: 351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
+ FE + GD S +V +R A + E +E +L++ +K +
Sbjct: 469 FLAFESNIGDLAS---ILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSAS 520
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 86.5 bits (213), Expect = 4e-18
Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 39/305 (12%)
Query: 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-------DVIVSKRKFQ 181
R+VY+R E+L+ + K+EEG + + V+K
Sbjct: 149 VRRVYQRGCVNPMINI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 206
Query: 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241
+ + + + +++K Y EK R + +I + F YE+ +
Sbjct: 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266
Query: 242 SNPNNYDAWFDYLRLLEDEGN--------------ADLIRETYERAIANIPPT------K 281
++ D W++ + LE +D YERAI+ +
Sbjct: 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326
Query: 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341
+A+ E E+ +IY ++ +D P LV+ Y+ F R + ++ E
Sbjct: 327 YADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKARED 385
Query: 342 T-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
V++ A E + S+A ++FE + E + A+ ++ +
Sbjct: 386 ARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPE------YVLAYIDYLSH 437
Query: 401 HGDDE 405
+D
Sbjct: 438 LNEDN 442
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-12
Identities = 41/262 (15%), Positives = 100/262 (38%), Gaps = 34/262 (12%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLG 290
E+++ NP + DAW +R + D R+TYER +A P + + E E
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 291 DMERARAIYELAISQ-PRLDMPELVWKAYIDF-----EVGQGERDKVRELHERLLERT-- 342
+ ++ +++ + + +D +WK Y+ + ++K+ + ++ L++
Sbjct: 61 NYDKVEKLFQRCLMKVLHID----LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM 116
Query: 343 --VHVKVWMNYAQFEMSSGDEDS------VSLARRVFERANQALKASSEKEERVMLLEAW 394
+ ++W++Y F S ++ RRV++R + E+ L +
Sbjct: 117 EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ-----LWRDY 171
Query: 395 KEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKL 454
++E ++ + + R E V +G + + P++ +
Sbjct: 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231
Query: 455 LEKAKAWKKAMEEKQGNKIGEE 476
+ K E+ + ++
Sbjct: 232 MWKKYI---QWEKSNPLRTEDQ 250
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-05
Identities = 43/326 (13%), Positives = 97/326 (29%), Gaps = 52/326 (15%)
Query: 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175
L+ E QN + ARK YER V F + + + + E
Sbjct: 18 ILIREAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAE------------------ 56
Query: 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ 235
+ + +++ +++ L + +++K Y + ++ + +++
Sbjct: 57 ----IKAKNYDKVEKLFQRCLMKVLH---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109
Query: 236 YEEEVNSNPNNYDAWFDYLRLLE---------DEGNADLIRETYERAIANIPPT------ 280
+++ +Y W DY+ L+ + +R Y+R N
Sbjct: 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169
Query: 281 KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
+ + E + + I + + M + + +R+ + +
Sbjct: 170 DYNKYEEGINIHLAKKMIEDRSRD----YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225
Query: 341 RTVHVKVWMNYAQFEMSSGDEDS-----VSLARRVFERANQALKASSEKEERVMLLEAWK 395
V +W Y Q+E S+ +E+ L +
Sbjct: 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 285
Query: 396 EFEAQHGDDESRAKLNSKLPRRAKKR 421
D + AKL S +R
Sbjct: 286 SKLLAEKGDMNNAKLFSDEAANIYER 311
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 3e-18
Identities = 50/294 (17%), Positives = 101/294 (34%), Gaps = 37/294 (12%)
Query: 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS 176
L E+Q YE+ + G ++ A++ E + ++ +
Sbjct: 23 LRTEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMN----- 74
Query: 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ A IY+ A+ + K +Y AY +E+ + + Y
Sbjct: 75 ---NAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSI--------Y 122
Query: 237 EEEVNSNPNNYD-AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLL------ 289
+ + + Y++ R +++A + + + L
Sbjct: 123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182
Query: 290 GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-----H 344
D A I+EL + + AYID+ E + R L ER+L
Sbjct: 183 KDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240
Query: 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398
++W + FE + GD S+ +V +R A + E +E +L++ +K +
Sbjct: 241 GEIWARFLAFESNIGDLASI---LKVEKRRFTAFREEYEGKETALLVDRYKFMD 291
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 3e-16
Identities = 51/289 (17%), Positives = 96/289 (33%), Gaps = 63/289 (21%)
Query: 205 AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG--- 261
+++K Y EK R + +I + F YE+ + ++ D W++ + LE
Sbjct: 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 67
Query: 262 -----------NADLIRETYERAIANIPPT------KFAELESLLGDMERARAIYELAIS 304
+D YERAI+ + +A+ E E+ +IY ++
Sbjct: 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSSGDEDS 363
+D P LV+ Y+ F R + ++ E V++ A E +
Sbjct: 128 IEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-- 184
Query: 364 VSLARRVFERANQAL--------------------------------KASSEKEERVMLL 391
S+A ++FE + S E+ +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 392 EAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDY 440
+ FE+ GD S K+ K+R + +E + + D
Sbjct: 245 ARFLAFESNIGDLASILKV-------EKRRFTAFREEYEGKETALLVDR 286
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 7e-06
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180
+ S A K++E ++ +G+ + +A+ + E
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNE------------------ 218
Query: 181 QYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDV---IVSKRKFQ 235
RV+++ L +P +++ EI+ + E GD A I V + + +
Sbjct: 219 ----DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDE 260
YE + + + + D E
Sbjct: 275 YEGKETALLVDRYKFMDLYPCSASE 299
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 1e-17
Identities = 40/295 (13%), Positives = 95/295 (32%), Gaps = 29/295 (9%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
E++ + R Y RA++ +L+ F FE + G + +
Sbjct: 98 IEDEQTRIEKIRNGYMRALQTPMGS--LSELWKDFENFELELNKITGKKIVGD------- 148
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
+ + Y+ + + + + + E + G + G S+ F +
Sbjct: 149 --TLPIFQSSFQRYQQ-IQPLIRGWSVKNAARLIDLEMENGMKLG-GRPHESRMHFIHNY 204
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----TKFAELESLLGDMER 294
++S + +F Y L G + ++ ER I + +
Sbjct: 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGD 264
Query: 295 ARAIYELAIS----QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350
+ Y + + + +L+ ++++ + + + R+L L V V++
Sbjct: 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIY 324
Query: 351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
A E + + +F + +L E + F + GD+E
Sbjct: 325 CAFIEYYATGSRAT--PYNIFSSGLLKHP------DSTLLKEEFFLFLLRIGDEE 371
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF-----AELESL 288
EE++ ++ A ++ R L + + + R + + +
Sbjct: 1 MDAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV 60
Query: 289 LGDMERARAIYELAISQPRLDMPE-LVWKAYIDF----EVGQGERDKVRELHERLLERTV 343
+ +YE + Q ++K YI+ E Q +K+R + R L+ +
Sbjct: 61 SQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM 120
Query: 344 H--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392
++W ++ FE+ + + + + + +
Sbjct: 121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 71.6 bits (174), Expect = 2e-13
Identities = 41/390 (10%), Positives = 108/390 (27%), Gaps = 45/390 (11%)
Query: 62 WKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELV--- 118
++ + E + ++ + +R+ + E + Y +++L+
Sbjct: 247 ARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL 306
Query: 119 ----FEEQNG-------FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167
+E N + VY +A + +++ A ++ +
Sbjct: 307 EWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVI 363
Query: 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
+ + + + + +I + T
Sbjct: 364 TKYLKLGQQCIPNSAVLA------FSLSEQY---ELNTKIPEIETTILSCIDRIHLDLAA 414
Query: 228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------ 281
++ + Y+ ++ R+ + +
Sbjct: 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474
Query: 282 FAELE-SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
A +E + D + A + EL + D Y+DF + E +V+ L E ++
Sbjct: 475 NAYIEYHISKDTKTACKVLELGLKYFATDGE--YINKYLDFLIYVNEESQVKSLFESSID 532
Query: 341 RTVHVK----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE---RVMLLEA 393
+ ++ FE G +SV R + +R + ++ EE + +L+
Sbjct: 533 KISDSHLLKMIFQKVIFFESKVGSLNSV---RTLEKRFFEKFPEVNKLEEFTNKYKVLDV 589
Query: 394 WKEFEAQHGDDESRAKLNSKLPRRAKKRVK 423
+ + R +K
Sbjct: 590 NYLQRLELDYMVRDVMPEAIALDRGSNNLK 619
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 65.8 bits (159), Expect = 2e-11
Identities = 47/418 (11%), Positives = 118/418 (28%), Gaps = 26/418 (6%)
Query: 10 QITAEQLLREAKERDLEIVPPVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEK 69
Q+TA + + E + + W + + K + +++
Sbjct: 244 QLTARRHIGE-LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302
Query: 70 QGNK--IGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVS 127
I E NK ++ K R + + + + E+N +
Sbjct: 303 LIWLEWIRWESDNKLELSDDLHKARMTYVY-MQAAQHVCFAPEIWFNMANYQGEKNTDST 361
Query: 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187
K + + L + ++ E K + + +
Sbjct: 362 VITKYLKLGQQCIPN---SAVLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALME 417
Query: 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247
+ A++ + + +Y Y K+ + + RK +
Sbjct: 418 DDPTNESAINQLKS-KLTYVYCVYMNTMKRIQG-------LAASRKIFGKCRRLKKLVTP 469
Query: 248 DAWFDYLRL-LEDEGNADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYEL 301
D + + + + + E + K+ + + + + ++++E
Sbjct: 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529
Query: 302 AISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD 360
+I + + +++++ I FE G + VR L +R E+ +F
Sbjct: 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYKV 586
Query: 361 EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418
D L R + + + + +R E + G + K N
Sbjct: 587 LDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKKFKANEDPIPPE 644
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 53.5 bits (127), Expect = 1e-07
Identities = 32/272 (11%), Positives = 84/272 (30%), Gaps = 35/272 (12%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
+ + + P + + L+ + ET+++ P LE
Sbjct: 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK 113
Query: 290 ---GDMERARAIYELAISQPRLDMPELVWKAYIDF--------EVGQGERDKVRELHERL 338
D + +S+ + +W +YI + G+ R+ V + + +
Sbjct: 114 MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173
Query: 339 LERTV-----HVKVWMNYAQFEMSSGDEDS------VSLARRVFERANQALKASSEKEER 387
+++ ++ W Y F + V R++++ E
Sbjct: 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES--- 230
Query: 388 VMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEE---VFDYIFPE 444
+ + + ++E +R + + R + + +G + + E
Sbjct: 231 --MWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288
Query: 445 DEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEE 476
KPN +++ W + + + NK+
Sbjct: 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELS 320
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/375 (10%), Positives = 99/375 (26%), Gaps = 92/375 (24%)
Query: 75 GEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRE----LVFEEQNGFVSGAR 130
G++ R R R+E D D + + L
Sbjct: 27 GQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVY 86
Query: 131 KVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190
+ +++ + F L ++ E + E+ +
Sbjct: 87 ETFDKLHDRF---PLMANIWCMRLSLEFDKMEE-------------------LDAAVIEP 124
Query: 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS----NPNN 246
+ L + ++ +Y + +K D + + ++ V+ P +
Sbjct: 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS 184
Query: 247 YDAWFDYLRLL---------EDEGNADLIRETYERAIANIPP------------------ 279
W +YL L E++ IR+ Y+ +
Sbjct: 185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ 244
Query: 280 ------------------TKFAELESLLGDMERARAIYELAISQPRLDMPEL-------V 314
+ + + ++ ++R I ++ L P +
Sbjct: 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304
Query: 315 WKAYIDFEVGQGERDK-------VRELHERLLERTVHV-KVWMNYAQFEMSSGDEDSVSL 366
W +I +E + ++ + + ++W N A ++ + +V
Sbjct: 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV-- 362
Query: 367 ARRVFERANQALKAS 381
+ + Q + S
Sbjct: 363 ITKYLKLGQQCIPNS 377
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 74/611 (12%), Positives = 177/611 (28%), Gaps = 205/611 (33%)
Query: 7 AEIQITAEQLL---REAKERDLEIVPPVEEGWEEVF-----DYIFPEDEAAKPNLKLL-- 56
E Q + +L +A + + V++ + + D+I +A L+L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 57 ---EKAKAWKKAMEEK-QGN------KIGEEGANKENEEEERDKERDREEED-------- 98
++ + +K +EE + N I E ++RDR D
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 99 -ERKDE---------GDRDSD--TTYGM-------------RELVFEEQNGFVSGARKVY 133
R R + G+ + + F K+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KI- 184
Query: 134 ERAVEF---FGEENLDEKLFIAFAK--------FEEGQREKYGDRAGIEDVIVSKRK-FQ 181
F N E + K + + I + R+ +
Sbjct: 185 -----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK-----KYGDRAGIEDVIVSKRKFQY 236
+ +E ++ L ++ + A+ + A+ + K ++ + D + +
Sbjct: 240 SKPYENCLLV----LLNV---QNAKAWNAFNLSCKILLTTRF---KQVTDFLSAATTTHI 289
Query: 237 ------------------------------EEEVNSNP-----------NNYDAWFDYLR 255
E + +NP + W D +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWK 348
Query: 256 LLEDEG------------NADLIRETYER-AI----ANIPPT---------KFAELESLL 289
+ + R+ ++R ++ A+IP +++ ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 290 GDMERARAIYELAISQP---RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK 346
+ + Y L QP + +P + Y++ + + + LH +++ K
Sbjct: 409 NKLHK----YSLVEKQPKESTISIPSI----YLEL---KVKLENEYALHRSIVDHYNIPK 457
Query: 347 V--------------WMNYAQFEMSSGD-EDSVSLARRVF----------ERANQALKAS 381
+ ++ + + + + ++L R VF + A AS
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 382 SEKEERVMLLEAWKEFEAQHGDDESRAKLNSK---LPRRAKKRVKTYNDEGVEEGWEEVF 438
+ L+ +K + + D + +N+ LP+ + + + + +
Sbjct: 518 GSILNTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 439 DYIFPEDEAAK 449
+ IF +EA K
Sbjct: 577 EAIF--EEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 42/315 (13%), Positives = 86/315 (27%), Gaps = 96/315 (30%)
Query: 10 QITAEQLLREAKERDLEIVPPVEEGWEEVFDY--IFPEDEAAKPNLKLLEKAKAWKKAME 67
+ ++L E L ++ P E ++FD +FP A LL W
Sbjct: 349 HVNCDKL-TTIIESSLNVLEPAEY--RKMFDRLSVFPPS--AHIPTILLS--LIW----- 396
Query: 68 EKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFV 126
+ + + + ++ ++T + + E +
Sbjct: 397 -----------FDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELK---- 436
Query: 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-DVIVSKRKFQYEEH 185
K+ L + + Y + D ++ QY
Sbjct: 437 ---VKLENEY-------ALHRSI-----------VDHYNIPKTFDSDDLIPPYLDQY--- 472
Query: 186 ERARVIYKYALDHIPKDRTAE-------IYKAYTIHEKK-------YGDRAGIEDVIVSK 231
Y + H+ E ++ + E+K + I + +
Sbjct: 473 -----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 232 RKFQYEEEVNSNPNNYDAWF-DYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG 290
+ Y+ + N Y+ L L +LI +K+ +L +
Sbjct: 528 KF--YKPYICDNDPKYERLVNAILDFLPKIE-ENLIC------------SKYTDLLR-IA 571
Query: 291 DMERARAIYELAISQ 305
M AI+E A Q
Sbjct: 572 LMAEDEAIFEEAHKQ 586
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.93 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.53 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.26 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.2 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.12 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.08 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.03 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.01 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.97 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.97 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.95 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.94 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.94 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.83 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.82 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.72 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.53 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.39 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.39 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.36 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.23 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.22 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.57 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.52 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.31 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.82 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.81 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 96.77 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 96.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.26 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 96.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.16 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.02 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.66 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.93 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.99 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 90.45 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 86.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 85.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.69 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.42 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.74 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 80.57 |
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=293.09 Aligned_cols=347 Identities=13% Similarity=0.108 Sum_probs=245.8
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhccc---chhhHHH-HhhhccCC
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKE---RDREEED-ERKDEGDR 106 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~---~e~Ar~~-eral~~~~ 106 (521)
..++|..+|.+ ..|.+ .++...|++..+|.+|+ .|.. |.+.|+ ++.++.+ +|+| ..
T Consensus 55 lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal--~~ 132 (679)
T 4e6h_A 55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL--SK 132 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT--CS
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--Hh
Confidence 45778889999 99999 77778899999999999 5765 778888 9999999 9999 88
Q ss_pred C---CChhhHHHHHHHHHHcCCh--------hHHHHHHHHHHHhcCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHH
Q psy8681 107 D---SDTTYGMRELVFEEQNGFV--------SGARKVYERAVEFFGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI 174 (521)
Q Consensus 107 ~---P~~~~W~~~a~~e~~~g~~--------~~Ar~vye~Al~~~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~ 174 (521)
+ |++.+|..|+.+..+.++. +.++.+|++|+..+|. ++.+..+|..|+.|+..... .. -+
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~-~~----~~--- 204 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP-VN----KF--- 204 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC-CS----HH---
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc-cC----cH---
Confidence 8 8999999999999887654 4567999999999987 77788999999999864320 00 00
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh---------------------------------
Q psy8681 175 VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR--------------------------------- 221 (521)
Q Consensus 175 l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~--------------------------------- 221 (521)
...++++++|.+|+++|. .|......+|..|..|++..+..
T Consensus 205 -----eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 -----EEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----HHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 000144555555555553 34433334455554444432210
Q ss_pred --------------------------------------hhHHHHHHhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 222 --------------------------------------AGIEDVIVSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 222 --------------------------------------~~a~~~i~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..+.+.+..+| +..|++||..+|.++++|+.|+.++...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 00000011122 467999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-----------CCC---------CcHHHHH
Q psy8681 263 ADLIR-ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP-----------RLD---------MPELVWK 316 (521)
Q Consensus 263 ~~~Ar-~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-----------~~~---------~~~~lw~ 316 (521)
.+.|+ .+|++|+..+|.+. |+.++...|++++|+.+|++++... |.. ....+|.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 88896 99999999999876 7888888899999999999888631 110 0235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc------------------------------------CC-CHHHHHHHHHHHHHcC
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLER------------------------------------TV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~------------------------------------~~-~~~vwi~ya~~e~~~g 359 (521)
.|+.|+.+.|+.+.||.+|.+|++. +| ++.+|+.|+.|+...|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 8888877666655555555555543 33 3444555555555555
Q ss_pred CchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchh
Q psy8681 360 DEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRR 417 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~ 417 (521)
+ .++||++|++|+..+|+. +.+..||..|..||..+|+.+++.+|.+++...
T Consensus 519 ~---~~~AR~lferal~~~~~~---~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 519 E---ESQVKSLFESSIDKISDS---HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp C---HHHHHHHHHHHTTTSSST---THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 666666666666655531 246789999999999999999999999888533
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=276.51 Aligned_cols=356 Identities=19% Similarity=0.258 Sum_probs=250.2
Q ss_pred CCchhhhhhH-HHHHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCChh
Q psy8681 50 KPNLKLLEKA-KAWKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSDTT 111 (521)
Q Consensus 50 ~rai~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~~~ 111 (521)
.++|...|.. .+|.. --+...|+++.|+.+|+ .|.+ +.+.|+++.|+.+ +|+| ..+|++.
T Consensus 3 e~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral--~~~p~~~ 80 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL--MKVLHID 80 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TTCCCHH
T ss_pred hhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCChH
Confidence 3567889999 99998 22366899999999998 5876 7788999999999 9999 9999999
Q ss_pred hHHHHHHHHH-HcCChhHHHH----HHHHHHHhcCCccccHHHHHHHHHHHHh---------hhh------hccccc---
Q psy8681 112 YGMRELVFEE-QNGFVSGARK----VYERAVEFFGEENLDEKLFIAFAKFEEG---------QRE------KYGDRA--- 168 (521)
Q Consensus 112 ~W~~~a~~e~-~~g~~~~Ar~----vye~Al~~~~~~~~~~~lw~~~a~~e~~---------~~~------~~~~~~--- 168 (521)
+|..|+.+.. ..|+++.|+. +|++++...|.++.+..+|..|+.|+.. .+. .|.+..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 9999998765 5688877665 9999999888777789999999999875 330 111111
Q ss_pred -----hhhHHHHHh--hh----------hhhhhHHHHHHHHHH------HHhc----CChh------hHHHHHHHHHHHH
Q psy8681 169 -----GIEDVIVSK--RK----------FQYEEHERARVIYKY------ALDH----IPKD------RTAEIYKAYTIHE 215 (521)
Q Consensus 169 -----~~~~~~l~~--~~----------~~~~~~e~Ar~iy~~------aL~~----~P~~------~~~~l~~~~~~~e 215 (521)
.+|..|..- .. ...+.+..|+.+|.. +++. .|.. ....+|..|+.++
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 111111110 00 012345556666554 4432 1211 1235667777666
Q ss_pred HHcCC-hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCc
Q psy8681 216 KKYGD-RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-------EGNAD-------LIRETYERAIA-NIPP 279 (521)
Q Consensus 216 ~~~G~-~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-------~g~~~-------~Ar~~~erAl~-~~P~ 279 (521)
+..+. .+... ....+....|++++..+|.++++|+.|+.++.. .|+++ +|+.+|++|+. .+|.
T Consensus 241 ~~~~~~~~~~~-~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 241 KSNPLRTEDQT-LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHCSSCCSCSH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HcCCccCCcch-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 65321 00000 000011235888888888888888888888876 57766 78888888887 6776
Q ss_pred hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh------------------------------
Q psy8681 280 TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG------------------------------ 324 (521)
Q Consensus 280 ~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~------------------------------ 324 (521)
+. |+.++...|++++|+.+|++++..+|.+ +..+|..|+.++.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 55 6777778888888888888888765543 23577777766544
Q ss_pred -----cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q psy8681 325 -----QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398 (521)
Q Consensus 325 -----~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE 398 (521)
.|+++.|+.+|+++++.+| ++.+|+.|+.++...|+ +++||.+|++|+...|.++. ....+|..|+.||
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~~~--~~~~lw~~~~~~e 473 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPE--KSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSCGG--GCHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCCHH--HHHHHHHHHHHHH
Confidence 4566667777777777666 58889999999888888 99999999999988765432 3457999999999
Q ss_pred HHcCCHHHHHHHHhhC
Q psy8681 399 AQHGDDESRAKLNSKL 414 (521)
Q Consensus 399 ~~~G~~~~~~~v~~~~ 414 (521)
..+|+.+++..+..++
T Consensus 474 ~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 474 SNIGDLASILKVEKRR 489 (530)
T ss_dssp HHSSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999998887766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=267.65 Aligned_cols=327 Identities=15% Similarity=0.051 Sum_probs=227.9
Q ss_pred HHHhcCC-hhhhhhhcC-----CCcHHHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHH
Q psy8681 66 MEEKQGN-KIGEEGANK-----ENEEEERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGF-VSGARKVYERAV 137 (521)
Q Consensus 66 ~e~~~gn-~~~Ar~ife-----~P~~e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~-~~~Ar~vye~Al 137 (521)
+|+..|+ ++.||.+|+ -|. |+++.|+.+ +|+| ..+|++++|..|+.++.+.++ .+.++.+|++|+
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~-----~~~e~~~~iferal--~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS-----KDYRSLESLFGRCL--KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6788894 999999998 354 889999999 9999 999999999999999999874 578999999999
Q ss_pred HhcCCccccHHHHHHHHHHHHh----hh------hhccccc--------hhhHHHHHhh----------hh--hhhhHHH
Q psy8681 138 EFFGEENLDEKLFIAFAKFEEG----QR------EKYGDRA--------GIEDVIVSKR----------KF--QYEEHER 187 (521)
Q Consensus 138 ~~~~~~~~~~~lw~~~a~~e~~----~~------~~~~~~~--------~~~~~~l~~~----------~~--~~~~~e~ 187 (521)
..+|.++.++.+|..|+.|+.. ++ ..|.++. .+|..|..-. .. ....+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 9988777789999999999652 23 0111111 1122121100 00 0122334
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC-hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD-RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~-~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
||.+|+.+....|.. +..+|..|+.||+.++. .... ....+.+..|+++|..+|.++.+|+.|+.++...|+++.|
T Consensus 156 ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~~~--~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLGGR--PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCCHH--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCcch--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 444444444332220 11356666666654321 1100 0001124579999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchh---------------------------------------------HHHHHHHcCCHHHHHHHHHH
Q psy8681 267 RETYERAIANIPPTK---------------------------------------------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 267 r~~~erAl~~~P~~~---------------------------------------------~a~le~~~g~~e~Ar~ife~ 301 (521)
+.+|++|+.. |.+. |+.++...|+.++||.+|++
T Consensus 233 r~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 233 KKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 8764 23334456778889999998
Q ss_pred HHcCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 302 AISQPRLDMPELVWKAYIDFEVGQG-ERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 302 al~~~~~~~~~~lw~~yi~~e~~~g-~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
| ..++. ...+|..++.++...| +.+.||.+|+++++.+| .+.+|+.|+.|+...|+ .++||.+|+++.
T Consensus 312 A-~~~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~---- 381 (493)
T 2uy1_A 312 L-GNEGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLE---- 381 (493)
T ss_dssp H-TTSCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSC----
T ss_pred h-hCCCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH----
Confidence 8 54432 4568888888887776 58889999999988876 47788888888888887 888999998882
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
. ...+|..|.+||..+||.++++++..+.-..++
T Consensus 382 k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 382 K------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp C------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 2 257999999999999999999997766644443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=232.73 Aligned_cols=319 Identities=18% Similarity=0.198 Sum_probs=252.7
Q ss_pred ccCCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHH----H-Hhhhc
Q psy8681 47 EAAKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEE----D-ERKDE 103 (521)
Q Consensus 47 ~~~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~----~-eral~ 103 (521)
.++.+++..+|.. .+|+. .++...|+++.|+.+|+ .|+. ....|+++.|+. + ++++.
T Consensus 33 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~ 112 (530)
T 2ooe_A 33 KTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALD 112 (530)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 4577899999999 99999 88889999999999999 5864 224678888776 6 67651
Q ss_pred c-CCCC-ChhhHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh-----------
Q psy8681 104 G-DRDS-DTTYGMRELVFEEQ---------NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR----------- 161 (521)
Q Consensus 104 ~-~~~P-~~~~W~~~a~~e~~---------~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~----------- 161 (521)
. ..+| +..+|..|+.++.. .|+++.|+.+|++++. .|. .....+|..|+.|+...+
T Consensus 113 ~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~-~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 190 (530)
T 2ooe_A 113 KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM-INIEQLWRDYNKYEEGINIHLAKKMIEDR 190 (530)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC-TTHHHHHHHHHHHHHHHCHHHHHHHHHTT
T ss_pred HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh-hhHHHHHHHHHHHHHhhchhHHHHHHHHh
Confidence 0 2356 78999999999987 6889999999999998 453 223577777777653221
Q ss_pred ------h------------hccc-------c--------chhhHHHH---------------------------------
Q psy8681 162 ------E------------KYGD-------R--------AGIEDVIV--------------------------------- 175 (521)
Q Consensus 162 ------~------------~~~~-------~--------~~~~~~~l--------------------------------- 175 (521)
+ .+.. . ..+|..|+
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~ 270 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC
Confidence 0 0100 0 01222111
Q ss_pred ------Hh--hhhh-------hhhHH-------HHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 176 ------SK--RKFQ-------YEEHE-------RARVIYKYALD-HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 176 ------~~--~~~~-------~~~~e-------~Ar~iy~~aL~-~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
.. .+.. .|+++ .|+.+|++|+. .+|.+. .+|..|+.++...|+.+.+..+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~~~g~~~~A~~~----- 343 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSI----- 343 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhcCCHHHHHHH-----
Confidence 00 0111 34544 89999999998 789876 8999999999999999999877
Q ss_pred HHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHH-HHcCCHHHHHHHHHHHHcC
Q psy8681 233 KFQYEEEVNSNPNNY-DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELE-SLLGDMERARAIYELAISQ 305 (521)
Q Consensus 233 r~~ye~al~~~P~~~-~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le-~~~g~~e~Ar~ife~al~~ 305 (521)
|++++..+|.++ .+|..|+.++.+.|+.+.|+.+|++|+...|... .+.++ ...|++++|+.+|++++..
T Consensus 344 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp ---HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ---HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 999999999986 6999999999999999999999999999877643 23343 2589999999999999997
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.|. ...+|..|++++...|++++|+.+|++++..+| ...+|..|+.|+...|+ .+.+..++.++++.+|+
T Consensus 421 ~p~--~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 YGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTHH
T ss_pred CCC--CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCch
Confidence 664 368999999999999999999999999999764 24599999999999998 99999999999999996
Q ss_pred ch
Q psy8681 381 SS 382 (521)
Q Consensus 381 ~~ 382 (521)
+.
T Consensus 496 ~~ 497 (530)
T 2ooe_A 496 EY 497 (530)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=234.65 Aligned_cols=320 Identities=14% Similarity=0.112 Sum_probs=235.0
Q ss_pred CccCCCchhhhhhH-HHHHH--HHHHhcCC---hhhhhhhcC-----C---CcH---------HHhcccc--------hh
Q psy8681 46 DEAAKPNLKLLEKA-KAWKK--AMEEKQGN---KIGEEGANK-----E---NEE---------EERDKER--------DR 94 (521)
Q Consensus 46 ~~~~~rai~~lP~~-~~W~~--~~e~~~gn---~~~Ar~ife-----~---P~~---------e~r~g~~--------e~ 94 (521)
|.++.+++..+|.. ++|++ .+|...|+ ++.++.+|+ . |+. ..+.++. +.
T Consensus 86 R~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~ 165 (679)
T 4e6h_A 86 YETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI 165 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHH
Confidence 35578999999999 99999 88899999 999999999 4 443 2234443 34
Q ss_pred hHHH-Hhhhcc-CC-CC-ChhhHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 95 EEED-ERKDEG-DR-DS-DTTYGMRELVFEEQ---------NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 95 Ar~~-eral~~-~~-~P-~~~~W~~~a~~e~~---------~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
++.+ ++++.. .. +| +..+|..|+.|+.. .+.++.+|.+|.++|. +|.. ....+|..|..|+...+
T Consensus 166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~-~~~~~w~~Y~~fe~~~~ 243 (679)
T 4e6h_A 166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMD-CLESMWQRYTQWEQDVN 243 (679)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCS-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccH-HHHHHHHHHHHHHHhcC
Confidence 5578 887721 23 67 78899999999874 3357899999999996 4532 34789999999887632
Q ss_pred h------------h---------------------cccc-------------------chhhHHHHHhhhhhh------h
Q psy8681 162 E------------K---------------------YGDR-------------------AGIEDVIVSKRKFQY------E 183 (521)
Q Consensus 162 ~------------~---------------------~~~~-------------------~~~~~~~l~~~~~~~------~ 183 (521)
. . ++.. ..+|..|+.-..... .
T Consensus 244 ~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~ 323 (679)
T 4e6h_A 244 QLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL 323 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence 0 0 1110 123444432111100 1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH-HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE-DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~-~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
...+++.+|++||..+|... .+|..|+.|+...|+.+.+. .+ |++|+..+|.+..+|+.|+.+++..|+
T Consensus 324 ~~~Rv~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~i--------l~rAi~~~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 324 HKARMTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKY--------LKLGQQCIPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 34567889999999999876 89999999999999887774 55 888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcC-----------Cc-----------hh-----HHHHHHHcCCH-----------------------
Q psy8681 263 ADLIRETYERAIANI-----------PP-----------TK-----FAELESLLGDM----------------------- 292 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~-----------P~-----------~~-----~a~le~~~g~~----------------------- 292 (521)
+++|+.+|++++... |. .. |+.++...|+.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888887642 42 11 34444444444
Q ss_pred -------------HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHHHH
Q psy8681 293 -------------ERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQFE 355 (521)
Q Consensus 293 -------------e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e 355 (521)
++|+.+|+.+++..|. ...+|..|++|+...|+.+.||.+|++++..++ ...+|..|+.||
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5555555555543332 357999999999999999999999999999876 468999999999
Q ss_pred HHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 356 MSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 356 ~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
...|+ .+.+++++.|+.+.+|+++
T Consensus 552 ~~~G~---~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGS---LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCC---SHHHHHHHHHHHHHSTTCC
T ss_pred HHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 99999 9999999999999999864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=235.98 Aligned_cols=297 Identities=16% Similarity=0.167 Sum_probs=207.3
Q ss_pred hhHHH-Hhhhcc-CCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh------
Q psy8681 94 REEED-ERKDEG-DRDS-DTTYGMRELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ------ 160 (521)
Q Consensus 94 ~Ar~~-eral~~-~~~P-~~~~W~~~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~------ 160 (521)
..+.+ ++++.. ..+| +..+|..|+.|+.. .|+++.+|.+|++||.. |. .....+|..|..|+...
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHH
Confidence 34444 555510 1234 56677777776542 34566677777777763 42 12356666666655320
Q ss_pred -------h------hhc-------cc-cchhhHHHHHhhhh---h---hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy8681 161 -------R------EKY-------GD-RAGIEDVIVSKRKF---Q---YEEHERARVIYKYALDHIPKDRTAEIYKAYTI 213 (521)
Q Consensus 161 -------~------~~~-------~~-~~~~~~~~l~~~~~---~---~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~ 213 (521)
+ ..| ++ ...+|..|+.-... + .+..++++.+|++||..+|... .+|..|+.
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~--~lW~~ya~ 221 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE--EVYFFYSE 221 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH--HHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH--HHHHHHHH
Confidence 0 000 00 11234444332110 0 0125677889999999988875 89999999
Q ss_pred HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH----------------------------------------
Q psy8681 214 HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY---------------------------------------- 253 (521)
Q Consensus 214 ~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y---------------------------------------- 253 (521)
|+...|+.+.+..+ |++++.. |.+..+|+.|
T Consensus 222 ~~~~~~~~~~ar~i--------~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 222 YLIGIGQKEKAKKV--------VERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHTTCHHHHHHH--------HHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHH--------HHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 99999998888766 8888888 8776555544
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchh------HHHHHHHcC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTK------FAELESLLG-DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~------~a~le~~~g-~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
+.++.+.++++.||.+|++| ..|... +|.+|...| +.++||.+|+.++...|. ...+|..|++|+...|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A--~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL--GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh--hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcC
Confidence 44444567799999999999 344322 578888776 699999999999996553 3568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~ 406 (521)
+.+.||.+|+++ ..+..+|..|+.||...|+ .+.+|++|++++..+..+. ++++..++++|..||+.+|+.++
T Consensus 369 ~~~~aR~l~er~---~k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~-~~~~~~~~~~~~~fe~~~g~l~~ 441 (493)
T 2uy1_A 369 DEENARALFKRL---EKTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADA-ILPPLPPREHNVQMEGILGRYHC 441 (493)
T ss_dssp CHHHHHHHHHHS---CCBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTC-CBCCCCCC--CCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccc-cCCcccccccHHHHHHHhhhHHH
Confidence 999999999998 3479999999999999999 9999999999999876432 33456789999999999998877
Q ss_pred HHHHHhhC
Q psy8681 407 RAKLNSKL 414 (521)
Q Consensus 407 ~~~v~~~~ 414 (521)
+-.-.+.|
T Consensus 442 ~~~~~~~~ 449 (493)
T 2uy1_A 442 FLDSFNFL 449 (493)
T ss_dssp HHHHHCBT
T ss_pred HHHHhhhh
Confidence 65555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=208.08 Aligned_cols=314 Identities=13% Similarity=0.051 Sum_probs=228.5
Q ss_pred hhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-Chhh
Q psy8681 53 LKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTY 112 (521)
Q Consensus 53 i~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~ 112 (521)
+...|.. ..|.. .++...|+++.|...++ .|.+ +.+.|+++.|+.. ++++ ...| ++..
T Consensus 26 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~ 103 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDG 103 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCcchHHH
Confidence 3445555 55544 55555666666666555 3433 4455666666666 6666 6666 4556
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
|..++..+...|+++.|...|++++...| ....+|..++.+....| +++.|..+|
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~ 158 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNP---DLYCVRSDLGNLLKALG----------------------RLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCT---TCTHHHHHHHHHHHTTS----------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcc----------------------CHHHHHHHH
Confidence 66666666666666666666666666543 23455555665555555 888888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
++++...|... ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++
T Consensus 159 ~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 159 LKAIETQPNFA--VAWSNLGCVFNAQGEIWLAIHH--------FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHCTTCH--HHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888766 6788888888888888888766 8888888898888888888888888888899999999
Q ss_pred HHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 273 AIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 273 Al~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
++...|.+. ++.++...|+++.|...|++++...|. ...+|..++..+...|+++.|..+|++++...| ++.
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 306 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 888888755 566677888999999999998886554 356788888888888999999999999988876 678
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+|..++..+...|+ ++.|...|++++...|.+. ..+......-...|+.+.+....+++
T Consensus 307 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 307 SLNNLANIKREQGN---IEEAVRLYRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTTCH------HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888887 8889999999888877653 23334444444678877776666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=206.44 Aligned_cols=292 Identities=14% Similarity=0.047 Sum_probs=265.8
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS- 108 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P- 108 (521)
..+++...|.. ..|+. .++...|+++.|...|+ .|++ ..+.|+++.|... ++++ ..+|
T Consensus 56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~ 133 (388)
T 1w3b_A 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL--QYNPD 133 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH--HHCTT
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC
Confidence 44667788988 89988 88889999999999998 6765 7788999999999 9999 9999
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++.++...|++++|..+|++++...| .....|..++......| +++.|
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A 188 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP---NFAVAWSNLGCVFNAQG----------------------EIWLA 188 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 689999999999999999999999999999865 46789999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...|++++...|... ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|..
T Consensus 189 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFL--DAYINLGNVLKEARIFDRAVAA--------YLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCTTHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999876 7888999999999999999877 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.+....|+++.|...|++++...|. ...+|...+.++...|+++.|..+|++++...|
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999765 577788999999999999999996654 367899999999999999999999999999987
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|...|++++...|...
T Consensus 337 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp TCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 68899999999999998 9999999999999888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-23 Score=203.96 Aligned_cols=248 Identities=18% Similarity=0.231 Sum_probs=206.7
Q ss_pred ChhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhh
Q psy8681 109 DTTYGMRELVFEEQN----GFV----SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~----g~~----~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~ 180 (521)
+..+|..|+.++.+. ++. ++|..+|++|+...| .++.+|..++.++...+..... ++....
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~--------~g~~~~ 75 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAE--------KGDMNN 75 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHH--------TSCCHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhh--------ccchhh
Confidence 468999999999885 233 689999999999966 4789999999988644200000 000000
Q ss_pred hhhhHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH-HHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALD-HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD-AWFDYLRLLE 258 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~-~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~-~W~~y~~~~~ 258 (521)
..+.+++|+.+|++|+. ..|.+. .+|..|+.++...|+.+.+..+ |++++..+|.++. +|..|+.++.
T Consensus 76 ~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 76 AKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSI--------YNRLLAIEDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHhccccCccHHHHHHHHHHH
Confidence 01135899999999999 578776 8999999999999999999877 9999999999987 9999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHH-cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESL-LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~-~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
..|++++|+.+|++|+...|... ++.++.. .|+++.|+.+|++++...|. ...+|..|+.++...|+++.|+
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999988754 3444443 69999999999999996654 4689999999999999999999
Q ss_pred HHHHHHHhc---CC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 333 ELHERLLER---TV--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 333 ~l~eral~~---~~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.+|++++.. .| +..+|..++.|+...|+ .+.|+.++.+|+..+|++.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~---~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHccccc
Confidence 999999996 33 57899999999999998 9999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-21 Score=199.76 Aligned_cols=304 Identities=11% Similarity=-0.006 Sum_probs=257.0
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-Ch
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~ 110 (521)
..+...|.. ..|+. .++...|+++.|..+|+ .|++ +...|+++.|... ++++ ...| ++
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 94 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--QLKMDFT 94 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcH
Confidence 455667888 88888 78889999999999998 5764 7788999999999 9999 9999 78
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccH---HHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDE---KLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~---~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..|..++.++...|+++.|..+|++++...|. +. .+|..++......+ ...++..+...++++.
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQR----------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHH----------HHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999998653 44 67776655533222 0111222344569999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|..+|++++...|.+. .++..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|.
T Consensus 162 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISD--------LKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCGGGGHHH--------HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCh--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 7888899999999999999877 99999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchh-----H------------HHHHHHcCCHHHHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHhcCCh
Q psy8681 268 ETYERAIANIPPTK-----F------------AELESLLGDMERARAIYELAISQPRLDMP--ELVWKAYIDFEVGQGER 328 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~------------a~le~~~g~~e~Ar~ife~al~~~~~~~~--~~lw~~yi~~e~~~g~~ 328 (521)
..|++++...|... + +......|+++.|..+|+.++...|.+.. ..+|...+.++...|++
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999865 2 66778899999999999999996554322 34778888899999999
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 329 DKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 329 ~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+.|..+|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchH
Confidence 999999999999987 68999999999999998 9999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=194.27 Aligned_cols=215 Identities=15% Similarity=0.239 Sum_probs=191.4
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-hcCCccccHHHHHHHHH
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQ-------NGFV-------SGARKVYERAVE-FFGEENLDEKLFIAFAK 155 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~-------~g~~-------~~Ar~vye~Al~-~~~~~~~~~~lw~~~a~ 155 (521)
++|+.+ ++++ ..+| ++.+|..++.++.. .|++ ++|+.+|++|+. ..| .+..+|..++.
T Consensus 33 ~~a~~~~~~al--~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 567778 8999 9999 89999999999874 5886 899999999999 444 47889999999
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE-IYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~-l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
++...| +++.|+.+|++++...|.+. . +|..|+.++.+.|+.+.+..+
T Consensus 108 ~~~~~~----------------------~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~------- 156 (308)
T 2ond_A 108 YEESRM----------------------KYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMI------- 156 (308)
T ss_dssp HHHHTT----------------------CHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHH-------
T ss_pred HHHhcC----------------------CHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHH-------
Confidence 999998 99999999999999988765 4 899999999999999988877
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
|++++..+|.+..+|..++.+... .|+++.|+.+|++|+...|.+. |+.++..+|++++|+.+|++++..++.
T Consensus 157 -~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 157 -FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp -HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred -HHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999988877654 6999999999999999999866 788899999999999999999996321
Q ss_pred --CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 309 --DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 309 --~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
+....+|..|+.++...|+++.|..++.++++.+|+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 125789999999999999999999999999999874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-20 Score=186.25 Aligned_cols=298 Identities=12% Similarity=0.013 Sum_probs=248.5
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFE 120 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e 120 (521)
..|+. ..+...|+++.|..+|+ .|++ +...|+++.|... ++++ ...| +...|..++.++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--ALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCcchHHHHHHHHH
Confidence 45555 67778999999999998 5764 7788999999999 9999 9999 789999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP 200 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P 200 (521)
...|+++.|..+|++++...|.......+|..++.+..... ...++..+...++++.|..+|++++...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR----------LRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH----------HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999985511135566666644332111 00111223344599999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 201 ~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.+. .+|..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|...|++++...|..
T Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 152 WDA--ELRELRAECFIKEGEPRKAISD--------LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp TCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred Cch--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 876 7888899999999999999877 999999999999999999999999999999999999999999986
Q ss_pred h-----H------------HHHHHHcCCHHHHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 281 K-----F------------AELESLLGDMERARAIYELAISQPRLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 281 ~-----~------------a~le~~~g~~e~Ar~ife~al~~~~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
. + +.+....|+++.|..+|++++...|.+.. ..+|..++..+...|+++.|..+|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5 1 55577899999999999999996554321 134556778888999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 342 TV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 342 ~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.| ++.+|..++..+...|+ ++.|...|++|+...|++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCH
T ss_pred CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCh
Confidence 87 78999999999999998 9999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-20 Score=201.15 Aligned_cols=310 Identities=10% Similarity=0.018 Sum_probs=266.0
Q ss_pred hhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH-------------------------------------------
Q psy8681 57 EKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE------------------------------------------- 85 (521)
Q Consensus 57 P~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~------------------------------------------- 85 (521)
|.. ..|+. ..+...|+++.|+.+|+ .|++
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 445 78887 88899999999999998 5653
Q ss_pred -----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 86 -----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 86 -----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
+.+.|+++.|+.+ ++++ ...+++.+|..++..+.+.|++++|..+|++++...|. +..+|..++.....
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSIN--GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY---NLDVYPLHLASLHE 351 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTST--TGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CCTTHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHH
Confidence 1256889999999 9998 76348999999999999999999999999999998653 45678888888888
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
.| +++.|..+|++++...|.+. .+|..++.+..+.|+.+.+..+ |+++
T Consensus 352 ~g----------------------~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~ 399 (597)
T 2xpi_A 352 SG----------------------EKNKLYLISNDLVDRHPEKA--VTWLAVGIYYLCVNKISEARRY--------FSKS 399 (597)
T ss_dssp HT----------------------CHHHHHHHHHHHHHHCTTSH--HHHHHHHHHHHHTTCHHHHHHH--------HHHH
T ss_pred hC----------------------CHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHhccHHHHHHH--------HHHH
Confidence 87 99999999999999888876 7888899999999999999877 9999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
+..+|.+..+|..++..+...|++++|..+|++++...|.+. ++.++...|+++.|..+|++++...|. ...+
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 477 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLL 477 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH
Confidence 999999999999999999999999999999999999888654 567788899999999999999986554 3578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc------CCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLER------TVH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~------~~~--~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~ 386 (521)
|..++..+...|++++|..+|++++.. .|. +.+|..++..+...|+ ++.|..+|++++...|.+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---- 550 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---- 550 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh----
Confidence 999999999999999999999999987 454 7899999999999998 9999999999999988763
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 387 RVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 387 ~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..+..+...-...|+.+.+..+.+++
T Consensus 551 --~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 551 --NVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35555555556889998887777655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=174.55 Aligned_cols=281 Identities=10% Similarity=-0.033 Sum_probs=240.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
....|+++.|... ++++ ...| ++..|..++..+...|+++.|...|++++...| ....+|..++.+....|
T Consensus 13 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-- 85 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM---DFTAARLQRGHLLLKQG-- 85 (359)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT--
T ss_pred HHHcCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHHcC--
Confidence 4568999999999 9999 9999 799999999999999999999999999999865 46788999999988888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC---hhhHHHHHHHH------------HHHHHHcCChhhHHHHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP---KDRTAEIYKAY------------TIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P---~~~~~~l~~~~------------~~~e~~~G~~~~a~~~i 228 (521)
+++.|...|++++...| .+. ..|..+ +......|+.+.+...
T Consensus 86 --------------------~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~- 142 (359)
T 3ieg_A 86 --------------------KLDEAEDDFKKVLKSNPSEQEEK--EAESQLVKADEMQRLRSQALDAFDGADYTAAITF- 142 (359)
T ss_dssp --------------------CHHHHHHHHHHHHTSCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-
T ss_pred --------------------ChHHHHHHHHHHHhcCCcccChH--HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-
Confidence 99999999999999999 665 455544 5667788999888877
Q ss_pred HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 229 ~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al 303 (521)
|++++..+|.++.+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++
T Consensus 143 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 143 -------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp -------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998866 6778889999999999999999
Q ss_pred cCCCCCCcHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHHcCCchhhHH
Q psy8681 304 SQPRLDMPELVWKAY------------IDFEVGQGERDKVRELHERLLERTVH-V----KVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 304 ~~~~~~~~~~lw~~y------------i~~e~~~g~~~~Ar~l~eral~~~~~-~----~vwi~ya~~e~~~g~~~~~~~ 366 (521)
...|.. ...|..+ +..+...|+++.|..+|++++...|+ + .+|..++..+...|+ ++.
T Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 290 (359)
T 3ieg_A 216 KLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK---PVE 290 (359)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred hhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC---HHH
Confidence 965543 3444433 55678899999999999999998874 3 345668888888888 999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 367 ARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|..+|++++...|.+. .++.....+-...|+.+.+.....++
T Consensus 291 A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNV------NALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999988764 35555555666789999888887655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-20 Score=197.40 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=249.8
Q ss_pred HHHHhcCChhhhhhhcC----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhH
Q psy8681 65 AMEEKQGNKIGEEGANK----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~ 128 (521)
.++...|+++.|+.+|+ .|.+ +.+.|+++.|..+ ++++ ...| +...|..++..+...|++++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HcCcccHHHHHHHHHHHHHhCCHHH
Confidence 34456788999999998 2332 7889999999999 9999 8889 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHH
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIY 208 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~ 208 (521)
|..+|++++...| .+..+|..++.+....| +++.|+.+|++++...|.+. ..|
T Consensus 358 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~~~~~--~~~ 410 (597)
T 2xpi_A 358 LYLISNDLVDRHP---EKAVTWLAVGIYYLCVN----------------------KISEARRYFSKSSTMDPQFG--PAW 410 (597)
T ss_dssp HHHHHHHHHHHCT---TSHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred HHHHHHHHHhhCc---ccHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHhCCCCH--HHH
Confidence 9999999998754 46789999999998888 99999999999999999876 789
Q ss_pred HHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HH
Q psy8681 209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FA 283 (521)
Q Consensus 209 ~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a 283 (521)
..++....+.|+.+.+... |++++...|.+..+|..++..+...|++++|..+|++++...|.+. ++
T Consensus 411 ~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISA--------YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHH--------HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999877 9999999999999999999999999999999999999999988765 57
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCC---CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q psy8681 284 ELESLLGDMERARAIYELAISQP---RLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS 357 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~---~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~ 357 (521)
.++...|+++.|..+|++++... +.++. ..+|..++..+...|+++.|..+|++++...| ++.+|..++..+..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77889999999999999998841 11222 67999999999999999999999999999987 78999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHhccch
Q psy8681 358 SGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 358 ~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.|+ ++.|..+|++++...|++.
T Consensus 563 ~g~---~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 563 KKI---PGLAITHLHESLAISPNEI 584 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHCTTCH
T ss_pred hCC---HHHHHHHHHHHHhcCCCCh
Confidence 998 9999999999999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=180.09 Aligned_cols=283 Identities=11% Similarity=-0.025 Sum_probs=240.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.+.|+++.|+.+ ++++ ..+| ++..|..++..+...|+++.|..+|++++...| ....+|..++......|
T Consensus 36 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g-- 108 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM---DFTAARLQRGHLLLKQG-- 108 (450)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcC--
Confidence 6788999999999 9999 9899 799999999999999999999999999999865 46788999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHHHHHH------------HHHHHHcCChhhHHHHHHh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAY------------TIHEKKYGDRAGIEDVIVS 230 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l~~~~------------~~~e~~~G~~~~a~~~i~~ 230 (521)
+++.|..+|++++...|.+.. ...|..+ +......|+.+.+...
T Consensus 109 --------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~--- 165 (450)
T 2y4t_A 109 --------------------KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF--- 165 (450)
T ss_dssp --------------------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred --------------------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 999999999999999987530 0233333 3446677888888876
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
|++++..+|.+..+|..++.++...|++++|..+|++++...|.+. ++.++...|+++.|...|++++..
T Consensus 166 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 166 -----LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp -----HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988765 577888999999999999999986
Q ss_pred CCCCCcHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHH
Q psy8681 306 PRLDMPELVWKAY------------IDFEVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLAR 368 (521)
Q Consensus 306 ~~~~~~~~lw~~y------------i~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR 368 (521)
.|. ....|..+ +..+...|+++.|..+|++++...|. ..+|..++..+...|+ ++.|.
T Consensus 241 ~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 315 (450)
T 2y4t_A 241 DQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK---PVEAI 315 (450)
T ss_dssp CTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC---HHHHH
T ss_pred CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence 554 34566555 77888999999999999999999875 4578888999999998 99999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 369 RVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 369 ~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|++++...|.+. .+|......-...|+.+.+....+++
T Consensus 316 ~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 316 RVCSEVLQMEPDNV------NALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccH------HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999988764 35555555556889998887776655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=190.21 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=204.0
Q ss_pred cccchhhHHH-HhhhccC-----C--C-------C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHH
Q psy8681 89 DKERDREEED-ERKDEGD-----R--D-------S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIA 152 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~-----~--~-------P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~ 152 (521)
.|+++.|+.+ ++++ . . . | .+..|..++..+...|+++.|..+|++++...| . ..+|..
T Consensus 202 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~-~~~~~~ 275 (514)
T 2gw1_A 202 PESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP---R-VNSYIY 275 (514)
T ss_dssp TTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC---C-HHHHHH
T ss_pred hccHHHHHHHHHHHH--HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---c-HHHHHH
Confidence 4566666666 6666 4 2 2 3 245566666666666666666666666666643 2 555566
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
++......| +++.|...|++++...|.+. .+|..++.+....|+.+.+...
T Consensus 276 l~~~~~~~~----------------------~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~----- 326 (514)
T 2gw1_A 276 MALIMADRN----------------------DSTEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKD----- 326 (514)
T ss_dssp HHHHHHTSS----------------------CCTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHH-----
T ss_pred HHHHHHHCC----------------------CHHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHH-----
Confidence 666555555 88888888888888888776 6788888888888888888766
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
|++++..+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++...|
T Consensus 327 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 327 ---FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp ---HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 8999999999889999999999889999999999999998887654 56778888999999999999887433
Q ss_pred CCCc----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 308 LDMP----ELVWKAYIDFEVG---QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 308 ~~~~----~~lw~~yi~~e~~---~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.... ..+|...+..+.. .|+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhcc
Confidence 2211 3477888888888 8999999999999998886 68888999999998888 9999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCH
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~ 404 (521)
.++.......+..+...+....+++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
T 2gw1_A 481 TMEEKLQAITFAEAAKVQQRIRSDP 505 (514)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCCH
Confidence 8754333333344443334444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-19 Score=176.23 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=222.0
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
..|+++.|..+ ++++ ...| +...+..++..+...|+++.|..+|++++...| .++.+|..++......|
T Consensus 34 ~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~---- 104 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVM--EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP---SNPVSWFAVGCYYLMVG---- 104 (330)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSTHHHHHHHHHHHHSC----
T ss_pred HcCCHHHHHHHHHHHH--HcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHhh----
Confidence 34556666666 6888 8888 688888888999999999999999999999855 35677888877766554
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
..++.|...|++++...|... ..|..++......|+.+.+... |++++..+|.
T Consensus 105 -----------------~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~ 157 (330)
T 3hym_B 105 -----------------HKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHDQAMAA--------YFTAAQLMKG 157 (330)
T ss_dssp -----------------SCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHTTT
T ss_pred -----------------hhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhccc
Confidence 168889999999999988876 7788888888888999888877 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC-------CCCcHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR-------LDMPEL 313 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~-------~~~~~~ 313 (521)
+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++...+ ......
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 999999999999999999999999999999988765 67778889999999999999987310 011246
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+|..++.++...|+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|.+.. .+.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~------~~~ 308 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTF------SVT 308 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHH------HHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchH------HHH
Confidence 888899999999999999999999999886 68899999999999998 99999999999999987642 222
Q ss_pred HHHH-HHHHcCCHHH
Q psy8681 393 AWKE-FEAQHGDDES 406 (521)
Q Consensus 393 ~~~~-fE~~~G~~~~ 406 (521)
.+.. ++...|+.+.
T Consensus 309 ~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 309 MLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHTTTTC---
T ss_pred HHHHHHHHHhCchhc
Confidence 2222 4556677654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-19 Score=181.38 Aligned_cols=272 Identities=14% Similarity=0.043 Sum_probs=229.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...+..+...|+++.|..+|++++...| .+..+|..++......| +++.|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~A 118 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENE----------------------NEQAA 118 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 466799999999999999999999999999865 46789999999998888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH----------HHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY----------LRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y----------~~~~~ 258 (521)
..+|++++...|.+. ..|..++.+....|+.+.+... |++++..+|.+..+|..+ +..+.
T Consensus 119 ~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 119 IVALQRCLELQPNNL--KALMALAVSYTNTSHQQDACEA--------LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCHHHHCC-------------------
T ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHccccHHHHHHH--------HHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 999999999999876 7899999999999999999877 999999999887777665 88888
Q ss_pred HcCCHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 259 DEGNADLIRETYERAIANIPP--TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
..|++++|...|++++...|. .. ++.++...|+++.|..+|++++...|. ...+|..++..+...|+++.|
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999998 43 677888999999999999999996554 367999999999999999999
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh------HHHHHHHHHHHHHHHHcCCH
Q psy8681 332 RELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEK------EERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 332 r~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~------~~~~~l~~~~~~fE~~~G~~ 404 (521)
...|++++...| ++.+|..++..+...|+ ++.|+..|++|+...|..... .....+|..+...-...|..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999999987 58999999999999998 999999999999999875321 01245777777777788999
Q ss_pred HHHHHHHhhCchhhhh
Q psy8681 405 ESRAKLNSKLPRRAKK 420 (521)
Q Consensus 405 ~~~~~v~~~~p~~v~k 420 (521)
+.+..+..+.+..+.+
T Consensus 344 ~~a~~~~~~~l~~~~~ 359 (365)
T 4eqf_A 344 ELFQAANLGDLDVLLR 359 (365)
T ss_dssp HHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999999888766643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=184.19 Aligned_cols=261 Identities=14% Similarity=0.126 Sum_probs=193.4
Q ss_pred cchhhHHH-HhhhccCCCC-Chh-------hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTT-------YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~-------~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
+++.|..+ ++++ ...| +.. .|..++.++...|+++.|...|++++...| . ..+|..++......
T Consensus 217 ~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~~~l~~~~~~~- 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLL--SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---T-PNSYIFLALTLADK- 289 (537)
T ss_dssp HHHHHHHHHHHHH--C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C-HHHHHHHHHHTCCS-
T ss_pred HHHHHHHHHHHHH--HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---C-chHHHHHHHHHHHh-
Confidence 44455555 5555 5555 222 244444455555555555555555555533 1 34444444444444
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
++++.|..+|++++...|.+. .+|..++.+....|+.+.+... |++++.
T Consensus 290 ---------------------~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~ 338 (537)
T 3fp2_A 290 ---------------------ENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKED--------FQKAQS 338 (537)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHH
T ss_pred ---------------------cCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHH
Confidence 489999999999999999876 7888889888899999998877 999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC----CCcH
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL----DMPE 312 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~----~~~~ 312 (521)
.+|.+..+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++...|. ....
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 9999999999999999999999999999999999988765 677888999999999999999873221 1111
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 313 LVWKAYIDFEVGQ----------GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 313 ~lw~~yi~~e~~~----------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..+...+..+... |+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCc
Confidence 2234445566667 999999999999999887 68899999999999998 999999999999999987
Q ss_pred hhhHHHHHHHH
Q psy8681 382 SEKEERVMLLE 392 (521)
Q Consensus 382 ~~~~~~~~l~~ 392 (521)
+.......++.
T Consensus 496 ~~~~~~~~~~~ 506 (537)
T 3fp2_A 496 DEKLQATTFAE 506 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhHHH
Confidence 65433333333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=184.35 Aligned_cols=252 Identities=13% Similarity=0.005 Sum_probs=216.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..+.|+++.|+.+ ++++ ..+| ++..|..++.++...|+++.|+.+|++++...| .+..+|..++......|
T Consensus 75 ~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g-- 147 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAI--LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMALAVSYTNTS-- 147 (365)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccc--
Confidence 6678889999999 9999 9999 799999999999999999999999999999965 46789999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHH----------HHHHHHHHcCChhhHHHHHHhhHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYK----------AYTIHEKKYGDRAGIEDVIVSKRK 233 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~----------~~~~~e~~~G~~~~a~~~i~~krr 233 (521)
+++.|..+|++++...|... ..+. .++......|+.+.+...
T Consensus 148 --------------------~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 199 (365)
T 4eqf_A 148 --------------------HQQDACEALKNWIKQNPKYK--YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL------ 199 (365)
T ss_dssp --------------------CHHHHHHHHHHHHHHCHHHH--CC-------------------CCHHHHHHHHH------
T ss_pred --------------------cHHHHHHHHHHHHHhCccch--HHHhhhccchHHHHHHHHHHhhhhhHHHHHHH------
Confidence 99999999999999988754 3333 336666677777878766
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 234 FQYEEEVNSNPN--NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 234 ~~ye~al~~~P~--~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
|++++..+|. ++.+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++...
T Consensus 200 --~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 --YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp --HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999999999999999999999865 6778889999999999999999966
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------------VKVWMNYAQFEMSSGDEDSVSLARRVFER 373 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------------~~vwi~ya~~e~~~g~~~~~~~AR~vfer 373 (521)
|. ...+|..++.++...|++++|+.+|++++...|. ..+|..++..+...|. .+.+..+..+
T Consensus 278 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PG--FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ---PELFQAANLG 352 (365)
T ss_dssp TT--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC---HHHHHHHHTT
T ss_pred CC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc---HHHHHHHHHh
Confidence 54 3678999999999999999999999999998643 6889999999999998 8888888887
Q ss_pred HHHHhc
Q psy8681 374 ANQALK 379 (521)
Q Consensus 374 Al~~~~ 379 (521)
++..+.
T Consensus 353 ~l~~~~ 358 (365)
T 4eqf_A 353 DLDVLL 358 (365)
T ss_dssp CCGGGT
T ss_pred hHHHHH
Confidence 665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=182.09 Aligned_cols=272 Identities=12% Similarity=-0.015 Sum_probs=224.5
Q ss_pred HHHhcCChhhhhh-hcC--------CCcH-----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 66 MEEKQGNKIGEEG-ANK--------ENEE-----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 66 ~e~~~gn~~~Ar~-ife--------~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
.+..+|+++.|.. .|+ .|.. ..+.|+++.|..+ ++++ ..+| ++..|..++..+...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHC
Confidence 3345667777777 554 2321 7788999999999 9999 9999 789999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
|+++.|...|++++...| .+..+|..++......| +++.|...|++++...|...
T Consensus 112 g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 112 EQELLAISALRRCLELKP---DNQTALMALAVSFTNES----------------------LQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp TCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTSTTTG
T ss_pred cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCcCcH
Confidence 999999999999999965 46788999999888888 99999999999999998765
Q ss_pred HHHHHH----------------HHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHH
Q psy8681 204 TAEIYK----------------AYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 204 ~~~l~~----------------~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~g~~~~ 265 (521)
..+. .+..+. ..|+.+.+... |++++..+|. +..+|..++.++...|++++
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 167 --HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL--------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp --GGCC---------------CTTHHHH-HHHHHHHHHHH--------HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH--------HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 2322 233333 56777777766 9999999999 89999999999999999999
Q ss_pred HHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 266 IRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
|...|++++...|.+. ++.++...|+++.|...|++++...|. ...+|..++..+...|+++.|...|++++.
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999865 577888999999999999999996553 367899999999999999999999999999
Q ss_pred cCC-C-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 341 RTV-H-----------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 341 ~~~-~-----------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..| + ..+|..++..+...|+ .+.|..++.+++..++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ---SDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTC---GGGHHHHHTTCHHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCC---hHhHHHhHHHHHHHHHH
Confidence 875 3 6899999999999999 99999999999887653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-19 Score=176.67 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=238.0
Q ss_pred HHhcccchhhHH-H-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Q psy8681 86 EERDKERDREEE-D-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~-~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~ 158 (521)
+.-.|+++.|.. . ++++ ...| + ...|...+..+...|+++.|..+|++++...| .+..+|..++....
T Consensus 35 ~~~~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGY--QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCC--CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHH--hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 345689999999 8 9888 7776 3 46799999999999999999999999999855 46788999999888
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..| +++.|..+|++++...|.+. .+|..++......|+.+.+... |++
T Consensus 110 ~~g----------------------~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~ 157 (368)
T 1fch_A 110 ENE----------------------QELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQACEI--------LRD 157 (368)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHH
T ss_pred HCc----------------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHH
Confidence 888 99999999999999999876 7888899999999999999877 999
Q ss_pred HHhhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHH
Q psy8681 239 EVNSNPNNYDAWF----------------DYLRLLEDEGNADLIRETYERAIANIPP--TK-----FAELESLLGDMERA 295 (521)
Q Consensus 239 al~~~P~~~~~W~----------------~y~~~~~~~g~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~A 295 (521)
++..+|.+...|. .++.++ ..|++++|...|++++...|. .. ++.++...|+++.|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999888775 344444 889999999999999999998 33 57788899999999
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 296 r~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
...|++++...|. ...+|..++.++...|+++.|..+|++++...| ++.+|..++..+...|+ ++.|...|+++
T Consensus 237 ~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a 311 (368)
T 1fch_A 237 VDCFTAALSVRPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 9999999996554 357899999999999999999999999999987 68899999999999998 99999999999
Q ss_pred HHHhccchhhHH-----HHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 375 NQALKASSEKEE-----RVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 375 l~~~~~~~~~~~-----~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
+...|.+..... ...+|..+...-...|+.+.+..+..+....+.
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999987621110 034566666666688999999998876654443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-18 Score=166.49 Aligned_cols=264 Identities=11% Similarity=-0.021 Sum_probs=227.7
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| ++..+...+..+...|+++.|..+|++++...|. +..++..++......|
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~---------------------- 70 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELN---------------------- 70 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHT----------------------
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhh----------------------
Confidence 4456 7889999999999999999999999999998664 4456666667666777
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+++.|..+|++++...|.+. .+|..++......| +.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRY--------LSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHHHHHH--------HHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHHHHHH--------HHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 99999999999999999887 78888898888999 88888877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+++|...|++++...|... ++.++...|+++.|...|++++...|. ...+|..++.++...|+++.|..+|++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999999999998754 577788999999999999999997664 367899999999999999999999999
Q ss_pred HHhcC---------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHH
Q psy8681 338 LLERT---------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407 (521)
Q Consensus 338 al~~~---------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~ 407 (521)
++... + .+.+|..++..+...|+ ++.|...|++++...|.+. ..+.....+-...|+.+.+
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQNA------STYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCccch------HHHHHHHHHHHHhccHHHH
Confidence 99874 2 47899999999999998 9999999999999988764 3455555555578999988
Q ss_pred HHHHhhC
Q psy8681 408 AKLNSKL 414 (521)
Q Consensus 408 ~~v~~~~ 414 (521)
.....++
T Consensus 290 ~~~~~~a 296 (330)
T 3hym_B 290 VDYFHTA 296 (330)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-18 Score=182.83 Aligned_cols=331 Identities=11% Similarity=0.013 Sum_probs=263.3
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEE 121 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~ 121 (521)
..|+. ..+...|+++.|..+|+ .|+. +...|+++.|... ++++ ..+| ++..|..++..+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL--ELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHh--ccChHHHHHHHHHHHHHH
Confidence 55666 77788999999999999 6765 7788999999999 9999 9999 7899999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCccc--------------------------------------------------------
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENL-------------------------------------------------------- 145 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~-------------------------------------------------------- 145 (521)
..|++++|...|++++...|....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999887542111
Q ss_pred --------------------cHHHHHHHHHHHHh---hh------hhccccch-----h-------------hHH--HHH
Q psy8681 146 --------------------DEKLFIAFAKFEEG---QR------EKYGDRAG-----I-------------EDV--IVS 176 (521)
Q Consensus 146 --------------------~~~lw~~~a~~e~~---~~------~~~~~~~~-----~-------------~~~--~l~ 176 (521)
+..+|...+..... .| ..+..... + ... .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12222222221111 11 00111111 0 011 122
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 177 ~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
..+...|+++.|..+|++++...|. . .+|..++......|+.+.+... |++++..+|.+..+|..++.+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-V--NSYIYMALIMADRNDSTEYYNY--------FDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHTSSCCTTGGGH--------HHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-H--HHHHHHHHHHHHCCCHHHHHHH--------HHHHhhcCcCCHHHHHHHHHH
Confidence 3345568999999999999999998 4 7888899999999999998877 999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+...|++++|...|++++...|.+. ++.+....|+++.|..+|+.++...|.+ ..+|..++..+...|+++.|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998765 5667778999999999999999865543 46888889999999999999
Q ss_pred HHHHHHHHhcCC-C------HHHHHHHHHHHHH---cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 332 RELHERLLERTV-H------VKVWMNYAQFEMS---SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 332 r~l~eral~~~~-~------~~vwi~ya~~e~~---~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
..+|++++...| + ..+|..++..+.. .|+ ++.|...|++++...|.+. ..+.....+-...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~ 462 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPRSE------QAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHh
Confidence 999999999864 2 3499999999998 887 9999999999999988764 3445555555688
Q ss_pred CCHHHHHHHHhhC
Q psy8681 402 GDDESRAKLNSKL 414 (521)
Q Consensus 402 G~~~~~~~v~~~~ 414 (521)
|+.+.+.....+.
T Consensus 463 g~~~~A~~~~~~a 475 (514)
T 2gw1_A 463 EDIDEAITLFEES 475 (514)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9998888777655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-18 Score=179.92 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=252.4
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFE 120 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e 120 (521)
..|+. ..+...|+++.|..+|+ .|++ +.+.|+++.|+.. ++++ ..+| ++..|..++.++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL--EIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCchHHHHHHHHHHH
Confidence 66666 78889999999999998 6765 7788999999999 9999 9999 799999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCcccc------------------------------------------------------
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLD------------------------------------------------------ 146 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~------------------------------------------------------ 146 (521)
...|+++.|...|+ ++...|+....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 66543321100
Q ss_pred -----------HHHHHHHHHHHH--------hhh------hh-------ccccchhh------HHHHHhhhhhhhhHHHH
Q psy8681 147 -----------EKLFIAFAKFEE--------GQR------EK-------YGDRAGIE------DVIVSKRKFQYEEHERA 188 (521)
Q Consensus 147 -----------~~lw~~~a~~e~--------~~~------~~-------~~~~~~~~------~~~l~~~~~~~~~~e~A 188 (521)
..++..+..+.. ..+ .. .+....++ ...++..+...++++.|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 001111111100 000 00 11110111 11122334556789999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
..+|++++...|. . ..|..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|..
T Consensus 263 ~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 263 QVLLQESINLHPT-P--NSYIFLALTLADKENSQEFFKF--------FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHHHHHHHHCCC-H--HHHHHHHHHTCCSSCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCC-c--hHHHHHHHHHHHhcCHHHHHHH--------HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999998 3 6788888888888999999877 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.++...|+++.|..+|+.++...|.+ ..+|..++.++...|+++.|...|++++...|
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999998765 6778889999999999999999965543 46888899999999999999999999998763
Q ss_pred -C------HHHHHHHHHHHHHc----------CCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHH
Q psy8681 344 -H------VKVWMNYAQFEMSS----------GDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406 (521)
Q Consensus 344 -~------~~vwi~ya~~e~~~----------g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~ 406 (521)
+ ...+...+..+... |+ ++.|...|++++...|.+. ..+..+..+-...|+.+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPRSE------QAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccHHH
Confidence 1 23355566666666 65 9999999999999999764 345555555668899988
Q ss_pred HHHHHhhC
Q psy8681 407 RAKLNSKL 414 (521)
Q Consensus 407 ~~~v~~~~ 414 (521)
+....++.
T Consensus 481 A~~~~~~a 488 (537)
T 3fp2_A 481 AIELFEDS 488 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=172.23 Aligned_cols=253 Identities=11% Similarity=-0.029 Sum_probs=214.6
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
...|+++.|..+ ++++ ...| ++..|..++..+...|+++.|...|++++...| .+..+|..++......|
T Consensus 32 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~--- 103 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVC--QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEH--- 103 (327)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT---
T ss_pred HHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC---
Confidence 345666666667 7999 8899 789999999999999999999999999999865 46788899998888888
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH--------------HH-HHHHcCChhhHHHHHH
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY--------------TI-HEKKYGDRAGIEDVIV 229 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~--------------~~-~e~~~G~~~~a~~~i~ 229 (521)
+++.|...|++++...|... .++..+ +. +....|+.+.+...
T Consensus 104 -------------------~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-- 160 (327)
T 3cv0_A 104 -------------------NANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL-- 160 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTSTTTT--TC--------------------CCTTSHHHHHHHHHH--
T ss_pred -------------------CHHHHHHHHHHHHHhCCccH--HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH--
Confidence 99999999999999988865 344333 22 23344555666655
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
|++++..+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++.
T Consensus 161 ------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 161 ------LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp ------HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765 57778899999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------------VKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------------~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
..|. ...+|..++.++...|+++.|...|++++...|. +.+|..++..+...|+ ++.|..+|
T Consensus 235 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 309 (327)
T 3cv0_A 235 INPG--YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR---PDLVELTY 309 (327)
T ss_dssp HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC---HHHHHHHT
T ss_pred cCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC---HHHHHHHH
Confidence 6554 3578888999999999999999999999998765 6799999999999998 99999999
Q ss_pred HHHHHHhccc
Q psy8681 372 ERANQALKAS 381 (521)
Q Consensus 372 erAl~~~~~~ 381 (521)
++++..+|..
T Consensus 310 ~~~l~~~~~~ 319 (327)
T 3cv0_A 310 AQNVEPFAKE 319 (327)
T ss_dssp TCCSHHHHHH
T ss_pred HHHHHhcchh
Confidence 9999888753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-17 Score=158.67 Aligned_cols=270 Identities=12% Similarity=0.017 Sum_probs=226.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...+..+...|++++|..+|++++...| .+..+|..++......| +++.|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~----------------------~~~~A 74 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP---EREEAWRSLGLTQAENE----------------------KDGLA 74 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 357799999999999999999999999999865 46788888888888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH--------------H
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY--------------L 254 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y--------------~ 254 (521)
...|++++...|.+. ..|..++......|+.+.+... |++++..+|.+...|..+ +
T Consensus 75 ~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 75 IIALNHARMLDPKDI--AVHAALAVSHTNEHNANAALAS--------LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTSTTTTTC-------------------
T ss_pred HHHHHHHHhcCcCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999876 7888888888999999999877 999999999998888877 5
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 255 R-LLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 255 ~-~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
. ++...|++++|...|++++...|... ++.++...|+++.|..+|++++...|. ...+|..++..+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--DAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH
Confidence 5 46677889999999999999998765 577788999999999999999996654 357899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH------HHHHHHHHHHHHHHc
Q psy8681 329 DKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE------RVMLLEAWKEFEAQH 401 (521)
Q Consensus 329 ~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~------~~~l~~~~~~fE~~~ 401 (521)
+.|..+|++++...| ++.+|..++..+...|+ ++.|...|++++...|....... ...++..+...-...
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 999999999999987 68899999999999998 99999999999999987321111 234566666666688
Q ss_pred CCHHHHHHHHhhCchhh
Q psy8681 402 GDDESRAKLNSKLPRRA 418 (521)
Q Consensus 402 G~~~~~~~v~~~~p~~v 418 (521)
|+.+.+..+..+.-...
T Consensus 300 g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TCHHHHHHHTTCCSHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999988877664333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=161.72 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=206.3
Q ss_pred hhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhh
Q psy8681 101 KDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179 (521)
Q Consensus 101 al~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~ 179 (521)
++ ...| ...+|..++.++...|++++|...|+++|...| .+..+|...+......|
T Consensus 89 ai--~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P---~~~~a~~~~g~~l~~~g------------------ 145 (382)
T 2h6f_A 89 QI--IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA---ANYTVWHFRRVLLKSLQ------------------ 145 (382)
T ss_dssp EE--CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT------------------
T ss_pred hh--hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc---cCHHHHHHHHHHHHHcc------------------
Confidence 45 6677 688999999999999999999999999999965 47889999999888887
Q ss_pred hhhhh-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 180 FQYEE-HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 180 ~~~~~-~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
. ++.|...|+++|...|.+. .+|...+.+....|+.+.+... |+++|..+|.++.+|..++.++.
T Consensus 146 ----~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~~~~~g~~~eAl~~--------~~kal~ldP~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 146 ----KDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQELEF--------IADILNQDAKNYHAWQHRQWVIQ 211 (382)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCccCHHHHHHHHHHHH
Confidence 7 9999999999999999987 8999999999999999999877 99999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHH-cCCHHHH-----HHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESL-LGDMERA-----RAIYELAISQPRLDMPELVWKAYIDFEVGQG- 326 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~-~g~~e~A-----r~ife~al~~~~~~~~~~lw~~yi~~e~~~g- 326 (521)
..|++++|...|++||...|.+. .+.+... .|..+.| ...|.+++...|. ...+|..++.++...|
T Consensus 212 ~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~--~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH--NESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTTTCG
T ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHccCc
Confidence 99999999999999999999876 4555666 5654677 5889999997664 3678988888888877
Q ss_pred -ChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc-----h-hhHHHHHHHHHH-HHHhccc
Q psy8681 327 -ERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE-----D-SVSLARRVFERA-NQALKAS 381 (521)
Q Consensus 327 -~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~-----~-~~~~AR~vferA-l~~~~~~ 381 (521)
++++|...+.++ ...| ++.++..++.++...|.. + .+++|..+|+++ ++..|..
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 689999999887 6665 678888888888876411 1 268999999999 8888864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=163.19 Aligned_cols=249 Identities=10% Similarity=0.027 Sum_probs=208.1
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCC-
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGF- 125 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~- 125 (521)
.+|.+.|.. .+|.. .++...|+++.|...| ++++ ..+| +..+|...+.++...|+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~------------------~~al--~l~P~~~~a~~~~g~~l~~~g~d 147 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT------------------RDAI--ELNAANYTVWHFRRVLLKSLQKD 147 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHH------------------HHHH--HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHH------------------HHHH--HhCccCHHHHHHHHHHHHHcccC
Confidence 467889998 88877 6666555555555554 5999 9999 79999999999999996
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHH
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTA 205 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~ 205 (521)
+++|...|++|+...| .+..+|...+......| +++.|...|+++|...|.+.
T Consensus 148 ~~eAl~~~~~al~l~P---~~~~a~~~~g~~~~~~g----------------------~~~eAl~~~~kal~ldP~~~-- 200 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLR----------------------DPSQELEFIADILNQDAKNY-- 200 (382)
T ss_dssp HHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CCTTHHHHHHHHHHHCTTCH--
T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHhCccCH--
Confidence 9999999999999965 47889999999998888 99999999999999999987
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCc
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-EGNADLI-----RETYERAIANIPP 279 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~A-----r~~~erAl~~~P~ 279 (521)
..|...+.+....|+.+.+... |+++|..+|.+..+|..++.++.. .|..++| ...|++|+...|.
T Consensus 201 ~a~~~lg~~~~~~g~~~eAl~~--------~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 201 HAWQHRQWVIQEFKLWDNELQY--------VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCChHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 8899999999999999999877 999999999999999999999999 5665777 5899999999998
Q ss_pred hh-----HHHHHHHcC--CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HhcC
Q psy8681 280 TK-----FAELESLLG--DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG--------E-RDKVRELHERL-LERT 342 (521)
Q Consensus 280 ~~-----~a~le~~~g--~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g--------~-~~~Ar~l~era-l~~~ 342 (521)
+. ++.+....| ++++|...+..+ ...+. ...++..+++++...| + +++|..+|+++ ++..
T Consensus 273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~--~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS--SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC--CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC--CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 76 345555667 689999999887 54433 3567777777777764 3 58999999999 8888
Q ss_pred C-CHHHHHHHHHHHHH
Q psy8681 343 V-HVKVWMNYAQFEMS 357 (521)
Q Consensus 343 ~-~~~vwi~ya~~e~~ 357 (521)
| ....|..++..+..
T Consensus 350 P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 7 67899888776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=147.25 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=146.6
Q ss_pred C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 108 S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 108 P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
| ++..|..++..+...|++++|...|++++...| .++.+|..++......| +++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----------------------~~~ 56 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLG----------------------LVN 56 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTT----------------------CHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHH
Confidence 5 788999999999999999999999999999855 57889999999998888 999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-----------CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-----------GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-----------G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.|...|++++...|.+. ..|..++.+.... |+.+.+... |++++..+|.+..+|..++.
T Consensus 57 ~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~--------~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 57 PALENGKTLVARTPRYL--GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV--------LKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH--------HHHHHHhCcccHHHHHHHHH
Confidence 99999999999999887 7788888887777 888888766 99999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
++...|++++|...|++|+... .+ ..+|..++..+...|+++.|...|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~-~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE-DT-------------------------------PEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CC-------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcc-cc-------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999998888888888888765 32 234455555555556666666666
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 336 ERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 336 eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
++++...| ++.+|..++..+...|+ ++.|...|+++.
T Consensus 175 ~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~ 212 (217)
T 2pl2_A 175 AKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence 66666554 45555556655555555 566666655553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=146.62 Aligned_cols=183 Identities=15% Similarity=0.033 Sum_probs=148.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
++.+|..++......| ++++|...|++++...|.+. ..|..++......|+.+.+.
T Consensus 4 ~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~ 59 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALG----------------------RYDAALTLFERALKENPQDP--EALYWLARTQLKLGLVNPAL 59 (217)
T ss_dssp CCHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHH
Confidence 5567788888777777 99999999999999999987 78889999999999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.. |++++..+|.++.+|..++.++...+.. .+. .....|+++.|...|++++..
T Consensus 60 ~~--------~~~al~~~P~~~~a~~~lg~~~~~~~~~-------------~~~-----~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 60 EN--------GKTLVARTPRYLGGYMVLSEAYVALYRQ-------------AED-----RERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHHHHT-------------CSS-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHhCCCcHHHHHHHHHHHHHhhhh-------------hhh-----hcccccCHHHHHHHHHHHHHh
Confidence 77 9999999999999999999998877100 000 011124444444445555443
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.|. ...+|..++..+...|++++|+..|++++....++.+|..++..+...|+ ++.|...|++++...|.+..
T Consensus 114 ~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 114 NPR--YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHH
T ss_pred Ccc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChH
Confidence 332 35688888899999999999999999999987778999999999999999 99999999999999998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-16 Score=148.47 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=179.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
++.+..+|..+...|+++.|..+|++++...|. +..+|..++......| +++.|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~----------------------~~~~A~ 57 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELA----------------------KYDLAQ 57 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHh----------------------hHHHHH
Confidence 456778888888888888888888888887653 4456777777777776 888888
Q ss_pred HHHHHHHhcCChhh--HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDR--TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~--~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
..|++++. .|.+. ....|..++......|+.+.|... |++++..+|.+..+|..++.++...|++++|.
T Consensus 58 ~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 58 KDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ--------YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH--------HHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 88888888 44322 124477777777788888888766 88888888888888888888888888888888
Q ss_pred HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q psy8681 268 ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE---RDKVRELHERLL 339 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~---~~~Ar~l~eral 339 (521)
..|++++...|... ++......++++.|...|++++...|.+ ...|...+..+...|+ ++.|...|++++
T Consensus 129 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 88888888877665 3323334568888888888888865543 4566666677777777 888999999999
Q ss_pred hcC---CC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 340 ERT---VH------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 340 ~~~---~~------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
... |. ..+|..++.++...|+ +++|...|++++...|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCccHH
Confidence 875 33 2578889999998888 9999999999999999875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-15 Score=146.28 Aligned_cols=246 Identities=8% Similarity=0.031 Sum_probs=207.3
Q ss_pred hcccchhhHHH-HhhhccCCCC-C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
-.|++..|+.. ++.. ...| + ......+++.+...|+++.|...++.. .+.....+..++.+....+
T Consensus 11 ~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~~~~--- 79 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLASHS--- 79 (291)
T ss_dssp HTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHHCST---
T ss_pred HHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHcCCC---
Confidence 36888888888 8888 7778 3 467788899999999999999866542 2234556667777777776
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+.+.|...|+.++.. .|.+. .++...+......|+.+.|... |++
T Consensus 80 -------------------~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~~~g~~~~Al~~--------l~~---- 126 (291)
T 3mkr_A 80 -------------------RRDAIVAELDREMSRSVDVTNT--TFLLMAASIYFYDQNPDAALRT--------LHQ---- 126 (291)
T ss_dssp -------------------THHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHHHTTCHHHHHHH--------HTT----
T ss_pred -------------------cHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HhC----
Confidence 899999999999875 58776 6788888888899999988876 555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|.+..+|..++.++...|++++|...|++++...|.+. |..+....|+++.|..+|++++...|. ...+|
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--~~~~~ 203 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--TLLLL 203 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--CHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--cHHHH
Confidence 89999999999999999999999999999999998865 334444569999999999999996554 46789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVS-LARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~-~AR~vferAl~~~~~~~~ 383 (521)
...+..+...|++++|...|++++...| ++.+|..++.+....|. .. .+..++++++...|+++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999999998 79999999999999887 65 578999999999999864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-16 Score=148.78 Aligned_cols=237 Identities=10% Similarity=-0.018 Sum_probs=195.4
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~~~ 163 (521)
...|+++.|+.+ ++++ ...| ++..|..++..+...|+++.|...|++++. .|.++. ...+|..++......|
T Consensus 14 ~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~-- 88 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLE--AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG-- 88 (272)
T ss_dssp HTTTCHHHHHHHHHHHH--HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT--
T ss_pred HHhcCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc--
Confidence 346777788888 8999 9999 688999999999999999999999999999 443332 2667888998888888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|...|+++++..|... .+|..++.+....|+.+.+... |++++..+
T Consensus 89 --------------------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~ 138 (272)
T 3u4t_A 89 --------------------QDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQY--------MEKQIRPT 138 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HGGGCCSS
T ss_pred --------------------cHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHH--------HHHHhhcC
Confidence 99999999999999999887 7899999999999999999877 99999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC---HHHHHHHHHHHHcCC---CCC---
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD---MERARAIYELAISQP---RLD--- 309 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~---~e~Ar~ife~al~~~---~~~--- 309 (521)
|.+..+|..++......+++++|...|++++...|... .+.+...+|+ ++.|...|++++... +..
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 99999999999555556699999999999999999865 4666677788 888999999998742 110
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 310 MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 310 ~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
....+|..++.++...|++++|...|++++...| ++.+|-....+....
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 0125777788888999999999999999999998 577777666655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-15 Score=140.39 Aligned_cols=223 Identities=14% Similarity=0.032 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|...|..+...|+++.|..+|++++... .++.+|..++......| +++.|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~----------------------~~~~A~ 58 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKG----------------------EYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcc----------------------cHHHHH
Confidence 5789999999999999999999999999985 35778899998888888 999999
Q ss_pred HHHHHHHhcCChhh-----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy8681 190 VIYKYALDHIPKDR-----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~ 264 (521)
..|++++...|... ...+|..++......|+.+.+... |++++..+|. +..+...|+++
T Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~--------~~~~~~~~~~~ 122 (258)
T 3uq3_A 59 STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY--------YQKSLTEHRT--------ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCCC--------HHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHH--------HHHHHhcCch--------hHHHHHHhHHH
Confidence 99999999877641 136888888888899999999877 9999999887 34456667889
Q ss_pred HHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 265 LIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 265 ~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
+|...|++++...|... ++.+....|+++.|...|++++...|. ...+|...+..+...|+++.|...|++++
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999988765 677788999999999999999996554 35789899999999999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 340 ERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 340 ~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
...| ++.+|..++..+...|+ ++.|...|++++...|
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDA 238 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhCh
Confidence 9987 68999999999999998 9999999999999983
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-16 Score=161.01 Aligned_cols=291 Identities=12% Similarity=0.045 Sum_probs=186.4
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcC----------CC---cH----------HHh--cccchhhHHH-HhhhccCC
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANK----------EN---EE----------EER--DKERDREEED-ERKDEGDR 106 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife----------~P---~~----------e~r--~g~~e~Ar~~-eral~~~~ 106 (521)
.|++ ..|.. .++..+|+++.|...|+ .| .. .+. .++++.|+.. ++++ ..
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal--~~ 167 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--EK 167 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--HH
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH--Hh
Confidence 3444 55655 67778888888877775 11 11 122 3467777777 7777 77
Q ss_pred CC-ChhhHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQ---NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQY 182 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~---~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (521)
.| ++..|..++..... .+..+.|...|++|+...| .+..++..++......+ ...
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p---~~~~~~~~l~~~~~~~~------------------~~~ 226 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP---DNQYLKVLLALKLHKMR------------------EEG 226 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS---SCHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC---cchHHHHHHHHHHHHHH------------------hhh
Confidence 77 56777776666433 4566777777777777754 34445544443222211 111
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-- 260 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-- 260 (521)
+.++.|..+|++++...|... .++..++.+....|+.+.+... |++++..+|.+..+|..++..+...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIEL--------LKKALEYIPNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHH--------HHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 367788899999998888876 7788888888888988888876 8999999999998888888765432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCC-cHHHHHH
Q psy8681 261 -----------------GNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDM-PELVWKA 317 (521)
Q Consensus 261 -----------------g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~-~~~lw~~ 317 (521)
+..+.|...|++++...|... .+.++...|+++.|...|++++...+.+. ...++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 235678888888888877754 67778888999999999999887543221 1234555
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 318 YIDF-EVGQGERDKVRELHERLLERTV-------------------------HVKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 318 yi~~-e~~~g~~~~Ar~l~eral~~~~-------------------------~~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
|+.+ +...|++++|...|++++...| ++.+|..++..+...|+ +++|...|
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y 453 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDS 453 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 6554 3467888888888888876643 35677778887777776 89999999
Q ss_pred HHHHHHhccch
Q psy8681 372 ERANQALKASS 382 (521)
Q Consensus 372 erAl~~~~~~~ 382 (521)
++|++..|.++
T Consensus 454 ~kALe~~~~~p 464 (472)
T 4g1t_A 454 ERGLESGSLIP 464 (472)
T ss_dssp -----------
T ss_pred HHHHhcCCCCC
Confidence 99998776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=141.45 Aligned_cols=210 Identities=16% Similarity=0.100 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|...+..+...|+++.|..+|++++...| .+..+|..++......| +++.|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A 76 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVN----------------------ELERA 76 (243)
T ss_dssp --------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 467788888888888888888888888888754 35677888887777777 88888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
..+|++++...|... .+|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 77 LAFYDKALELDSSAA--TAYYGAGNVYVVKEMYKEAKDM--------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcCCcch--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 888888888888765 6777777777788888888766 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.++...|+++.|...|+.++...+. ...+|..++.++...|+++.|...|++++...|
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888777543 344455556666666666666554332 234566666666666666666666666666655
Q ss_pred -CHHHHHHHHHHH
Q psy8681 344 -HVKVWMNYAQFE 355 (521)
Q Consensus 344 -~~~vwi~ya~~e 355 (521)
++.+|..++.+.
T Consensus 225 ~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 225 DHMLALHAKKLLG 237 (243)
T ss_dssp TCHHHHHHHTC--
T ss_pred chHHHHHHHHHHH
Confidence 455555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=152.17 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=213.6
Q ss_pred hcccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|... ++++ ...| + ..+|..++..+...|+++.|...|++++.... +.+....++..++....
T Consensus 21 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34556666666 6888 7777 4 46899999999999999999999999998742 22233567777777777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...|... ...++..++.+....|+
T Consensus 99 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 99 VLG----------------------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HcC----------------------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 777 99999999999998866432 13467777777777787
Q ss_pred ------hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------
Q psy8681 221 ------RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------- 281 (521)
Q Consensus 221 ------~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------- 281 (521)
.+.+... |++++.. .|....+|..++.++...|++++|...|++++...|...
T Consensus 157 ~~a~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 157 EEVRDALQAAVDF--------YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6666655 7777765 334456899999999999999999999999998755432
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VK 346 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~ 346 (521)
++.++...|+++.|...|++++...+. + ....++...+.++...|+++.|...|++++...+ + ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 567788999999999999999873211 1 1145677778889999999999999999998742 2 66
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~ 403 (521)
+|..++.++...|+ ++.|...|++|+...+..++.......+..+..+-...|+
T Consensus 309 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 309 ACWSLGNAYTALGN---HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 88889999999998 9999999999999987765544444444444444444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-15 Score=139.13 Aligned_cols=211 Identities=16% Similarity=0.052 Sum_probs=177.1
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc----HHHHHHHHHHHHhhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD----EKLFIAFAKFEEGQRE 162 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~----~~lw~~~a~~e~~~~~ 162 (521)
..|+++.|..+ ++++ ...+++..|..++..+...|+++.|...|++++...|....+ ..+|..++......+
T Consensus 17 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 93 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAW--ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG- 93 (258)
T ss_dssp HTTCHHHHHHHHHHHH--HHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HhccHHHHHHHHHHHH--HhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc-
Confidence 34555566666 6888 555778999999999999999999999999999986532111 578888888888887
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+++.|...|++++...|.. .++.. .|+.+.+... |++++..
T Consensus 94 ---------------------~~~~A~~~~~~a~~~~~~~---~~~~~-------~~~~~~a~~~--------~~~~~~~ 134 (258)
T 3uq3_A 94 ---------------------DLKKTIEYYQKSLTEHRTA---DILTK-------LRNAEKELKK--------AEAEAYV 134 (258)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCCCH---HHHHH-------HHHHHHHHHH--------HHHHHHC
T ss_pred ---------------------cHHHHHHHHHHHHhcCchh---HHHHH-------HhHHHHHHHH--------HHHHHHc
Confidence 9999999999999998874 23333 3444555554 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|+.++...|. ...+|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 212 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIR 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 999999999999999999999999999999999999865 577788999999999999999996554 3678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+.++...|+++.|...|+++++..
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-14 Score=145.46 Aligned_cols=297 Identities=12% Similarity=0.032 Sum_probs=209.7
Q ss_pred HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 65 AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
.++..+|+++.|...|+ .|..+ ........+| ...+|..+|.++...|++++|...|++++...+.
T Consensus 59 ~~~~~~G~~~eAl~~~~------------kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLR------------KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHTTCHHHHHHHHH------------HHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH------------HHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 57777888888877764 55555 4332114567 5788999999999999999999999999987431
Q ss_pred -----ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH--
Q psy8681 143 -----ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE-- 215 (521)
Q Consensus 143 -----~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e-- 215 (521)
.+..+.++...+......+ .+.+++|...|++|+...|.+. .++..++...
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~--------------------~~~y~~A~~~~~kal~~~p~~~--~~~~~~~~~~~~ 184 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCG--------------------GNQNERAKVCFEKALEKKPKNP--EFTSGLAIASYR 184 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHC--------------------TTHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHc--------------------cccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 1223455544433222221 1289999999999999999886 5666665543
Q ss_pred -HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCchh-----HHHH
Q psy8681 216 -KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIPPTK-----FAEL 285 (521)
Q Consensus 216 -~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P~~~-----~a~l 285 (521)
...|..+.+... |++++..+|.+..+|..++..+.. .|+.++|..+|++++...|... .+.+
T Consensus 185 l~~~~~~~~al~~--------~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 185 LDNWPPSQNAIDP--------LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHSCCCCCTHHH--------HHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hcCchHHHHHHHH--------HHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 345666666655 999999999999998888766554 4578899999999999988865 5777
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHhcCC-CH
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG-------------------QGERDKVRELHERLLERTV-HV 345 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~-------------------~g~~~~Ar~l~eral~~~~-~~ 345 (521)
+...|+++.|...|++++...|.+ ..+|...+..+.. .+.++.|...|++++...| ++
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHcCchHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh
Confidence 889999999999999999865543 4455544443322 2346788888999988876 57
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEF-EAQHGDDESRAKLN 411 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~f-E~~~G~~~~~~~v~ 411 (521)
.+|..++......|+ +++|...|++|+...+.+.. ...++..+..+ +...|+.+.+....
T Consensus 335 ~~~~~lg~~~~~~~~---~~~A~~~~~kaL~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 335 RVCSILASLHALADQ---YEEAEYYFQKEFSKELTPVA---KQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp CCHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCCHHH---HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhhhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788899999999888 99999999999988765432 22334444433 23457766554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=136.66 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|++
T Consensus 38 ~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAF--------YDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp ----CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 99999999999999999876 7888888888899999999877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
+.|...|++++...|... ++.++...|+++.|...|++++...+. ...+|..++.++...|+++.|..+|+++
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998765 577788999999999999999996553 3578888999999999999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+...| ++.+|..++.++...|+ ++.|...|++++...|++.
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred HHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99986 68899999999999998 9999999999999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=132.01 Aligned_cols=203 Identities=12% Similarity=-0.010 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|..++..+...|+++.|..+|++++...| ....+|..++......| +++.|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A~ 91 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEM----------------------EPKLAD 91 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 67888999999999999999999999988854 35678888888877777 888898
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
.+|++++...|... .+|..++......|+.+.+... |++++. .+|.+..+|..++..+...|++++|.
T Consensus 92 ~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 92 EEYRKALASDSRNA--RVLNNYGGFLYEQKRYEEAYQR--------LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCcCcH--HHHHHHHHHHHHHhHHHHHHHH--------HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888765 6777777777788888877766 888887 67777888888888888888888888
Q ss_pred HHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 268 ETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 268 ~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
..|++++...|... .+|..++.++...|+++.|..+|++++...| +..
T Consensus 162 ~~~~~~~~~~~~~~-------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 162 EYFEKSLRLNRNQP-------------------------------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp HHHHHHHHHCSCCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHhcCcccH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 88888777766532 3344444444445555555555555554443 344
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+|..++.++...|+ .+.|..+|++++...|.+
T Consensus 211 ~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 211 SLLLGIRLAKVFED---RDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCC
Confidence 44444554444444 555555555555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=138.21 Aligned_cols=217 Identities=11% Similarity=-0.016 Sum_probs=113.1
Q ss_pred cccchhhHHH-HhhhccCCC----C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 89 DKERDREEED-ERKDEGDRD----S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~----P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
.|+++.|... ++++ ... | ++..|..++..+...|+++.|...|++++...| .+..+|..++......|
T Consensus 18 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~- 91 (275)
T 1xnf_A 18 TLQQEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAG- 91 (275)
T ss_dssp CHHHHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcc-
Confidence 3555666666 6666 442 2 245566666666666666666666666666543 24555666665555555
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..
T Consensus 92 ---------------------~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~a~~~ 140 (275)
T 1xnf_A 92 ---------------------NFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDD--------LLAFYQD 140 (275)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHh
Confidence 66666666666666655554 4555555555555665555544 6666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCC--CcHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLD--MPELVWK 316 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~--~~~~lw~ 316 (521)
+|.+...+..+. +....|++++|...|.+++...|+.. .+.+....++.+.|...|..++...+.. ....+|.
T Consensus 141 ~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 141 DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219 (275)
T ss_dssp CTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHH
Confidence 665554333332 22334555555555555555554433 2223333444455555555554432100 0023444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
..+.++...|++++|...|++++...|
T Consensus 220 ~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 444445555555555555555555444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-15 Score=144.82 Aligned_cols=259 Identities=12% Similarity=-0.021 Sum_probs=197.8
Q ss_pred hcccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|+.+ ++++ ...| + ..+|..++..+...|+++.|...|++++.... ..+....++..++....
T Consensus 17 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 44566666666 7888 7778 4 47899999999999999999999999998732 22223567777777777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...|... ...++..++.+....|+
T Consensus 95 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 95 VLG----------------------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred Hcc----------------------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 777 99999999999998755431 12466667777777777
Q ss_pred ------hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------
Q psy8681 221 ------RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------- 281 (521)
Q Consensus 221 ------~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------- 281 (521)
.+.+... |++++.. .|....++..++..+...|++++|...|++++...|...
T Consensus 153 ~~a~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 153 EDVRNALQAAVDL--------YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 5555544 7777665 233456889999999999999999999999998755422
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VK 346 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~ 346 (521)
++.++...|+++.|...|+.++...+. + ....++...+.++...|+++.|...|++++...+ + ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 567788899999999999999873211 1 1145677778889999999999999999998753 2 55
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+|..++..+...|+ ++.|...|++|+...+..
T Consensus 305 ~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 305 ACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhh
Confidence 78889999999998 999999999999987753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-14 Score=135.50 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=189.3
Q ss_pred HcCChhHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q psy8681 122 QNGFVSGARKVYERAVEFFGEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP 200 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P 200 (521)
..|+++.|...|++++...+.. +....+|..++......| +++.|...|++++...|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~al~~~~ 74 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG----------------------LRALARNDFSQALAIRP 74 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHHcCC
Confidence 3468899999999999874321 235778888888888887 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 201 ~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
... .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|++++|...|++++...|..
T Consensus 75 ~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 75 DMP--EVFNYLGIYLTQAGNFDAAYEA--------FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp CCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 876 7899999999999999999877 999999999999999999999999999999999999999999987
Q ss_pred h----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHH
Q psy8681 281 K----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-----VKVWMNY 351 (521)
Q Consensus 281 ~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~y 351 (521)
. +..+....|+++.|...|..++...+.+. ..|. .+.+....++.+.|...|.+++...+. +.+|..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch--HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 6 33445667999999999999988544332 2343 556667788899999999999887642 6889999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+.++...|+ ++.|...|++++...|.+
T Consensus 222 a~~~~~~g~---~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 222 GKYYLSLGD---LDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCC---HHHHHHHHHHHHhCCchh
Confidence 999999998 999999999999998865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=128.20 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=142.0
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| ++..|..++..+...|+++.|..+|++++...| .+..+|..++......| ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~----------------------~~ 58 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP---KNELAWLVRAEIYQYLK----------------------VN 58 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcC----------------------Ch
Confidence 45 577888888888888888888888888888755 35677777777777777 88
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.|..+|++++...|.+. .+|..++.+.... |+.+.+... |++++. .+|.+..+|..++..+...|+
T Consensus 59 ~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAESMAY--------FDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHHHHHH--------HHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCcHHHHHHH--------HHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 888888888888877765 6777777777777 887777766 788877 556667788888888877777
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 263 ADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
+++|...|++++...|.+. .+|..++..+...|+++.|..+|++++...
T Consensus 129 ~~~A~~~~~~~~~~~~~~~-------------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFP-------------------------------PAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCH-------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc-------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777666432 344444555555555555555555555554
Q ss_pred C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 343 V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 343 ~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
| ++.+|...+.++...|+ .+.|..+++.++...|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCC
Confidence 4 34444444444455554 555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=131.57 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++++...|...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVP--------LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6677777777788888888776 8888888888888888888888888888899999988888888654
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAIS--QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS 357 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~--~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~ 357 (521)
++.++...|+++.|..+|++++. ..+ ....+|..++..+...|+++.|..+|++++...| ++.+|..++..+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYP--ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 56677788999999999999888 333 2467888888999999999999999999999887 68899999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 358 SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 358 ~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
.|+ ++.|..+|++++...|.+.. ....+...+........-....+.+....|...
T Consensus 188 ~g~---~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 188 ERE---YVPARQYYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp TTC---HHHHHHHHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred cCC---HHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 998 99999999999998887643 223333333333222222334455555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=147.34 Aligned_cols=259 Identities=10% Similarity=-0.043 Sum_probs=203.3
Q ss_pred hcccchhhHHH-HhhhccCCCC-Ch----hhHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DT----TYGMRELVFEEQNGFVSGARKVYERAVEFF---GEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~----~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~---~~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|+.+ ++++ ...| +. .+|..++.++...|+++.|...|++++... ++.+....+|..++.+..
T Consensus 60 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAI--QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHH--HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 34556666666 6888 7788 43 589999999999999999999999999873 222234667777888777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...+. .....++..++.+....|+
T Consensus 138 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 138 VMG----------------------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HCC----------------------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 777 999999999999987432 1123577777777778888
Q ss_pred ---hhhHHHHHHhhHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------
Q psy8681 221 ---RAGIEDVIVSKRKFQYEEEVNSN------PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------- 281 (521)
Q Consensus 221 ---~~~a~~~i~~krr~~ye~al~~~------P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------- 281 (521)
.+.+... |++++... |....+|..++.++...|++++|...|++++...|...
T Consensus 196 ~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 196 KEALTRAVEF--------YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666554 77777653 33456899999999999999999999999999766432
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------CHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-------HVKVWM 349 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-------~~~vwi 349 (521)
++.++...|+++.|...|++++...+. + ....+|..++.++...|+++.|..+|++++...+ ...++.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 567788999999999999999873221 1 1246777888889999999999999999998752 255788
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.++.++...|+ ++.|...|++|+...+..
T Consensus 348 ~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 348 SLGNAHSAIGG---HERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHHHhhc
Confidence 89999999998 999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-14 Score=126.35 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.|... |++++..+|+++.+|..++.++...|+++.|...+.+++...|...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRA--------YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 7899999999999999999977 9999999999999999999999999999999999999999999866
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g 359 (521)
.+.+....++++.|...+.+++...|. ...+|...+..+...|++++|...|+++++..| ++.+|..++..+...|
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 567788899999999999999996664 367888999999999999999999999999997 6899999999999999
Q ss_pred CchhhHHHHHHHHHHHHHhccc
Q psy8681 360 DEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~ 381 (521)
+ +++|...|++|++..|++
T Consensus 156 ~---~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 L---RDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp C---HHHHHHHHHHHHHTTHHH
T ss_pred C---HHHHHHHHHHHHhCCccC
Confidence 8 999999999999998864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=137.64 Aligned_cols=272 Identities=10% Similarity=-0.002 Sum_probs=213.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
...|...|..+...|+++.|..+|++++...|.++.. ..++..++......| +++.|
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A 62 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH----------------------DYAKA 62 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 4568888999999999999999999999986643211 466777777777777 99999
Q ss_pred HHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~ 258 (521)
...|++++...+. .....++..++......|+.+.+... |++++...|.. ..++..++.++.
T Consensus 63 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC--------CQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 9999999876321 12236777888888899999999877 88888875543 348899999999
Q ss_pred HcCC--------------------HHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 259 DEGN--------------------ADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 259 ~~g~--------------------~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
..|+ ++.|...|++++...+... ++.++...|+++.|...|++++...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999887632211 56777889999999999999987321
Q ss_pred C----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 308 L----DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 308 ~----~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. .....+|..++.++...|+++.|..+|++++...+ + ..++..++..+...|+ ++.|...|++|+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLA 291 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 1 01134777778888999999999999999998753 1 6678889999999998 9999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..+..+.......++.....+-...|+.+.+.....+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 98776554445556666676777889999888887665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-14 Score=142.81 Aligned_cols=272 Identities=12% Similarity=-0.000 Sum_probs=214.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
...+...+..+...|+++.|+..|++++...|.++. ...+|..++......| +++.|
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g----------------------~~~~A 105 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG----------------------DYNKA 105 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 556778899999999999999999999998664321 1357777888777777 99999
Q ss_pred HHHHHHHHhcCC----hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIP----KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P----~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~ 258 (521)
...|++++.... ......++..++.+....|+.+.+... |++++.. .|....+|..++.++.
T Consensus 106 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 106 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC--------CERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 999999998721 112236788888888899999999877 8888887 4566779999999999
Q ss_pred HcCC-----------------HHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCC--
Q psy8681 259 DEGN-----------------ADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRL-- 308 (521)
Q Consensus 259 ~~g~-----------------~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~-- 308 (521)
..|+ ++.|...|++++...+... ++.++...|+++.|...|++++...+.
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 9999 9999999999987643211 567788999999999999999874211
Q ss_pred C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 309 D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 309 ~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+ ....++..++.++...|+++.|..+|++++...+. ..+|..++.++...|+ ++.|...|++++...+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 1 11236777788899999999999999999987531 5678889999999998 9999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..++.......+..+..+-...|+.+.+.....+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76544444556666666666889988876666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-14 Score=126.16 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++.+|..+|..+...|++++|...|+++++..| .+..+|..++......| +++.|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~----------------------~~~~a 58 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---NNVETLLKLGKTYMDIG----------------------LPNDA 58 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 467788888888888888888888888888854 46777888888777777 88888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...+..++...|... ..+..++.+....++.+.+... |.+++..+|.+..+|..++..+...|++++|..
T Consensus 59 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 59 IESLKKFVVLDTTSA--EAYYILGSANFMIDEKQAAIDA--------LQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCchhH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHhCCchhHHH
Confidence 888888888887766 6677777777777877777765 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|.+. .+|...+..+...|++++|...|+++++..|
T Consensus 129 ~~~~~l~~~p~~~-------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 129 AYEKTISIKPGFI-------------------------------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhcchhh-------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 8888777776532 3455555555555555555555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-13 Score=132.37 Aligned_cols=234 Identities=7% Similarity=-0.038 Sum_probs=153.5
Q ss_pred hcCChhhhhhhcC-----CCcH-----------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE-----------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..|++..|+..++ .|++ ++.+|+++.|+.. +.. ..|.......++.++...|+.+.|..
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4566666666554 2332 5566666666655 431 12356666777777777777777777
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY 211 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~ 211 (521)
.|++++.... +|.++.+++.++......| +++.|..+|++ |.+. .++...
T Consensus 87 ~l~~ll~~~~-~P~~~~~~~~la~~~~~~g----------------------~~~~Al~~l~~-----~~~~--~~~~~l 136 (291)
T 3mkr_A 87 ELDREMSRSV-DVTNTTFLLMAASIYFYDQ----------------------NPDAALRTLHQ-----GDSL--ECMAMT 136 (291)
T ss_dssp HHHHHHHSCC-CCSCHHHHHHHHHHHHHTT----------------------CHHHHHHHHTT-----CCSH--HHHHHH
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHHHHCC----------------------CHHHHHHHHhC-----CCCH--HHHHHH
Confidence 7777775410 1235666777777666666 77777777766 4443 566666
Q ss_pred HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH
Q psy8681 212 TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD--YLRLLEDEGNADLIRETYERAIANIPPTK-----FAE 284 (521)
Q Consensus 212 ~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~--y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~ 284 (521)
+.+..+.|+.+.|... |++++..+|.+....+. ++.+....|++++|..+|++++...|.+. .+.
T Consensus 137 ~~~~~~~g~~~~A~~~--------l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 137 VQILLKLDRLDLARKE--------LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH--------HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 6667777777777665 77777777776533332 33444455677777777777777777654 455
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCHH
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDK-VRELHERLLERTVHVK 346 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~-Ar~l~eral~~~~~~~ 346 (521)
+...+|+++.|...|++++...|. ...+|..++.+....|+.+. +..++++++...|+..
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 566777777777777777775554 35678888888888898865 6789999999988543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-13 Score=125.27 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++++...|...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATAS--------IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 4444445555555555555544 5555555555555666666666666666666666666665555443
Q ss_pred -HHHHHHHc-CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 282 -FAELESLL-GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 -~a~le~~~-g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
++.++... |+++.|..+|++++..+.......+|..++..+...|+++.|..+|++++...| ++.+|..++..+...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 34455556 666666666666666211112357888888899999999999999999999987 689999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhc-cchh
Q psy8681 359 GDEDSVSLARRVFERANQALK-ASSE 383 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~-~~~~ 383 (521)
|+ ++.|..+|++++...| .+..
T Consensus 161 ~~---~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 161 GQ---LGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp TC---HHHHHHHHHHHHHHHCSCCHH
T ss_pred CC---HHHHHHHHHHHHHhCCCCCHH
Confidence 98 9999999999999998 6543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=140.03 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=215.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
+...|...|..+...|+++.|...|++++...|.++.. ..+|..++......| +++.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~ 65 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH----------------------DYAK 65 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc----------------------CHHH
Confidence 57789999999999999999999999999986643211 467777888777777 9999
Q ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLL 257 (521)
Q Consensus 188 Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~ 257 (521)
|...|++++...+. .....++..++......|+.+.+... |++++...|.. ..+|..++.++
T Consensus 66 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC--------CQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 99999999876321 12236777888888899999999877 88888876643 45899999999
Q ss_pred HHcCC--------------------HHHHHHHHHHHHHcCCch---h--------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 258 EDEGN--------------------ADLIRETYERAIANIPPT---K--------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 258 ~~~g~--------------------~~~Ar~~~erAl~~~P~~---~--------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
...|+ ++.|...|++++...+.. . .+.++...|+++.|...|++++...
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 999999999998863221 1 5677888999999999999998732
Q ss_pred CC-C---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 307 RL-D---MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-H------VKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 307 ~~-~---~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
+. . ....+|...+..+...|+++.|..+|++++...+ . ..++..++..+...|+ ++.|...|++|+
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~ 294 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHL 294 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHH
Confidence 11 1 1134677778888999999999999999998753 1 6678889999999998 999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
...+..++......++.....+-...|+.+.+.....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998776554444556666666666789998888877665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=126.13 Aligned_cols=226 Identities=10% Similarity=-0.008 Sum_probs=191.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchhhHHHHHhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGIEDVIVSKRKFQ 181 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~~~~~l~~~~~~ 181 (521)
.| ++..|..++..+...|++++|...|++++.. .++..+..++.+... .+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~-------------------- 56 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEK-------------------- 56 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC--------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCC--------------------
Confidence 35 6889999999999999999999999999983 356778888887776 66
Q ss_pred hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
+++.|...|+++++... . ..+..++.+... .|+.+.+... |++++.. .++.+|..++.++
T Consensus 57 --~~~~A~~~~~~a~~~~~--~--~a~~~lg~~~~~g~~~~~~~~~A~~~--------~~~a~~~--~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 57 --NLKKAASFYAKACDLNY--S--NGCHLLGNLYYSGQGVSQNTNKALQY--------YSKACDL--KYAEGCASLGGIY 120 (273)
T ss_dssp --CHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHTSSSCCCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHCCC--H--HHHHHHHHHHhCCCCcccCHHHHHHH--------HHHHHHc--CCccHHHHHHHHH
Confidence 99999999999998742 2 567777777777 8888888876 9999987 4899999999999
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh--
Q psy8681 258 ED----EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG-- 324 (521)
Q Consensus 258 ~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~-- 324 (521)
.. .+++++|...|++|+...+... ++.++.. .++++.|...|++++... +...+..++.++..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCC
Confidence 99 9999999999999999876544 5666777 899999999999999864 24577778888888
Q ss_pred --cCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhccc
Q psy8681 325 --QGERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 325 --~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.+++++|...|++++...+ +..+..++.++.. .++ +++|..+|++|+...|..
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~---~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRN---EKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCC---STTHHHHHHHHHHHTCHH
T ss_pred CCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHHcCCHH
Confidence 9999999999999998865 7888889998887 666 999999999999987754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=146.24 Aligned_cols=216 Identities=7% Similarity=-0.073 Sum_probs=180.7
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh-hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV-SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~-~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
+.++.+... +... ...| +...|..+|..+...|++ ++|...|++|+...| .+..+|..++......|
T Consensus 82 ~~~~~al~~l~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----- 151 (474)
T 4abn_A 82 EEMEKTLQQMEEVL--GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---ELVEAWNQLGEVYWKKG----- 151 (474)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC-----
Confidence 457778888 8888 8888 799999999999999999 999999999999965 46789999999998888
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc---------CChhhHHHHHHhhHHHHHH
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY---------GDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~---------G~~~~a~~~i~~krr~~ye 237 (521)
+++.|...|++++...|. . ..|..++.+.... |+.+.|... |+
T Consensus 152 -----------------~~~~A~~~~~~al~~~p~-~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~--------~~ 203 (474)
T 4abn_A 152 -----------------DVTSAHTCFSGALTHCKN-K--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ--------AK 203 (474)
T ss_dssp -----------------CHHHHHHHHHHHHTTCCC-H--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH--------HH
T ss_pred -----------------CHHHHHHHHHHHHhhCCC-H--HHHHHHHHHHHHhccCChhhhhhhHHHHHHH--------HH
Confidence 999999999999999998 3 7888888888887 777777766 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDE--------GNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD 309 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~--------g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~ 309 (521)
+++..+|.+..+|..++..+... |++++|...|++|+...|.. +.
T Consensus 204 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~- 256 (474)
T 4abn_A 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA--------------------------SS- 256 (474)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG--------------------------GG-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc--------------------------cc-
Confidence 99999999999999999999887 77777777777777766510 01
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 310 MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 310 ~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
...+|..++.++...|++++|...|++++...| ++.+|..++..+...|+ ++.|...+.+.
T Consensus 257 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~ 318 (474)
T 4abn_A 257 -NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT 318 (474)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence 246777788888888888888888888888886 57788888888888776 88888777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=117.99 Aligned_cols=114 Identities=22% Similarity=0.388 Sum_probs=96.3
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNA------DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~------~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
...|+||+.|+.|+.+++..|++ ++.+++|+||+...|+... + .......+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-------~----------------~wrrYI~L 63 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-------G----------------QNESFARI 63 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-------T----------------TCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-------c----------------cHHHHHHH
Confidence 45899999999999999999999 9999999999999998530 0 01113458
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
|..|+.|+ ..++.++||++|+.|+..+. ..++|+.||+||.++|+ +.+||.++.+|+..+|..
T Consensus 64 WIrYA~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 64 QVRFAELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCc
Confidence 99998885 55999999999999998864 69999999999999999 999999999999999875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-12 Score=117.77 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|...|..+...|++++|...|++++...|. .+..+|...+......| +++.|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~----------------------~~~~A 61 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--QDSVTAYNCGVCADNIK----------------------KYKEA 61 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhh----------------------cHHHH
Confidence 6789999999999999999999999999999651 35677777888888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcC
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-------DAWFDYLRLLEDEG 261 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-------~~W~~y~~~~~~~g 261 (521)
...|++++...|... .+|..++......|+.+.+... |++++..+|.++ .+|..++..+...|
T Consensus 62 ~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 62 ADYFDIAIKKNYNLA--NAYIGKSAAYRDMKNNQEYIAT--------LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHHHHHHTTCSHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcchH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence 999999999999876 7899999999999999999877 999999999999 66888888888889
Q ss_pred CHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q psy8681 262 NADLIRETYERAIANIPP--TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l 334 (521)
++++|...|++|+...|. .. ++.++. ..+..+++.+....+.. ...+. .......+.+++|...
T Consensus 132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-----~~~~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFY-----NNGADVLRKATPLASSN--KEKYA--SEKAKADAAFKKAVDY 202 (228)
T ss_dssp CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-----HHHHHHHHHHGGGTTTC--HHHHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-----HHHHHHHHHHHhcccCC--HHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999988887 43 222222 33444556665543322 11121 1223345667777777
Q ss_pred HHHHHhcCC-CHHHHHHHHH
Q psy8681 335 HERLLERTV-HVKVWMNYAQ 353 (521)
Q Consensus 335 ~eral~~~~-~~~vwi~ya~ 353 (521)
|+++++..| ++.+...++.
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHH
Confidence 777777766 4555444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=133.59 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=178.5
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC-----CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFG-----EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~-----~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
..+| ...+|..++..+...|+++.|..+|++++.... ..+....++..++......|
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------------- 83 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------- 83 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------------
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------------
Confidence 5566 588999999999999999999999999998631 12334677778888887777
Q ss_pred hhhhhhHHHHHHHHHHHHhcC-----Ch-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--------C
Q psy8681 179 KFQYEEHERARVIYKYALDHI-----PK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--------P 244 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~-----P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--------P 244 (521)
+++.|..+|++++... +. .....++..++......|+.+.+... |++++... |
T Consensus 84 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 84 -----KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL--------CKRALEIREKVLGKDHP 150 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHHHCTTCH
T ss_pred -----CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH--------HHHHHHHHHHhcCCCCh
Confidence 9999999999999873 11 12236788888888899999998877 88888763 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC----
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIAN--------IPPTK-----FAELESLLGDMERARAIYELAISQPR---- 307 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--------~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~---- 307 (521)
....+|..++.++...|++++|...|++++.. .|... ++.++...|+++.|...|++++...+
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 66788999999999999999999999999987 33322 57788899999999999999986210
Q ss_pred --C-CCcHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 308 --L-DMPELVWKAYI------DFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 308 --~-~~~~~lw~~yi------~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
. .....+|.... ......+.+..+...|..++...| .+.+|..++..+...|+ ++.|..+|++|+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 0 00112333322 233445677778888888887765 57899999999999999 99999999999998
Q ss_pred hcc
Q psy8681 378 LKA 380 (521)
Q Consensus 378 ~~~ 380 (521)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=137.54 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
.++.+...++.++...|... .+|..++......|+. +.|... |++++..+|.+..+|..++.++...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a--~~~~~lg~~~~~~g~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEA--QALMLKGKALNVTPDYSPEAEVL--------LSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHTSSSSCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchhH--HHHHHHHHHHHhccccHHHHHHH--------HHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 57788888888888777665 7888888888899999 999877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh----HHHHHHHc---------CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc----
Q psy8681 263 ADLIRETYERAIANIPPTK----FAELESLL---------GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ---- 325 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~----~a~le~~~---------g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~---- 325 (521)
+++|...|++|+...|... ++.++..+ |+++.|...|++++...|. ...+|..++..+...
T Consensus 153 ~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999843 56677778 9999999999999997664 367899999998888
Q ss_pred ----CChHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 326 ----GERDKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 326 ----g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|++++|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|.+.
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH
Confidence 999999999999999887 68999999999999998 9999999999999999874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=145.96 Aligned_cols=165 Identities=19% Similarity=0.183 Sum_probs=145.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| ++..|..+|.++...|++++|...|++|++..| .+..+|..++......|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---~~~~a~~nLg~~l~~~g---------------------- 57 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQG---------------------- 57 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT----------------------
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------
Confidence 3468 688999999999999999999999999999865 46788999999988888
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
++++|...|++||+..|... ..|..++......|+.+.|... |+++|..+|.+..+|..++.++...|++
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~--~a~~nLg~~l~~~g~~~~A~~~--------~~kAl~l~P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFA--DAYSNMGNTLKEMQDVQGALQC--------YTRAIQINPAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999876 7888999999999999988877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++|...|++|++..|... ++.++..+|+++.|...|++++.
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999865 56777888999999888888875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=143.90 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.++.+|..++.....+| ++++|...|++||+..|... ..|..++....+.|+.+.|
T Consensus 7 ~~a~al~nLG~~~~~~G----------------------~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA 62 (723)
T 4gyw_A 7 THADSLNNLANIKREQG----------------------NIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEA 62 (723)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 34556666666666665 66666666666666666654 5666666666666666666
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~ 304 (521)
... |+++|..+|.+..+|..++.++...|++++|...|++|++..|..
T Consensus 63 ~~~--------~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------------------------ 110 (723)
T 4gyw_A 63 LMH--------YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------------------------ 110 (723)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------
T ss_pred HHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------
Confidence 655 666666666666666666666666666666666666666655542
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
...|..++..+...|++++|...|+++++..| ++.+|..++..+...|+ ++.|...|++++...++
T Consensus 111 -------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 111 -------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---HHHHHHHHHHHHHhChh
Confidence 45666667777777777777777777777776 57777777777777777 77777777777776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-11 Score=116.73 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=174.1
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh---
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG--- 159 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~--- 159 (521)
.|+++.|... ++++ . | ++..|..++.++.. .+++++|...|++++.. .++..+..++.+...
T Consensus 19 ~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 19 EKDFTQAKKYFEKAC--D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp TTCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhCCCC
Confidence 4555566666 6888 5 6 68899999999999 99999999999999987 257788888888876
Q ss_pred -hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHH
Q psy8681 160 -QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 160 -~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~ 234 (521)
.+ +++.|...|+++++.. +. ..+..++.+... .|+.+.+...
T Consensus 90 ~~~----------------------~~~~A~~~~~~a~~~~--~~--~a~~~lg~~~~~~~~~~~~~~~A~~~------- 136 (273)
T 1ouv_A 90 VSQ----------------------NTNKALQYYSKACDLK--YA--EGCASLGGIYHDGKVVTRDFKKAVEY------- 136 (273)
T ss_dssp SCC----------------------CHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHHHHH-------
T ss_pred ccc----------------------CHHHHHHHHHHHHHcC--Cc--cHHHHHHHHHHcCCCcccCHHHHHHH-------
Confidence 66 9999999999999874 22 577778888877 8898888877
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAI 303 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al 303 (521)
|++++... +..++..++.++.. .++.++|...|++|+...+... ++.++.. .++++.|...|++++
T Consensus 137 -~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 137 -FTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp -HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred -HHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 99999875 78899999999998 8999999999999999865443 5777888 999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC
Q psy8681 304 SQPRLDMPELVWKAYIDFEVG----QGERDKVRELHERLLERTVH 344 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar~l~eral~~~~~ 344 (521)
...+ ...+..++.++.. .+++++|...|++++...|.
T Consensus 214 ~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 214 ELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8753 4577777888888 89999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-11 Score=123.93 Aligned_cols=290 Identities=9% Similarity=-0.019 Sum_probs=211.0
Q ss_pred HHHHH--HHHHh----cCChhhhhhhcC------CCcH-------HHh----cccchhhHHH-HhhhccCCCCChhhHHH
Q psy8681 60 KAWKK--AMEEK----QGNKIGEEGANK------ENEE-------EER----DKERDREEED-ERKDEGDRDSDTTYGMR 115 (521)
Q Consensus 60 ~~W~~--~~e~~----~gn~~~Ar~ife------~P~~-------e~r----~g~~e~Ar~~-eral~~~~~P~~~~W~~ 115 (521)
..++. .++.. .++++.|...|+ .|.. +.. .++++.|... ++++ .. .++..+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~-~~~~a~~~ 152 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA--EQ-GRDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HC-CCHHHHHH
Confidence 44554 67777 888888888888 2322 444 5688888888 8887 43 26778888
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchh-----------hHHHHH
Q psy8681 116 ELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGI-----------EDVIVS 176 (521)
Q Consensus 116 ~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~-----------~~~~l~ 176 (521)
++.++.. .++++.|...|+++++. .++..+..++.+... .+ .+...... ....++
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLGVER-NDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888887 67888999999998875 245667777766554 11 11111100 011122
Q ss_pred hhhhh----hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 177 KRKFQ----YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 177 ~~~~~----~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
..+.. .++++.|...|+++++..+. ..+..++.+... .++.+.+... |++++.. .+++
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~y~~g~~~~~d~~~A~~~--------~~~a~~~--~~~~ 292 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNS----IAQFRLGYILEQGLAGAKEPLKALEW--------YRKSAEQ--GNSD 292 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHTTTSSCCHHHHHHH--------HHHHHTT--TCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHCCCCCCCCHHHHHHH--------HHHHHHc--CCHH
Confidence 22222 35889999999999987443 344445555444 5677777665 9998765 6788
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCchh---HHHHHHHcC---CHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 249 AWFDYLRLLEDE-----GNADLIRETYERAIANIPPTK---FAELESLLG---DMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 249 ~W~~y~~~~~~~-----g~~~~Ar~~~erAl~~~P~~~---~a~le~~~g---~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
++..++.++... ++.++|...|++|+...+... ++.++...| +++.|...|++++... +...|..
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 368 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHH
Confidence 999999999887 899999999999999766544 456666556 8899999999999863 3568888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhcc
Q psy8681 318 YIDFEVG----QGERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 318 yi~~e~~----~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~ 380 (521)
++.++.. .+++++|...|++++... ++..|..++.++.. .++ ++.|..+|++|+...|+
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERD---YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCCCC
Confidence 8888887 799999999999999863 68889999998887 555 99999999999999854
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=130.33 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=174.0
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHH
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGAR 130 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar 130 (521)
.|.. ..|.. ..+...|+++.|..+|+ .|..+ .+.. +..+| ...+|..++.++...|+++.|.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCK------------QALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHH------------HHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHH------------HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4555 66665 66667777777777764 34444 3322 01345 5788999999999999999999
Q ss_pred HHHHHHHHhc-----CCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-----C
Q psy8681 131 KVYERAVEFF-----GEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-----P 200 (521)
Q Consensus 131 ~vye~Al~~~-----~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-----P 200 (521)
.+|++++... ++.+....++..++......| +++.|..+|++++... +
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG----------------------KYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999874 333345677788888887777 9999999999999874 1
Q ss_pred h-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8681 201 K-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--------NPNNYDAWFDYLRLLEDEGNADLIRETYE 271 (521)
Q Consensus 201 ~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~e 271 (521)
. .....++..++.+....|+.+.+... |++++.. +|....+|..++.++...|++++|...|+
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYY--------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12236788888888899999999877 8998887 67778899999999999999999999999
Q ss_pred HHHHcCCchh--------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 272 RAIANIPPTK--------------------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 272 rAl~~~P~~~--------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+++...|... .+......+.+..|...|..++...+. ...+|..++.++...|++++|
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT--VTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH--HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHHHHCCCHHHH
Confidence 9998654421 111223344555556666666654332 356788889999999999999
Q ss_pred HHHHHHHHhcCC
Q psy8681 332 RELHERLLERTV 343 (521)
Q Consensus 332 r~l~eral~~~~ 343 (521)
..+|+++++..|
T Consensus 298 ~~~~~~al~l~~ 309 (311)
T 3nf1_A 298 ETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-10 Score=117.25 Aligned_cols=311 Identities=10% Similarity=-0.090 Sum_probs=220.0
Q ss_pred HHHHh----cCChhhhhhhcC------CCcH-------HHh----cccchhhHHH-HhhhccCCCCChhhHHHHHHHHHH
Q psy8681 65 AMEEK----QGNKIGEEGANK------ENEE-------EER----DKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQ 122 (521)
Q Consensus 65 ~~e~~----~gn~~~Ar~ife------~P~~-------e~r----~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~ 122 (521)
.++.. .++++.|...|+ .|.. +.. .++++.|... ++++ .. .++..+..++.++..
T Consensus 47 ~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~-~~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 47 YRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA--LK-GLPQAQQNLGVMYHE 123 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHc
Confidence 56666 789999988888 3332 555 7899999999 9988 43 367889999999998
Q ss_pred ----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchh-----------hHHHHHhhhhh--
Q psy8681 123 ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGI-----------EDVIVSKRKFQ-- 181 (521)
Q Consensus 123 ----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~-----------~~~~l~~~~~~-- 181 (521)
.+++++|...|++++.. .++..+..++.+... .+ .+..+... ....|+..+..
T Consensus 124 g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 124 GNGVKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 78999999999999876 246677777776654 11 11111100 01122333332
Q ss_pred --hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 182 --YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 182 --~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.++++.|...|+++++..+. ..+..++.+... .++.+.+... |++++.. .++.++..++.
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~--------~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDE----LGQLHLADMYYFGIGVTQDYTQSRVL--------FSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHH--------HHHHHTT--TCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHH--------HHHHHHC--CCHHHHHHHHH
Confidence 46788899999998876433 344445555443 4666666655 8888765 56788899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHHc-----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 256 LLED----EGNADLIRETYERAIANIPPTK---FAELESLL-----GDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 256 ~~~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~~-----g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
++.. .++.++|...|++|+...+... ++.++... ++++.|...|++++...+ ...+..++.++.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~ 339 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYF 339 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHH
Confidence 9888 7899999999999987644333 56666666 899999999999998643 356666777766
Q ss_pred hcC---ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q psy8681 324 GQG---ERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKE 396 (521)
Q Consensus 324 ~~g---~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~ 396 (521)
..| ++++|..+|++++.. .++..|..++.++.. .++ +++|..+|++|+..... . .+.....
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~~~~----~----a~~~Lg~ 407 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKD---EQQAAIWMRKAAEQGLS----A----AQVQLGE 407 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTTCH----H----HHHHHHH
T ss_pred hCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHhCCCH----H----HHHHHHH
Confidence 656 789999999999987 678899999998887 455 99999999999985321 1 2222222
Q ss_pred HHHH----cCCHHHHHHHHhhC
Q psy8681 397 FEAQ----HGDDESRAKLNSKL 414 (521)
Q Consensus 397 fE~~----~G~~~~~~~v~~~~ 414 (521)
+-.. .||.+.+.....+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHH
Confidence 2223 57887777766554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=124.91 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=179.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
...|.++...|+++.|...|++|+.... +.+....++..++.+....| +++.|..
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~----------------------~~~~A~~ 164 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK----------------------QTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----------------------CHHHHHH
Confidence 3388889999999999999999998743 22224577778888887777 9999999
Q ss_pred HHHHHHhcCChh-----hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKD-----RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLED 259 (521)
Q Consensus 191 iy~~aL~~~P~~-----~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~~ 259 (521)
.|.+|++..+.. ....++..++......|+.+.|... |++++...|.. ..++..++.++..
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH--------FQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 999999874432 2235777788888899999999877 99999875533 2589999999999
Q ss_pred cCCHHHHHHHHHHHHH-----cC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC--CC-cHHHHHHHHHHHHhc
Q psy8681 260 EGNADLIRETYERAIA-----NI-PPTK-----FAELESLLGDMERARAIYELAISQPRL--DM-PELVWKAYIDFEVGQ 325 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~-----~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~--~~-~~~lw~~yi~~e~~~ 325 (521)
.|++++|...|++|+. .. |... .+.++..+|+++.|...|++++...+. +. ....+..+..++...
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999 34 4332 677888999999999999999874210 10 112234456667778
Q ss_pred CC---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 326 GE---RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 326 g~---~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
|+ +.+|..++++.-.......++..++.++...|+ +++|...|++|+.....
T Consensus 317 ~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN---FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 88 777777777662111246678889999999998 99999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-11 Score=120.39 Aligned_cols=259 Identities=12% Similarity=0.008 Sum_probs=193.8
Q ss_pred hcccchhhHHH-HhhhccCCCC-C-h----hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D-T----TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAKFE 157 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~-~----~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~~e 157 (521)
..|+++.|+.. ++++ ...| + . .++..++.++...|+++.|+..|++++...+..... ...+..++...
T Consensus 26 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 26 NDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34666666666 7888 6666 2 2 256777888889999999999999999875432111 22334555566
Q ss_pred HhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 158 EGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
...| +++.|...|++++...+. .....++..++......|+.+.+...
T Consensus 104 ~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---- 157 (373)
T 1hz4_A 104 FAQG----------------------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS---- 157 (373)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHCC----------------------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 6666 999999999999987421 11224566677777888999999877
Q ss_pred HHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--h--h--------HHHHHHHcCCHHH
Q psy8681 232 RKFQYEEEVNSNPN-----NYDAWFDYLRLLEDEGNADLIRETYERAIANIPP--T--K--------FAELESLLGDMER 294 (521)
Q Consensus 232 rr~~ye~al~~~P~-----~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~--~--~--------~a~le~~~g~~e~ 294 (521)
|++++...|. ...+|..++.++...|++++|...|++++...+. . . .+.+....|+++.
T Consensus 158 ----~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 158 ----ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp ----HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 9999998775 2467888999999999999999999999876322 1 1 1233568899999
Q ss_pred HHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHcCCchhhH
Q psy8681 295 ARAIYELAISQPRLD--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV------H-VKVWMNYAQFEMSSGDEDSVS 365 (521)
Q Consensus 295 Ar~ife~al~~~~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~------~-~~vwi~ya~~e~~~g~~~~~~ 365 (521)
|...+..++...+.. .....+..++.++...|+++.|..++++++...+ . ..++..++..+...|+ .+
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~ 310 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR---KS 310 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC---HH
Confidence 999999998754322 1234567778888899999999999999988642 1 2467778888888898 99
Q ss_pred HHHHHHHHHHHHhccc
Q psy8681 366 LARRVFERANQALKAS 381 (521)
Q Consensus 366 ~AR~vferAl~~~~~~ 381 (521)
.|+..|++|+...+..
T Consensus 311 ~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 311 DAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=110.15 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=100.0
Q ss_pred cchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
+++.|... ++++ ..+| +...|..++..+...|+++.|..+|++++...| .+..+|..++......+
T Consensus 23 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~------- 90 (186)
T 3as5_A 23 RYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP---DNVKVATVLGLTYVQVQ------- 90 (186)
T ss_dssp CHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhc-------
Confidence 33334444 4666 6666 566677777777777777777777777776643 34566666666666665
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.
T Consensus 91 ---------------~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~ 145 (186)
T 3as5_A 91 ---------------KYDLAVPLLIKVAEANPINF--NVRFRLGVALDNLGRFDEAIDS--------FKIALGLRPNEGK 145 (186)
T ss_dssp ---------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHH
T ss_pred ---------------CHHHHHHHHHHHHhcCcHhH--HHHHHHHHHHHHcCcHHHHHHH--------HHHHHhcCccchH
Confidence 67777777777777666654 5666666666666776666655 7777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
+|..++.++...|++++|...|++++...|.
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 7777777777777777777777776665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-11 Score=112.77 Aligned_cols=196 Identities=11% Similarity=0.011 Sum_probs=151.4
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHcCChhh
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP-KDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P-~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
.++..|...+......| +++.|...|++++...| .+. .++..++......|+.+.
T Consensus 5 ~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~ 60 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAK----------------------NYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKE 60 (228)
T ss_dssp CCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHH
Confidence 35677788887777777 99999999999999998 554 566667888888999999
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCC
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGD 291 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~ 291 (521)
+... |++++..+|.+..+|..++.++...|++++|...|++++...|.+. .+.+....|+
T Consensus 61 A~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 61 AADY--------FDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHH--------HHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH--------HHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 9877 9999999999999999999999999999999999999999999855 3556678899
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Q psy8681 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRV 370 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~v 370 (521)
++.|...|++++...|.+.....|...+.++... +..+++++....+ .+..+... .....+. +++|...
T Consensus 133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~---~~~A~~~ 202 (228)
T 4i17_A 133 IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAA---FKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHH---HHHHHHH
Confidence 9999999999998765310245666666665443 3455666666653 33333222 2222333 8999999
Q ss_pred HHHHHHHhccch
Q psy8681 371 FERANQALKASS 382 (521)
Q Consensus 371 ferAl~~~~~~~ 382 (521)
|++|++..|++.
T Consensus 203 ~~~a~~l~p~~~ 214 (228)
T 4i17_A 203 LGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHhhcCCCCH
Confidence 999999999874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-11 Score=106.93 Aligned_cols=155 Identities=16% Similarity=-0.006 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .++..++......|+.+.+... |++++..+|.+..+|..++..+...|++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTEL--------LERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 66666666666666655543 4555555555556666655544 6666666666666666666666555555
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++|...|++++...|. ...+|..++..+...|+++.|..+|++++...|
T Consensus 93 ~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI-------------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHHHHHHCTT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCcH-------------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 5555555555554442 245677777778888899999999999888876
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|..+|++++...|.+.
T Consensus 142 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCch
Confidence 67888888888888888 8999999999988887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-12 Score=120.04 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=136.0
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh-
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG- 159 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~- 159 (521)
..+.|+++.|+.. ++++ ..+| + ...|..+|..+...|+++.|...|++++...|.++..+.++..++.....
T Consensus 25 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 3445666666777 7999 9999 6 78999999999999999999999999999988665567778888877766
Q ss_pred -------hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHH-----------------HHHHHHH
Q psy8681 160 -------QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIY-----------------KAYTIHE 215 (521)
Q Consensus 160 -------~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~-----------------~~~~~~e 215 (521)
.| +++.|...|++++...|.+. ..+ ..++.+.
T Consensus 103 ~~~~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 103 SPPYELDQT----------------------DTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp CCCTTSCCH----------------------HHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccch----------------------hHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 99999999999999999864 222 4556777
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCchh
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPN---NYDAWFDYLRLLEDE----------GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~---~~~~W~~y~~~~~~~----------g~~~~Ar~~~erAl~~~P~~~ 281 (521)
...|+.+.|... |++++..+|. ...+|+.++..+... |++++|...|++++...|.+.
T Consensus 159 ~~~g~~~~A~~~--------~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 159 ERRELYEAAAVT--------YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHTTCHHHHHHH--------HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHccCHHHHHHH--------HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 788999998877 9999999998 467999999999876 788999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=118.60 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=136.8
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| ++..+...|..+...|++++|...|++++...|..+..+.+|..++......|
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---------------------- 66 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---------------------- 66 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC----------------------
Confidence 4456 68999999999999999999999999999998754444788898998888888
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHH--------cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKK--------YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~--------~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
+++.|...|++++...|.+. ....+..++..... .|+.+.|... |++++..+|.+..++..+.
T Consensus 67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~--------~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA--------FQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH--------HHHHHHHCTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH--------HHHHHHHCcCchhHHHHHH
Confidence 99999999999999988652 23556666666666 7888888766 9999999999877774443
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhc--------
Q psy8681 255 RLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQ-------- 325 (521)
Q Consensus 255 ~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~-------- 325 (521)
.+....+....+ .| ..+.++...|+++.|...|+.++...|.+ .....|...+..+...
T Consensus 139 ~~~~~~~~~~~~--~~----------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 139 KIRELRAKLARK--QY----------EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp HHHHHHHHHHHH--HH----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHH--HH----------HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhc
Confidence 322211111100 00 03455555666666666666666533221 1234455555555444
Q ss_pred --CChHHHHHHHHHHHhcCCC
Q psy8681 326 --GERDKVRELHERLLERTVH 344 (521)
Q Consensus 326 --g~~~~Ar~l~eral~~~~~ 344 (521)
|++++|...|++++..+|+
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHCCC
Confidence 7778888888888887763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-12 Score=119.96 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=123.8
Q ss_pred hhHHH-HhhhccC-CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhc-----CCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 94 REEED-ERKDEGD-RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFF-----GEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 94 ~Ar~~-eral~~~-~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~-----~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.|..+ .+.. . .+| .+.+|..++.++...|+++.|...|++++... ++++....+|..++......|
T Consensus 26 ~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 99 (283)
T 3edt_B 26 QALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---- 99 (283)
T ss_dssp HHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc----
Confidence 44444 4443 3 335 57899999999999999999999999999874 333445678888888888887
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI--------PKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~--------P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
+++.|...|++++... |.. ..++..++......|+.+.+... |+
T Consensus 100 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~--------~~ 151 (283)
T 3edt_B 100 ------------------KYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQNQGKAEEVEYY--------YR 151 (283)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHH--------HH
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHH--------HH
Confidence 9999999999999873 333 37888888888899999999877 99
Q ss_pred HHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 238 EEVNS--------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 238 ~al~~--------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
+++.. .|....+|..++.++...|++++|...|++++...|
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99888 677788999999999999999999999999988644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-10 Score=114.62 Aligned_cols=271 Identities=11% Similarity=0.018 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL--DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..++...+.+....|+++.|...+++++...|.... ...++..++......| +++.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~ 71 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG----------------------ELTR 71 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT----------------------CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC----------------------cHHH
Confidence 355677788888999999999999999998763211 1123445555555566 9999
Q ss_pred HHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--------CCCHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--------PNNYDAWFDYLR 255 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--------P~~~~~W~~y~~ 255 (521)
|+..|++++...|... ....+..++.+....|+.+.+... |++++... |....++..++.
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET--------QEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 9999999998755432 123345567777888999998877 88888764 334567778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCCHHHHHHHHHHHHcC-CCCCCcHHHHHH-----HH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGDMERARAIYELAISQ-PRLDMPELVWKA-----YI 319 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~~e~Ar~ife~al~~-~~~~~~~~lw~~-----yi 319 (521)
++...|++++|...|++++...|... ++.+....|+++.|...++.++.. .....+ ..|.. .+
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~ 222 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRV 222 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence 99999999999999999999876421 567788899999999999999863 111112 23333 23
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q psy8681 320 DFEVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394 (521)
Q Consensus 320 ~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~ 394 (521)
.+....|+++.|..++++++...+. ...+..++..+...|+ ++.|...+++++...+..+.......++...
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4466899999999999999876532 3367788888989898 9999999999998876644322223344444
Q ss_pred HHHHHHcCCHHHHHHHHhhC
Q psy8681 395 KEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 395 ~~fE~~~G~~~~~~~v~~~~ 414 (521)
...-...|+.+.+.....+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 44455779998887777665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=108.72 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=123.2
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
..|++++|+.. ++++ ...| ++..|..++.++...|+++.|...|++++...| .++.+|..++.+....|
T Consensus 9 ~~~~~e~ai~~~~~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~~---- 79 (150)
T 4ga2_A 9 SKADVERYIASVQGST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE---RDPKAHRFLGLLYELEE---- 79 (150)
T ss_dssp CHHHHHHHHHHHHHHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----
T ss_pred HcChHHHHHHHHHHhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----
Confidence 35788999999 9999 8888 688899999999999999999999999999965 47889999999999888
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|+++++..|.+. .+|..++.+....|+...+... .+++++..+|+
T Consensus 80 ------------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~aa~~-------~~~~al~l~P~ 132 (150)
T 4ga2_A 80 ------------------NTDKAVECYRRSVELNPTQK--DLVLKIAELLCKNDVTDGRAKY-------WVERAAKLFPG 132 (150)
T ss_dssp ------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCSSSSHHHH-------HHHHHHHHSTT
T ss_pred ------------------chHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHH-------HHHHHHHhCcC
Confidence 99999999999999999987 7899999988889987654432 16999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy8681 246 NYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~ 262 (521)
++.+|.....++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999887774
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-11 Score=120.34 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=174.4
Q ss_pred HHhcccchhhHHH-HhhhccCC---CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDR---DS----DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAF 153 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~---~P----~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~ 153 (521)
....|+++.|... ++++ .. .| ...+|..+|.++...|+++.|...|.+|+...+.... ...++..+
T Consensus 113 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAE--SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH--HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3456777888888 8887 55 22 2578999999999999999999999999998654322 23456666
Q ss_pred HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 154 AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 154 a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
+......| +++.|...|++|+...|... ...++..++......|+.+.|...
T Consensus 191 g~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-- 246 (383)
T 3ulq_A 191 ATNFLDLK----------------------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY-- 246 (383)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHhc----------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 77776676 99999999999998754321 235777788888899999999877
Q ss_pred hhHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCC--
Q psy8681 230 SKRKFQYEEEVN-----SN-PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGD-- 291 (521)
Q Consensus 230 ~krr~~ye~al~-----~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~-- 291 (521)
|++++. .+ |....++..++..+...|++++|...|++|+...+... ++.++...|+
T Consensus 247 ------~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 247 ------FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp ------HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred ------HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999998 56 77889999999999999999999999999998754321 4556667788
Q ss_pred -HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 292 -MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 292 -~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
+..|..+++.+-..+ ....++...+.++...|++++|...|++++...
T Consensus 321 ~~~~al~~~~~~~~~~---~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 321 AIQGFFDFLESKMLYA---DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888887762211 124577778888999999999999999999864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=107.77 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHH----------------HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKA----------------YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~----------------~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
|+++.|...|++++...|.+. ..|.. ++......|+.+.|... |++++..+|.+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~ 87 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF--------YKELLQKAPNN 87 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHCCCC
Confidence 499999999999999999876 56666 77777788888888876 89999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcC--CHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLG--DMERARAIYELAISQPRLDMPELVWKAYI 319 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g--~~e~Ar~ife~al~~~~~~~~~~lw~~yi 319 (521)
+.+|..++.++...|++++|...|++++...|.+. ++.++...| ....+...|..++..++ ....|...+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHH
Confidence 99999999999888999999999999888888754 233332222 23344445555443221 111222223
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCHHHH
Q psy8681 320 DFEVGQGERDKVRELHERLLERTVHVKVW 348 (521)
Q Consensus 320 ~~e~~~g~~~~Ar~l~eral~~~~~~~vw 348 (521)
......|++++|+..|++++...|+..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 33344566666666666666666654433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=108.90 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHH----------------HHHHHHhhhhhccccchhhH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIA----------------FAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~----------------~a~~e~~~~~~~~~~~~~~~ 172 (521)
++..++..+..+...|+++.|...|++++...| .++.+|.. ++......|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g----------- 68 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKNSEISSKLATELALAYKKNR----------- 68 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-----------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-----------
Confidence 467788889999999999999999999999854 35666666 666665555
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
+++.|...|+++++..|.+. .+|..++.+....|+.+.|... |++++..+|.++.+|+.
T Consensus 69 -----------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~P~~~~a~~~ 127 (208)
T 3urz_A 69 -----------NYDKAYLFYKELLQKAPNNV--DCLEACAEMQVCRGQEKDALRM--------YEKILQLEADNLAANIF 127 (208)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCHHHHHH
Confidence 99999999999999999987 8899999999999999999877 99999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 253 YLRLLEDEG--NADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 253 y~~~~~~~g--~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
++.++...| ....+...|.+++...|... .+.....+|+++.|...|++++...|.
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999987655 34566777777765433221 233445679999999999999997663
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-11 Score=114.78 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=164.1
Q ss_pred HcCChhHHHHHHHHHHHhcC-----CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFG-----EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~-----~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
..|+++.|...|++|+..+. +++....+|..++......| +++.|...|++++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~al 70 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------------KYKEAAHLLNDAL 70 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHH
Confidence 45789999999999998642 22345677888888888887 9999999999999
Q ss_pred hcC-----Ch-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCC
Q psy8681 197 DHI-----PK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--------NPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 197 ~~~-----P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--------~P~~~~~W~~y~~~~~~~g~ 262 (521)
... +. .....++..++......|+.+.+... |++++.. +|....+|..++.++...|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 142 (283)
T 3edt_B 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL--------CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142 (283)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Confidence 773 11 12236788888888899999999877 8888877 46778899999999999999
Q ss_pred HHHHHHHHHHHHHc--------CCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-------CCCCcHHHHHHHHHHH
Q psy8681 263 ADLIRETYERAIAN--------IPPTK-----FAELESLLGDMERARAIYELAISQP-------RLDMPELVWKAYIDFE 322 (521)
Q Consensus 263 ~~~Ar~~~erAl~~--------~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-------~~~~~~~lw~~yi~~e 322 (521)
+++|...|++++.. .|... ++.++...|+++.|...|+.++... .......+|.....+.
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE 222 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 99999999999997 33322 6778889999999999999998631 0111234666666555
Q ss_pred HhcCChH------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 323 VGQGERD------KVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 323 ~~~g~~~------~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...+... .+...+..+....| .+.+|..++.++...|+ +++|..+|++|+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 281 (283)
T 3edt_B 223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred hcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 5444333 33333332222222 36678889999999998 99999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-11 Score=132.60 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=140.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAV--------EFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al--------~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l 175 (521)
...| ++..+...+ ...|++++|...|++++ ...| .+..+|...+......|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p---~~~~~~~~~a~~~~~~g-------------- 447 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS---ESVELPLMEVRALLDLG-------------- 447 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT---TCSHHHHHHHHHHHHHT--------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc---cchhHHHHHHHHHHhcC--------------
Confidence 3456 455555444 67899999999999999 5533 46788999998888888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
+++.|...|+++++..|.+. .+|..++......|+.+.|... |++++..+|.++.+|+.++.
T Consensus 448 --------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 448 --------DVAKATRKLDDLAERVGWRW--RLVWYRAVAELLTGDYDSATKH--------FTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp --------CHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTTCSHHHHHHHH
T ss_pred --------CHHHHHHHHHHHhccCcchH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999887 7888888888899999999877 99999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
++...|++++ ...|++|++..|.+. .+|...+..+...|++++|...|
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~-------------------------------~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVI-------------------------------SAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchH-------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999 999999998888643 34444555555556666666666
Q ss_pred HHHHhcCC-CHHHHHHHHHHHH
Q psy8681 336 ERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 336 eral~~~~-~~~vwi~ya~~e~ 356 (521)
+++++..| +..+|...+..+.
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC
T ss_pred HhhcccCcccHHHHHHHHHHHH
Confidence 66555554 2455555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-11 Score=107.39 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=123.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
+| ....++..+..+...|+++.|...|++++...| .++.+|..++.+....| ++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g----------------------~~ 56 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQ---SRGDVKLAKADCLLETK----------------------QF 56 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH---TSHHHHHHHHHHHHHTT----------------------CH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHCC----------------------CH
Confidence 45 356788999999999999999999999999855 47889999999998888 99
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHH--HHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIH--EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~--e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+.|...|++++...| +. .++...+.+ ....+. ..+.. .|++++..+|.++.+|+.++..+...|++
T Consensus 57 ~~A~~~~~~a~~~~p-~~--~~~~~~~~~~~~~~~~~-~~a~~--------~~~~al~~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 57 ELAQELLATIPLEYQ-DN--SYKSLIAKLELHQQAAE-SPELK--------RLEQELAANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHTTCCGGGC-CH--HHHHHHHHHHHHHHHTS-CHHHH--------HHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhccC-Ch--HHHHHHHHHHHHhhccc-chHHH--------HHHHHHHhCCCCHHHHHHHHHHHHHcccH
Confidence 999999999999988 54 333332222 222222 22333 39999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
++|...|++++...|... ...+|..++.++...|+.+.|...|+++|.
T Consensus 125 ~~A~~~~~~~l~~~p~~~-----------------------------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQ-----------------------------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTT-----------------------------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccC-----------------------------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999888877421 123455555555555666666666665553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-10 Score=106.86 Aligned_cols=193 Identities=8% Similarity=-0.077 Sum_probs=133.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..+...|..+...|++++|...|++++...|..+....++..++......| +++.|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~----------------------~~~~A 60 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA----------------------DLPLA 60 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC----------------------CHHHH
Confidence 45678888888888999999999999999887754444677888888777777 89999
Q ss_pred HHHHHHHHhcCChhhHH-HHHHHHHHHHH------------------HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 189 RVIYKYALDHIPKDRTA-EIYKAYTIHEK------------------KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~-~l~~~~~~~e~------------------~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
...|+++++..|.+... ..+...+.... ..|+.+.|... |++++..+|.+..+
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD--------FSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH--------HHHHHTTCTTCTTH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH--------HHHHHHHCcCChhH
Confidence 99999999988876421 12222222211 13455556554 99999999999877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHHhcCCh
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM-PELVWKAYIDFEVGQGER 328 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~-~~~lw~~yi~~e~~~g~~ 328 (521)
|..+..+..-.+....+. + ..+.++...|+++.|...|++++...|.+. ...++...+..+...|++
T Consensus 133 ~~a~~~l~~~~~~~~~~~--~----------~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 133 TDATKRLVFLKDRLAKYE--Y----------SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 755443322111111100 0 145667778888888888888888554321 235677778888889999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8681 329 DKVRELHERLLERTV 343 (521)
Q Consensus 329 ~~Ar~l~eral~~~~ 343 (521)
+.|+..|++++...|
T Consensus 201 ~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 201 AQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999998887764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-10 Score=113.38 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+...+.++...|++++|...|.+|+...+. ......+|..++......| +++.|.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g----------------------~~~~A~ 97 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG----------------------NSVNAV 97 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC----------------------CHHHHH
Confidence 334455677889999999999999987431 1122567788888888777 999999
Q ss_pred HHHHHHHhcCChhh----HHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDR----TAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLE 258 (521)
Q Consensus 190 ~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~ 258 (521)
..|++|+...|... ....+..++.+.... |+.+.|... |++++...|.+ ..+|..++.++.
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~--------~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC--------YELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999998866431 235777888888885 999999877 99999988754 567889999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK------------FAELESLLGDMERARAIYELAISQPRLDMP---ELVWKAYIDFEV 323 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~---~~lw~~yi~~e~ 323 (521)
..|++++|...|++++...|... .+.++..+|+++.|+..|++++...|.... ..++...+..+.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999877532 234455677777777777777774332111 112222222222
Q ss_pred --hcCChHHHHHHHHHHHhcCC
Q psy8681 324 --GQGERDKVRELHERLLERTV 343 (521)
Q Consensus 324 --~~g~~~~Ar~l~eral~~~~ 343 (521)
..+.+..|...|++++...|
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCH
T ss_pred cCCHHHHHHHHHHhccCCccHH
Confidence 34556666666666655544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.6e-11 Score=103.44 Aligned_cols=139 Identities=14% Similarity=-0.020 Sum_probs=111.3
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..+++++|...|+.++...|... ..+..++.+....|+.+.|... |+++|..+|.++.+|..++.++...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKY--------ICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34589999999999998877665 5677788888889999999877 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH-HHHHH
Q psy8681 261 GNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL-HERLL 339 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l-~eral 339 (521)
|++++|...|++|+...|.+ ..+|..++.++...|++++|... +++++
T Consensus 79 ~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQ-------------------------------KDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-------------------------------HHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCC-------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999988887753 34666777777777877655544 57888
Q ss_pred hcCC-CHHHHHHHHHHHHHcCC
Q psy8681 340 ERTV-HVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 340 ~~~~-~~~vwi~ya~~e~~~g~ 360 (521)
+..| ++.+|...+.+....|+
T Consensus 128 ~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 128 KLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHSTTCHHHHHHHHHHHHTCCC
T ss_pred HhCcCCHHHHHHHHHHHHHhCc
Confidence 8776 57777777777666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-10 Score=123.88 Aligned_cols=160 Identities=16% Similarity=0.061 Sum_probs=143.4
Q ss_pred HHhcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE 157 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e 157 (521)
-...|++++|... ++++. ...+| +...|..++..+...|++++|...|++++...| .+..+|..++...
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVAE 477 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHHH
Confidence 3467889999999 88871 13568 789999999999999999999999999999965 4688999999988
Q ss_pred HhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 158 EGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
...| ++++|...|+++++..|.+. ..|..++......|+.+. ... |+
T Consensus 478 ~~~g----------------------~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~--------~~ 524 (681)
T 2pzi_A 478 LLTG----------------------DYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKF--------YQ 524 (681)
T ss_dssp HHHT----------------------CHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCH--------HH
T ss_pred HHcC----------------------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHH--------HH
Confidence 8888 99999999999999999987 788889988889999988 766 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+++..+|.+..+|+.++..+...|+.++|...|++|+...|...
T Consensus 525 ~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 525 TVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 99999999999999999999999999999999999999999865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-10 Score=113.12 Aligned_cols=235 Identities=10% Similarity=-0.039 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.|...|.++...|+++.|...|++|+...+. .+....++..++.+....| +++.|
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~----------------------~~~~A 160 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK----------------------QTHVS 160 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC----------------------CcHHH
Confidence 5777788889999999999999999987542 2223566777777777777 99999
Q ss_pred HHHHHHHHhcCCh-----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPK-----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP------NNYDAWFDYLRLL 257 (521)
Q Consensus 189 r~iy~~aL~~~P~-----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P------~~~~~W~~y~~~~ 257 (521)
...|++|++..+. ......+..++......|+.+.|... |++++...+ ....++..++.++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH--------LEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999987442 12346777888888899999999877 899988633 1246788999999
Q ss_pred HHcCCHHHHHHHHHHHHH-----cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C-CcHHHHHHHHHHHHh
Q psy8681 258 EDEGNADLIRETYERAIA-----NIPPTK-----FAELESLLGDMERARAIYELAISQPRL--D-MPELVWKAYIDFEVG 324 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~-----~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~--~-~~~~lw~~yi~~e~~ 324 (521)
...|++++|...|++|+. ..|... ++.++..+|+++.|...|++++...+. + ........+..+...
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999 555443 577888999999999999999983211 1 112233444445556
Q ss_pred cCC---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 325 QGE---RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 325 ~g~---~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.|+ +.+|...+++.-.......++..++.++...|+ ++.|...|++++....
T Consensus 313 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH---FEQAAAFYRKVLKAQE 367 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 677 677777776621111235677889999999998 9999999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=112.81 Aligned_cols=139 Identities=10% Similarity=-0.036 Sum_probs=115.9
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| +...+...+..+...|+++.|...|++++...| .++.++..++......| ++
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g----------------------~~ 167 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN---QNGEIGLLLAETLIALN----------------------RS 167 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHTT----------------------CH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHCC----------------------CH
Confidence 37 578999999999999999999999999999965 46789999999999888 99
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~ 265 (521)
++|..+|++++...|... ..+..........|....+... |++++..+|.+..+|+.++.++...|++++
T Consensus 168 ~~A~~~l~~~~~~~p~~~--~~~~~~~~~l~~~~~~~~a~~~--------l~~al~~~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQDTR--YQGLVAQIELLXQAADTPEIQQ--------LQQQVAENPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp HHHHHHHTTSCGGGCSHH--HHHHHHHHHHHHHHTSCHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCchhhcchH--HHHHHHHHHHHhhcccCccHHH--------HHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 999999999999999543 2222222223344445555544 999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCch
Q psy8681 266 IRETYERAIANIPPT 280 (521)
Q Consensus 266 Ar~~~erAl~~~P~~ 280 (521)
|...|.+++...|..
T Consensus 238 A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 238 ALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHhccccc
Confidence 999999999988864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-10 Score=111.74 Aligned_cols=188 Identities=16% Similarity=0.081 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDY 253 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y 253 (521)
+++.|...|.+|+...+. ......|...+......|+.+.|... |++++...|.. ..+|..+
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS--------LENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999887432 12246788889999999999999877 99999987643 4689999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc-----HHHHH
Q psy8681 254 LRLLEDE-GNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLDMP-----ELVWK 316 (521)
Q Consensus 254 ~~~~~~~-g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~-----~~lw~ 316 (521)
+.++... |++++|...|++|+...|... ++.+...+|+++.|...|++++...+.... ...|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 999999999999999877531 577788999999999999999996543211 12566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-HH-----HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTVH-VK-----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~-----vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..+..+...|+++.|+..|++++...|. .. .+..++..+. .++.+++..|...|++++...|.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHH
Confidence 6777788899999999999999998763 22 2333444332 23445588999999888776554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-10 Score=113.52 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=170.8
Q ss_pred HHhcccchhhHHH-HhhhccCCC---C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRD---S----DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAF 153 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~---P----~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~ 153 (521)
+...|+++.|... ++++ ... + ...++..+|.++...|+++.|...|++|+...+.... ...++..+
T Consensus 111 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAE--KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456677777777 7776 542 2 2678999999999999999999999999998653222 24556667
Q ss_pred HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 154 AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 154 a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
+......| +++.|...|++|+...+. .....++..++......|+.+.|...
T Consensus 189 g~~y~~~~----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-- 244 (378)
T 3q15_A 189 AGNYDDFK----------------------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH-- 244 (378)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH--
T ss_pred HHHHHHhC----------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 77777776 999999999999986432 12235677788888889999999877
Q ss_pred hhHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCC---
Q psy8681 230 SKRKFQYEEEVN-----SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGD--- 291 (521)
Q Consensus 230 ~krr~~ye~al~-----~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~--- 291 (521)
|++++. .+|....++..++..+...|+.++|...|++|+...+... ++.+....|+
T Consensus 245 ------~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 245 ------FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp ------HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred ------HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 999998 7888899999999999999999999999999999865422 3445556677
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
+..|...|+..-..+ ....++...+.++...|++++|...|++++..
T Consensus 319 ~~~al~~~~~~~~~~---~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 319 IHDLLSYFEKKNLHA---YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777877777632111 12456777888899999999999999999875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-10 Score=104.77 Aligned_cols=186 Identities=9% Similarity=0.005 Sum_probs=118.9
Q ss_pred HhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
.+.|+++.|+.. ++++ ..+| + ...|..+|..+...|+++.|+..|++++...|+.+..+..+...+......+
T Consensus 15 ~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 345677777777 7999 8888 4 3689999999999999999999999999998865433345555554443322
Q ss_pred hhccccchhhHHH--HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 162 EKYGDRAGIEDVI--VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 162 ~~~~~~~~~~~~~--l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
. . ....+ +.......++++.|...|+++++..|.+. ..+.++..+....+ .
T Consensus 93 ~---~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~--~a~~a~~~l~~~~~-------------------~ 145 (225)
T 2yhc_A 93 D---S---ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ--YTTDATKRLVFLKD-------------------R 145 (225)
T ss_dssp C--------------------CCHHHHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHH-------------------H
T ss_pred h---h---hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh--hHHHHHHHHHHHHH-------------------H
Confidence 0 0 00000 01111223589999999999999999876 34433322111100 0
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
-....+.++.++...|++..|...|++++...|.+. .+..+..+|+.+.|+..|+.+...+|
T Consensus 146 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 ------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 012234566777777777777777777777777654 45556677777777777777766544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=106.67 Aligned_cols=234 Identities=10% Similarity=0.021 Sum_probs=170.7
Q ss_pred cccc-hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 89 DKER-DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG--FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 89 ~g~~-e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g--~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.|++ ++|..+ +++| ..+| ...+|..-+.+....| .++++...++.++...| .+..+|..-..........
T Consensus 45 ~~e~s~~aL~~t~~~L--~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP---k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 45 AEEYSERALHITELGI--NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE---KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc---ccHHHHHHHHHHHHHHHHh
Confidence 4445 579999 9999 9999 7899999999999999 99999999999999966 4677888776655221100
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChh--hHHHHHHhhHHHHHHHHHh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA--GIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~--~a~~~i~~krr~~ye~al~ 241 (521)
.+. .+.++++..++.++|+.+|.+. .+|.--.-+....|..+ ..... ++++|.
T Consensus 120 l~~---------------~~~~~~EL~~~~~~l~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~--------~~~~i~ 174 (306)
T 3dra_A 120 NNN---------------DFDPYREFDILEAMLSSDPKNH--HVWSYRKWLVDTFDLHNDAKELSF--------VDKVID 174 (306)
T ss_dssp TTT---------------CCCTHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHH--------HHHHHH
T ss_pred ccc---------------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcccChHHHHHH--------HHHHHH
Confidence 000 0167899999999999999987 78877777777788776 55555 999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCchh-----HHHHHHHcCC-HHHHHHHHHHHHcCC-CC
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGN------ADLIRETYERAIANIPPTK-----FAELESLLGD-MERARAIYELAISQP-RL 308 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~------~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~-~e~Ar~ife~al~~~-~~ 308 (521)
.+|.|+.+|...+.++...+. ++++...+.++|...|.+. ...+....|. .+.+..++..++... ..
T Consensus 175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 999999999999888887776 7888888888888888765 2334445554 333445555555432 00
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCC-CHHHHHHHH
Q psy8681 309 DMPELVWKAYIDFEVGQGERDKVRELHERLLE-RTV-HVKVWMNYA 352 (521)
Q Consensus 309 ~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~-~~~-~~~vwi~ya 352 (521)
..+..+|...++.+.+.|+.++|.++|+.+.. ..| ....|...+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 01345566666666677888888888888876 455 566776443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-09 Score=120.73 Aligned_cols=287 Identities=15% Similarity=0.043 Sum_probs=202.2
Q ss_pred HHHHhcCChhhhhhhcC---CCcH-----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANK---ENEE-----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYER 135 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife---~P~~-----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~ 135 (521)
.+....|.+++|..+|+ .+.. ....|++++|..+ +|+- ++.+|..+|......|.+++|...|.+
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46678999999999998 3333 3377899999999 8765 478999999999999999999999988
Q ss_pred HHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy8681 136 AVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE 215 (521)
Q Consensus 136 Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e 215 (521)
| .++..|...+.+....| +++.|...|..|.+..|... +...++...
T Consensus 1131 A--------dD~say~eVa~~~~~lG----------------------kyEEAIeyL~mArk~~~e~~---Idt~LafaY 1177 (1630)
T 1xi4_A 1131 A--------DDPSSYMEVVQAANTSG----------------------NWEELVKYLQMARKKARESY---VETELIFAL 1177 (1630)
T ss_pred c--------CChHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhhccccc---ccHHHHHHH
Confidence 7 25678888999998888 99999999999998875532 112233223
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHH
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~A 295 (521)
.+.|..+.++ ..+ ..| +...|...+..+.+.|++++|...|.+|-.. ...+..+..+|+++.|
T Consensus 1178 AKl~rleele------------~fI-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny---~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1178 AKTNRLAELE------------EFI-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---GRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HhhcCHHHHH------------HHH-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhHH---HHHHHHHHHhCCHHHH
Confidence 3335544332 223 233 4567778999999999999999999997321 1146667788999999
Q ss_pred HHHHHHHHcCCCC-----------------------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHH
Q psy8681 296 RAIYELAISQPRL-----------------------DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNY 351 (521)
Q Consensus 296 r~ife~al~~~~~-----------------------~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~y 351 (521)
..++.+|.....+ ..++......+.++...|.+++|+.+|+.+|...+ |..+|-.+
T Consensus 1241 IEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1241 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 9999888442110 00112233455667788999999999999998876 77788777
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
+..+.+..- ++..++...|...+..-|- -..-+...+|..+.-+=..+|+.+.+-.
T Consensus 1321 aiLyaKy~p-eklmEhlk~f~~rini~k~-~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKP-QKMREHLELFWSRVNIPKV-LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCH-HHHHHHHHHHHHhcccchH-hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 777776543 4466666677766654331 0011335678888777778888876543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-10 Score=122.34 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=128.3
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.|++++|... ++++ ..+| +...|..++..+...|++++|...|++++...| .+..+|..++......|
T Consensus 2 ~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----- 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP---GHPEAVARLGRVRWTQQ----- 71 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---TCHHHHHHHHHHHHHTT-----
T ss_pred CccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC-----
Confidence 3678888888 8999 9999 799999999999999999999999999999865 46789999999998888
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
++++|...|+++++..|.+. ..|..++......|+.+.|... |++++..+|.+
T Consensus 72 -----------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~p~~ 124 (568)
T 2vsy_A 72 -----------------RHAEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAAAAA--------YTRAHQLLPEE 124 (568)
T ss_dssp -----------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTC
T ss_pred -----------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCC
Confidence 99999999999999999886 7889999999999999999877 99999999999
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCchh
Q psy8681 247 YDAWFDYLRLLEDE---GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 247 ~~~W~~y~~~~~~~---g~~~~Ar~~~erAl~~~P~~~ 281 (521)
..+|..++..+... |+.++|...|++++...|...
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 99999999999999 999999999999999998754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-10 Score=101.08 Aligned_cols=114 Identities=8% Similarity=-0.063 Sum_probs=99.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+..+|+.++..+...|++++|...|++++...|. ...+|
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-------------------------------~~~~~ 73 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-------------------------------NVDYI 73 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------------------CHHHH
Confidence 77788889999999999999999999999999999999888774 24678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+..+...|++++|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|+++.
T Consensus 74 ~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCHHH
Confidence 8888888889999999999999999887 68899999999998888 99999999999998887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-10 Score=109.62 Aligned_cols=164 Identities=7% Similarity=-0.011 Sum_probs=142.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
.|.+. ..+...+......|+.+.|... |++++..+|.+..+|..++.++...|++++|..+|++++...|
T Consensus 113 lp~~~--~~~~~~a~~~~~~g~~~~A~~~--------~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 113 LPREE--ELXAQQAMQLMQESNYTDALPL--------LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp SCCHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred cCCch--hhHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 47655 6677777777889999999877 9999999999999999999999999999999999999999989
Q ss_pred chhH-----HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C--HHHHHH
Q psy8681 279 PTKF-----AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-H--VKVWMN 350 (521)
Q Consensus 279 ~~~~-----a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~--~~vwi~ 350 (521)
...+ +......|..+.|...|++++...|. ...+|..++..+...|+++.|...|.+++...| + ..+|..
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 6542 22234567788899999999996664 367999999999999999999999999999987 3 789999
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 351 YAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 351 ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
++.++...|+ .+.|...|++++..
T Consensus 261 l~~~~~~~g~---~~~a~~~~r~al~~ 284 (287)
T 3qou_A 261 FQEILAALGT---GDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CCcHHHHHHHHHHH
Confidence 9999999998 89999999999864
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=91.44 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..|..++..+...|+++.|..+|++++...| .+..+|..++......+ +++.|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQG----------------------DYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhc----------------------CHHHHHH
Confidence 4688999999999999999999999999854 35678888888877777 9999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+|++++...|... .+|..++......|+.+.+... |++++..+|.+..+|..++..+...|+++.|...|
T Consensus 57 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 57 YYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEY--------YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHCTTCH--HHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCch--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999999988875 6788888888889999988877 99999999999999999999999999999999999
Q ss_pred HHHHHcCCc
Q psy8681 271 ERAIANIPP 279 (521)
Q Consensus 271 erAl~~~P~ 279 (521)
++++...|.
T Consensus 127 ~~~~~~~~~ 135 (136)
T 2fo7_A 127 QKALELDPR 135 (136)
T ss_dssp HHHHHHSTT
T ss_pred HHHHccCCC
Confidence 999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-10 Score=103.61 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=126.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..+.|+++.|... ++++ ..+| ++..|..++.++...|++++|..+|++++...| ++.++...+.+.....
T Consensus 16 ~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~-- 87 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----DNSYKSLIAKLELHQQ-- 87 (176)
T ss_dssp HHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----CHHHHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----ChHHHHHHHHHHHHhh--
Confidence 3456777788888 8999 9999 799999999999999999999999999998855 3334333332221110
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+....|...|++++...|.+. .++..++......|+.+.+... |++++..+
T Consensus 88 -------------------~~~~~a~~~~~~al~~~P~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~l~~~ 138 (176)
T 2r5s_A 88 -------------------AAESPELKRLEQELAANPDNF--ELACELAVQYNQVGRDEEALEL--------LWNILKVN 138 (176)
T ss_dssp -------------------HTSCHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTC
T ss_pred -------------------cccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhC
Confidence 023347889999999999987 8899999999999999999877 99999999
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 244 PNN--YDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 244 P~~--~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
|.. ..+|..++.++...|+.++|...|++++..
T Consensus 139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 975 669999999999999999999999999864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=93.28 Aligned_cols=117 Identities=15% Similarity=-0.022 Sum_probs=106.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
.+.| ....|...|..+.+.|++++|...|++|+...| .++.+|..++......|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~---------------------- 61 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLM---------------------- 61 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhc----------------------
Confidence 6678 578999999999999999999999999999965 47889999999998888
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++.|...|+++|+..|.+. ..|..++......|+.+.|... |++++..+|.+.+++..++.+
T Consensus 62 ~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~--------~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFI--KGYIRKAACLVAMREWSKAQRA--------YEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999987 7899999999999999999877 999999999999999888765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=116.56 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=122.4
Q ss_pred CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHH
Q psy8681 219 GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDME 293 (521)
Q Consensus 219 G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e 293 (521)
|+.+.|... |++++..+|.+..+|..++..+...|++++|...|++|+...|.+. ++.++..+|+++
T Consensus 3 g~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQ--------LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 455566655 9999999999999999999999999999999999999999999865 677888999999
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc---CCchhhHHHHH
Q psy8681 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS---GDEDSVSLARR 369 (521)
Q Consensus 294 ~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~---g~~~~~~~AR~ 369 (521)
.|...|++++...|. ...+|..++..+...|++++|...|+++++..| ++.+|..++..+... |+ .+.|..
T Consensus 75 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~ 149 (568)
T 2vsy_A 75 EAAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSA 149 (568)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHH
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHH
Confidence 999999999997654 367899999999999999999999999999987 688999999999999 77 999999
Q ss_pred HHHHHHHHhccch
Q psy8681 370 VFERANQALKASS 382 (521)
Q Consensus 370 vferAl~~~~~~~ 382 (521)
.|++++...|.+.
T Consensus 150 ~~~~al~~~p~~~ 162 (568)
T 2vsy_A 150 QVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHTCCCS
T ss_pred HHHHHHhcCCccc
Confidence 9999999998763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-08 Score=96.24 Aligned_cols=241 Identities=10% Similarity=-0.055 Sum_probs=162.9
Q ss_pred hcccch-hhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 88 RDKERD-REEED-ERKDEGDRDS-DTTYGMRELVFEEQNGF----------VSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 88 r~g~~e-~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~----------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
+.|++. +|..+ +.++ ..+| +..+|..-..+....+. ++++...++.++...| .+..+|..-+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P---Kny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 345665 78999 9999 9999 78999999988877654 6788889999988855 5788998877
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-hhHHHHHHhhHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-AGIEDVIVSKRK 233 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-~~a~~~i~~krr 233 (521)
-+....+ . ..++.+..++.++++.+|.+. ..|.--.-+....|.. +.+...
T Consensus 116 wlL~~l~----~----------------~~~~~EL~~~~k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~------ 167 (331)
T 3dss_A 116 WLLSRLP----E----------------PNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF------ 167 (331)
T ss_dssp HHHHHCS----S----------------CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHH------
T ss_pred HHHhccC----c----------------ccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHH------
Confidence 6665554 0 037899999999999999988 7777666666677863 555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
+.++|..+|.|+.+|...+.++...+....+- .....+ .+.++++...+..++...|.+ ..
T Consensus 168 --~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~-----~~~~~~----------~~~~~eEle~~~~ai~~~P~d--~S 228 (331)
T 3dss_A 168 --TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG-----PQGRLP----------ENVLLKELELVQNAFFTDPND--QS 228 (331)
T ss_dssp --HHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----------CCC----------HHHHHHHHHHHHHHHHHSTTC--HH
T ss_pred --HHHHHHHCCCCHHHHHHHHHHHHHhhhccccc-----cccccc----------hHHHHHHHHHHHHHHHhCCCC--HH
Confidence 99999999999999999988887653210000 000000 022344455555555544432 44
Q ss_pred HHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 314 VWKAYIDFEVGQ-----------GERDKVRELHERLLERTVHVKVWMN--YAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 314 lw~~yi~~e~~~-----------g~~~~Ar~l~eral~~~~~~~vwi~--ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
+|.-.--+.... +.++++++.+..+++..|+. .|.. ++.+.......+..++++.++.+.++..|.
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 554222222121 35789999999999999865 4544 333322221123377899999999999886
Q ss_pred c
Q psy8681 381 S 381 (521)
Q Consensus 381 ~ 381 (521)
.
T Consensus 308 r 308 (331)
T 3dss_A 308 R 308 (331)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=106.75 Aligned_cols=282 Identities=13% Similarity=0.043 Sum_probs=179.8
Q ss_pred HHHhcCChhhhhhhcC------CCcH-------HHhcccc---hhhHHH-HhhhccCCCCChhhHHHHHHHHHHcC----
Q psy8681 66 MEEKQGNKIGEEGANK------ENEE-------EERDKER---DREEED-ERKDEGDRDSDTTYGMRELVFEEQNG---- 124 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife------~P~~-------e~r~g~~---e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g---- 124 (521)
+....|+++.|..+|+ +|.. +...|.+ +.|... ++++ .. ++..+..++.++...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~--~~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAA--DT--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH--hC--CHHHHHHHHHHHHhCCCCCC
Confidence 4456678888888887 3333 5556777 899999 9998 66 6667888888555544
Q ss_pred -ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhh--------------HHHHHhhhhhh----hhH
Q psy8681 125 -FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE--------------DVIVSKRKFQY----EEH 185 (521)
Q Consensus 125 -~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~--------------~~~l~~~~~~~----~~~ 185 (521)
++++|...|++|+..- ++..+..++.+....+ .+....... ...|+..+... ...
T Consensus 88 ~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG-----EGNTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTT-----CSSCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7789999999999852 2235666776665444 111111100 01112222222 256
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC---ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG---DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-- 260 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G---~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-- 260 (521)
+.+..+++.+....|. .+..++.+....| +...+... |++++...|.+...|+.++.++...
T Consensus 162 ~~a~~~~~~a~~~~~~-----a~~~Lg~~~~~~g~~~~~~~A~~~--------~~~aa~~g~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 162 DDVERICKAALNTTDI-----CYVELATVYQKKQQPEQQAELLKQ--------MEAGVSRGTVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHHHHHHTTTCTT-----HHHHHHHHHHHTTCHHHHHHHHHH--------HHHHHHTTCSCHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCcccHHHHHHH--------HHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6678888888877775 4555666666688 56666655 9999999999999999999998665
Q ss_pred --CCHHHHHHHHHHHHHcCCchh--HHHH-H--HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-----Ch
Q psy8681 261 --GNADLIRETYERAIANIPPTK--FAEL-E--SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG-----ER 328 (521)
Q Consensus 261 --g~~~~Ar~~~erAl~~~P~~~--~a~l-e--~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g-----~~ 328 (521)
+++++|...|++|....|... ++.+ + ...|+++.|...|++++.... ...+..++.++. .| ++
T Consensus 229 ~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ----PRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp SSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHH-cCCCCCCCH
Confidence 689999999999982222221 4555 3 458999999999999998642 345666666655 56 99
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 329 ~~Ar~l~eral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~ 377 (521)
++|...|++++ ..++..+..++.++.. .|...++++|..+|++|...
T Consensus 304 ~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 304 KAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999 5688899999987765 22234599999999999874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=100.76 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. ..|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++
T Consensus 51 ~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~--------~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADL--------YAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHH--------HHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 66666666666666666655 5666666666666666666655 7777777777778888888888888888
Q ss_pred HHHHHHHHHHHHcCCchh
Q psy8681 264 DLIRETYERAIANIPPTK 281 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~ 281 (521)
++|...|++|+...|++.
T Consensus 121 ~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 121 LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhCCCHH
Confidence 888888888888777643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-09 Score=103.91 Aligned_cols=213 Identities=15% Similarity=0.108 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHHhcCCh---------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------H
Q psy8681 183 EEHERARVIYKYALDHIPK---------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------Y 247 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~---------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~ 247 (521)
+++++|..++++|.+..+. .....+|...+......|+.+.+... |++++...+.. .
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~a 76 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDA--------YLQEAEAHANNRSLFHAA 76 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHcCCHHHHH
Confidence 4777888888877764332 11234666666777788998888876 88888876532 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCC----CcH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLD----MPE 312 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~----~~~ 312 (521)
.++..++.++...|++++|...|++|+...+... .+.++.. |+++.|...|++++...+.. ...
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 5788999999999999999999999998743211 4566667 99999999999999842211 114
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKE 385 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~ 385 (521)
.++..++.++...|++++|...|++++...+ . ...|+..+......|+ ++.|...|++++ ..|......
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCCCH
Confidence 5778888899999999999999999999753 1 3467778888888888 999999999999 888654322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 386 ERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 386 ~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
+...+......+ ..|+.+.+..+
T Consensus 232 e~~~l~~l~~~~--~~~d~~~~~~~ 254 (307)
T 2ifu_A 232 DCAALEDLLQAY--DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--HhcCHHHHHHH
Confidence 222222222222 36888777774
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-08 Score=96.10 Aligned_cols=230 Identities=10% Similarity=0.003 Sum_probs=177.9
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 114 MRELVFEEQNGFV-SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 114 ~~~a~~e~~~g~~-~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
..+.......|.+ ++|..+++++|...| ....+|..-+......+. ..++++...+
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP---~~~taWn~R~~~L~~l~~--------------------~~~~eeL~~~ 92 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELA---SHYTIWIYRFNILKNLPN--------------------RNLYDELDWC 92 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTCTT--------------------SCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHccc--------------------ccHHHHHHHH
Confidence 3444444455554 699999999999966 467889887776654430 1789999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHH----HHc---CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHE----KKY---GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD- 264 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e----~~~---G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~- 264 (521)
..+|..+|.+. .+|.--..+. ... ++......+ +++++..+|.++.+|..-+-++...|..+
T Consensus 93 ~~~L~~nPk~y--~aW~~R~~iL~~~~~~l~~~~~~~~EL~~--------~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 93 EEIALDNEKNY--QIWNYRQLIIGQIMELNNNDFDPYREFDI--------LEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp HHHHHHCTTCC--HHHHHHHHHHHHHHHHTTTCCCTHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHCcccH--HHHHHHHHHHHHHHHhccccCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 99999999987 7777665554 444 556666655 99999999999999999999999999888
Q ss_pred -HHHHHHHHHHHcCCchh-----HHHHHHHcCC------HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC-hHHH
Q psy8681 265 -LIRETYERAIANIPPTK-----FAELESLLGD------MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE-RDKV 331 (521)
Q Consensus 265 -~Ar~~~erAl~~~P~~~-----~a~le~~~g~------~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~-~~~A 331 (521)
++...+++++...|.+. -..+...+|. ++++...+..+|...|.+ ..+|.-...++...|. .+.+
T Consensus 163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChHHH
Confidence 99999999999999875 1233445565 899999999999976654 6799877777777776 4556
Q ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-Hhccc
Q psy8681 332 RELHERLLERT----VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ-ALKAS 381 (521)
Q Consensus 332 r~l~eral~~~----~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~-~~~~~ 381 (521)
...+.+++... .++.+|..++..+...|+ .++|..+|+++.. ..|..
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhccChHH
Confidence 66777777653 367888888888888887 9999999999987 56653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-09 Score=91.65 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCC-ChhhHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCccc-----cHHHHHHHHHHHHhhhhhccccchhhHH
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFV------SGARKVYERAVEFFGEENL-----DEKLFIAFAKFEEGQREKYGDRAGIEDV 173 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~------~~Ar~vye~Al~~~~~~~~-----~~~lw~~~a~~e~~~~~~~~~~~~~~~~ 173 (521)
..| +++.|..|+.+++..|+. ++.+.+|++|+..+|.... ...+|+.||.|+. .+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~------------ 74 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQ------------ 74 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HH------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hc------------
Confidence 467 899999999999999999 9999999999999874321 2678899998854 35
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 174 IVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 174 ~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
+.++||.+|+.|+..+. .. ..+|..|+.||.+.|+...|..+ +.+++..+|....+.-..
T Consensus 75 ----------D~d~aR~vy~~a~~~hK-kF-AKiwi~~AqFEiRqgnl~kARkI--------Lg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 75 ----------EPDDARDYFQMARANCK-KF-AFVHISFAQFELSQGNVKKSKQL--------LQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp ----------CGGGCHHHHHHHHHHCT-TB-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTTCBCHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHhH-HH-HHHHHHHHHHHHHcccHHHHHHH--------HHHHhccCCCcHHHHHHH
Confidence 89999999999998733 33 59999999999999999998877 999999999876665444
Q ss_pred HH
Q psy8681 254 LR 255 (521)
Q Consensus 254 ~~ 255 (521)
++
T Consensus 135 ~~ 136 (161)
T 4h7y_A 135 LR 136 (161)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=85.63 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e 322 (521)
.+|..++..+...|++++|..+|++++...|... ++.+....|+++.|..+|++++...+. ...+|..++..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHHH
Confidence 4688899999999999999999999999888755 566777889999999999999986543 356888889999
Q ss_pred HhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 323 VGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
...|+++.|..+|++++...| ++.+|..++..+...|+ ++.|..+|++++...|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 999999999999999999886 68899999999999988 99999999999988774
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-10 Score=110.79 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=132.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------------cHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------------DEKLFIA 152 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------------~~~lw~~ 152 (521)
...++++.|... ++++ ...| ....|..++..+...|+++.|...|++|+...|.... ...+|..
T Consensus 124 ~~L~~~~~A~~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 124 LHLKSFEKAKESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEEECCCCGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEEeecccccchhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 356788889988 8888 7788 6899999999999999999999999999999774310 0467777
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
++......+ +++.|...|+++|...|.+. ..|..++......|+.+.|...
T Consensus 202 la~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~----- 252 (336)
T 1p5q_A 202 LAMCHLKLQ----------------------AFSAAIESCNKALELDSNNE--KGLSRRGEAHLAVNDFELARAD----- 252 (336)
T ss_dssp HHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHH-----
Confidence 887777777 99999999999999999876 7888888888889999888876
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHc
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI-RETYERAIAN 276 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A-r~~~erAl~~ 276 (521)
|++++..+|.+..+|..++.++...|+.+++ +..|.+++..
T Consensus 253 ---~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 253 ---FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp ---HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887 5677777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-09 Score=90.55 Aligned_cols=114 Identities=7% Similarity=-0.022 Sum_probs=98.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+...|+.++..+...|++++|...|++++...|. ...+|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------~~~~~ 58 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-------------------------------DSRFF 58 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-------------------------------cHHHH
Confidence 88999999999999999999999999999998888888887774 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++.
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCCc
Confidence 7788888889999999999999999887 68889999999998888 99999999999998887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=7e-09 Score=88.57 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|+++|+..|.+. .+|..++......|+.+.+... |+++|..+|.++.+|+.++..+...|++
T Consensus 28 ~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDD--------CDTCIRLDSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHH--------HHHHHHhhhhhhHHHHHHHHHHHHCCCH
Confidence 88888888888888888876 7788888888888888888766 8888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCchh
Q psy8681 264 DLIRETYERAIANIPPTK 281 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~ 281 (521)
++|...|++|++..|.+.
T Consensus 98 ~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=111.65 Aligned_cols=253 Identities=8% Similarity=0.034 Sum_probs=131.6
Q ss_pred HHHHH--HHHHhcCChhhhhhhcCC---CcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCCh
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANKE---NEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFV 126 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife~---P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~ 126 (521)
.+|.. ..+...|++..|...|.+ |.. ....|++++|+.. +.++ ...|++.+...++..+.+.|++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar--k~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HhCccchhHHHHHHHHHHhCCH
Confidence 45554 444455555555555551 111 3334555555555 5554 4333444444455555555555
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
.++...|.. | +...|...+... +..|.++.|+.+|.++ .
T Consensus 111 ~e~e~f~~~-----p----n~~a~~~IGd~~----------------------~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 111 AELEEFING-----P----NNAHIQQVGDRC----------------------YDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp HHHTTTTTC-----C------------------------------------------CTTTHHHHHHHT----------T
T ss_pred HHHHHHHcC-----C----cHHHHHHHHHHH----------------------HHcCCHHHHHHHHHHh----------h
Confidence 544444421 1 122444444444 4444999999999976 3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHH
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAE 284 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~ 284 (521)
-|..++..+.+.|+.+.|.+. |+++ .++.+|...+..+...|++..|..+... +...|... .+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea--------~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~ 215 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDG--------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELIN 215 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHH--------HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHH--------HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHH
Confidence 588888888899999998877 8888 5899999999999999999999776654 33455443 567
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh--cCChHHHHHHHHHHHh------cCCCHHHHHHHHHHHH
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG--QGERDKVRELHERLLE------RTVHVKVWMNYAQFEM 356 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~--~g~~~~Ar~l~eral~------~~~~~~vwi~ya~~e~ 356 (521)
++...|.++.|..+|+.++...+. +..+|..+.-++.+ .+++.+..++|...+. .|....+|..++..+.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~a--h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTC--CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999997653 56788887766654 3566777777754433 3346788999999998
Q ss_pred HcCCchhhHHHHHHHHHH
Q psy8681 357 SSGDEDSVSLARRVFERA 374 (521)
Q Consensus 357 ~~g~~~~~~~AR~vferA 374 (521)
..+. +++|..+.-..
T Consensus 294 ~~~e---~d~A~~tm~~h 308 (449)
T 1b89_A 294 KYEE---YDNAIITMMNH 308 (449)
T ss_dssp HTTC---HHHHHHHHHHS
T ss_pred hhch---HHHHHHHHHhC
Confidence 8888 88887654433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=98.72 Aligned_cols=195 Identities=10% Similarity=-0.067 Sum_probs=120.9
Q ss_pred HcCChhHHHHHHHHHHHhcCCccccHHHHHHH-------HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENLDEKLFIAF-------AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~-------a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
..++...|+..|.+++...| ..+..|+.+ +....... ....+.-.+.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~----------------------r~~~a~~~~~~ 72 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAW----------------------YSRRNFGQLSG 72 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHH----------------------HTGGGTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHH----------------------HHHHHHHHHHH
Confidence 46899999999999999955 578999998 44444444 44555566777
Q ss_pred HHhcCChhh-------------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 195 ALDHIPKDR-------------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 195 aL~~~P~~~-------------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
++...|... ...++..|+.++...|+.+.|... |+.++...|.+. .++..+.
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~--------l~~~~~~~p~~~-~~~~~a~ 143 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEA--------LEAAPVAGSEHL-VAWMKAV 143 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHH--------HTSSCCTTCHHH-HHHHHHH
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCchH-HHHHHHH
Confidence 777554421 235666677777777777666655 666666666666 6666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCch----h---HHHHHHHcCCHHHHHHHHHHHHcCC--CCCCcHHHHHHHHHHHHhcC
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPT----K---FAELESLLGDMERARAIYELAISQP--RLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~----~---~a~le~~~g~~e~Ar~ife~al~~~--~~~~~~~lw~~yi~~e~~~g 326 (521)
++.+.++++.|...|+.++...++. . .+.....+|+++.|...|++++..+ |. .....+...+..+.+.|
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~-~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA-CARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT-THHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHcC
Confidence 6677777777777776655532221 0 3444556666666666666665432 11 12334555555566666
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNY 351 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~y 351 (521)
+.++|+.+|++++...|...+|..+
T Consensus 223 r~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666666666666554444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=94.42 Aligned_cols=86 Identities=12% Similarity=-0.017 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++
T Consensus 36 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHS--------YSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 44444444444444444443 3444444444444444444433 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 106 ~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 106 AEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=100.55 Aligned_cols=196 Identities=10% Similarity=-0.008 Sum_probs=104.9
Q ss_pred cccchhhHHH-HhhhccCCC--------CC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc---ccHHHHHH
Q psy8681 89 DKERDREEED-ERKDEGDRD--------SD----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN---LDEKLFIA 152 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~--------P~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~---~~~~lw~~ 152 (521)
.|++++|..+ +++. ... |+ ...+...+.++...|+++.|...|.+++...+... ....++..
T Consensus 4 ~~~~~eA~~~~~~a~--k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE--KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHH--HHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH--HHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666666 6554 221 22 34566666777777888888888888877643111 11345555
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i 228 (521)
++......| +++.|...|++|+...+.. .....+..++.+... |+.+.|...
T Consensus 82 lg~~~~~~g----------------------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~- 137 (307)
T 2ifu_A 82 AGMMLKDLQ----------------------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL- 137 (307)
T ss_dssp HHHHHHHTT----------------------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH-
T ss_pred HHHHHHhCC----------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH-
Confidence 555555555 7777777777777653211 112334444444444 555555444
Q ss_pred HhhHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHH
Q psy8681 229 VSKRKFQYEEEVNSNPNN------YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELA 302 (521)
Q Consensus 229 ~~krr~~ye~al~~~P~~------~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~a 302 (521)
|++++...|.. ..++..++.++...|++++|...|++++...|..
T Consensus 138 -------~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------------- 188 (307)
T 2ifu_A 138 -------YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM---------------------- 188 (307)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------------
T ss_pred -------HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----------------------
Confidence 55555544321 2344444444444445555544444444432211
Q ss_pred HcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 303 ISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 303 l~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.........+...+......|+++.|+..|++++ ..|
T Consensus 189 ---~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 189 ---ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred ---CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 0000012345555566667788888888888888 665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-09 Score=89.15 Aligned_cols=114 Identities=9% Similarity=-0.041 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+...|+.++..+...|++++|...|++++...|. ...+|
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------~~~~~ 55 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------------------------------DARYF 55 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------------------------------cHHHH
Confidence 88888889999999999999988888888888888888877764 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++.
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD---LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcc
Confidence 7788888888999999999999998887 68888899998888888 99999999999998887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=109.46 Aligned_cols=261 Identities=15% Similarity=0.082 Sum_probs=96.5
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
+.|++++|... ++. |.+.+|..+|......|++++|...|.++- +...|...+.-....|
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika~--------D~~~y~~V~~~ae~~g----- 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSG----- 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--------CHHHHHHHHHHHHhCC-----
Confidence 34556666666 554 344689999999999999999999997752 2335555555444555
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.++.|+..++.+++..|.. .+...++....+.|+...+++. |. .| +
T Consensus 76 -----------------~~EeAi~yl~~ark~~~~~---~i~~~Li~~Y~Klg~l~e~e~f--------~~-----~p-n 121 (449)
T 1b89_A 76 -----------------NWEELVKYLQMARKKARES---YVETELIFALAKTNRLAELEEF--------IN-----GP-N 121 (449)
T ss_dssp -----------------------------------------------------CHHHHTTT--------TT-----CC--
T ss_pred -----------------CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHhCCHHHHHHH--------Hc-----CC-c
Confidence 8888888888887754431 4555555555666776655543 21 24 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH--------
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPELVWKA-------- 317 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~-------- 317 (521)
...|...|..+...|.++.|+..|.++ +.-. ++..+.++|+++.|...|.++. ....|..
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDG 190 (449)
T ss_dssp ---------------CTTTHHHHHHHT----TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh----hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHc
Confidence 458888888888888888888888875 2211 5666778888888888888872 1234544
Q ss_pred ----------------------HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 318 ----------------------YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 318 ----------------------yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
.+.++.+.|.+++|..+|+.+|...+ |..+|..++..+.+..- +++.+....|...
T Consensus 191 ~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p-~k~~ehl~~~~~~ 269 (449)
T 1b89_A 191 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSR 269 (449)
T ss_dssp TCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 34556667888888888888888775 78888888888877642 4455556666655
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 375 NQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 375 l~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+..-|-- ..-+...+|..+.-+=-.+|+.+.+-.+.-..
T Consensus 270 ini~k~~-~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 270 VNIPKVL-RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp SCHHHHH-HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCcHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 5443300 00012357777777777889988665554333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=92.20 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHcCCh--hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIH-EKKYGDR--AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~-e~~~G~~--~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
+++.|...|++++...|.+. .+|..++.. ....|+. +.+... |++++..+|.+..+|..++.++...
T Consensus 59 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTAQTRAM--------IDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp CHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 44555555555554444433 344444444 3344444 444433 5666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCch
Q psy8681 261 GNADLIRETYERAIANIPPT 280 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~ 280 (521)
|+++.|...|++++...|.+
T Consensus 129 g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TCHHHHHHHHHHHHHTCCTT
T ss_pred ccHHHHHHHHHHHHhhCCCC
Confidence 66666666666666666653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-10 Score=112.17 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=91.7
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.++++.|...|++++...| ....+|..++......+ +++.|...|++|+...|..
T Consensus 126 L~~~~~A~~~~~~a~~~~p---~~a~~~~~~g~~~~~~g----------------------~~~~A~~~y~~Al~~~p~~ 180 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL---EQSTIVKERGTVYFKEG----------------------KYKQALLQYKKIVSWLEYE 180 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH---HHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHTTTC
T ss_pred EeecccccchhcCCHHHHH---HHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHhhcc
Confidence 4567778888888877643 35678888888888887 9999999999999999986
Q ss_pred h-------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 203 R-------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 203 ~-------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
. ...+|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++++|+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES--------CNKALELDSNNEKGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 025666666666667777766655 7777777777777777777777777777777777
Q ss_pred HHHHHHcCCch
Q psy8681 270 YERAIANIPPT 280 (521)
Q Consensus 270 ~erAl~~~P~~ 280 (521)
|++|+...|.+
T Consensus 253 ~~~al~l~P~~ 263 (336)
T 1p5q_A 253 FQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHHCCCC
Confidence 77777666643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=104.74 Aligned_cols=184 Identities=10% Similarity=-0.105 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHH-------HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC----------
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYT-------IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---------- 246 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~-------~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---------- 246 (521)
++..|+..|.+++...|... ..|..++ ......+....+. ..+.+++.+.|..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~--Daw~g~~a~g~~~~~~L~~~~r~~~a~--------~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESAC--DAWIGRIRCGDTDRVTLFRAWYSRRNF--------GQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCCCHHHHHHHHHTGGGT--------THHHHTTTCCGGGGCCEEECCTT
T ss_pred CHHHHHHHHHHHHHhChhhh--HHHHhHHHccCCcHHHHHHHHHHHHHH--------HHHHHHhcCChhhhhhhhccCCc
Confidence 88999999999999999987 8898883 3333222222222 2378888876643
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 247 -----------YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 247 -----------~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
-++++.|+.++...|++++|..+|+.++...|... .+.+....|+++.|...|+.++..++....
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 35677799999999999999999999888778653 466788999999999999988775421111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..++...+..+...|++++|...|++++... | .+.+++..+..+...|. .++|+.+|++++...|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 3467777888999999999999999998654 4 45689999999999999 99999999999999996
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-08 Score=86.02 Aligned_cols=131 Identities=14% Similarity=-0.038 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|...|..+...|+++.|...|++++...| .+..+|..++......+ +++.|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A~ 67 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTE----------------------CYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 56788888888889999999999999998855 35778888888887777 889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL--LEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~--~~~~g~~~~Ar 267 (521)
..|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..+... +...|++++|.
T Consensus 68 ~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 68 GDATRAIELDKKYI--KGYYRRAASNMALGKFRAALRD--------YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccH--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888765 6777888888888888888766 888888888888888554444 66667777777
Q ss_pred HHHHHHHH
Q psy8681 268 ETYERAIA 275 (521)
Q Consensus 268 ~~~erAl~ 275 (521)
..+.++..
T Consensus 138 ~~~~~~~~ 145 (166)
T 1a17_A 138 AGDEHKRS 145 (166)
T ss_dssp HHHHHHHH
T ss_pred HcccchHH
Confidence 77777554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-09 Score=101.87 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
....+...+......| +++.|...|++++...|.+. .+|..++......|+.+.|.
T Consensus 3 ~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR----------------------KYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHH
Confidence 3456666776666666 99999999999999999876 78999999999999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHH
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYE 300 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife 300 (521)
.. |++++..+|.+..+|+.++..+...|++++|...|++++...|.+. .+.... ....+.....
T Consensus 59 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~ 127 (281)
T 2c2l_A 59 AD--------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNS 127 (281)
T ss_dssp HH--------HHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHH
T ss_pred HH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHH
Confidence 77 9999999999999999999999999999999999999999888653 111111 1222222222
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 301 LAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 301 ~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
......+.+ ..+...+..+. .|+++.|...|++++...|. ..+...+.......+ +.++.|..+|.++...
T Consensus 128 ~~~~~~~~~--~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 128 IEERRIHQE--SELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD--KYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTCCCCC--CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHH--HHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhh--HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHH--HHHHHHHHHHHhhhcc
Confidence 233322222 24555555443 68999999999999998874 444444555444431 2378899999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-07 Score=102.89 Aligned_cols=269 Identities=13% Similarity=0.057 Sum_probs=190.8
Q ss_pred HHHHhcCChhhhhhhcCC---CcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKE---NEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVY 133 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~---P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vy 133 (521)
.+.+..|+++.|..++++ |.. ....|++++|... .++ .++..|...+..+.+.|++++|.+.|
T Consensus 1084 VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1084 VLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455678888888888873 322 6667888888887 775 35778889999999999999999999
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHHhhh--hhccccchhhH-HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy8681 134 ERAVEFFGEENLDEKLFIAFAKFEEGQR--EKYGDRAGIED-VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKA 210 (521)
Q Consensus 134 e~Al~~~~~~~~~~~lw~~~a~~e~~~~--~~~~~~~~~~~-~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~ 210 (521)
..|....++...+..+-..|++.. +.. ..|-....... ..++..+++.|.++.|..+|..| ..|..
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~-rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGR 1226 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhc-CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHH
Confidence 999887543222333333344331 000 01111111111 12455667778999999999996 36777
Q ss_pred HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHH
Q psy8681 211 YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESL 288 (521)
Q Consensus 211 ~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~ 288 (521)
++..+.+.|+.+.|.++ |.++ .+..+|......+...|++..|+.+... +...|... .+.++..
T Consensus 1227 LA~tLvkLge~q~AIEa--------arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDG--------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHhCCHHHHHHH--------HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHH
Confidence 88888888998888876 7776 6679999999999999999999887764 55556543 5678889
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCC
Q psy8681 289 LGDMERARAIYELAISQPRLDMPELVWKAYIDFEV--GQGERDKVRELHERLLERT------VHVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 289 ~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~--~~g~~~~Ar~l~eral~~~------~~~~vwi~ya~~e~~~g~ 360 (521)
.|.++.|..+|+.++...+. +..+|..+..++. +.+++.++.++|..-+... ....+|..++.++.+.|+
T Consensus 1293 ~G~feEAI~LlE~aL~Lera--H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred cCCHHHHHHHHHHHhccChh--HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999987653 4456655555444 3467788888888766643 467889999998888887
Q ss_pred chhhHHHHH
Q psy8681 361 EDSVSLARR 369 (521)
Q Consensus 361 ~~~~~~AR~ 369 (521)
+++|..
T Consensus 1371 ---~dnA~~ 1376 (1630)
T 1xi4_A 1371 ---YDNAII 1376 (1630)
T ss_pred ---HHHHHH
Confidence 888873
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=90.63 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=109.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHH-HHhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKF-EEGQRE 162 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~-e~~~~~ 162 (521)
....|+++.|... ++++ ..+| ++..|..++.++...|+++.|...|++++...| .++.+|..++.. ....+
T Consensus 20 ~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~l~~~~~- 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKI--RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG---ENAELYAALATVLYYQAS- 93 (177)
T ss_dssp CC-----CCCCHHHHHHH--HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT-
T ss_pred hhhccCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcC-
Confidence 3456889999999 9999 9999 799999999999999999999999999999976 367888888888 66666
Q ss_pred hccccchhhHHHHHhhhhhhhhH--HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEH--ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~--e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
++ +.|..+|++++...|.+. .+|..++......|+.+.+... |++++
T Consensus 94 ---------------------~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al 142 (177)
T 2e2e_A 94 ---------------------QHMTAQTRAMIDKALALDSNEI--TALMLLASDAFMQANYAQAIEL--------WQKVM 142 (177)
T ss_dssp ---------------------TCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHH
T ss_pred ---------------------CcchHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcccHHHHHHH--------HHHHH
Confidence 77 999999999999999876 7888888888899999999877 99999
Q ss_pred hhCCCCHHHHH
Q psy8681 241 NSNPNNYDAWF 251 (521)
Q Consensus 241 ~~~P~~~~~W~ 251 (521)
..+|.+...+.
T Consensus 143 ~~~p~~~~~~~ 153 (177)
T 2e2e_A 143 DLNSPRINRTQ 153 (177)
T ss_dssp HTCCTTSCHHH
T ss_pred hhCCCCccHHH
Confidence 99999876554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-08 Score=86.78 Aligned_cols=118 Identities=12% Similarity=-0.011 Sum_probs=103.9
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
++++ ...| +...|..++..+...|++++|...|++++...| .++.+|..++......|
T Consensus 8 ~~al--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g---------------- 66 (142)
T 2xcb_A 8 AMLR--GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLG---------------- 66 (142)
T ss_dssp -CCT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------
T ss_pred HHHH--cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHh----------------
Confidence 6777 8888 688999999999999999999999999999865 47889999999988888
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++..+...
T Consensus 67 ------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 67 ------LYEQALQSYSYGALMDINEP--RFPFHAAECHLQLGDLDGAESG--------FYSARALAAAQPAHEALA 126 (142)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHTCGGGHHHH
T ss_pred ------hHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCcchHHHH
Confidence 99999999999999999987 7888888888999999999877 999999999887665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-08 Score=100.19 Aligned_cols=250 Identities=10% Similarity=0.089 Sum_probs=145.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFV---SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~---~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
..+.|+++.|..+ +++. .. .++..+..++.++...|+. ++|...|++|++. ++..+..++.+....+
T Consensus 13 ~~~~g~~~~A~~~~~~aa--~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLA--EL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH--HH-TCCTGGGTCC----------------------------------CHHHHHHHHHTC-
T ss_pred HHhCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHHHHhCC
Confidence 4567999999999 9987 43 2567788888888888877 8999999999975 3345666666332221
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh---HHHHHH---------
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG---IEDVIV--------- 229 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~---a~~~i~--------- 229 (521)
. ...+++++|...|++++...+... +..++.+....+.... +...+.
T Consensus 84 ~-----------------~~~~~~~~A~~~~~~Aa~~g~~~A----~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~ 142 (452)
T 3e4b_A 84 G-----------------ATEAEHHEAESLLKKAFANGEGNT----LIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPE 142 (452)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHTTCSSC----HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTT
T ss_pred C-----------------CCCcCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHH
Confidence 0 000277888888888887644432 2222222222221100 000000
Q ss_pred -------------------hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCchh-----H
Q psy8681 230 -------------------SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYERAIANIPPTK-----F 282 (521)
Q Consensus 230 -------------------~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~erAl~~~P~~~-----~ 282 (521)
......+..+... ++.+++.++.++...| +.++|...|++|....|... +
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0011223444333 4448999999999999 89999999999999877654 3
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8681 283 AELESLL----GDMERARAIYELAISQPRLDMPELVWKAYIDF-E--VGQGERDKVRELHERLLERTVHVKVWMNYAQFE 355 (521)
Q Consensus 283 a~le~~~----g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e--~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e 355 (521)
+.++... ++++.|...|+++. +. ....+..++.+ + ...+++++|...|++++... ++..+..++.++
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa--~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y 293 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA--PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLY 293 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG--GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc--CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 4444333 69999999999998 32 23466666665 4 46899999999999998654 778888888877
Q ss_pred HHcC--CchhhHHHHHHHHHHH
Q psy8681 356 MSSG--DEDSVSLARRVFERAN 375 (521)
Q Consensus 356 ~~~g--~~~~~~~AR~vferAl 375 (521)
. .| ...++++|..+|++|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh
Confidence 6 34 2234999999999998
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.5e-08 Score=89.66 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVI 191 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~i 191 (521)
.+...+..+...|+++.|...|++++. .++.+|..++......| +++.|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~lg~~~~~~g----------------------~~~~A~~~ 59 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD------PHSRICFNIGCMYTILK----------------------NMTEAEKA 59 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS------CCHHHHHHHHHHHHHTT----------------------CHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC------CChHHHHHHHHHHHHcC----------------------CHHHHHHH
Confidence 456677777788888888888888741 14667777777777777 88888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q psy8681 192 YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY----------------DAWFDYLR 255 (521)
Q Consensus 192 y~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~----------------~~W~~y~~ 255 (521)
|++++...|... ..|..++......|+.+.|... |++++...|.+. .+|..++.
T Consensus 60 ~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 60 FTRSINRDKHLA--VAYFQRGMLYYQTEKYDLAIKD--------LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred HHHHHHhCccch--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 888888888765 6777777777788888888766 888888777665 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELA 302 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~a 302 (521)
.+...|+.+.|...|++++...|... .+..+.|...+.+.
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMKSEPR-------HSKIDKAMECVWKQ 169 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSGG-------GGHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHcCcccc-------cchHHHHHHHHHhc
Confidence 99999999999999999999999753 23444555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-08 Score=81.60 Aligned_cols=119 Identities=18% Similarity=0.037 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLL----------------------EFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhc----------------------cHHHH
Confidence 478999999999999999999999999999865 46788888888887777 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 70 ~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 70 LKDCEECIQLEPTFI--KGYTRKAAALEAMKDYTKAMDV--------YQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCch--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999876 7888888888899999999877 999999999999999999998877653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=83.64 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|..++.++...|++
T Consensus 28 ~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGD--------ATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 77777777777777777654 5666666666667777766655 7777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCch
Q psy8681 264 DLIRETYERAIANIPPT 280 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~ 280 (521)
++|...|++++...|.+
T Consensus 98 ~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 98 RAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 77777777777666653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-08 Score=79.89 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLG----------------------NYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhh----------------------chHHH
Confidence 478899999999999999999999999999865 35788888998888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
...|++++...|.+. .+|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|+.
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 66 VQDCERAICIDPAYS--KAYGRMGLALSSLNKHVEAVAY--------YKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCccCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999876 7888888889999999999877 9999999999999999999998887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=77.16 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=104.4
Q ss_pred CCC-C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 106 RDS-D-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 106 ~~P-~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..| . ...|..++..+...|+++.|..+|++++...| .+..+|..++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~---------------------- 57 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQG---------------------- 57 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhC----------------------
Confidence 355 3 68899999999999999999999999999865 35778888888888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..++..++.++...|
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEY--------YQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999998876 7888888888899999998877 99999999999999999988876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.3e-08 Score=80.64 Aligned_cols=115 Identities=10% Similarity=-0.049 Sum_probs=101.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...|..+...|+++.|...|++++...| .++.+|..++......| +++.|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~----------------------~~~~A 57 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLM----------------------SFPEA 57 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhc----------------------CHHHH
Confidence 467899999999999999999999999999965 46789999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN------PNNYDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~------P~~~~~W~~y~~~~~ 258 (521)
...|++++...|.+. ..|..++......|+.+.+... |++++..+ |.+..++..+.....
T Consensus 58 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 58 IADCNKAIEKDPNFV--RAYIRKATAQIAVKEYASALET--------LDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcH--HHHHHHHHHHHHHhCHHHHHHH--------HHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999886 7888888888999999999877 99999999 888888888776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=97.78 Aligned_cols=186 Identities=10% Similarity=-0.086 Sum_probs=134.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...|..+...|+++.|...|.+++...| .+..+|..++......| +++.|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~----------------------~~~~A 57 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQ----------------------QPEQA 57 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhc----------------------CHHHH
Confidence 567888999999999999999999999999855 46788888888888887 89999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN-----YDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~-----~~~W~~y~~~~~~~g~~ 263 (521)
...|++++...|.+. .+|..++......|+.+.|... |++++..+|.+ ..+|..+..
T Consensus 58 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~~~~~~~~~-------- 119 (281)
T 2c2l_A 58 LADCRRALELDGQSV--KAHFFLGQCQLEMESYDEAIAN--------LQRAYSLAKEQRLNFGDDIPSALRI-------- 119 (281)
T ss_dssp HHHHHHHTTSCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCCCSHHHHHHHH--------
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchhhHHHHHHHHHHH--------
Confidence 999999999988876 7788888888888998888876 89999888765 334443321
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-GERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g~~~~Ar~l~er 337 (521)
..+...........|... ++.+ ..|++++|...|+.++...|. ...+......+.... +.++.|..+|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 120 AKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHED--DGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSC--HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222222223344433 2222 358888999999998886553 234444544555444 678899999998
Q ss_pred HHhc
Q psy8681 338 LLER 341 (521)
Q Consensus 338 al~~ 341 (521)
+...
T Consensus 196 a~~~ 199 (281)
T 2c2l_A 196 VDEK 199 (281)
T ss_dssp SSCT
T ss_pred hhcc
Confidence 8764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-08 Score=91.24 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=99.1
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-------------HHHHHHHH
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-------------EKLFIAFA 154 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-------------~~lw~~~a 154 (521)
|.++.|+.. +... ...+ .+..|...|..+...|+++.|...|.+++...|..+.. ..+|..++
T Consensus 18 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 18 YFQGAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ----CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 445555555 4444 3334 46789999999999999999999999999987643211 15666666
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
......+ +++.|...|++++...|.+. .+|..++......|+.+.|...
T Consensus 96 ~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~------- 144 (198)
T 2fbn_A 96 TCYNKNK----------------------DYPKAIDHASKVLKIDKNNV--KALYKLGVANMYFGFLEEAKEN------- 144 (198)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHH-------
T ss_pred HHHHHhc----------------------CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcccHHHHHHH-------
Confidence 6666565 77888888888887777665 5666667777777777777665
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|++++..+|.+..+|..++.++...++..++.
T Consensus 145 -~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 145 -LYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777877777777777776665544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-06 Score=81.98 Aligned_cols=205 Identities=8% Similarity=-0.040 Sum_probs=138.8
Q ss_pred HHcCChh-HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q psy8681 121 EQNGFVS-GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI 199 (521)
Q Consensus 121 ~~~g~~~-~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~ 199 (521)
...|.++ +|..+++.++...| .+..+|..-..+....+. ...... ....++.+..++..+|..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP---~~ytaWn~Rr~iL~~l~~-~~~~~~-----------~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP---DFATLWNCRREVLQHLET-EKSPEE-----------SAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHH-HSCHHH-----------HHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCHHHHHHHHHHHHHCc---hhHHHHHHHHHHHHHhcc-cccchh-----------hhHHHHHHHHHHHHHHHhC
Confidence 3456655 89999999999965 467889877666655440 000000 0013677888888888888
Q ss_pred ChhhHHHHHHHHHHHHHHcCC--hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q psy8681 200 PKDRTAEIYKAYTIHEKKYGD--RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN-ADLIRETYERAIAN 276 (521)
Q Consensus 200 P~~~~~~l~~~~~~~e~~~G~--~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~-~~~Ar~~~erAl~~ 276 (521)
|.+. .+|.--.-+....|. .+.+..+ +.+++..+|.|+.+|..-+-++...|. .+++...+.++|..
T Consensus 105 PKny--~aW~hR~wlL~~l~~~~~~~EL~~--------~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 105 PKSY--GTWHHRCWLLSRLPEPNWARELEL--------CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp TTCH--HHHHHHHHHHHHCSSCCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHhccCcccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 8876 677766666666774 4455544 888888888888888888877777776 46777777777777
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcC
Q psy8681 277 IPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ--------------GERDKVRELHERLLERT 342 (521)
Q Consensus 277 ~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~--------------g~~~~Ar~l~eral~~~ 342 (521)
.|.+. ..|..-..+.... +.++.+.+.+.+++...
T Consensus 175 ~p~N~-------------------------------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 175 NFSNY-------------------------------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp CSCCH-------------------------------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCH-------------------------------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 66543 2333322222222 45789999999999999
Q ss_pred C-CHHHHHHHHHHHHHc-CCc-------hhhHHHHHHHHHHHHHhccc
Q psy8681 343 V-HVKVWMNYAQFEMSS-GDE-------DSVSLARRVFERANQALKAS 381 (521)
Q Consensus 343 ~-~~~vwi~ya~~e~~~-g~~-------~~~~~AR~vferAl~~~~~~ 381 (521)
| +..+|.-..-+.... |.. +.++++...+..+++..|++
T Consensus 224 P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 224 PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 8 688996543333332 210 34789999999999999987
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-07 Score=74.78 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|...+..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A 57 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKG----------------------DYQKA 57 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhc----------------------cHHHH
Confidence 357899999999999999999999999999865 36788899998888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.+.
T Consensus 58 ~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 58 YEDGCKTVDLKPDWG--KGYSRKAAALEFLNRFEEAKRT--------YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999876 7888888888899999998877 9999999999999999888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=79.77 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|+.++..+...|++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIAD--------CNKAIEKDPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHHhCH
Confidence 88999999999999888876 7888888888888888888876 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 264 DLIRETYERAIANI 277 (521)
Q Consensus 264 ~~Ar~~~erAl~~~ 277 (521)
++|...|++++...
T Consensus 89 ~~A~~~~~~al~~~ 102 (126)
T 3upv_A 89 ASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988887
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-06 Score=86.99 Aligned_cols=161 Identities=10% Similarity=-0.063 Sum_probs=90.1
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh-hhhccccc
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ-REKYGDRA 168 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~-~~~~~~~~ 168 (521)
++|..+ ++++ ..+| +..+|..-+.+....| .++++...++.++...| .+..+|..-..+.... +
T Consensus 71 e~AL~lt~~~L--~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---Kny~aW~hR~wlL~~l~~------- 138 (349)
T 3q7a_A 71 ERALELTEIIV--RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---KSYQVWHHRLLLLDRISP------- 138 (349)
T ss_dssp HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHH--HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhcC-------
Confidence 456666 6666 6666 5666776666666666 46667777777766644 3556666554444332 1
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
..++++..++.++|+.+|.+. ..|.--.-+....|..+.+...+.......++++|..+|.|+.
T Consensus 139 --------------~~~~~EL~~~~k~L~~dpkNy--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 139 --------------QDPVSEIEYIHGSLLPDPKNY--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp --------------SCCHHHHHHHHHHTSSCTTCH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --------------CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 034566666677776666665 4554433333333322211001112223456666666777777
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCchh
Q psy8681 249 AWFDYLRLLEDEGN-------ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 249 ~W~~y~~~~~~~g~-------~~~Ar~~~erAl~~~P~~~ 281 (521)
+|...+.++...+. ++++.+.+.++|...|.+.
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 77666666655554 4555666666666666544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-07 Score=82.98 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|...+..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A 64 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASG----------------------QHEKA 64 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHcc----------------------CHHHH
Confidence 578999999999999999999999999999965 46889999999988888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+...|...+..
T Consensus 65 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 65 AEDAELATVVDPKYS--KAWSRLGLARFDMADYKGAKEA--------YEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCchHHHHHHHHH
Confidence 999999999999986 7899999999999999999877 999999999999887665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-06 Score=86.08 Aligned_cols=103 Identities=6% Similarity=-0.131 Sum_probs=79.1
Q ss_pred hhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcc-cchhhHHH-HhhhccCCCC-Chhh
Q psy8681 54 KLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDK-ERDREEED-ERKDEGDRDS-DTTY 112 (521)
Q Consensus 54 ~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g-~~e~Ar~~-eral~~~~~P-~~~~ 112 (521)
...|.. .+|-. .+....+..+.|..+++ +|++ ....| .++++... +.++ ..+| +..+
T Consensus 48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~a 125 (349)
T 3q7a_A 48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQV 125 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHH
T ss_pred eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHH
Confidence 456666 77766 45555566677888777 7877 44566 58999999 9999 9999 8999
Q ss_pred HHHHHHHHHHc-C-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 113 GMRELVFEEQN-G-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 113 W~~~a~~e~~~-g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
|..-+-+.... + +++++..++++++...| .+..+|..-.-+....+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhc
Confidence 99999998887 7 89999999999998754 46778876655554444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=80.82 Aligned_cols=123 Identities=13% Similarity=-0.042 Sum_probs=105.0
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|...+..+...|+++.|...|++++...|.+.....+|..++......+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~---------------------- 79 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE---------------------- 79 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc----------------------
Confidence 3445 68899999999999999999999999999986632222678888888888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..+..+...
T Consensus 80 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGDV--KALYRRSQALEKLGRLDQAVLD--------LQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHhhCccCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999875 7888888888899999999877 999999999999999888877543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.9e-08 Score=80.91 Aligned_cols=86 Identities=9% Similarity=0.098 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|+.
T Consensus 32 ~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIA--------LNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 88899999999998888876 7888888888888888888766 8899999999999999999888888888
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 102 ~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCcC
Confidence 8899999888888775
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=84.36 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----c-----HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhh
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----D-----EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~-----~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~ 180 (521)
...|...|......|++++|...|++||...|+.+. + ..+|.+.+......|
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg------------------- 71 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------- 71 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------------
Confidence 567899999999999999999999999999885221 1 237777777776666
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH----HHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW----FDYLRL 256 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W----~~y~~~ 256 (521)
++++|...|++||+. |.+++..+|.+..+| +..+..
T Consensus 72 ---r~~eAl~~~~kAL~l-------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~a 111 (159)
T 2hr2_A 72 ---SFDEALHSADKALHY-------------------------------------FNRRGELNQDEGKLWISAVYSRALA 111 (159)
T ss_dssp ---CHHHHHHHHHHHHHH-------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHh-------------------------------------hhccccCCCchHHHHHHHHHhHHHH
Confidence 888888888877753 556667799999999 999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+...|++++|...|++|+...|.+.
T Consensus 112 L~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 112 LDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999988754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-07 Score=83.04 Aligned_cols=178 Identities=12% Similarity=-0.070 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----C
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG----N 262 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g----~ 262 (521)
+|...|+++.+. .+. ..+..++.+....|+.+.+... |++++.. .++.+++.++.++.. + +
T Consensus 4 eA~~~~~~aa~~--g~~--~a~~~lg~~~~~~~~~~~A~~~--------~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR--RAQYYLADTWVSSGDYQKAEYW--------AQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CCH--HHHHHHHHHHhcCCCHHHHHHH--------HHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 466788888876 222 4566666666678899888877 9999874 689999999999987 6 8
Q ss_pred HHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHH
Q psy8681 263 ADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKV 331 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~A 331 (521)
.++|...|++|+....... ++.++.. .++++.|...|++++...+.+.....+..++.++.. .+++++|
T Consensus 69 ~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 69 YPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999987543322 5566655 789999999999999875421114577777777777 7799999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-C--CchhhHHHHHHHHHHHHHhc
Q psy8681 332 RELHERLLERTVHVKVWMNYAQFEMSS-G--DEDSVSLARRVFERANQALK 379 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~~e~~~-g--~~~~~~~AR~vferAl~~~~ 379 (521)
...|++++...+++..+..++.++..- | ...++++|..+|++|+..-.
T Consensus 149 ~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999866777888888877653 3 12359999999999998743
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=77.21 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.....|...+......+ +++.|..+|++++...|.+. .+|..++......|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 14 DLALMVKNKGNECFQKG----------------------DYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp CHHHHHHHHHHHHHHTT----------------------CSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHH
Confidence 34566667776666666 88888888888888877765 6777777777777887777
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
... |++++..+|.+..+|..++..+...|++++|...|++++...|..
T Consensus 70 ~~~--------~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 70 LKD--------CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHH--------HHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 766 888888888888888888888888888888888888888777754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=83.14 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
....|...+......+ +++.|..+|++++...|.+. .+|..++......|+.+.+.
T Consensus 10 ~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~ 65 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARK----------------------EYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAA 65 (164)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHH
Confidence 4566777777776666 89999999999999999876 78888888888889988888
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.. |++++..+|.+..+|+.++.++...|++++|...|++++...|.+.
T Consensus 66 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 66 ED--------AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HH--------HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 76 9999999999999999999999999999999999999998888654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-08 Score=102.06 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=106.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------------cHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------------DEKLFI 151 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------------~~~lw~ 151 (521)
+...++++.|... ++++ ...| ....|...+..+...|+++.|...|.+|+...|.... ...+|.
T Consensus 244 ~~~l~~~~~A~~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 244 EVTLKSFEKAKESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEEEEECCCCGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EhhhhhcccCcchhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 4466788889988 8888 7788 6889999999999999999999999999999774321 034555
Q ss_pred HHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 152 AFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 152 ~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
.++......+ +++.|...|+++|...|.+. ..|..++......|+.+.|...
T Consensus 322 nla~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~~g~a~~~~g~~~~A~~~---- 373 (457)
T 1kt0_A 322 NLAMCYLKLR----------------------EYTKAVECCDKALGLDSANE--KGLYRRGEAQLLMNEFESAKGD---- 373 (457)
T ss_dssp HHHHHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHHHHhc----------------------CHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHccCHHHHHHH----
Confidence 5555555555 77777777777777777654 5566666666666776666655
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR-ETYERA 273 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar-~~~erA 273 (521)
|++++..+|.+..+|..++.++...++..++. ..|.++
T Consensus 374 ----~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 374 ----FEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----HHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666666555443 334443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-07 Score=76.42 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~l 285 (521)
..+..++....+.|+.+.|... |+++|..+|.++.+|..++..+...|++++|...|++|+...|...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~--------y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~---- 76 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVH--------YDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR---- 76 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----
Confidence 4566677777788888888876 9999999999999999999999999999999999999888766432
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYA 352 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya 352 (521)
... .....++...+.++...|+++.|...|+++|...|++.+.-.+.
T Consensus 77 ----~~~----------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 77 ----ADY----------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp ----CCH----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred ----hhh----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 000 00023455556667778888888888888888777776554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-06 Score=84.67 Aligned_cols=158 Identities=6% Similarity=-0.039 Sum_probs=113.0
Q ss_pred HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 213 IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD------AWFDYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 213 ~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~------~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
......|+.+.+... |++++...|.... .+..++.++...|++++|...|++|+...+...
T Consensus 83 ~~~~~~~~y~~A~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNK--------VWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHTTCHHHHHHH--------HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHhhhHHHHHHH--------HHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 333456666666655 7777776665432 233455556667788888888888887544321
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHc---CCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q psy8681 282 ------FAELESLLGDMERARAIYELAIS---QPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERTVH------ 344 (521)
Q Consensus 282 ------~a~le~~~g~~e~Ar~ife~al~---~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~------ 344 (521)
.+.++...|+++.|...|++++. ..+.+. ...++...+..+...|++++|...|++++...+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45667778888888888888873 222211 1257777788899999999999999999987532
Q ss_pred -HHHHHHHHHHHHHcCCchhhHHH-HHHHHHHHHHhccc
Q psy8681 345 -VKVWMNYAQFEMSSGDEDSVSLA-RRVFERANQALKAS 381 (521)
Q Consensus 345 -~~vwi~ya~~e~~~g~~~~~~~A-R~vferAl~~~~~~ 381 (521)
..++...+..+...|+ ++.| ...|++|+..+...
T Consensus 235 ~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHh
Confidence 6788999999999998 9999 88899999876544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-07 Score=76.82 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|+.++.++...|++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQD--------CERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHH--------HHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 67777777777777666654 5666666666666666666655 6777777777777777777777767777
Q ss_pred HHHHHHHHHHHHcCCch
Q psy8681 264 DLIRETYERAIANIPPT 280 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~ 280 (521)
+.|...|++++...|.+
T Consensus 97 ~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 77777776666666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.7e-07 Score=73.40 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=72.9
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH
Q psy8681 243 NPNN-YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWK 316 (521)
Q Consensus 243 ~P~~-~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~ 316 (521)
+|.. ..+|..++..+...|+++.|...|++++...|.+. ++.+....|+++.|..+|++++...|. ...+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHH
Confidence 4554 77888999999899999999999999888777543 445555666666666666666664332 234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
.++..+...|+++.|..+|++++...| ++.++..++....
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 666666666666666666666666655 4555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-07 Score=77.37 Aligned_cols=119 Identities=10% Similarity=-0.143 Sum_probs=102.0
Q ss_pred CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..| ++..|..++..+...|+++.|...|.+++...| .+..+|..++......+ +
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~----------------------~ 58 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQ----------------------Q 58 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------C
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhc----------------------C
Confidence 345 689999999999999999999999999999965 46789999999888888 9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN-----NYDAWFDYLRLLED 259 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~-----~~~~W~~y~~~~~~ 259 (521)
++.|...|++++...|.+. ..|..++......|+.+.+... |++++..+|. +..++..+......
T Consensus 59 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 59 PEQALADCRRALELDGQSV--KAHFFLGQCQLEMESYDEAIAN--------LQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 7888899999999999999877 9999999887 67777666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=77.89 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.++..|...+......+ +++.|...|++++...|.+. .+|..++......|+.+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A 62 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGR----------------------KYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQA 62 (137)
T ss_dssp CCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhC----------------------cHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHH
Confidence 35677777777777776 88999999999999888876 7888888888888888888
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
... |++++..+|.++.+|+.++..+...|+++.|...|++++...|.
T Consensus 63 ~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 63 LAD--------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 766 88999999999999999999998889999999999988887665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-07 Score=81.84 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=115.1
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------hh-----HHHHHHHcCCHHHHHHHHHHHHcC---C
Q psy8681 242 SNP-NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP------TK-----FAELESLLGDMERARAIYELAISQ---P 306 (521)
Q Consensus 242 ~~P-~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~------~~-----~a~le~~~g~~e~Ar~ife~al~~---~ 306 (521)
.+| ....+|..++..+...|++++|...|++++..... .. .+.++...|+++.|...|++++.. .
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 355 56889999999999999999999999999984321 11 567788999999999999999874 2
Q ss_pred CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 307 RLD--MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VH----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 307 ~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
+.+ ....++...+..+...|+++.|...|++++... ++ ..++..++......|+ ++.|...|++|+..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN---LLEAQQHWLRARDI 176 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence 211 123456667778889999999999999999764 22 3346778888888898 99999999999998
Q ss_pred hccchhhHHHHHHHHHHH
Q psy8681 378 LKASSEKEERVMLLEAWK 395 (521)
Q Consensus 378 ~~~~~~~~~~~~l~~~~~ 395 (521)
....++......++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 177 FAELEDSEAVNELMTRLN 194 (203)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhccc
Confidence 876655433334444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-07 Score=72.20 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|..++..+...|++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYED--------GCKTVDLKPDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence 66666666666666666544 4555555555555666555544 6666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 89 ~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 89 EEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6666666666655554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-06 Score=79.43 Aligned_cols=171 Identities=10% Similarity=-0.025 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
.+|...|+++.+. .++..+..++.+....+ ++++|...|+++++.... .
T Consensus 3 ~eA~~~~~~aa~~-----g~~~a~~~lg~~~~~~~----------------------~~~~A~~~~~~a~~~g~~----~ 51 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----GDRRAQYYLADTWVSSG----------------------DYQKAEYWAQKAAAQGDG----D 51 (212)
T ss_dssp -CTTHHHHHHHHT-----TCHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHTTCH----H
T ss_pred chHHHHHHHHHHC-----CCHHHHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHcCCH----H
Confidence 3577888898876 35778888888887777 999999999999986432 4
Q ss_pred HHHHHHHHHHHcC----ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q psy8681 207 IYKAYTIHEKKYG----DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIP 278 (521)
Q Consensus 207 l~~~~~~~e~~~G----~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P 278 (521)
.+..++.+... | +.+.+... |++++. +.++.+++.++.++.. .+++++|...|++|+...|
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~--------~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQL--------AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHH--------HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHH--------HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 55556655555 5 66777665 899854 6799999999999987 7899999999999999888
Q ss_pred c----hh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhc
Q psy8681 279 P----TK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-G-----ERDKVRELHERLLER 341 (521)
Q Consensus 279 ~----~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g-----~~~~Ar~l~eral~~ 341 (521)
. .. ++.++.. .++++.|...|++++..++. ...+..++.++... | ++++|...|++++..
T Consensus 121 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 121 SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3 22 5667776 78999999999999987332 12444455554432 3 899999999999986
Q ss_pred C
Q psy8681 342 T 342 (521)
Q Consensus 342 ~ 342 (521)
.
T Consensus 198 g 198 (212)
T 3rjv_A 198 G 198 (212)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=76.80 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...|...+..+.+.|+++.|...|++++...| .+..+|..++......| +++.|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g----------------------~~~~A~ 71 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENE----------------------KDGLAI 71 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 34577777777777888888888888887754 35677777777777776 777888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
..|++++...|.+. ..|..++......|+.+.+... |++++..+|.+.
T Consensus 72 ~~~~~al~l~P~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~P~~~ 119 (121)
T 1hxi_A 72 IALNHARMLDPKDI--AVHAALAVSHTNEHNANAALAS--------LRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHC------
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcCCC
Confidence 88888888777765 5677777777777777777655 777777777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=72.34 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..+...+..+...|+++.|...|++++...|.++....+|..++......| +++.|..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~----------------------~~~~A~~ 60 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR----------------------NFQLAEA 60 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT----------------------CHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc----------------------cHHHHHH
Confidence 346777888888899999999999999887754433467777887777777 8899999
Q ss_pred HHHHHHhcCChhhH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 191 iy~~aL~~~P~~~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
.|++++...|.+.. ...+..++......|+.+.+... |++++..+|.+..++.....+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT--------LQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCCCChHHHHHHHHHHH
Confidence 99999988887621 15667777777788888888876 89999989988877766655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=86.05 Aligned_cols=125 Identities=17% Similarity=0.019 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
|+++.+...|+...... +.....|...+......+ +++.|..+|.+++...|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKN----------------------EINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp ----CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTTTTCT
T ss_pred hhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHhccc
Confidence 44455555554443331 123445666666666666 99999999999999877653
Q ss_pred --------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 204 --------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 204 --------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
...+|..++......|+.+.+... |++++..+|.+..+|+.++..+...|+++.|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH--------ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 125666777777778888877766 8888888888888888888888888888888888
Q ss_pred HHHHHHcCCchh
Q psy8681 270 YERAIANIPPTK 281 (521)
Q Consensus 270 ~erAl~~~P~~~ 281 (521)
|++++...|.+.
T Consensus 145 ~~~al~~~p~~~ 156 (198)
T 2fbn_A 145 LYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHSTTCH
T ss_pred HHHHHHHCCCcH
Confidence 888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-07 Score=74.81 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDE- 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~- 260 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|. +..+|..++..+...
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDC--------YNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 89999999999999988776 6788888888888988888876 9999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCch
Q psy8681 261 GNADLIRETYERAIANIPPT 280 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~ 280 (521)
|+.++|...|++++...|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHhhcccCC
Confidence 99999999999999888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=78.86 Aligned_cols=121 Identities=10% Similarity=0.006 Sum_probs=101.4
Q ss_pred cccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 89 DKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
.|+++.|... ++++ .|++.+|..++..+...|+++.|...|++++...| ....+|..++......|
T Consensus 19 ~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~------ 85 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLYYQTE------ 85 (213)
T ss_dssp TTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT------
T ss_pred hCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcc------
Confidence 3445555555 5765 45788999999999999999999999999999865 46788999999988888
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh--------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR--------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~--------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr 233 (521)
+++.|...|++++...|.+. ...+|..++......|+.+.|...
T Consensus 86 ----------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 143 (213)
T 1hh8_A 86 ----------------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ------ 143 (213)
T ss_dssp ----------------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred ----------------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH------
Confidence 99999999999999877643 336788888888899999999877
Q ss_pred HHHHHHHhhCCCC
Q psy8681 234 FQYEEEVNSNPNN 246 (521)
Q Consensus 234 ~~ye~al~~~P~~ 246 (521)
|++++..+|.+
T Consensus 144 --~~~al~~~p~~ 154 (213)
T 1hh8_A 144 --LALATSMKSEP 154 (213)
T ss_dssp --HHHHHTTCCSG
T ss_pred --HHHHHHcCccc
Confidence 99999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-06 Score=82.59 Aligned_cols=177 Identities=7% Similarity=-0.103 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
...+...+..+...|+++.|...|.+++...+..... ...+...+.+....| +++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 132 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV----------------------DYE 132 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS----------------------CHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC----------------------CHH
Confidence 4567778888889999999999999999875431111 111222333333343 899
Q ss_pred HHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH---hhCCCCH----HHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV---NSNPNNY----DAWFDYLR 255 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al---~~~P~~~----~~W~~y~~ 255 (521)
.|...|++++...+.. ....+|..++.+....|+.+.|... |++++ ...|.+. .++..++.
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~--------~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL--------FEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHhcCccccchHHHHHhHHH
Confidence 9999999999764432 1235788888888999999999877 99999 4566543 68888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH-HHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV-REL 334 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A-r~l 334 (521)
.+...|++++|...|++|+...+.. ........++...+..+...|++++| ...
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~-------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRI-------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhc-------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999999888753210 00001234555566666677777777 666
Q ss_pred HHHHHhc
Q psy8681 335 HERLLER 341 (521)
Q Consensus 335 ~eral~~ 341 (521)
|++++..
T Consensus 260 ~~~Al~~ 266 (293)
T 2qfc_A 260 YKKASFF 266 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-06 Score=78.71 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=105.8
Q ss_pred hcccchhhHHH-HhhhccCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDS--DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P--~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~ 161 (521)
..|+++.|..+ +.+. . .| ...+|..++.++...|+++.|...|++++..... .+....++..++......|
T Consensus 4 ~~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALL--A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHH--T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45778888876 5554 4 44 4789999999999999999999999999996432 1223556667777777777
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc---CChh--hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHH
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH---IPKD--RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~---~P~~--~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~y 236 (521)
+++.|...|++++.. .|.. ....++..++......|+.+.+... |
T Consensus 81 ----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~ 130 (203)
T 3gw4_A 81 ----------------------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE--------Y 130 (203)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH--------H
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH--------H
Confidence 999999999999987 3311 1224555666666667777777655 6
Q ss_pred HHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 237 EEEVNSNP--NN----YDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 237 e~al~~~P--~~----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
++++...+ .+ ..++..++.++...|++++|...|++|+..
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66665422 11 223456666667777777777777776653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=99.00 Aligned_cols=125 Identities=6% Similarity=-0.003 Sum_probs=86.4
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.++++.|...|+.++...| .....|...+......+ +++.|...|++|+...|..
T Consensus 247 l~~~~~A~~~~~~~~~~~~---~~a~~~~~~G~~~~~~g----------------------~~~~A~~~y~~Al~~~p~~ 301 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL---EQAAIVKEKGTVYFKGG----------------------KYMQAVIQYGKIVSWLEME 301 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH---HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccCcchhhcCHHHHH---HHHHHHHHHHHHHHhCC----------------------CHHHHHHHHHHHHHHhccc
Confidence 3456677777777776633 35667788888877777 9999999999999998876
Q ss_pred h-------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 203 R-------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 203 ~-------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
. ...+|..++....+.|+.+.|... |+++|..+|.+..+|+.++..+...|++++|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC--------CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 024566666666666666666655 7777777777777777777776666666666666
Q ss_pred HHHHHHcCCch
Q psy8681 270 YERAIANIPPT 280 (521)
Q Consensus 270 ~erAl~~~P~~ 280 (521)
|++|+...|.+
T Consensus 374 ~~~al~l~P~~ 384 (457)
T 1kt0_A 374 FEKVLEVNPQN 384 (457)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHhCCCC
Confidence 66666666643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=77.58 Aligned_cols=117 Identities=8% Similarity=-0.092 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------ccccHHHHHHHHHHHHhhhhhccccchhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---------------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI 174 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---------------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~ 174 (521)
+..|...|..+.+.|+++.|...|.+|+..++. ++....+|..++......|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~------------- 77 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG------------- 77 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 678999999999999999999999999998321 1234567778887777777
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-HHHHHH
Q psy8681 175 VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-DAWFDY 253 (521)
Q Consensus 175 l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-~~W~~y 253 (521)
+++.|...|+++|...|.+. ..|..++......|+.+.|... |++++..+|.+. .++..+
T Consensus 78 ---------~~~~A~~~~~~al~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 78 ---------DLHEAEETSSEVLKREETNE--KALFRRAKARIAAWKLDEAEED--------LKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp ---------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCGGGHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHhcHHHHHHH--------HHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999987 7888889999999999999877 999999999998 556665
Q ss_pred HHHHH
Q psy8681 254 LRLLE 258 (521)
Q Consensus 254 ~~~~~ 258 (521)
..+..
T Consensus 139 ~~~~~ 143 (162)
T 3rkv_A 139 KIVTE 143 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=73.87 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhh
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~ 223 (521)
.....|...+......+ +++.|..+|++++...|.+. ...+|..++......|+.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 83 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCG----------------------DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDK 83 (148)
T ss_dssp CCHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHH
Confidence 34667777777777776 99999999999999988751 12678888888888999988
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+... |++++..+|.+..+|+.++..+...|+.++|...|++++...|.+.
T Consensus 84 A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 84 AETE--------ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHH--------HHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHH--------HHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 8876 9999999999999999999999999999999999999999888653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-06 Score=83.75 Aligned_cols=159 Identities=5% Similarity=-0.122 Sum_probs=122.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-Chh-----hHH-HHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTT-----YGM-RELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFA 154 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~-----~W~-~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a 154 (521)
....|+++.|..+ ++++ ...| .+. .|. .++.++...|+++.|...|++|+...+..... ..++..++
T Consensus 85 ~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4567888899999 8998 7666 332 244 36777777889999999999999964432221 34677777
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc---CCh--hhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH---IPK--DRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~---~P~--~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
.+....| +++.|...|+++++. .|. .....++..++.+....|+.+.|...
T Consensus 163 ~~y~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~-- 218 (293)
T 3u3w_A 163 NIYAENG----------------------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-- 218 (293)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHcC----------------------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence 7777777 999999999999963 211 12235788888889999999999877
Q ss_pred hhHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNN------YDAWFDYLRLLEDEGN-ADLIRETYERAIAN 276 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~------~~~W~~y~~~~~~~g~-~~~Ar~~~erAl~~ 276 (521)
|++++...+.. ..+|..++..+...|+ .++|...|++|+..
T Consensus 219 ------~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 219 ------VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ------HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89998875433 7899999999999995 69999999999874
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=72.43 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A~ 58 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKG----------------------DYNKCR 58 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 57899999999999999999999999999865 36788888888888887 999999
Q ss_pred HHHHHHHhcCChhh-----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDR-----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
..|++++...|... ...+|..++......|+.+.+... |++++..+| +...+..+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF--------YNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999877541 026788888888899999999877 999999999 68888887776544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.8e-07 Score=71.45 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=92.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| +...|..++..+...|+++.|...|++++...| .+..+|..++......+ ++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~----------------------~~ 56 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLE----------------------RY 56 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTT----------------------CH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHcc----------------------CH
Confidence 46 678899999999999999999999999999865 36778888998888887 99
Q ss_pred HHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 186 ERARVIYKYALDHIPK--DRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~--~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
+.|...|++++...|. .. .+|..++...... |+.+.+... |++++..+|.+
T Consensus 57 ~~A~~~~~~a~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~ 110 (112)
T 2kck_A 57 EEAVDCYNYVINVIEDEYNK--DVWAAKADALRYIEGKEVEAEIA--------EARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHHTSCCTTCH--HHHHHHHHHHTTCSSCSHHHHHH--------HHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHhCCHHHHHHH--------HHHHhhcccCC
Confidence 9999999999999998 65 7888899999999 999998877 99999998875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-06 Score=80.66 Aligned_cols=159 Identities=7% Similarity=-0.017 Sum_probs=123.0
Q ss_pred HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 213 IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA-----WF-DYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 213 ~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~-----W~-~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
......|+.+.+... |++++...|.+++. |. .++.++...|+++.|...|++|+...+...
T Consensus 83 ~~~~~~~~y~~a~~~--------~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNK--------VWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHTTCHHHHHHH--------HHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHhhHHHHHHH--------HHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344467888888876 99999988876652 33 356666677899999999999999644321
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHc----CCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------
Q psy8681 282 ------FAELESLLGDMERARAIYELAIS----QPRL-DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV------- 343 (521)
Q Consensus 282 ------~a~le~~~g~~e~Ar~ife~al~----~~~~-~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~------- 343 (521)
.+.++..+|+++.|...|++++. .+.. .....++..++.++...|++++|...|++++...+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 56678899999999999999995 1111 11245777888889999999999999999998752
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
-..+|...+..+...|+ .+++|...|++|+..+...
T Consensus 235 ~~~~~~~lg~~~~~~g~--~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEY--EEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHh
Confidence 16789999999999984 1699999999999877643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=93.31 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
....|...+..+...|+++.|...|.+|+...|.. . .+ ...+ .+..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~---~-~~-------~~~~----------------------~~~~~ 224 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD---F-MF-------QLYG----------------------KYQDM 224 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH---H-HH-------TCCH----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---h-hh-------hhcc----------------------cHHHH
Confidence 36779999999999999999999999999986531 1 11 1111 33333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...+ . . .+|..++......|+.+.|... |+++|..+|.+..+|+.++..+...|++++|+.
T Consensus 225 ~~~l----~-----~--~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 225 ALAV----K-----N--PCHLNIAACLIKLKRYDEAIGH--------CNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHHH----H-----T--HHHHHHHHHHHTTTCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHH----H-----H--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2211 1 1 4666677777778888887766 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchh-----HHHH-HHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 269 TYERAIANIPPTK-----FAEL-ESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~l-e~~~g~~e~Ar~ife~al~~~~~ 308 (521)
.|++|+...|.+. ++.+ ....+..+.++.+|.+++...|.
T Consensus 286 ~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 286 DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHTTC---------------------------------------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 8888888877655 3333 33456777788888888775543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-07 Score=80.63 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=79.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh----------hHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV----------SGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~----------~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
.+.+.++.|+.. ++++ ...| ++..|..|+..+...+++ ++|+..|++||.+.| ....+|..++
T Consensus 13 ~r~~~feeA~~~~~~Ai--~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP---~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP---KKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---CcHHHHHHHH
Confidence 456788999999 9999 9999 799999999999988764 599999999999965 4788999998
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
......+...+.. ....+++++|...|++||+..|.+.
T Consensus 88 ~ay~~lg~l~P~~-----------~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFLTPDE-----------TEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhcccCcch-----------hhhhccHHHHHHHHHHHHHhCCCCH
Confidence 8887664100000 0011378999999999999998763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=76.68 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhc------------------CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 184 EHERARVIYKYALDH------------------IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~------------------~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|.+++.. .|.. ..+|..++......|+.+.+... |+++|..+|.
T Consensus 26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~~~~~~~A~~~--------~~~al~~~p~ 95 (162)
T 3rkv_A 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLNIGDLHEAEET--------SSEVLKREET 95 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHhcCcHHHHHHH--------HHHHHhcCCc
Confidence 999999999999998 2222 25777777777788888888766 8888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
++.+|+.++..+...|++++|...|++|+...|.+.
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 888888888888888888888888888888888653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=6.3e-08 Score=102.17 Aligned_cols=127 Identities=14% Similarity=-0.036 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...|..++..+...|++++|...|++|++..| .+..+|..++......+ ++++|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~A~ 60 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTE----------------------CYGYAL 60 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhc----------------------CHHHHH
Confidence 34455556666677888889999999888854 45778888888887777 888888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL--LEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~--~~~~g~~~~Ar 267 (521)
..|++|++..|.+. ..|..++......|+.+.|... |++++..+|.+..+|..++.. +...|++++|.
T Consensus 61 ~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 61 GDATRAIELDKKYI--KGYYRRAASNMALGKFRAALRD--------YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHHHHHSCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888776 6777788888888888888766 888888888888888888877 77778888888
Q ss_pred HHHH
Q psy8681 268 ETYE 271 (521)
Q Consensus 268 ~~~e 271 (521)
..|+
T Consensus 131 ~~~~ 134 (477)
T 1wao_1 131 AGDE 134 (477)
T ss_dssp ----
T ss_pred cccc
Confidence 8888
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=72.15 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCC-Cc----HHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLD-MP----ELVW 315 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~-~~----~~lw 315 (521)
....|..++..+...|+++.|...|++++...|.+. ++.++...|+++.|...|++++...|.. .. ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356677777777777888888888888777766543 3344444555555555555555421110 00 2344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
..++..+...|+++.|...|++++...|++.++..++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444445555555555555555555444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=73.61 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-------HHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-------DAWFDYLR 255 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-------~~W~~y~~ 255 (521)
|+++.|...|++||+..|.+. .+|...+......|+.+.|... |+++|..+|.+. .+|..++.
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQF--------CEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHH--------HHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 399999999999999999987 7898899999999999999877 999999988653 46777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 256 LLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+...|+++.|...|++++...|+
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcC
Confidence 788888888888888888887665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=89.78 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC----------hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD----------RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~----------~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
..++|...|..+|...|... .+|..-.......|. .+.+. ..|++++..+|+++.+|..-
T Consensus 44 ~~eeal~~~~~~l~~nP~~~--taW~~R~~~l~~l~~~~~~~~~~~~~~~eL--------~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAEL--------GFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--------HHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHhcccccchhhhhhhHHHHH--------HHHHHHHHhCCCCHHHHHHH
Confidence 34688999999999999987 788776666666665 34444 44999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHcCCchh-----HHHHHHHcC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 254 LRLLEDEG--NADLIRETYERAIANIPPTK-----FAELESLLG-DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 254 ~~~~~~~g--~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g-~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
+.++...+ +++++...+++++...|.+. -+.+...+| .++.+...+.++|...|.+ ...|..-..+....
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHHhh
Confidence 99999999 67999999999999999876 133445678 8999999999999977654 56787766655543
Q ss_pred --------------CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCC
Q psy8681 326 --------------GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 326 --------------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~ 360 (521)
+.++++.+.+.+++...| +..+|..+.-+....+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 557999999999999987 68899887776665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=75.61 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDH---IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~---~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
|++++|...|+++++. .|... .+|..++......|+.+.+... |++++..+|.++.+|..++..+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAV--------LANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCchHHHHHHHHHHHH
Confidence 3788899999999988 46554 7888888888899999988877 999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|++++|...|++++...|.+.
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999998887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-06 Score=70.86 Aligned_cols=102 Identities=7% Similarity=-0.090 Sum_probs=83.2
Q ss_pred HhcccchhhHHH-HhhhccCCCC-Ch---hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DT---TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~---~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
...|+++.|... ++++ ..+| +. ..|..++..+...|+++.|...|++++...|+.+..+.++..++......|
T Consensus 13 ~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 346777777777 8999 8888 55 699999999999999999999999999997754333778888888888888
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIH 214 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~ 214 (521)
+++.|...|+.++...|.+. ........+
T Consensus 91 ----------------------~~~~A~~~~~~~~~~~p~~~--~~~~a~~~l 119 (129)
T 2xev_A 91 ----------------------KNTEAQQTLQQVATQYPGSD--AARVAQERL 119 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHSTTSH--HHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHCCCCh--HHHHHHHHH
Confidence 99999999999999999876 344443333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=85.67 Aligned_cols=125 Identities=7% Similarity=-0.073 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------------ccccHHHHHHHHHHHHhhhhhccccchhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE-------------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS 176 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~-------------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~ 176 (521)
...|...+..+...|+++.|...|++|+...+. .+....+|..++......+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------------- 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--------------- 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 456899999999999999999999999985331 1123445555555555554
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 177 ~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++.|...|+++|+..|.+. .+|..++......|+.+.|... |++++..+|.+..+|..++.+
T Consensus 288 -------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~eA~~~--------l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 288 -------DWQGAVDSCLEALEIDPSNT--KALYRRAQGWQGLKEYDQALAD--------LKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp -------CHHHHHHHHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666554 5555555555566666666544 666666666666666666666
Q ss_pred HHHcCCHHHH
Q psy8681 257 LEDEGNADLI 266 (521)
Q Consensus 257 ~~~~g~~~~A 266 (521)
+...++..++
T Consensus 351 ~~~~~~~~~a 360 (370)
T 1ihg_A 351 KQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-06 Score=72.15 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCC-C-C--Cc
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPR-L-D--MP 311 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~-~-~--~~ 311 (521)
..++..++..+...|++++|...|++++...|... ++.++...|+++.|...|++++...+ . + ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45788899999999999999999999998765432 56778889999999999999987321 1 1 11
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT---V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..++..++..+...|+++.|...|++++... + ...++..++..+...|+ ++.|...|++++......
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHh
Confidence 3566677778889999999999999999864 1 14567778888888898 999999999999887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=79.58 Aligned_cols=176 Identities=8% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP--NNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~ 265 (521)
|...|++.+...+.+. ..+...+......|+.+.|..+ +.+.|..+| .+..+....+.++...|+++.
T Consensus 85 a~~~l~~l~~~~~~~~--~~~~~la~i~~~~g~~eeAL~~--------l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP--YELYLLATAQAILGDLDKSLET--------CVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 5667777776543333 2334666777778999999877 999999887 889999999999999999999
Q ss_pred HHHHHHHHHHcCCc-----hh--------HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChHHH
Q psy8681 266 IRETYERAIANIPP-----TK--------FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 266 Ar~~~erAl~~~P~-----~~--------~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
|++.++++.+..|+ +. |..+....+.+..|..+|+.+...+|. .....+|. .....|++++|
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHH
Confidence 99999999998882 22 223333344999999999999887652 11234555 56689999999
Q ss_pred HHHHHHHHhcC----------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 332 RELHERLLERT----------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 332 r~l~eral~~~----------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
..+++.+++.. | ++.+.++.+.+....|+ .|...+.++....|+++
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 99999877752 4 67777788888888774 67899999999999985
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-06 Score=90.87 Aligned_cols=154 Identities=10% Similarity=-0.040 Sum_probs=127.7
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGF----------VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~----------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
++|... ++++ ..+| +..+|..-+.+....|. ++++...|++++...| .+..+|..-+-.....
T Consensus 46 eeal~~~~~~l--~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p---K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH--HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc
Confidence 467888 9999 9999 78999999999998887 8999999999999865 4788998877666555
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-ChhhHHHHHHhhHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-DRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~~~~a~~~i~~krr~~ye~a 239 (521)
+ . ..++++...|.++++.+|.+. ..|.--..+....| ..+.+.+. +.++
T Consensus 121 ~----~----------------~~~~~el~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~--------~~~~ 170 (567)
T 1dce_A 121 P----E----------------PNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF--------TDSL 170 (567)
T ss_dssp S----S----------------CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHH--------HHTT
T ss_pred c----c----------------ccHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHH--------HHHH
Confidence 4 0 045899999999999999987 77777666667778 66666655 8999
Q ss_pred HhhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCchh
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDE--------------GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~--------------g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|..+|.++.+|...+.++... +.++++.+.+.+|+...|.+.
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999988774 346888999999999999866
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=72.48 Aligned_cols=89 Identities=11% Similarity=-0.056 Sum_probs=76.7
Q ss_pred hcccchhhHHH-HhhhccCC---CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 88 RDKERDREEED-ERKDEGDR---DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~---~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
..|+++.|+.. ++++ .. .| ++..|..++.++...|++++|...|++++...| .++.++..++......|
T Consensus 2 ~~g~~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcC-
Confidence 35889999999 9999 88 47 689999999999999999999999999999976 46788999999888888
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+++.|...|++++...|.+.
T Consensus 76 ---------------------~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 76 ---------------------RYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHCCCH
T ss_pred ---------------------CHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999988775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=76.95 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH--HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI--VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i--~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
.++.|+..|+++++..|.+. ..|..++......|........+ ...+...|+++|.++|++.++|+.++..+.+.|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~a--ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 88999999999999999987 78888877777666543111110 123345599999999999999999999998775
Q ss_pred -----------CHHHHHHHHHHHHHcCCch
Q psy8681 262 -----------NADLIRETYERAIANIPPT 280 (521)
Q Consensus 262 -----------~~~~Ar~~~erAl~~~P~~ 280 (521)
++++|...|++|+...|.+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 6777888888888877764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-05 Score=74.33 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=103.7
Q ss_pred hHHH-HhhhccCCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH
Q psy8681 95 EEED-ERKDEGDRD-SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 95 Ar~~-eral~~~~~-P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~ 172 (521)
|+.. ++.+ ... ++...+..++..+...|++++|..++.+++...| ...+..+....+.+....|
T Consensus 85 a~~~l~~l~--~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~----------- 150 (310)
T 3mv2_B 85 NIEELENLL--KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNN----------- 150 (310)
T ss_dssp CCHHHHHTT--TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHH--hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCC-----------
Confidence 6666 7777 654 4666778999999999999999999999987643 1245677788888888888
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC-
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPK------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN- 245 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~- 245 (521)
+.+.|+.+++.+.+..|. .....+..+++.+...-+....+..+ |+++....|.
T Consensus 151 -----------r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~--------f~El~~~~p~~ 211 (310)
T 3mv2_B 151 -----------NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYY--------YEELSQTFPTW 211 (310)
T ss_dssp -----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH--------HHHHHTTSCSH
T ss_pred -----------CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHH--------HHHHHHhCCCc
Confidence 999999999999988882 22223334455555443466667655 8888777776
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 246 -NYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 246 -~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+..+.+. .++..|++++|..+++.+++.
T Consensus 212 ~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 212 KTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred ccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 2222222 666777777777777765554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=88.49 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++++.|...|++|+...|.+. .+.. .|....+.. .+ ...+|+.++.++...|+
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~---~~~~-------~~~~~~~~~------------~l-----~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDF---MFQL-------YGKYQDMAL------------AV-----KNPCHLNIAACLIKLKR 245 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHH---HHTC-------CHHHHHHHH------------HH-----HTHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHhccch---hhhh-------cccHHHHHH------------HH-----HHHHHHHHHHHHHHcCC
Confidence 499999999999999998753 1111 111111111 11 12489999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF-EVGQGERDKVRELHE 336 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e~~~g~~~~Ar~l~e 336 (521)
+++|...|++|+...|.+. ++..+..+|+++.|+..|++++...|.+ ..++..+..+ ....+..+.++.+|.
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999765 5777889999999999999999976543 3466666555 445678899999999
Q ss_pred HHHhcCCC
Q psy8681 337 RLLERTVH 344 (521)
Q Consensus 337 ral~~~~~ 344 (521)
+++...|.
T Consensus 324 ~~l~~~p~ 331 (338)
T 2if4_A 324 GIFKGKDE 331 (338)
T ss_dssp --------
T ss_pred HhhCCCCC
Confidence 99988763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=89.93 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+..+++++|...|++|++..|.+. .+|..++......|+.+.|... |++++..+|.+..+|..++..+..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGD--------ATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445699999999999999999886 8899999999999999999877 999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh-----HHHH--HHHcCCHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTK-----FAEL--ESLLGDMERARAIYE 300 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~-----~a~l--e~~~g~~e~Ar~ife 300 (521)
.|++++|...|++|++..|.+. ++.+ ....|++++|..+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999998765 3344 566799999999999
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.4e-06 Score=70.52 Aligned_cols=137 Identities=13% Similarity=-0.085 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc---cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL---DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~---~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
..+|..++..+...|+++.|...|.+++...+.... ...++..++......| +++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~ 66 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG----------------------EFE 66 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------------------CHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC----------------------CHH
Confidence 567899999999999999999999999987542111 1245666666666666 999
Q ss_pred HHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC------CCHHHHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP------NNYDAWFDYLRL 256 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P------~~~~~W~~y~~~ 256 (521)
.|...|++++...+... ...++..++......|+.+.+... |++++...+ ....++..++..
T Consensus 67 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 67 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY--------HLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 99999999988744321 123455555666666766666655 666655422 113455556666
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q psy8681 257 LEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~ 276 (521)
+...|+.++|...|++++..
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=82.87 Aligned_cols=200 Identities=8% Similarity=-0.050 Sum_probs=141.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--------------cHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENL--------------DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--------------~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
-+.-+.-....|++++|...|..++...+.... ....+..++......|
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------------- 69 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------------- 69 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-----------------
Confidence 344556667789999999999999987553211 0123455566666665
Q ss_pred hhhhhhHHHHHHHHHHHHhcCChh---hH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC------CCCHH
Q psy8681 179 KFQYEEHERARVIYKYALDHIPKD---RT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN------PNNYD 248 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~P~~---~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~------P~~~~ 248 (521)
+++.|...|..++...+.. .. ..+...+..+....|+.+.+..+ |+.++... +.-..
T Consensus 70 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 70 -----AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFV--------CEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp -----CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHH--------HHHHHHHHHHSSCCSSHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHHHHHhCccHHHHH
Confidence 9999999999998764432 11 12344444555556777777665 77776643 23367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCC---CC--CCcH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQP---RL--DMPE 312 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~---~~--~~~~ 312 (521)
++..++.++...|++.+|..+++.++....... .+.++..+|++++|+.+|.+++... +. ....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 899999999999999999999999987643221 4677889999999999999998621 11 1124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.++...+.+....|++..|...|..++...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 566677777888999999999999998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=66.00 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy8681 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFE 372 (521)
Q Consensus 294 ~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vfe 372 (521)
.|...|++++...|. ...+|..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|+..|+
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD---RAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 467788888887664 367899999999999999999999999999987 68899999999999998 999999999
Q ss_pred HHHHHhccchh
Q psy8681 373 RANQALKASSE 383 (521)
Q Consensus 373 rAl~~~~~~~~ 383 (521)
+++...|..++
T Consensus 78 ~al~~~~~~~~ 88 (115)
T 2kat_A 78 SGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHhcccccc
Confidence 99999887554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.9e-06 Score=82.64 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhcCChh--------------hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 184 EHERARVIYKYALDHIPKD--------------RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~--------------~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
+++.|...|++|+...|.. ....+|..++......|+.+.|... |+++|..+|.++.+
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a 309 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS--------CLEALEIDPSNTKA 309 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHHhCchhHHH
Confidence 9999999999999853321 0114555555555555555555544 66666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|+.++..+...|++++|...|++|+...|.
T Consensus 310 ~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.4e-06 Score=83.51 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=134.1
Q ss_pred HhcccchhhHHH-HhhhccCCCCC-h-----------------hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-
Q psy8681 87 ERDKERDREEED-ERKDEGDRDSD-T-----------------TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD- 146 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P~-~-----------------~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~- 146 (521)
...|++++|... .+++ ...|+ . .....++.++...|++++|...|.+++...+.....
T Consensus 15 ~~~~~y~eA~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLL--DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHTCHHHHHHHHHHHH--HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHHHHH--hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 346777778777 7877 66552 1 247889999999999999999999999876532111
Q ss_pred --HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCC
Q psy8681 147 --EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGD 220 (521)
Q Consensus 147 --~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~ 220 (521)
..+...++.+.... +.++.|..+|+.++...+.. ....++..++.+....|+
T Consensus 93 ~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVP----------------------DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHHHHHHHHHHCSCC----------------------SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC----------------------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC
Confidence 11222222222223 37889999999988763322 123688888999999999
Q ss_pred hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----chh-------H
Q psy8681 221 RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP-----PTK-------F 282 (521)
Q Consensus 221 ~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P-----~~~-------~ 282 (521)
...|... +++++.. .|....++...+.++...|++++|+.+|++++...+ ... .
T Consensus 151 ~~~A~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 151 YKDSLAL--------INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHH--------HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHH--------HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 9998876 7776654 233467899999999999999999999999987532 221 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc
Q psy8681 283 AELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~ 304 (521)
+.++...|++..|...|..++.
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555677999999999999876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00011 Score=77.75 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEG---------NADLIRETYERAIA 275 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g---------~~~~Ar~~~erAl~ 275 (521)
.++...++...+.|+.+.|..+ |+++.... +-+..+|..++..+...+ .++.|..+|+++..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~l--------f~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~ 98 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRL--------YDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHH--------HHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHH--------HHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence 3455566666778888888766 77777653 346777777777776543 36778888888876
Q ss_pred c--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHH
Q psy8681 276 N--IPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKV 347 (521)
Q Consensus 276 ~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~v 347 (521)
. .|+.. ++..+.+.|+++.|..+|+.+.... ..++...|...|..+.+.|+++.|..+|+.+.... |+...
T Consensus 99 ~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 4 34433 4556677888999999888887642 12346788888888889999999999999888764 78888
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 348 WMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 348 wi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
|..++..+...|+ +++|..+|++.-...
T Consensus 178 y~~Li~~~~~~g~---~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 178 LAALLKVSMDTKN---ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC---HHHHHHHHHHHHHhC
Confidence 8888888888888 899999998887653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00014 Score=76.85 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=96.8
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 236 YEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 236 ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
|++..... +-|..+|..++..+.+.|++++|..+|+++... .|+.. +...+...|+.+.|..+|+...... .
T Consensus 93 f~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~ 171 (501)
T 4g26_A 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-V 171 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 77766653 347889999999999999999999999999875 34433 4455678999999999999998853 2
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Q psy8681 309 DMPELVWKAYIDFEVGQGERDKVRELHERLLER--TVHVKVWMNYAQFEM 356 (521)
Q Consensus 309 ~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~~vwi~ya~~e~ 356 (521)
.++...|..+|..+.+.|+.++|..+|+++-.. .|+...|..+.....
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 335789999999999999999999999999875 478777776665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-05 Score=66.76 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=74.6
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI 170 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~ 170 (521)
+.|... ++++ ...| ++..|..++..+...|+++.|...|++++...| .....|..++......|
T Consensus 2 ~~a~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g--------- 67 (115)
T 2kat_A 2 QAITERLEAML--AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQG--------- 67 (115)
T ss_dssp CCHHHHHHHHH--TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcC---------
Confidence 467778 8999 9999 799999999999999999999999999999965 46788999999988888
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
+++.|+..|++++...|..
T Consensus 68 -------------~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 68 -------------DRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHhcccc
Confidence 9999999999999987754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-05 Score=69.50 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
...|+..+..+...|++++|...|++|+...|...-+ .++...| ....+|...+..+...|
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------~a~~~~~--~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------EAFDHAG--FDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------SCCCHHH--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------hhhhhcc--chHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888887752100 0000000 01348888888899999
Q ss_pred ChHHHHHHHHHHHhc-------CC-CHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 327 ERDKVRELHERLLER-------TV-HVKVW----MNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 327 ~~~~Ar~l~eral~~-------~~-~~~vw----i~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
++++|...|+++|.. .| ++..| ...+..+...|. +++|...|++|++..|..
T Consensus 72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCc
Confidence 999999999999999 87 58899 999999999999 999999999999999876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.3e-05 Score=72.57 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHhc-CChhhHHHHHHHHHHHHH---HcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----C
Q psy8681 193 KYALDH-IPKDRTAEIYKAYTIHEK---KYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDE-----G 261 (521)
Q Consensus 193 ~~aL~~-~P~~~~~~l~~~~~~~e~---~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~-----g 261 (521)
..+|.. .|.+...-+|.+.+..-. ..|+...+.. +...+..++++++++|+ +..+|..++.++... |
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~--l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDT--VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHh--HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 344444 455555567777654432 1243332221 23446679999999999 667999999999884 8
Q ss_pred CHHHHHHHHHHHHHcCCch-h-----HHHHHHH-cCCHHHHHHHHHHHHcCCCC
Q psy8681 262 NADLIRETYERAIANIPPT-K-----FAELESL-LGDMERARAIYELAISQPRL 308 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~-~-----~a~le~~-~g~~e~Ar~ife~al~~~~~ 308 (521)
+.+.|+..|++|+.+.|+. . |+.+... .|+.+.|+..+++++..++.
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999864 2 6666655 47888888888888876554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0002 Score=69.14 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-----cCChhhHHHHHHhhHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK-----YGDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLL 257 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~-----~G~~~~a~~~i~~krr~~ye~al~~~P~~-~~~W~~y~~~~ 257 (521)
....|+..+++|++.+|.......|..++.++.+ .|+.+.++.. |+++|.++|+. .+.+..|+.++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~--------ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA--------FEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH--------HHHHHHHCCTTCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH--------HHHHHHhCCCCCchHHHHHHHHH
Confidence 6789999999999999996655799999999888 5999988876 99999999974 99999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHcCCc
Q psy8681 258 EDE-GNADLIRETYERAIANIPP 279 (521)
Q Consensus 258 ~~~-g~~~~Ar~~~erAl~~~P~ 279 (521)
... |+.+.+...+++|+...|.
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC
Confidence 885 9999999999999998765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=62.57 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=63.0
Q ss_pred CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..| ++.+|..+|..+...|+++.|...|++++...| .+..+|..++......| +
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----------------------~ 56 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLD----------------------R 56 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTT----------------------C
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcC----------------------C
Confidence 357 789999999999999999999999999999965 46779999999998888 9
Q ss_pred HHHHHHHHHHHHhcCChhh
Q psy8681 185 HERARVIYKYALDHIPKDR 203 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~ 203 (521)
++.|...|++++...|...
T Consensus 57 ~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 57 TDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhcCC
Confidence 9999999999998866543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=57.19 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
...+|..++......+ +++.|...|++++...|.+. .+|..++......|+.+.+.
T Consensus 8 ~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG----------------------DYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHH
Confidence 3567777777777776 99999999999999999876 78888898899999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
.. |++++..+|.+..+|..++..+...|
T Consensus 64 ~~--------~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EY--------YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HH--------HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 77 99999999999999999998876554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=56.22 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~----------------------~~~~A 62 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQG----------------------DYDEA 62 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHh----------------------hHHHH
Confidence 478899999999999999999999999999865 46788999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
...|++++...|.+. ..+..++....
T Consensus 63 ~~~~~~a~~~~p~~~--~~~~~l~~~~~ 88 (91)
T 1na3_A 63 IEYYQKALELDPNNA--EAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 999999999999876 56666655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.1e-05 Score=65.38 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLL 257 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~ 257 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+ ..+++.++..+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 19 LYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQM--------CQQGLRYTSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTSCSSTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 56666666666666655544 4555555555555655555544 56666666655 55555555555
Q ss_pred HHcCCHHHH
Q psy8681 258 EDEGNADLI 266 (521)
Q Consensus 258 ~~~g~~~~A 266 (521)
...|..+.|
T Consensus 89 ~~~~~~~~a 97 (111)
T 2l6j_A 89 GAVGSVQIP 97 (111)
T ss_dssp HHHHCCCCC
T ss_pred HHHHhHhhh
Confidence 544444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=59.48 Aligned_cols=90 Identities=10% Similarity=-0.020 Sum_probs=71.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
+++..|..++..+...|++++|...|++++...| .++.+|..++......| +++.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~ 56 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLG----------------------EYTQ 56 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhc----------------------CHHH
Confidence 3467899999999999999999999999999965 46789999999988888 9999
Q ss_pred HHHHHHHHHhcCChhhH----HHHHHHHHHHHHHcCChh
Q psy8681 188 ARVIYKYALDHIPKDRT----AEIYKAYTIHEKKYGDRA 222 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~----~~l~~~~~~~e~~~G~~~ 222 (521)
|...|++++...|.+.. ..++..++......|...
T Consensus 57 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 57 AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999998610 144555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00022 Score=57.36 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+|..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|..++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhcCCc
Confidence 357899999999999999999999999999987 68899999999999998 99999999999998876544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0013 Score=59.62 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=96.8
Q ss_pred HHHHHHHHHhh---CCCC-HHHHHHHHHHHHHc---CCH---HHHH-HHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHH
Q psy8681 232 RKFQYEEEVNS---NPNN-YDAWFDYLRLLEDE---GNA---DLIR-ETYERAIANIPPTKFAELESLLGDMERARAIYE 300 (521)
Q Consensus 232 rr~~ye~al~~---~P~~-~~~W~~y~~~~~~~---g~~---~~Ar-~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife 300 (521)
.|..||..|.. .-.| .+.|..|+.+...+ |.. .... .++++++..+-++.
T Consensus 11 ~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~------------------- 71 (202)
T 3esl_A 11 TKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDME------------------- 71 (202)
T ss_dssp HHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCG-------------------
T ss_pred HHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccc-------------------
Confidence 35568888876 3344 48999999998765 221 1233 56777666432211
Q ss_pred HHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 301 LAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 301 ~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. -..| -...+|..|+++. ..++...++.+|.-+.... .....|..||.++...|+ +.+|..||+.|+.
T Consensus 72 ---r-YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 72 ---T-YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF---FLEAKVLLELGAE 143 (202)
T ss_dssp ---G-GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred ---c-ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 0 0001 0257899998765 3455789999999998864 478999999999999999 9999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHH
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQ 400 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~ 400 (521)
....+- ..|..++..|+.+
T Consensus 144 ~~A~P~-----~rL~~~~~~F~~R 162 (202)
T 3esl_A 144 NNCRPY-----NRLLRSLSNYEDR 162 (202)
T ss_dssp TTCBSH-----HHHHHHHHHHHHH
T ss_pred cCCccH-----HHHHHHHHHHHHH
Confidence 865442 3688888888865
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00029 Score=74.07 Aligned_cols=149 Identities=11% Similarity=0.002 Sum_probs=96.1
Q ss_pred HHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 120 EEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 120 e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
+...|++++|..+|+++|.. +|. ++.....+.+++.....+| ++++|..+|++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g----------------------~~~eA~~~~~~ 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ----------------------AYEEASHYARR 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc----------------------CHHHHHHHHHH
Confidence 34679999999999999986 332 3334667777888888887 99999999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
+|.. .++.+|. .+|.-...+.+++.++...|++++|..+|++|+
T Consensus 377 aL~i---------------~~~~lG~---------------------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 377 MVDG---------------YMKLYHH---------------------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHH---------------HHHHSCT---------------------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH---------------HHHHcCC---------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9864 1123331 133344567888999999999999999999987
Q ss_pred HcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHH
Q psy8681 275 ANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWM 349 (521)
Q Consensus 275 ~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi 349 (521)
.+ ++..+..... ....+.......+...+.+..|..+|.++.+.. .+-.+|+
T Consensus 421 ~i----------------------~~~~lG~~Hp-~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 421 AI----------------------LLVTHGPSHP-ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HH----------------------HHHHTCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HH----------------------HHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 63 3333321100 012233334444556677788888888776644 4455553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0011 Score=66.28 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=100.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCchh--HHHH------HHHcC-----CHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLE--DEG---NADLIRETYERAIANIPPTK--FAEL------ESLLG-----DMERARA 297 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~--~~g---~~~~Ar~~~erAl~~~P~~~--~a~l------e~~~g-----~~e~Ar~ 297 (521)
-+++....|.+.++|-.|.+... ..+ ...+|+.+|++|++..|... ++.+ ....+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 44555667888777777665543 333 35789999999999999866 2211 11111 1222223
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 298 IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 298 ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
.+..+.........+.++..+.......|+++.|...+++++...|+...|+.++......|+ .+.|...|++|+..
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM---NREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 333332222112246777777766667799999999999999999998888888999999998 99999999999999
Q ss_pred hccc
Q psy8681 378 LKAS 381 (521)
Q Consensus 378 ~~~~ 381 (521)
.|..
T Consensus 340 ~P~~ 343 (372)
T 3ly7_A 340 RPGA 343 (372)
T ss_dssp SCSH
T ss_pred CCCc
Confidence 9864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=76.06 Aligned_cols=118 Identities=8% Similarity=-0.172 Sum_probs=84.0
Q ss_pred hcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFA 154 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a 154 (521)
.+|++++|..+ ++++. |..|| ...+...++.++...|++++|..+|+++|.. +|. ++.....+.++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46777777777 77763 34566 3688999999999999999999999999986 443 334467777888
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc----CChhh--HHHHHHHHHHHHHHcCChhhHHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH----IPKDR--TAEIYKAYTIHEKKYGDRAGIEDV 227 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~----~P~~~--~~~l~~~~~~~e~~~G~~~~a~~~ 227 (521)
.+...+| ++++|..+|++||.. ++.+. ...+...+.......|....++.+
T Consensus 401 ~~~~~~G----------------------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 401 LTNWHAG----------------------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC----------------------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 999999999999976 22221 124444555555455555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=66.52 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHcCChhhHHHHHHhhHHHHHHH--HHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIH-EKKYGDRAGIEDVIVSKRKFQYEE--EVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~-e~~~G~~~~a~~~i~~krr~~ye~--al~~~P~~~~~W~~y~~~~~~~ 260 (521)
.+.+|+.+|++|++..|.......+..++.+ ....+..... .. ......++. ++...|.++.+|..++..+...
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~-~~--~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK-QL--AALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHH-HH--HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchh-hH--HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 6799999999999999997633332233222 1222211111 00 011122332 2345788999998888888878
Q ss_pred CCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 261 GNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
|+++.|...+++|+..+|... ++.+....|+.+.|...|++|+...|
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999988876432 24445556666666666666666444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=58.37 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAE-IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~-l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
+++.|...|++++...|.+. . +|..++......|+.+.+... |++++..+|.+..+|
T Consensus 15 ~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGK--DEAYYLMGNAYRKLGDWQKALNN--------YQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTH--HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCcHHHH
Confidence 55555555555555555443 3 444455555555555555444 555555555555544
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0023 Score=59.09 Aligned_cols=131 Identities=15% Similarity=0.301 Sum_probs=94.1
Q ss_pred HHHHHHHHhh---CCCCHHHHHHHHHHHHHcC---C--HHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNS---NPNNYDAWFDYLRLLEDEG---N--ADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~---~P~~~~~W~~y~~~~~~~g---~--~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al 303 (521)
|..|+..|.. ..+-.+.|..|+.+...+. . -.....++++++..+..+. |
T Consensus 55 r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rY--------------------- 113 (223)
T 4aez_C 55 RMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLY--------------------- 113 (223)
T ss_dssp HHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGG---------------------
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccc---------------------
Confidence 4558888865 2344689999999988753 1 1235677888777654321 0
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.+++ -...+|..|+++ .+.++.+|.-+.... .+..+|+.||.++...|+ +..|..||..|+.....
T Consensus 114 knD~--RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 114 KDDV--RYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGL---FQKADEVYQKGKRMKAK 182 (223)
T ss_dssp TTCH--HHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTCB
T ss_pred cCCH--HHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc
Confidence 0000 025689999864 357889999998864 478999999999999999 99999999999998755
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q psy8681 381 SSEKEERVMLLEAWKEFEAQ 400 (521)
Q Consensus 381 ~~~~~~~~~l~~~~~~fE~~ 400 (521)
.- ..|..++..|+.+
T Consensus 183 P~-----~rL~~~~~~F~~R 197 (223)
T 4aez_C 183 PF-----LRFQQKYQQFTHR 197 (223)
T ss_dssp SH-----HHHHHHHHHHHHH
T ss_pred cH-----HHHHHHHHHHHHH
Confidence 42 3678888887743
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0033 Score=55.30 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=90.2
Q ss_pred HHHHHHHhhCC--CCHHHHHHHHHHHHHcC---CH-HHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 234 FQYEEEVNSNP--NNYDAWFDYLRLLEDEG---NA-DLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 234 ~~ye~al~~~P--~~~~~W~~y~~~~~~~g---~~-~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
..|+..|.... .-.+.|..|+.....+- .. .....++++++..+.++. | .++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~Y---------------------knD 62 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRY---------------------YSD 62 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGG---------------------TTC
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhh---------------------ccC
Confidence 34777776422 23589999999988742 11 123556777666543221 0 000
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+ -...+|..|+++. +.++.+|.-+.... .+..+|+.||.++...|+ +..|..||..|+.....+-
T Consensus 63 ~--RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~---~~~A~~Iy~~Gi~~~A~P~- 130 (164)
T 2wvi_A 63 P--RFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEAREN---FRKADAIFQEGIQQKAEPL- 130 (164)
T ss_dssp H--HHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBSH-
T ss_pred H--HHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcH-
Confidence 0 0256888888762 44888999988764 478999999999999998 9999999999999765442
Q ss_pred hHHHHHHHHHHHHHHHHc
Q psy8681 384 KEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~ 401 (521)
..|-.++..|+.+.
T Consensus 131 ----~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 131 ----ERLQSQHRQFQARV 144 (164)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 36788888887764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0023 Score=50.92 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 243 NPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
+|.++++|..|+..+.-.++ .++|+.+|++|+...|.+. ++......|+++.|...|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999976554 6899999999999999876 567777888888888888888886543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=52.23 Aligned_cols=72 Identities=10% Similarity=-0.099 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCC---hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGD---RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~---~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
.|.+. .++..|+......++ ...+... |+++|..+|.++.+++.++..+...|++.+|+..|++++.
T Consensus 2 ~p~~~--~~~~~~a~al~~~~~~~~~~~A~~~--------l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTA--TQLAAKATTLYYLHKQAMTDEVSLL--------LEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCH--HHHHHHHHHHHHTTTTCCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCH--HHHHHHHHHHHHhcCCCCCHHHHHH--------HHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35554 788888877654444 4566655 9999999999999999999999999999999999999999
Q ss_pred cCCch
Q psy8681 276 NIPPT 280 (521)
Q Consensus 276 ~~P~~ 280 (521)
..|.+
T Consensus 72 ~~p~~ 76 (93)
T 3bee_A 72 SNDPN 76 (93)
T ss_dssp CCCTT
T ss_pred hCCCC
Confidence 99874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.005 Score=48.41 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH-HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK-LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~-lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
+..+..+...|+++.|...|++++...| .+.. +|..++......| +++.|...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~lg~~~~~~~----------------------~~~~A~~~~ 58 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP---VGKDEAYYLMGNAYRKLG----------------------DWQKALNNY 58 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS---STHHHHHHHHHHHHHHHT----------------------CHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHcC----------------------CHHHHHHHH
Confidence 4556677778888888888888888754 3566 7788887777777 888888888
Q ss_pred HHHHhcCChhh
Q psy8681 193 KYALDHIPKDR 203 (521)
Q Consensus 193 ~~aL~~~P~~~ 203 (521)
++++...|.+.
T Consensus 59 ~~al~~~p~~~ 69 (99)
T 2kc7_A 59 QSAIELNPDSP 69 (99)
T ss_dssp HHHHHHCTTST
T ss_pred HHHHhcCCCcH
Confidence 88888888776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.009 Score=50.92 Aligned_cols=111 Identities=10% Similarity=-0.028 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHH
Q psy8681 262 NADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKVRELHE 336 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar~l~e 336 (521)
++++|...|++|....+... ++.++...+.++.|...|+++.... +...+..+..++.. .+++++|...|+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 45677777777776543322 4445555567777888888888753 23456666666666 688999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHH
Q psy8681 337 RLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 337 ral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~ 377 (521)
++... .++..+..++.++.. .|...++++|..+|++|.+.
T Consensus 86 ~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 86 KACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99876 577788888887776 12123399999999999876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0022 Score=66.32 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=71.0
Q ss_pred cccchhhHHH-Hhhhc------cCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHH
Q psy8681 89 DKERDREEED-ERKDE------GDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAK 155 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~------~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~ 155 (521)
+|+|++|..+ ++++. |..||+ ..++..++..+...|++++|..+|+++|.. +|. ++.....+.+++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5678888888 88763 234553 678999999999999999999999999976 443 3444677788888
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
....+| ++++|..+|++|+++
T Consensus 391 ~~~~qg----------------------~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLE----------------------NKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred HHHhcc----------------------CHHHHHHHHHHHHHH
Confidence 888888 999999999999875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0038 Score=64.50 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=70.5
Q ss_pred cCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 123 NGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
.|++++|..+|+++|.. +|. ++.....+.+++.....+| ++++|..+|+++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g----------------------~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ----------------------DWEGALKYGQKIIK 368 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc----------------------CHHHHHHHHHHHHH
Confidence 47899999999999986 332 3333566777777777777 99999999999986
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
. .++.+|. .+|.-...+.+++.++...|++++|..+|++|+.+
T Consensus 369 i---------------~~~~lG~---------------------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 369 P---------------YSKHYPV---------------------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp H---------------HHHHSCS---------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H---------------HHHHcCC---------------------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4 1123331 13333456788888899999999999999998764
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.026 Score=48.86 Aligned_cols=115 Identities=16% Similarity=0.248 Sum_probs=70.6
Q ss_pred HHHHHHHhhC-CCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Q psy8681 234 FQYEEEVNSN-PNN-YDAWFDYLRLLEDEG--NADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD 309 (521)
Q Consensus 234 ~~ye~al~~~-P~~-~~~W~~y~~~~~~~g--~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~ 309 (521)
..||..|..- ..| .+.|..|+....++. .......++++++..+..+. . -..|
T Consensus 11 ~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~----------------------~-YknD 67 (152)
T 4a1g_A 11 QMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKK----------------------K-YHND 67 (152)
T ss_dssp HHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCG----------------------G-GTTC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccc----------------------c-ccCC
Confidence 3488877762 234 489999999998753 12235566777666433221 0 0000
Q ss_pred -CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 310 -MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 310 -~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
-...+|..|+++ .+.++.+|.-+.... .+...|+.||.++...|+ +.+|..||+.|+.....
T Consensus 68 ~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 68 PRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGE---LQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc
Confidence 024567777643 233777777777653 367777777777777777 77777777777776433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.023 Score=48.36 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED---- 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~---- 259 (521)
++++|...|+++.+..+... . ++.+....+..+.+... |+++... .++.+++.++.++..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~----lg~~y~~g~~~~~A~~~--------~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C----LSLVSNSQINKQKLFQY--------LSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H----HHHHTCTTSCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHcCCCHhh--h----HHHHHHcCCCHHHHHHH--------HHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 78888999999887754432 1 44443333444445544 7877765 677888888888776
Q ss_pred cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcC
Q psy8681 260 EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQ 305 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~ 305 (521)
.+++++|...|++|........ ++.++.. .++++.|...|++|...
T Consensus 74 ~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5677777777777766422211 3444444 45555555555555553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0068 Score=52.74 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHHH
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYERAIANI-PPTK------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife~ 301 (521)
.+..|++.+..+|.+.++.+.|+..+.++. ++.++..+|+..+... |... ++-.+.++|++++|+..++.
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 356699999999999999999999999988 5668999999998887 5222 23445566777777777777
Q ss_pred HHcCCCC
Q psy8681 302 AISQPRL 308 (521)
Q Consensus 302 al~~~~~ 308 (521)
+++..|.
T Consensus 97 lL~ieP~ 103 (152)
T 1pc2_A 97 LLQTEPQ 103 (152)
T ss_dssp HHHHCTT
T ss_pred HHhcCCC
Confidence 6664443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.026 Score=51.14 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHc---CCh---hhHHHHHHhhHHHHHHHHHhh---------CCCC
Q psy8681 184 EHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKY---GDR---AGIEDVIVSKRKFQYEEEVNS---------NPNN 246 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~---G~~---~~a~~~i~~krr~~ye~al~~---------~P~~ 246 (521)
.+...|..|+..|.. ...+....+|..|+.+-... |.. .... +..+++++.. +|..
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~-------~~lLErc~~~F~~~~rYkND~RY 79 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVL-------RSTMERCLIYIQDMETYRNDPRF 79 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHTTCGGGTTCHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchH-------HHHHHHHHHHhcccccccCCHHH
Confidence 667778888888876 33345568999999976543 222 1122 0237888874 3344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
..+|+.|+.+. ..++...++.+|.-.....-. ...+.+|..|+.++...|
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG-----------------------------~~~AlfYe~wA~~lE~~g 129 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIG-----------------------------TKLSLFYEEFSKLLENAQ 129 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSS-----------------------------TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCc-----------------------------HHHHHHHHHHHHHHHHcC
Confidence 68999999886 223345666666665443211 123456666666666666
Q ss_pred ChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERT--VHVKVWMNYAQFEMS 357 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~ 357 (521)
++.+|..+|+.+++.. |-..+--.+..|...
T Consensus 130 ~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 130 FFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 6666666666666654 444444445555543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.028 Score=48.67 Aligned_cols=78 Identities=6% Similarity=0.035 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-C-hhhHHHHHHhhHHHHHHHHHhhC---------CCCHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-D-RAGIEDVIVSKRKFQYEEEVNSN---------PNNYDAWFD 252 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~-~~~a~~~i~~krr~~ye~al~~~---------P~~~~~W~~ 252 (521)
....++..|+..|.....+....+|..|+.+-...- . ..... ..+++++... |....+|+.
T Consensus 5 ~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~--------~lLErc~~~f~~~~~YknD~RyLklWl~ 76 (152)
T 4a1g_A 5 TPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLI--------TLLEHLMKEFLDKKKYHNDPRFISYCLK 76 (152)
T ss_dssp HHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHH--------HHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHH--------HHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 446677789998888766667799999999876541 1 12233 3378887653 334578988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
|+.+. +.++.+|.-...
T Consensus 77 ya~~~------~dp~~if~~L~~ 93 (152)
T 4a1g_A 77 FAEYN------SDLHQFFEFLYN 93 (152)
T ss_dssp HHTTB------SCHHHHHHHHHT
T ss_pred HHHhc------CCHHHHHHHHHH
Confidence 88763 225556655444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.035 Score=44.60 Aligned_cols=73 Identities=11% Similarity=-0.034 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc----cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE----NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~----~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
++.-...+|......|++..|..-|+.|+...+.+ ...+.++..++......| +
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g----------------------~ 61 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG----------------------D 61 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT----------------------C
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc----------------------C
Confidence 45667889999999999999999999999975322 235788888888888887 9
Q ss_pred HHHHHHHHHHHHhcCChhh
Q psy8681 185 HERARVIYKYALDHIPKDR 203 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~ 203 (521)
++.|..+|++++...|.+.
T Consensus 62 ~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 62 LDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999886
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.009 Score=61.58 Aligned_cols=91 Identities=12% Similarity=-0.043 Sum_probs=72.2
Q ss_pred HHhcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIA 152 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~ 152 (521)
..++|++++|..+ ++++. |..|| -..+...++..+...|++++|..+|+++|.. +|. ++.....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3457888999999 88873 12344 2678999999999999999999999999976 443 3344667778
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
++.....+| ++++|..+|++|++.
T Consensus 377 La~~~~~~g----------------------~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQG----------------------MFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC----------------------CHHHHHHHHHHHHHH
Confidence 888888887 999999999999875
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.073 Score=46.72 Aligned_cols=126 Identities=10% Similarity=0.183 Sum_probs=72.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHH-c--CChh-hHHHHHHhhHHHHHHHHHhhCC---------CCHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKK-Y--GDRA-GIEDVIVSKRKFQYEEEVNSNP---------NNYDAWFDYLRL 256 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~-~--G~~~-~a~~~i~~krr~~ye~al~~~P---------~~~~~W~~y~~~ 256 (521)
..|+..|.....+....+|..|+.+-.. + |... .+.. .+++++...- ....+|+.|+.+
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~--------lLErc~~~f~~~~~YknD~RyLklWl~ya~~ 75 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMST--------LLERAVEALQGEKRYYSDPRFLNLWLKLGRL 75 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHH--------HHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHH--------HHHHHHHHhhhhhhhccCHHHHHHHHHHHHh
Confidence 3455555543344456899999988654 3 2222 2333 3888887643 335789998877
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE 336 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e 336 (521)
. ++ .+.+|.-+..+ .-....+.+|..|+.++...|++..|..+|.
T Consensus 76 ~---~~---p~~if~~L~~~-----------------------------~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 76 C---NE---PLDMYSYLHNQ-----------------------------GIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp C---SC---HHHHHHHHHHT-----------------------------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c---CC---HHHHHHHHHHC-----------------------------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 22 44455544332 1112245666667666666777777777777
Q ss_pred HHHhcC--CCHHHHHHHHHHHHHc
Q psy8681 337 RLLERT--VHVKVWMNYAQFEMSS 358 (521)
Q Consensus 337 ral~~~--~~~~vwi~ya~~e~~~ 358 (521)
.+++.. |...+--.+..|....
T Consensus 121 ~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 121 EGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 777654 4455555566666553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.022 Score=58.62 Aligned_cols=97 Identities=9% Similarity=-0.057 Sum_probs=70.0
Q ss_pred HcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
..|.+++|..+|++++.. +|. ++....++.+++.....+| ++++|..+|+++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g----------------------~~~eA~~~~~~~L 356 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG----------------------LLEEALFYGTRTM 356 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc----------------------cHHHHHHHHHHHH
Confidence 468999999999999975 332 2333566667777777777 9999999999988
Q ss_pred hcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 197 DHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 197 ~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
.. + ++.+|. .+|.-...++.++.++...|++++|...|++|+..
T Consensus 357 ~i---------~------~~~lg~---------------------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 357 EP---------Y------RIFFPG---------------------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HH---------H------HHHSCS---------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hh---------H------HHHcCC---------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 54 1 112231 13333456788888889999999999999998764
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.1 Score=47.98 Aligned_cols=131 Identities=13% Similarity=0.229 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHc---CC-h-hhHHHHHHhhHHHHHHHHHhhCC---------CCHH
Q psy8681 184 EHERARVIYKYALDHI-PKDRTAEIYKAYTIHEKKY---GD-R-AGIEDVIVSKRKFQYEEEVNSNP---------NNYD 248 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~-P~~~~~~l~~~~~~~e~~~---G~-~-~~a~~~i~~krr~~ye~al~~~P---------~~~~ 248 (521)
.+...|..|+..|... ..+....+|..|+.+-... |. . .....+ +++++...- ....
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~l--------LErc~~~F~~~~rYknD~RyLk 121 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTL--------LERCTREFVRNPLYKDDVRYLR 121 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHH--------HHHHHHHTTTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHH--------HHHHHHHhcccccccCCHHHHH
Confidence 5667777888877652 2233458999999976654 22 1 124444 888887643 3357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
+|+.|+.+. +..+.+|.-.... .-....+.+|..|+.++...|++
T Consensus 122 lWl~Ya~~~------~~p~~if~~L~~~-----------------------------~IG~~~AlfYe~wA~~lE~~g~~ 166 (223)
T 4aez_C 122 IWMQYVNYI------DEPVELFSFLAHH-----------------------------HIGQESSIFYEEYANYFESRGLF 166 (223)
T ss_dssp HHHHHHTTC------SCHHHHHHHHHHT-----------------------------TCSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcc------CCHHHHHHHHHHC-----------------------------CcchhHHHHHHHHHHHHHHcCCH
Confidence 899998752 2344555544332 11122456777777777777777
Q ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERT--VHVKVWMNYAQFEMS 357 (521)
Q Consensus 329 ~~Ar~l~eral~~~--~~~~vwi~ya~~e~~ 357 (521)
..|..+|+.+++.. |-..+--.+..|...
T Consensus 167 ~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 167 QKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 77777777777654 444444445554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.15 Score=44.15 Aligned_cols=87 Identities=13% Similarity=-0.012 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHcCCchhh
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG---ERDKVRELHERLLERT-V--HVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g---~~~~Ar~l~eral~~~-~--~~~vwi~ya~~e~~~g~~~~~ 364 (521)
.+..++..|...+...+. +......|+-.+.+.. ++.++..+|+.++... | +.+.+..++....+.++ +
T Consensus 13 ~l~~~~~~y~~e~~~~~~--~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y 87 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---Y 87 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---H
T ss_pred HHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---H
Confidence 456778888888775443 4567778888888877 6779999999999987 6 57788888888899998 9
Q ss_pred HHHHHHHHHHHHHhccch
Q psy8681 365 SLARRVFERANQALKASS 382 (521)
Q Consensus 365 ~~AR~vferAl~~~~~~~ 382 (521)
++|+..++++++.-|.+.
T Consensus 88 ~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCCCH
Confidence 999999999999999874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.12 Score=41.26 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIP-----KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P-----~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
+++..|...|+.|+...+ ......++..++....+.|+.+.|... |++++...|.+..+..++.
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL--------TKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH--------HHHHHhcCCCCHHHHhhHH
Confidence 399999999999998742 122347888888888999999999877 9999999999988876665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.19 Score=42.03 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHH
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL---IRETYERAIANI-PPTK------FAELESLLGDMERARAIYE 300 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~---Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife 300 (521)
+.+..|++++..++.+.++-+.|+..+..+.+... ...+++..+... |... +|-...++|++++|+..++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34566999988888999999999999998876555 777788777765 4222 2344556666666666666
Q ss_pred HHHcCCCCC
Q psy8681 301 LAISQPRLD 309 (521)
Q Consensus 301 ~al~~~~~~ 309 (521)
..+...|.+
T Consensus 99 ~lL~~eP~n 107 (126)
T 1nzn_A 99 GLLQTEPQN 107 (126)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 666654433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=8.8 Score=41.96 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
.+...-+.|....|+.+-|..+ -.+|+...|.+...|..++..+...|+++.|.-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~--------Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGV--------SNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHH--------HHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3555567888888999888877 88999999999999999999999999999988776554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.63 E-value=6.6 Score=39.45 Aligned_cols=92 Identities=9% Similarity=-0.064 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcC-----CCCCCcHHHH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQ-----PRLDMPELVW 315 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~-----~~~~~~~~lw 315 (521)
.++.++...|++.+|..++.+....+.... -..++..+|++.+++++|..|... ++......+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 688999999999999999999888654411 245677899999999999998752 1111224555
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHhcCC
Q psy8681 316 KAYIDFEV-GQGERDKVRELHERLLERTV 343 (521)
Q Consensus 316 ~~yi~~e~-~~g~~~~Ar~l~eral~~~~ 343 (521)
...+-+.. ..++|..|-..|-.++..++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 55666788 89999999999988887653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.99 E-value=1.4 Score=48.19 Aligned_cols=67 Identities=9% Similarity=-0.152 Sum_probs=54.2
Q ss_pred HHHHhcCChhhhhhhcCCCcH----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKENEE----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAV 137 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al 137 (521)
.+.+..|..+.|..+.++|.. .+.+|+++.|..+ ... .+...|..++.+..+.|+++.|..+|.++=
T Consensus 637 ~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 455677788888877776654 6778899988887 432 467899999999999999999999999873
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.61 Score=52.51 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...|+..|+-+++.|.+++|..+|+.+.... |++-.|..++..+.+.|. ..+.|..+|+.+...
T Consensus 165 vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~--~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ--DAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHc
Confidence 4556666666666666666666666665543 566666666665555553 124556666666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.45 E-value=2.4 Score=47.79 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIA-----NIPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~-----~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
...+..++..+.+.|++++|..+|..+.. ..|+.. ++.-+.+.|.+++|..+|+...... ..++...++.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 34688899999999999999999977543 245543 4455678899999999999998743 2235778999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcC--CCHHHHH
Q psy8681 318 YIDFEVGQGER-DKVRELHERLLERT--VHVKVWM 349 (521)
Q Consensus 318 yi~~e~~~g~~-~~Ar~l~eral~~~--~~~~vwi 349 (521)
.|+.+.+.|.. +.|..+|+.+.... |+.-++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 99999999985 78999999999864 4444333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.07 E-value=23 Score=35.44 Aligned_cols=98 Identities=12% Similarity=-0.051 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC-CCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC----HHHHH
Q psy8681 282 FAELESLLGDMERARAIYELAISQP-RLDMP---ELVWKAYIDFEVGQGERDKVRELHERLLERT----VH----VKVWM 349 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~-~~~~~---~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~----~~----~~vwi 349 (521)
++.++...|++.+|..++....... ..+.. ..+...=+.++...+++.+++.+|..+.... ++ +.+..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 6777888999999999999887731 11222 2344444567788899999999999887642 33 33444
Q ss_pred HHHHHHH-HcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 350 NYAQFEM-SSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 350 ~ya~~e~-~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.-|.+.. ..++ +..|-..|-.++..+...+
T Consensus 185 ~~Gi~~l~~~rd---yk~A~~~F~eaf~~f~~~~ 215 (394)
T 3txn_A 185 QSGILHAADERD---FKTAFSYFYEAFEGFDSVD 215 (394)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHHHHHHHHTTTC
T ss_pred HhhHHHHHhccC---HHHHHHHHHHHHhcccccc
Confidence 4566666 5666 9999999988887765443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.98 E-value=5.5 Score=33.81 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al 303 (521)
+..|+..+. .+-+.++-+.|+..+..+.+ +.++..+++..+...|... +|--..++|++++|+...+..+
T Consensus 26 r~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 26 RQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344665422 35578899999999988875 4467778888888777543 2333557778888888777777
Q ss_pred cCCCCCCcHHHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYI 319 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi 319 (521)
+..|.+.........|
T Consensus 105 ~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 105 EHERNNKQVGALKSMV 120 (144)
T ss_dssp HTCCCCHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHH
Confidence 7666543444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.74 E-value=5.4 Score=33.40 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al 303 (521)
+..|++-+ ...-+..+-+.|+-.+..+.+ ..++..+++..+...|... +|--..++|++++|+...+..+
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34466654 222367888999988888765 4467788888888777433 2334567788888888888888
Q ss_pred cCCCCCCcHHHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYI 319 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi 319 (521)
...|.+..+......|
T Consensus 106 ~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 106 EHERNNKQVGALKSMV 121 (134)
T ss_dssp TTCTTCHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHH
Confidence 8666543444344433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=86.61 E-value=11 Score=40.95 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHhh--------HHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 209 KAYTIHEKKYGDRAGIEDVIVSK--------RKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 209 ~~~~~~e~~~G~~~~a~~~i~~k--------rr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
...+.+..+.|..+.+..++... ....++.|+. ....+...|..++.+..+.++++.|..+|.++-..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~-- 710 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDL-- 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh--
Confidence 55556666677666554332100 0011233333 24567899999999999999999999999985211
Q ss_pred chhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 279 PTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 279 ~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.....++...|+.+....+-+.+...... .....++...|++++|.++|..+
T Consensus 711 -~~l~~l~~~~~~~~~~~~~~~~a~~~~~~-------~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 711 -ESLFLLHSSFNNKEGLVTLAKDAETTGKF-------NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -hhhHHHHHHcCCHHHHHHHHHHHHHcCch-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 01345566677777777776666654321 12223344578888888887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=85.79 E-value=4.4 Score=33.61 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-P-NNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P-~~~~~W~~y~~~~~~~g 261 (521)
.+..++.-|...+...+.+. ..-..|+-......+...+... ...++..+..+ | ..-+..+.++-.+.+.|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~--~~~F~yAw~Lv~S~~~~d~~~G-----I~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKG-----IVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHH-----HHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 67778888888887655444 4455555444455555443322 13467766665 5 45677777888889999
Q ss_pred CHHHHHHHHHHHHHcCCchh
Q psy8681 262 NADLIRETYERAIANIPPTK 281 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~~ 281 (521)
+++.|+..++..+...|.+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=7.2 Score=39.04 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
.+..+...|++..|...+.+++..+| +-.+|..+...+...|+ ...|..+|++....
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 34444455555555555555555555 33455555555555554 55555555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=8.2 Score=38.59 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHhcCChhh-------------H-------HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 183 EEHERARVIYKYALDHIPKDR-------------T-------AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~-------------~-------~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++.+.|...+..||..+.... . ..+...++......|+...+... +..++..
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~--------l~~~~~~ 200 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE--------LEALTFE 200 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHh
Confidence 356777788888887742210 0 01122233344455666655544 6777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
+|.+..+|..++..+...|+..+|..+|+++-
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888777753
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.74 E-value=11 Score=35.68 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=46.9
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+.|+...+... ....|..+|.|.+....|+.++.-.|+.++|..-++-+.+..|...
T Consensus 9 ~~g~L~~al~~--------~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 9 SEGQLQQALEL--------LIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTTCHHHHHHH--------HHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred hCCCHHHHHHH--------HHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34555555544 8888899999999999999999999999999999999888888754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.98 E-value=17 Score=31.60 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--c----HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL--D----EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--~----~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
....+..++.....|-++.|+-+...++....+++. . ..+...+++.....+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~---------------------- 77 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK---------------------- 77 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc----------------------
Confidence 455667777788899999999999998876432211 1 223444555544444
Q ss_pred hHHHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDH---IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~---~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
+|.+|...|++||.. .|.... .... .|. ... +..... .+.+.++-+..+..+...
T Consensus 78 eyrrA~~~y~qALq~~k~l~k~~s--~~~~-------~~~----~ss--------~p~s~~-~~~e~Elkykia~C~~~l 135 (167)
T 3ffl_A 78 EYRNAVSKYTMALQQKKALSKTSK--VRPS-------TGN----SAS--------TPQSQC-LPSEIEVKYKLAECYTVL 135 (167)
T ss_dssp CHHHHHHHHHHHHHHHHCC-----------------------------------------C-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--cccc-------ccc----cCC--------Cccccc-ccchHHHHHHHHHHHHHH
Confidence 999999999999865 343321 0000 010 101 222222 244667888889999999
Q ss_pred CCHHHHHHHHHH
Q psy8681 261 GNADLIRETYER 272 (521)
Q Consensus 261 g~~~~Ar~~~er 272 (521)
++...|..+++.
T Consensus 136 ~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 136 KQDKDAIAILDG 147 (167)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHhc
Confidence 999999888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.57 E-value=29 Score=30.44 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.+...|..++......|+++-|..+|.++=.. +...-|+...|+.+.-..+-+.+...
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---~~L~~Ly~~tg~~e~L~kla~iA~~~ 89 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHSF---DKLSFLYLVTGDVNKLSKMQNIAQTR 89 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---HHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---HHHHHHHHHhCCHHHHHHHHHHHHHC
Confidence 57889999999999999999999999883110 00233455556666555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 521 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-10 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.2 bits (142), Expect = 3e-10
Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 62/275 (22%)
Query: 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN--- 262
+++K Y EK R + +I + F YE+ + ++ D W++ + LE
Sbjct: 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68
Query: 263 -----------ADLIRETYERAIANIPP------TKFAELESLLGDMERARAIYELAISQ 305
+D YERAI+ + +A+ E E+ +IY ++
Sbjct: 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER------------------------ 341
+D P LV+ Y+ F R + ++ E
Sbjct: 129 EDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187
Query: 342 ------------TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVM 389
+ + Y + ++++ R +FER + EK
Sbjct: 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTSGSLPPEKSG--E 242
Query: 390 LLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKT 424
+ + FE+ GD S K+ + ++ +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.75 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.53 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.53 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.18 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.7 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=2.1e-24 Score=213.28 Aligned_cols=248 Identities=19% Similarity=0.245 Sum_probs=207.3
Q ss_pred hhhHHHHHHHHHHcC--------ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhh
Q psy8681 110 TTYGMRELVFEEQNG--------FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQ 181 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g--------~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~ 181 (521)
+.+|..|+.++...+ ..++++.+|++|+..+| ..+.+|+.|+.|+...+...... +.....
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~---~~~~lW~~y~~~~~~~~~~~~~~--------~~~~~~ 76 (308)
T d2onda1 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEK--------GDMNNA 76 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHT--------SCCHHH
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCchHHHH--------HHHhhc
Confidence 689999999998764 24678899999999976 47899999999987665100000 000112
Q ss_pred hhhHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q psy8681 182 YEEHERARVIYKYALDH-IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-DAWFDYLRLLED 259 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~-~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-~~W~~y~~~~~~ 259 (521)
.+.++.|+.+|++|++. .|.+. .+|..|+.++...|+.+.+..+ |++++...|.+. .+|..|+.++.+
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~--~l~~~ya~~~~~~~~~~~a~~i--------~~~~l~~~~~~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSI--------YNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcccHHHHHHH--------HHHHHHHhcCChHHHHHHHHHHHHH
Confidence 23678999999999986 55554 7999999999999999998877 999999999775 589999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh-----HHHHHHH-cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTK-----FAELESL-LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~-~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~ 333 (521)
.|+++.|+.+|++|+...|.+. ++.++.. .|+.+.|+.+|+.++...|. ...+|..|++++...|++++||.
T Consensus 147 ~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~--~~~~w~~y~~~~~~~g~~~~aR~ 224 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999998766 4555544 58999999999999996554 36899999999999999999999
Q ss_pred HHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 334 LHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 334 l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+|++++..+| ...+|..|+.||..+|+ ++.++++++|+.+.+|....
T Consensus 225 ~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~---~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCccccc
Confidence 9999999864 35699999999999999 99999999999999997643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=7.5e-25 Score=216.49 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH-
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI- 224 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a- 224 (521)
...+|..|+.|+..++..... .....++++.+|++||..+|.+. .+|..|+.|+...|+....
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~--------------~~~~~~Rv~~vyerAl~~~~~~~--~lW~~y~~~~~~~~~~~~~~ 70 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTED--------------QTLITKRVMFAYEQCLLVLGHHP--DIWYEAAQYLEQSSKLLAEK 70 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCC--------------HHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccccc--------------cchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCchHHHH
Confidence 357999999999876400000 00146789999999999999887 8999999998765532110
Q ss_pred -----HHHHHhhHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------HHHHHHHcCCH
Q psy8681 225 -----EDVIVSKRKFQYEEEVNS-NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------FAELESLLGDM 292 (521)
Q Consensus 225 -----~~~i~~krr~~ye~al~~-~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~ 292 (521)
......+.+..|++++.. +|.+..+|..|+.++...|+++.|+.+|++++...|.+. |+.++...|++
T Consensus 71 ~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 71 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred HHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 001123345679999975 889999999999999999999999999999999888653 78899999999
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Q psy8681 293 ERARAIYELAISQPRLDMPELVWKAYIDFEVG-QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRV 370 (521)
Q Consensus 293 e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~-~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~v 370 (521)
+.|+.+|++++...|.+ ..+|..++.++.. .|+.+.|+.+|++++..+| ++.+|+.|+.|+...|+ +++||.+
T Consensus 151 ~~ar~i~~~al~~~~~~--~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~ 225 (308)
T d2onda1 151 KSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVL 225 (308)
T ss_dssp HHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHH
Confidence 99999999999977654 4678888877654 5899999999999999987 68999999999999998 9999999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 371 FERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 371 ferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
|++|+..+|.++. ....+|..|..||..||+.+++.+|.+|+.....
T Consensus 226 fe~ai~~~~~~~~--~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 226 FERVLTSGSLPPE--KSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHSSSSCGG--GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCChH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999886643 3357999999999999999999999988755543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.6e-21 Score=188.57 Aligned_cols=297 Identities=15% Similarity=0.035 Sum_probs=240.5
Q ss_pred HHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhH
Q psy8681 66 MEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~ 128 (521)
.+-..|+++.|..+|+ .|++ +.+.|+++.|+.. ++++ ..+| ++..|..++.++...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHhhhhccccc
Confidence 3457799999999888 6765 7778999999999 9999 9999 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh-------------hccccch--------------------h-----
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE-------------KYGDRAG--------------------I----- 170 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~-------------~~~~~~~--------------------~----- 170 (521)
|...|..++...+. ....+............ ....... .
T Consensus 86 A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 99999999998553 23333332222221110 0000000 0
Q ss_pred --------hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 171 --------EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 171 --------~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
....++......+.++.|...+++++...|... .+|..++......|+.+.+... |++++..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~ 232 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL--DAYINLGNVLKEARIFDRAVAA--------YLRALSL 232 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCTTHHHHH--------HHHHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccH--HHHHHHhhhhhccccHHHHHHH--------HHHhHHH
Confidence 000111223345788999999999999999876 7888889888899999988876 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
+|.+...|..++..+...|++++|...|++|+...|... ++.+....|+++.|...|+.++...|. ...+|..
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 310 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HADSLNN 310 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc--cchhhhH
Confidence 999999999999999999999999999999999999865 577788899999999999999986654 3578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.++...|++++|..+|+++++..| ++.+|..+|..+...|+ ++.|...|++|++..|+++
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH
Confidence 88889999999999999999999987 68899999999999998 9999999999999998864
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.6e-19 Score=174.58 Aligned_cols=301 Identities=14% Similarity=0.077 Sum_probs=241.6
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
.+.|+++.|+.+ ++++ ..+| ++.+|..++.++...|++++|..+|+++++..| .+..+|..++.+....| .+
T Consensus 10 ~~~G~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~l~~~~~~~g-~~ 83 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLW--RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---LLAEAYSNLGNVYKERG-QL 83 (388)
T ss_dssp HHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-CH
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhhhhc-cc
Confidence 457999999999 9999 9999 799999999999999999999999999999965 46788888888877776 11
Q ss_pred cccch--------------hhH----HHHH-----------------------------hhhhhhhhHHHHHHHHHHHHh
Q psy8681 165 GDRAG--------------IED----VIVS-----------------------------KRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 165 ~~~~~--------------~~~----~~l~-----------------------------~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
..+.. ... .... ......+....+...+...+.
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 11100 000 0000 001112345566677777777
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
..|... ..+..++.+....|+.+.+... +++++..+|.+..+|..++..+...|++++|...|++++...
T Consensus 164 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 233 (388)
T d1w3ba_ 164 TQPNFA--VAWSNLGCVFNAQGEIWLAIHH--------FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HCTTCH--HHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred cCcchh--HHHHhhcccccccCcHHHHHHH--------HHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence 777765 6777777777788888877766 999999999999999999999999999999999999999988
Q ss_pred Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHH
Q psy8681 278 PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNY 351 (521)
Q Consensus 278 P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~y 351 (521)
|... .+.++...|+++.|...|++++...|. ...+|..++.++...|++++|...|+.++...| +..+|..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 311 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH
Confidence 7765 567788899999999999999997664 367899999999999999999999999999886 68899999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+......|+ ++.|...|+++++..|++. ..+......-...|+.+.+....++.
T Consensus 312 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 312 ANIKREQGN---IEEAVRLYRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHTTTC---HHHHHHHHHHHTTSCTTCH------HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988 9999999999999998864 34444455555789988877776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.1e-16 Score=152.78 Aligned_cols=236 Identities=14% Similarity=0.041 Sum_probs=146.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.+.|++++|+.. ++++ ..+| ++..|..+|.++...|+++.|...|.+|+...| .+..+|..++......+
T Consensus 29 ~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~-- 101 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP---DNQTALMALAVSFTNES-- 101 (323)
T ss_dssp HHHTTCHHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc---ccccccccccccccccc--
Confidence 4555666666666 6666 6666 456666666666666666666666666666543 24555555555555555
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.++.|..+|+.++...|... .++..........
T Consensus 102 --------------------~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------------------- 134 (323)
T d1fcha_ 102 --------------------LQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGA------------------------- 134 (323)
T ss_dssp --------------------CHHHHHHHHHHHHHTSTTTG--GGCC----------------------------------
T ss_pred --------------------cccccccchhhHHHhccchH--HHHHhhhhhhhhc-------------------------
Confidence 56666666666665555432 1111000000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVWK 316 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~ 316 (521)
+.......+..+...+...++...|.+++...|... ++.+....|+++.|...|++++...|. ...+|.
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 210 (323)
T d1fcha_ 135 --GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWN 210 (323)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred --ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc--cccchh
Confidence 000000111111223345566666666666665432 345566667777777777777764443 357888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
..+.++...|++++|...|+++++..| ++.+|..+|..+...|+ ++.|...|++|+...|++.
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCcCh
Confidence 888999999999999999999999887 68899999999999998 9999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.8e-16 Score=154.02 Aligned_cols=221 Identities=11% Similarity=0.004 Sum_probs=169.0
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~ 127 (521)
..+...|+++.|..+|+ +|++ +...|+++.|... .+++ ...| +...|..++..+...|+++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL--ELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--cccccccccccccccccccccccc
Confidence 56778999999999998 6876 7788999999999 9999 9999 7999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
.|..+|++++...|.. ..++.......... ........... +
T Consensus 105 ~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~------------~ 146 (323)
T d1fcha_ 105 QACEILRDWLRYTPAY---AHLVTPAEEGAGGA-----------------------GLGPSKRILGS------------L 146 (323)
T ss_dssp HHHHHHHHHHHTSTTT---GGGCC--------------------------------------CTTHH------------H
T ss_pred ccccchhhHHHhccch---HHHHHhhhhhhhhc-----------------------ccccchhhHHH------------H
Confidence 9999999999986632 11111111100000 00000000000 0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
. ..+....+.. .|.+++..+|. ++.+|..++.++...|++++|...|++++...|...
T Consensus 147 -~-------~~~~~~~a~~--------~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (323)
T d1fcha_ 147 -L-------SDSLFLEVKE--------LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210 (323)
T ss_dssp -H-------HHHHHHHHHH--------HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -H-------HhhHHHHHHH--------HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchh
Confidence 0 0111222333 38999999886 567899999999999999999999999999999866
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++.++..+|+++.|...|+++++..|. ...+|..++..+...|++++|+..|+++|...|
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 577888999999999999999996554 367899999999999999999999999999754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.6e-12 Score=127.49 Aligned_cols=234 Identities=10% Similarity=0.044 Sum_probs=182.7
Q ss_pred CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..| -..++..++.++.+.+.+++|..+|++||+..| .+..+|...+......+ ++
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP---~~~~a~~~r~~~l~~l~---------------------~~ 93 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA---ANYTVWHFRRVLLKSLQ---------------------KD 93 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT---------------------CC
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHhC---------------------cC
Confidence 345 367888888899999999999999999999966 46789998888777665 15
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~ 264 (521)
++.|...|++++...|.+. .+|...+......|+.+.+... |.+++..+|.++.+|..++.++...|+++
T Consensus 94 ~~eal~~~~~al~~~p~~~--~a~~~~~~~~~~l~~~~eAl~~--------~~kal~~dp~n~~a~~~~~~~~~~~~~~~ 163 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQELEF--------IADILNQDAKNYHAWQHRQWVIQEFKLWD 163 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHHhHHHHhhccHHHHHHH--------HhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence 8999999999999999987 8888888888899999999877 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchh--H---HHHHHHcCC------HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q psy8681 265 LIRETYERAIANIPPTK--F---AELESLLGD------MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333 (521)
Q Consensus 265 ~Ar~~~erAl~~~P~~~--~---a~le~~~g~------~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~ 333 (521)
+|...|++|+...|.+. | +.+....|. ++.|...|.+++...|.+ ..+|.....++ .....+.+..
T Consensus 164 ~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~--~~~~~~l~~ll-~~~~~~~~~~ 240 (315)
T d2h6fa1 164 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGIL-QDRGLSKYPN 240 (315)
T ss_dssp THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHH-TTTCGGGCHH
T ss_pred HHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc--hHHHHHHHHHH-HhcChHHHHH
Confidence 99999999999999865 2 334444443 688999999999976643 57787665554 4555788999
Q ss_pred HHHHHHhcCCC---HHHHHHHHHHHHH--cCCchhhHHHHHHHHHHHHHhc
Q psy8681 334 LHERLLERTVH---VKVWMNYAQFEMS--SGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 334 l~eral~~~~~---~~vwi~ya~~e~~--~g~~~~~~~AR~vferAl~~~~ 379 (521)
+++.++...|. +.+....+..+.. .+. .+.+...|.+|+..+.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 241 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ---CDNKEDILNKALELCE 288 (315)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 99999988753 3333334443322 233 4556666777766544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=5e-14 Score=139.01 Aligned_cols=250 Identities=6% Similarity=-0.108 Sum_probs=198.1
Q ss_pred chhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC----------ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 92 RDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG----------FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g----------~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
.+.|+.+ ++++ ..+| +..+|.....+....+ .++.|...|++++...| .+..+|...+.....
T Consensus 45 ~~~al~~~~~~l--~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p---k~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 45 DESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRCWLLSR 119 (334)
T ss_dssp SHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC---CcHHHHHHhhHHHHH
Confidence 3678888 8999 9999 6889988777766543 36789999999999855 578889888877665
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHH-HHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIY-KAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~-~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
.+ .+++++|...+.+++...|... ..| ...+......|..+.+... |++
T Consensus 120 ~~--------------------~~~~~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~Al~~--------~~~ 169 (334)
T d1dcea1 120 LP--------------------EPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF--------TDS 169 (334)
T ss_dssp CS--------------------SCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHH--------HHT
T ss_pred hc--------------------cccHHHHHHHHHHHHhhCchhh--hhhhhHHHHHHHhccccHHHHHH--------HHH
Confidence 54 1158899999999999999875 343 3445666677888888766 999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
++..+|.++.+|..++.++...|+++.|...+.+++...|... +......++..+.+...|.+++...+... ..+..
T Consensus 170 ~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~--~~~~~ 247 (334)
T d1dcea1 170 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL--FRCEL 247 (334)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS--SSCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh--hHHHH
Confidence 9999999999999999999999999888888888877776543 33444556777888999999988554322 13333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.+......|++..|...|..++..+| +..+|+.++..+...|+ .++|...|++|+...|..
T Consensus 248 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCccc
Confidence 44455567899999999999999987 68899999999988887 999999999999999975
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.9e-12 Score=126.95 Aligned_cols=181 Identities=7% Similarity=0.011 Sum_probs=154.0
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.+.+++|..+ +++| ...| +...|...+..+...| ++++|...|++++...| .+..+|...+......|
T Consensus 56 ~e~~~~Al~~~~~ai--~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p---~~~~a~~~~~~~~~~l~---- 126 (315)
T d2h6fa1 56 DERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLR---- 126 (315)
T ss_dssp TCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----
T ss_pred CCchHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH---hhhhHHHHHhHHHHhhc----
Confidence 3456667777 7999 9999 7999999999998876 58999999999999965 57899999999888888
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
++++|...|.++++..|.+. .+|...+.+....|+.+.+... |+++|..+|.
T Consensus 127 ------------------~~~eAl~~~~kal~~dp~n~--~a~~~~~~~~~~~~~~~~Al~~--------~~~al~~~p~ 178 (315)
T d2h6fa1 127 ------------------DPSQELEFIADILNQDAKNY--HAWQHRQWVIQEFKLWDNELQY--------VDQLLKEDVR 178 (315)
T ss_dssp ------------------CCTTHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTT
T ss_pred ------------------cHHHHHHHHhhhhhhhhcch--HHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHCCc
Confidence 99999999999999999987 8999999999999999999877 9999999999
Q ss_pred CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCchh----H-HHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 246 NYDAWFDYLRLLEDEGN------ADLIRETYERAIANIPPTK----F-AELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~------~~~Ar~~~erAl~~~P~~~----~-a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
+..+|...+.++...+. ..+|...|.+|+...|.+. + +.+. .....+.+..++..++...+
T Consensus 179 n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 179 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCC
Confidence 99999999998877664 5789999999999999865 2 2332 33446788888988887433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.2e-12 Score=123.19 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHHhcC-CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH
Q psy8681 126 VSGARKVYERAVEFFG-EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT 204 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~-~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~ 204 (521)
.+.+..-++.++...+ .++....+|...+......| +++.|...|+++|...|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g----------------------~~~~A~~~~~~al~l~p~~~- 71 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG----------------------LRALARNDFSQALAIRPDMP- 71 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHhhccCCCCH-
Confidence 3455556666665432 11234667888888888887 99999999999999999987
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---
Q psy8681 205 AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281 (521)
Q Consensus 205 ~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--- 281 (521)
.+|..++......|+.+.|... |++++..+|.+..+|..++.++...|+.+.|...|++++...|.+.
T Consensus 72 -~a~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 142 (259)
T d1xnfa_ 72 -EVFNYLGIYLTQAGNFDAAYEA--------FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 142 (259)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHhhhchHHHHHHHHHHhhhh--------hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH
Confidence 7899999999999999999877 9999999999999999999999999999999999999999999766
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 282 --FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 --~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
.+......+....+..+.......++......+...+.......+.+..+...+...+...| ...+|..+|.++...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 222 (259)
T d1xnfa_ 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 222 (259)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHC
Confidence 22333445555555555555555443221111111111000112223444444444444444 367888899999999
Q ss_pred CCchhhHHHHHHHHHHHHHhccc
Q psy8681 359 GDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~~~ 381 (521)
|+ ++.|...|++|+...|.+
T Consensus 223 g~---~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 223 GD---LDSATALFKLAVANNVHN 242 (259)
T ss_dssp TC---HHHHHHHHHHHHTTCCTT
T ss_pred CC---HHHHHHHHHHHHHcCCCC
Confidence 98 999999999999998875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.5e-11 Score=115.53 Aligned_cols=227 Identities=15% Similarity=0.022 Sum_probs=165.6
Q ss_pred chhhHHH-HhhhccCCCC-----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 92 RDREEED-ERKDEGDRDS-----DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-----~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.+.|... ++++ ...+ ...+|...|.++.+.|+++.|...|++||...| .++.+|..++......|
T Consensus 15 ~e~al~~~~e~l--~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p---~~~~a~~~lg~~~~~~g---- 85 (259)
T d1xnfa_ 15 QEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAG---- 85 (259)
T ss_dssp HHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHH--HhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC---CCHHHHhhhchHHHHHH----
Confidence 4455555 5666 4433 267899999999999999999999999999965 47889999999998888
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|++++...|... ..|..++.+....|+...+... |++++..+|.
T Consensus 86 ------------------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~ 137 (259)
T d1xnfa_ 86 ------------------NFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDD--------LLAFYQDDPN 137 (259)
T ss_dssp ------------------CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTT
T ss_pred ------------------HHHHhhhhhhHHHHHHhhhh--hhHHHHHHHHHHHhhHHHHHHH--------HHHHHhhccc
Confidence 99999999999999999887 7888888888899999998877 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCC------HHHHHHHHHHHHcCCCCCCcHHHHHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGD------MERARAIYELAISQPRLDMPELVWKAY 318 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~------~e~Ar~ife~al~~~~~~~~~~lw~~y 318 (521)
+...+..++......+....+..+........+... +..+....|. ...+...+..++...+. ...+|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 215 (259)
T d1xnfa_ 138 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH--LSETNFYL 215 (259)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc--cHHHHHHH
Confidence 988777766666666655555555555544433322 2222222332 22222222222221111 23466667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMS 357 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~ 357 (521)
+.++...|+++.|...|++++..+|+.-++..++.++..
T Consensus 216 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~a~~~L~ 254 (259)
T d1xnfa_ 216 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELS 254 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788889999999999999999999876667677766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=9.2e-10 Score=106.24 Aligned_cols=260 Identities=12% Similarity=0.005 Sum_probs=192.3
Q ss_pred HhcccchhhHHH-HhhhccCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDSD------TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAKF 156 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P~------~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~~ 156 (521)
+..|+++.|..+ ++++ ...|+ ...+..++..+...|+++.|...|++++...+..... ...+...+..
T Consensus 23 ~~~g~~~~A~~~~~~aL--~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH--hhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 456777777777 8999 88883 3467788999999999999999999999875432222 2233334444
Q ss_pred HHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh------hHHHHHHHHHHHHHHcCChhhHHHHHHh
Q psy8681 157 EEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD------RTAEIYKAYTIHEKKYGDRAGIEDVIVS 230 (521)
Q Consensus 157 e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~------~~~~l~~~~~~~e~~~G~~~~a~~~i~~ 230 (521)
....+ ++..|...|..++...+.. ....++..++......|+.+.+...
T Consensus 101 ~~~~~----------------------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~--- 155 (366)
T d1hz4a_ 101 LFAQG----------------------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS--- 155 (366)
T ss_dssp HHHTT----------------------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH---
T ss_pred HHHHH----------------------HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH---
Confidence 44444 8888888888888653221 1224555666777788998888766
Q ss_pred hHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCHH
Q psy8681 231 KRKFQYEEEVNSNPN-----NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGDME 293 (521)
Q Consensus 231 krr~~ye~al~~~P~-----~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~e 293 (521)
|..++...+. ....+...+..+...+....+...+.++....+... .+.+....|+++
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T d1hz4a_ 156 -----ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 230 (366)
T ss_dssp -----HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHH
Confidence 8888877553 245666777778888999999999999887543321 456677899999
Q ss_pred HHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------C-CHHHHHHHHHHHHHcCCchhh
Q psy8681 294 RARAIYELAISQPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERT------V-HVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 294 ~Ar~ife~al~~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~------~-~~~vwi~ya~~e~~~g~~~~~ 364 (521)
.|...+..++...+.+. ....+...+..+...|+++.|..+|++++... | ...+|..++..+...|+ +
T Consensus 231 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~ 307 (366)
T d1hz4a_ 231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR---K 307 (366)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---H
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC---H
Confidence 99999999988543322 23455566777889999999999999998653 2 36688999999999998 9
Q ss_pred HHHHHHHHHHHHHhccc
Q psy8681 365 SLARRVFERANQALKAS 381 (521)
Q Consensus 365 ~~AR~vferAl~~~~~~ 381 (521)
+.|...|++|+...+..
T Consensus 308 ~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRT 324 (366)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999886654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=2.5e-12 Score=126.51 Aligned_cols=226 Identities=6% Similarity=-0.181 Sum_probs=180.8
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCccccHHHHH-HHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG--FVSGARKVYERAVEFFGEENLDEKLFI-AFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g--~~~~Ar~vye~Al~~~~~~~~~~~lw~-~~a~~e~~~~ 161 (521)
...|.++.|+.. ++++ ..+| +..+|...+......+ +++.|...+.+++...| .....|. ..+......+
T Consensus 84 ~~~~~~~~al~~~~~~l--~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~ 158 (334)
T d1dcea1 84 ESAALVKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAV 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHH--HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc---hhhhhhhhHHHHHHHhcc
Confidence 345678899999 9999 9999 8999999999888765 58899999999999955 3445543 3445555555
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
.++.|...|++++...|.+. ..|...+.+....|+.+.+... |.+++.
T Consensus 159 ----------------------~~~~Al~~~~~~i~~~p~~~--~a~~~l~~~~~~~~~~~~A~~~--------~~~~~~ 206 (334)
T d1dcea1 159 ----------------------APAEELAFTDSLITRNFSNY--SSWHYRSCLLPQLHPQPDSGPQ--------GRLPEN 206 (334)
T ss_dssp ----------------------CHHHHHHHHHTTTTTTCCCH--HHHHHHHHHHHHHSCCCCSSSC--------CSSCHH
T ss_pred ----------------------ccHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCHHHHHHH--------HHHhHH
Confidence 88999999999999999987 7888888888889988777654 666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWK 316 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~ 316 (521)
.+|.+...+..+ ...+..+.+...|.+++...|... .+......|+...|...|..++...|. ...+|.
T Consensus 207 ~~~~~~~~~~~~----~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~ 280 (334)
T d1dcea1 207 VLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW--CLLTII 280 (334)
T ss_dssp HHHHHHHHHHHH----HHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred hHHHHHHHHHHH----HHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch--HHHHHH
Confidence 666665555443 345667788999999999988765 566677789999999999999987653 357888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFE 355 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e 355 (521)
..+..+...|++++|...|+++++..| ....|..++...
T Consensus 281 ~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 281 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 888889999999999999999999998 567777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=6.3e-09 Score=100.16 Aligned_cols=272 Identities=11% Similarity=-0.019 Sum_probs=199.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
+......+.+....|++++|..+|++++...|..+.. ..++..++......| +++.
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g----------------------~~~~ 69 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG----------------------ELTR 69 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT----------------------CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC----------------------CHHH
Confidence 4566667888999999999999999999997753221 235555666666676 9999
Q ss_pred HHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC--------CCHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP--------NNYDAWFDYLR 255 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P--------~~~~~W~~y~~ 255 (521)
|...|++++...|.. .....+...+......|+...+... |.+++...+ ....++..++.
T Consensus 70 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~al~~~~~~~~~~~~~~~~~~~~la~ 141 (366)
T d1hz4a_ 70 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET--------QEKAFQLINEQHLEQLPMHEFLVRIRAQ 141 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHhcccchhhHHHHHHHHHHH
Confidence 999999999864432 1123444555666778888877765 777765422 12345667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCCHHHHHHHHHHHHcCC--CCCC---cHHHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGDMERARAIYELAISQP--RLDM---PELVWKAYID 320 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~~e~Ar~ife~al~~~--~~~~---~~~lw~~yi~ 320 (521)
.+...|+++.+...|..++...+... .+......|....+...+..+.... .... ...++...+.
T Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T d1hz4a_ 142 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 88999999999999999998766432 3455677899999999999887621 1111 1345666677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q psy8681 321 FEVGQGERDKVRELHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWK 395 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~ 395 (521)
++...|+++.|...+++++...+ ....+...+..+...|+ ++.|...|++++......+........+....
T Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 222 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 88899999999999999998753 24566778888888888 99999999999987665444344445555555
Q ss_pred HHHHHcCCHHHHHHHHhhC
Q psy8681 396 EFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 396 ~fE~~~G~~~~~~~v~~~~ 414 (521)
.+-...|+.+.+.....+.
T Consensus 299 ~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5666789999888877655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3e-08 Score=81.51 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
...-|..+...|++++|..+|.++|...| .++.+|..++......| +++.|...|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p---~~~~~~~~~a~~~~~~~----------------------~~~~A~~~~ 60 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKG----------------------DYQKAYEDG 60 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cchhhhhcccccccccc----------------------cccccchhh
Confidence 34567888889999999999999999865 47889999998888888 999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
.+++...|.+. ..|..++......|+.+.|... |++++..+|.++.+|..+.++..
T Consensus 61 ~~al~~~p~~~--~~~~~~g~~~~~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 61 CKTVDLKPDWG--KGYSRKAAALEFLNRFEEAKRT--------YEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred hhHHHhccchh--hHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999887 7888888888999999998877 99999999999999998887653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.7e-08 Score=83.06 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=76.3
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+..|++++|..+|.++|+..|.+. .+|..++......|+.+.|... |++++..+|.++.+|+.++..+..
T Consensus 14 ~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 14 LSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYED--------GCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchh--------hhhHHHhccchhhHHHHHHHHHHH
Confidence 344588888888888888888877 7888888888888888888766 888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|++++|...|++++...|.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~ 105 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNP 105 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH
T ss_pred ccCHHHHHHHHHHHHHhCCCCH
Confidence 8888888888888888888754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=8.2e-08 Score=91.76 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
.++|...+.++...|++++|...|.+|++... +.+.....|...+.+....+ +++
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~----------------------~~~ 94 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG----------------------NSV 94 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------CHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC----------------------CcH
Confidence 46788889999999999999999999998742 11223567777788877777 999
Q ss_pred HHHHHHHHHHhcCChhh----HHHHHHHHHHH-HHHcCChhhHHHHHHhhHHHHHHHHHhhCCC------CHHHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKDR----TAEIYKAYTIH-EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN------NYDAWFDYLR 255 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~-e~~~G~~~~a~~~i~~krr~~ye~al~~~P~------~~~~W~~y~~ 255 (521)
.|...|+++++..+... ...++...+.. +...|+.+.+... |++++...+. ...++..++.
T Consensus 95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~--------~~~A~~l~~~~~~~~~~~~~~~~la~ 166 (290)
T d1qqea_ 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC--------YELAGEWYAQDQSVALSNKCFIKCAD 166 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHH--------HHHHHHHHHhcCchhhhhhHHHHHHH
Confidence 99999999998754431 12344444443 3456888888766 8888765332 2345677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
++...|++++|...|++++...|..
T Consensus 167 ~~~~~g~y~~A~~~~~~~~~~~~~~ 191 (290)
T d1qqea_ 167 LKALDGQYIEASDIYSKLIKSSMGN 191 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHcChHHHHHHHHHHHHHhCccc
Confidence 7777777777777777777765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1e-07 Score=82.47 Aligned_cols=110 Identities=15% Similarity=-0.034 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
....|..+.+.|+++.|..+|.+++...| .+..+|..++......| +++.|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~----------------------~~~~A~~~~ 67 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTE----------------------CYGYALGDA 67 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch---hhhhhhhhhHHHHHhcc----------------------ccchHHHHH
Confidence 34455566677777777777777777744 35667777777776666 777777777
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
+++|+..|.+. ..|..++......|+.+.+... |++++..+|++..++..+....
T Consensus 68 ~kal~~~p~~~--~a~~~~g~~~~~~g~~~eA~~~--------~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 68 TRAIELDKKYI--KGYYRRAASNMALGKFRAALRD--------YETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcccch--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCHHHHHHHHHHH
Confidence 77777777765 5666677777777777777655 7777777777777766665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=9.6e-08 Score=85.67 Aligned_cols=148 Identities=7% Similarity=-0.023 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.+|.. |......|+++.|...|.++. +.++.+|..++......| +++.|..
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g----------------------~~~~A~~ 57 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILK----------------------NMTEAEK 57 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTT----------------------CHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcC----------------------CchhHHH
Confidence 44543 555666666666666665421 124556666666666665 6666666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC----------------HHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN----------------YDAWFDYL 254 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~----------------~~~W~~y~ 254 (521)
.|++||+.+|... ..|...+....+.|+.+.|... |++++...|.+ ..+|+.++
T Consensus 58 ~~~kAl~ldp~~~--~a~~~~g~~~~~~g~~~~A~~~--------~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a 127 (192)
T d1hh8a_ 58 AFTRSINRDKHLA--VAYFQRGMLYYQTEKYDLAIKD--------LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127 (192)
T ss_dssp HHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred HHHHHHHHhhhhh--hhHHHHHHHHHhhccHHHHHHH--------HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHH
Confidence 6666666666655 5666666666666666666544 66666554332 46788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 255 RLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 255 ~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~ 304 (521)
.++...|++++|...|.+|+...|... .+.++.|...+.+...
T Consensus 128 ~~~~~~~~~~~A~~~l~~A~~~~~~~~-------~~~~~~Al~~~~~~~~ 170 (192)
T d1hh8a_ 128 FMYAKKEEWKKAEEQLALATSMKSEPR-------HSKIDKAMECVWKQKL 170 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSGG-------GGHHHHHHHHHHTTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHhhhh
Confidence 999999999999999999998877532 3344555555554433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.6e-07 Score=84.19 Aligned_cols=136 Identities=12% Similarity=0.055 Sum_probs=111.2
Q ss_pred hhhH-HHHHH-HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q psy8681 56 LEKA-KAWKK-AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVY 133 (521)
Q Consensus 56 lP~~-~~W~~-~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vy 133 (521)
|+.. ++|.+ ......|+++.|...|. +.. .|++.+|..+|..+...|+++.|...|
T Consensus 2 ~~~~~~l~~~g~~~~~~~d~~~Al~~~~------------------~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~ 59 (192)
T d1hh8a_ 2 LVEAISLWNEGVLAADKKDWKGALDAFS------------------AVQ----DPHSRICFNIGCMYTILKNMTEAEKAF 59 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH------------------TSS----SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHH------------------hcC----CCCHHHHHHHHHHHHHcCCchhHHHHH
Confidence 4566 88888 66677788888777775 322 347889999999999999999999999
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----------
Q psy8681 134 ERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR---------- 203 (521)
Q Consensus 134 e~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~---------- 203 (521)
++||++.| ..+.+|...+.....+| +++.|...|++|+...|.+.
T Consensus 60 ~kAl~ldp---~~~~a~~~~g~~~~~~g----------------------~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~ 114 (192)
T d1hh8a_ 60 TRSINRDK---HLAVAYFQRGMLYYQTE----------------------KYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114 (192)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred HHHHHHhh---hhhhhHHHHHHHHHhhc----------------------cHHHHHHHHHHHHHhCccCchHHHHHhhhh
Confidence 99999955 57889999999998888 99999999999998755431
Q ss_pred ----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 204 ----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 204 ----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
...++..++......|+.+.+... |++++...|..
T Consensus 115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~--------l~~A~~~~~~~ 153 (192)
T d1hh8a_ 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQ--------LALATSMKSEP 153 (192)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCCSG
T ss_pred cccchHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCCc
Confidence 235666778888889999998876 99999998874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.5e-07 Score=81.40 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
|+++.|...|+++++..|.+. .+|..++......|+.+.|... |+++|..+|.+..+|..++..+...|+
T Consensus 24 ~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 24 KDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGD--------ATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHH--------HHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 377777777777777777765 6777777777777777777766 777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCchh
Q psy8681 263 ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~ 281 (521)
+++|...|++++...|.+.
T Consensus 94 ~~eA~~~~~~a~~~~p~~~ 112 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDK 112 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 7777777777777776544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1e-07 Score=91.02 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP------NNYDAWFDYLRLL 257 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P------~~~~~W~~y~~~~ 257 (521)
.++.|..+|.++ +.+.+..|+.+.|... |++++...+ ....+|...+.++
T Consensus 32 ~~~~Aa~~y~~a----------------a~~y~~~~~~~~A~~~--------y~kA~~~~~~~~~~~~~a~~~~~~g~~y 87 (290)
T d1qqea_ 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDS--------FLKAADYQKKAGNEDEAGNTYVEAYKCF 87 (290)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHCcCHHHHHHH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566666666554 4556678888888876 999988632 2346899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----------HHHHH-HHcCCHHHHHHHHHHHHcCC---CC-CCcHHHHHHHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----------FAELE-SLLGDMERARAIYELAISQP---RL-DMPELVWKAYIDF 321 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le-~~~g~~e~Ar~ife~al~~~---~~-~~~~~lw~~yi~~ 321 (521)
.+.|++++|...|++++...+... .+.+. ...|+++.|...|++++... .. .....++...+.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~ 167 (290)
T d1qqea_ 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 999999999999999998755432 34433 45799999999999998631 11 1124567778889
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 322 EVGQGERDKVRELHERLLERTVH--------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~~--------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+...|++++|..+|++++...+. ..++...+......++ +..|...|+++++..|...
T Consensus 168 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d---~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC-----
T ss_pred HHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999987632 2455666666677787 9999999999998877543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=1e-07 Score=85.11 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=78.4
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+..|+++.|...|.+||...|.+. .+|..++....+.|+.+.|... |+++|..+|+++.+|..++.++..
T Consensus 15 ~~~g~~~~Ai~~~~kal~~~p~~~--~~~~~lg~~y~~~~~~~~Ai~~--------~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 15 FVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALAD--------CRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHhhhhhhhhhhHH--------HHHHHHhCCCcHHHHHHHHHHHHH
Confidence 344599999999999999999876 7888888888899999888877 999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCc
Q psy8681 260 EGNADLIRETYERAIANIPP 279 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~ 279 (521)
.|++++|...|++|+...|.
T Consensus 85 l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999887664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=6.2e-08 Score=86.53 Aligned_cols=108 Identities=9% Similarity=-0.126 Sum_probs=90.1
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
|++......|..+...|+++.|...|.+||...| .++.+|..++......| +++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p---~~~~~~~~lg~~y~~~~----------------------~~~~ 56 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQ----------------------QPEQ 56 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHhhhh----------------------hhhh
Confidence 6677777888999999999999999999999855 46888998888888888 8999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
|...|++||+..|... ..|..++......|+.+.|... |++++..+|.+...|
T Consensus 57 Ai~~~~~al~l~p~~~--~a~~~lg~~~~~l~~~~~A~~~--------~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 57 ALADCRRALELDGQSV--KAHFFLGQCQLEMESYDEAIAN--------LQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHHHHTTSCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCcccHHHH
Confidence 9999999999999876 6788888888889998888876 888888877544333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=2.4e-07 Score=75.20 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
|+++.|...|++++...|.+. .+|..++......|+.+.|... |++++..+|.+..+|..++..+...|+
T Consensus 30 g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 30 ANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIA--------LNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp TCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhcccccccc--hhhhhhhhhhhhhhhHHHhhcc--------cccccccccccccchHHHHHHHHHCCC
Confidence 389999999999999999876 7888888888888998888877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8681 263 ADLIRETYERAI 274 (521)
Q Consensus 263 ~~~Ar~~~erAl 274 (521)
.++|.+.|++.|
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.3e-08 Score=103.57 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=47.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
|..++..+|.+...|..++..+...|+.+.|...+.+++...|... .+.+....|+++.|+..|.+|+...|. ..
T Consensus 109 l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~--~~ 186 (497)
T d1ya0a1 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS--NG 186 (497)
T ss_dssp HTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--BS
T ss_pred HHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--ch
Confidence 4444445555555566666555555555555555555555444322 344455556666666666666654332 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEM 356 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~ 356 (521)
..|...+.++...|+...|...|.++|... |++.++.+++....
T Consensus 187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 455555555555666666666666666544 45555555554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=7.7e-07 Score=73.42 Aligned_cols=113 Identities=9% Similarity=-0.053 Sum_probs=89.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 115 RELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 115 ~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.+++.....+++++|.+.|++++...| .++.++++||.+....+ ..+++.+|+.+|++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p---~~~~~~~n~a~~L~~s~-------------------~~~d~~~Ai~~l~~ 61 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTR-------------------YNDDIRKGIVLLEE 61 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSS-------------------SHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhc-------------------chHHHHHHHHHHHH
Confidence 345566667799999999999999855 57889999998875422 01277889999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
++...|.......|..++....+.|+.+.|... |+++|..+|.+..+......+.
T Consensus 62 ~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~--------~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 62 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY--------VRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhccCCchHHHHHHHHHHHHHHHhhhHHHHHH--------HHHHHHhCcCCHHHHHHHHHHH
Confidence 999888765446788888888899999999877 9999999999988876555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.1e-06 Score=74.93 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
...+...|..+...|+++.|+..|.+||..+|.
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~ 45 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEY 45 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 355667888899999999999999999998764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.49 E-value=1.7e-06 Score=75.31 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
+..+...|..+.+.|++..|...|.+|+..++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~ 47 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM 47 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455777888899999999999999999998653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.5e-06 Score=74.48 Aligned_cols=117 Identities=13% Similarity=0.022 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE 327 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~ 327 (521)
..+...|..+...|+++.|+..|++|+..+|...- -.......+-. + ...++...+..+...|+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~-------~~~~~~~~~~~--~-------~~~~~~nla~~y~k~~~ 77 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------FSNEEAQKAQA--L-------RLASHLNLAMCHLKLQA 77 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------CCSHHHHHHHH--H-------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc-------cchHHHhhhch--h-------HHHHHHHHHHHHHhhhh
Confidence 44566778888889999999999999988775320 00000000000 0 01233334444556666
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 328 RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
++.|...++++|...| ++.+|...|..+...|+ ++.|...|++|+...|+++.
T Consensus 78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSCHH
T ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHhhh---HHHHHHHHHHHHHhCCCCHH
Confidence 6666666666666665 56666666666666666 66666666666666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=8.2e-07 Score=71.95 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCC
Q psy8681 212 TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGD 291 (521)
Q Consensus 212 ~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~ 291 (521)
+....+.|+...|... |++++..+|.++.+|..++.++...|++++|...|++|+...|..
T Consensus 23 g~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------- 83 (112)
T d1hxia_ 23 GLSMLKLANLAEAALA--------FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----------- 83 (112)
T ss_dssp HHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHhhhHHHHHH--------HhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-----------
Confidence 3444466777777766 888888888888888888888888888888888888888777753
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
..+|...+..+...|++++|.+.|++.|
T Consensus 84 --------------------~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 --------------------IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3455555555666666666666666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.40 E-value=4.8e-06 Score=71.26 Aligned_cols=129 Identities=14% Similarity=0.034 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL--DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
...|..-|.-+.+.|++..|...|.+|+..++.... ....+.....+....- ..++..++..++++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~Nla~~~~~l~~~~~ 85 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN-----------LNLATCYNKNKDYPK 85 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHH-----------hhHHHHHHHhcccch
Confidence 345777788888999999999999999998653221 1111111111110000 001222334459999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
|...|+++|...|.+. ..|...+......|+.+.|... |++++..+|.+..++..+..+..+
T Consensus 86 Al~~~~~al~~~p~~~--ka~~~~g~~~~~lg~~~~A~~~--------~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 86 AIDHASKVLKIDKNNV--KALYKLGVANMYFGFLEEAKEN--------LYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhh--hhhHHhHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 7888899999999999999877 999999999999999888766543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=9.4e-07 Score=72.89 Aligned_cols=89 Identities=8% Similarity=-0.091 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChh---hHHHHHHhhHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA---GIEDVIVSKRKFQYEEEVNSNPNN--YDAWFDYLRLL 257 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~---~a~~~i~~krr~~ye~al~~~P~~--~~~W~~y~~~~ 257 (521)
+++++|...|+++|...|.+. .++..|+.+..+.++.. .+..+ |++++..+|.+ .++|+.++..+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~--~~~~n~a~~L~~s~~~~d~~~Ai~~--------l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVL--------LEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHH--------HHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcchHHHHHHHHH--------HHHHHhccCCchHHHHHHHHHHHH
Confidence 388889999999998888876 67777877765544433 34443 88888877654 45888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.+.|++++|+..|++++...|.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCH
Confidence 888888888888888888888754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.33 E-value=1.4e-06 Score=74.10 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHH--HHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV--IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~--i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
.+++|+..|+++++..|.+. .++..++......+....+... ...++...|+++|..+|.++.+|..++..+...|
T Consensus 12 ~fe~A~~~~e~al~~~P~~~--~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCcch--HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 89999999999999999987 6777776555443333221111 1123345699999999999999999999987655
Q ss_pred C-----------HHHHHHHHHHHHHcCCc
Q psy8681 262 N-----------ADLIRETYERAIANIPP 279 (521)
Q Consensus 262 ~-----------~~~Ar~~~erAl~~~P~ 279 (521)
. +..|...|++|+...|.
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 3 34455555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=3e-06 Score=72.59 Aligned_cols=95 Identities=20% Similarity=0.089 Sum_probs=71.1
Q ss_pred hhhhhhHHHHHHHHHHHHhcCChhh--------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC
Q psy8681 179 KFQYEEHERARVIYKYALDHIPKDR--------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~P~~~--------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P 244 (521)
++..|++..|...|..||..+|... ...+|...+....+.|+...+... |+++|..+|
T Consensus 27 ~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~--------~~~al~~~p 98 (153)
T d2fbna1 27 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH--------ASKVLKIDK 98 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhh--------hhccccccc
Confidence 3445599999999999998876432 123455555666677777777765 888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.++.+|+..+..+...|+++.|+..|++++...|.+.
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 135 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 8888888888888888888888888888888887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00017 Score=66.54 Aligned_cols=229 Identities=10% Similarity=-0.011 Sum_probs=145.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|+.+|.+....+++.+|.+.|++|.+. .+...+..++.+...-. .+ ..++..|
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~~y~~G~-~~-----------------~~d~~~a 57 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQ-GV-----------------EKNLKKA 57 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTS-SS-----------------CCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCC-Cc-----------------chhHHHH
Confidence 4678999999999999999999999999875 24566777777664311 00 0177888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----c
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED----E 260 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~----~ 260 (521)
...|..+....... .+..++.+... .++...+... |++++...+. .....++..+.. .
T Consensus 58 ~~~~~~a~~~~~~~----a~~~l~~~~~~~~~~~~~~~~a~~~--------~~~a~~~g~~--~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 58 ASFYAKACDLNYSN----GCHLLGNLYYSGQGVSQNTNKALQY--------YSKACDLKYA--EGCASLGGIYHDGKVVT 123 (265)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHH--------HHHHHHTTCH--HHHHHHHHHHHHCSSSC
T ss_pred HHhhcccccccccc----hhhccccccccccccchhhHHHHHH--------Hhhhhhhhhh--hHHHhhcccccCCCccc
Confidence 88888887764332 22333333222 1233334333 7777765443 333334444332 2
Q ss_pred CCHHHHHHHHHHHHHcCCchh---HHHHHH----HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChH
Q psy8681 261 GNADLIRETYERAIANIPPTK---FAELES----LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERD 329 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~---~a~le~----~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~ 329 (521)
.....+...+.++........ ++.+.. ...+...+...+..+..... ...+..++.++.. ..+++
T Consensus 124 ~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~----~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccc----cccccchhhhcccCcccccchh
Confidence 356677777777766544333 333333 24677888888888887542 2344445544443 46899
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHhc
Q psy8681 330 KVRELHERLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 330 ~Ar~l~eral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~~~ 379 (521)
.|...|.++... .++..+..++.+... .|.+.+...|..+|++|...-.
T Consensus 200 ~A~~~~~~aa~~-g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACEL-ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcc-cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999999876 467788888887764 3333458899999999987644
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.29 E-value=9e-06 Score=70.56 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE 327 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~ 327 (521)
......|..+...|++..|...|.+|+...|... ........ .... ....++...+..+...|+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~-------~~~~~~~~-~~~~--------~~~~~~~Nla~~~~~l~~ 79 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY-------GLSEKESK-ASES--------FLLAAFLNLAMCYLKLRE 79 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-------SCCHHHHH-HHHH--------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-------ccchhhhh-hcch--------hHHHHHHhHHHHHHHhhh
Confidence 4456677888888999999999999887654322 00000000 0000 001233333444555666
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 328 RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+++|...|++++...| ++.+|...+..+...|+ ++.|...|++|+...|++.
T Consensus 80 ~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~---~~~A~~~~~~al~l~P~n~ 132 (168)
T d1kt1a1 80 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQNK 132 (168)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTTCH
T ss_pred cccchhhhhhhhhcccchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH
Confidence 6666666666666655 56666666666666666 6666666666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.6e-05 Score=65.65 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHH
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAEL 285 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~l 285 (521)
+...+......|+++.|... |.++|..+|.++.+|..++..+...|+++.|...|++|+...|... +..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~--------y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~- 77 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKH--------YDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ- 77 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH-
Confidence 44455555677888888776 8999999999999999999999888888888888888888766432 000
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHH
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKV 347 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~v 347 (521)
-..++...+..+...++++.|...|++++..++++.+
T Consensus 78 -------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 114 (128)
T d1elra_ 78 -------------------------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (128)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred -------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence 0234445555666677777777777777776666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=8.3e-06 Score=70.76 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.+|..++....+.|+.+.|... |.++|..+|.++.+|+..+..+...|+++.|...|++|+...|.+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~--------~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~ 145 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDS--------CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 145 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhhcccchhhhh--------hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 4555556666667777777765 7788888888888888888888888888888888888888777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.1e-06 Score=88.41 Aligned_cols=203 Identities=7% Similarity=-0.028 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH---
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT--- 204 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~--- 204 (521)
+|.+.|.+|+.+.|+ ....|..++......+ ++.+ .|+++|..+|....
T Consensus 4 eA~q~~~qA~~l~p~---~a~a~~~la~~~~~~~----------------------~l~e---aye~~i~~dp~~a~~~~ 55 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD---MTDSKLGPAEVWTSRQ----------------------ALQD---LYQKMLVTDLEYALDKK 55 (497)
T ss_dssp HHHHHHHHHHHHHGG---GTCSSSCSSSSHHHHH----------------------HHHH---HHHHHHHHCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCC---CHHHHhhHHHHHHHHc----------------------hHHH---HHHHHHHcChhhHHHHh
Confidence 578999999998653 3344555555555444 5554 48999888875431
Q ss_pred --HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 205 --AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--PNNYDAWFDYLRL-LEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 205 --~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--P~~~~~W~~y~~~-~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
..+|... ...+. ..|+..+... |........+... ....+.+..+...|.+++...|+
T Consensus 56 ~e~~Lw~~~---------y~~~i--------e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~ 118 (497)
T d1ya0a1 56 VEQDLWNHA---------FKNQI--------TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118 (497)
T ss_dssp HHHHHHHHH---------THHHH--------HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHH---------HHHHH--------HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh
Confidence 1233210 01111 1255555432 3333333333222 23344566666666666666665
Q ss_pred hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHH
Q psy8681 280 TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQ 353 (521)
Q Consensus 280 ~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~ 353 (521)
.. ++......|+.+.|...|..++...+ ...+...+++....|+++.|+..|.+++...| ++..|..+|.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 43 45566778899999998888887432 35777788999999999999999999999998 6899999999
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 354 FEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 354 ~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.....|+ ...|...|.||+...|..+
T Consensus 195 ~~~~~~~---~~~A~~~y~ral~~~~~~~ 220 (497)
T d1ya0a1 195 LASSKGD---HLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHTTC---HHHHHHHHHHHHSSSBCCH
T ss_pred HHHHcCC---HHHHHHHHHHHHhCCCCCH
Confidence 9999998 9999999999998766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=1.7e-05 Score=68.68 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=87.6
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..+++..|...|.+||...+... .... ....+..+|....+|..++..+.+.
T Consensus 39 ~~~~y~~Ai~~y~~al~~~~~~~-------------~~~~---------------~~~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 39 KSQNWEMAIKKYTKVLRYVEGSR-------------AAAE---------------DADGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHH-------------HHSC---------------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhhhhhh-------------hhhh---------------hHHHHHhChhhHHHHHHHHHHHHhh
Confidence 33589999999999987643321 0000 2333445677788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 261 GNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
|++++|...|++|++..|.+. .+..+..+|+++.|...|++++...|.+ ..+...+..+.....
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n--~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Confidence 999999999999999999876 5677889999999999999999976653 456666555544433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.18 E-value=4.8e-06 Score=70.63 Aligned_cols=119 Identities=11% Similarity=0.004 Sum_probs=80.5
Q ss_pred HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP 200 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P 200 (521)
.+.+.+++|+..|++|+...| .++.+|..++......+ .+... ....+.+++|...|++|++..|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P---~~~~~~~~~g~~l~~~~-~~~~~-----------~e~~~~~~~Ai~~~~kAl~l~P 72 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNP---LDADNLTRWGGVLLELS-QFHSI-----------SDAKQMIQEAITKFEEALLIDP 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHH-HHSCH-----------HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccHHHHHHHHHHHHhhCC---cchHHHHHHHHHHHHhh-hhhhh-----------hHHHHHHHHHHHHHHHHHHhcc
Confidence 455678899999999999965 57788888887665443 11110 0011368899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCC----hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 201 KDRTAEIYKAYTIHEKKYGD----RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 201 ~~~~~~l~~~~~~~e~~~G~----~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
.+. ..|..++......|. ...+... ..+....|++++..+|++...+..+....
T Consensus 73 ~~~--~a~~~lG~~y~~~g~~~~~~~~~~~~-~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 73 KKD--EAVWCIGNAYTSFAFLTPDETEAKHN-FDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp TCH--HHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhh--HHHhhHHHHHHHcccchhhHHHHHHh-HHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 987 667666666554442 2111111 12334559999999999998887776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=4.7e-06 Score=68.98 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=70.3
Q ss_pred hhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q psy8681 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL- 257 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~- 257 (521)
++..++++.|...|.++|+..|.+. .+|..++....+.|+.+.+... |+++|..+|.+...|..++..+
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCREL--------CEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHH--------HHHHHHhCcccHHHHHHHHHHHH
Confidence 3444599999999999999999887 7899899999999999999877 9999999998877666655544
Q ss_pred ------HHcCCHHHHHHHHHHHHHcCC
Q psy8681 258 ------EDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 258 ------~~~g~~~~Ar~~~erAl~~~P 278 (521)
...+++++|...|++++...|
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 445566666666666665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=1.6e-05 Score=74.43 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=64.5
Q ss_pred HcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK 201 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~ 201 (521)
..|++++|...|+++|+..| .+..++..++.+....| ++++|...|+.+++..|.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P---~d~~ar~~La~lL~~~G----------------------~~e~A~~~l~~a~~l~P~ 62 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASP---KDASLRSSFIELLCIDG----------------------DFERADEQLMQSIKLFPE 62 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCT---TCHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHCGG
T ss_pred HCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHhCCC
Confidence 34555666666666665533 34555555555555555 556666666666655555
Q ss_pred hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 202 DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE-VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 202 ~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a-l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.. ..+..|..+....+....+... +... +...|.....++..+..+...|+.++|...++++....|..
T Consensus 63 ~~--~~~~~l~~ll~a~~~~~~a~~~--------~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 63 YL--PGASQLRHLVKAAQARKDFAQG--------AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp GH--HHHHHHHHHHHHHHHHHHHTTS--------CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred cH--HHHHHHHHHHHhccccHHHHHH--------hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 44 3444444333222111111000 0000 01133344455555666777788888888888888877754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=7.7e-05 Score=57.89 Aligned_cols=84 Identities=11% Similarity=-0.014 Sum_probs=68.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc----ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN----LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~----~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
+++-+..+|....+.|++..|+..|++|+...|... ....++..++......| +
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g----------------------~ 61 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG----------------------D 61 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT----------------------C
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC----------------------C
Confidence 566788999999999999999999999999865322 23677888888888887 9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
+++|+..|+++|+..|.+. .++..+..+++
T Consensus 62 ~~~A~~~y~~aL~l~P~~~--~a~~Nl~~~~~ 91 (95)
T d1tjca_ 62 LDKALLLTKKLLELDPEHQ--RANGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCCH--HHHHHHHHHHH
Confidence 9999999999999999987 56666554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.73 E-value=1.9e-05 Score=73.88 Aligned_cols=128 Identities=5% Similarity=-0.155 Sum_probs=92.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
++.|+++.|+.. +++| ..+| +...+..++.+++..|++++|...|+++++..| .....+..++.+....+
T Consensus 7 L~~G~l~eAl~~l~~al--~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P---~~~~~~~~l~~ll~a~~--- 78 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP---EYLPGASQLRHLVKAAQ--- 78 (264)
T ss_dssp TTTTCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHH---
T ss_pred HHCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhcc---
Confidence 457899999999 9999 9999 899999999999999999999999999999965 46778888877665444
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH-IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~-~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
..+.+...+...... .|... ..+...+......|+.+.+... +++++...
T Consensus 79 -------------------~~~~a~~~~~~~~~~~~p~~~--~~~l~~a~~~~~~gd~~~A~~~--------~~~a~e~~ 129 (264)
T d1zbpa1 79 -------------------ARKDFAQGAATAKVLGENEEL--TKSLVSFNLSMVSQDYEQVSEL--------ALQIEELR 129 (264)
T ss_dssp -------------------HHHHHTTSCCCEECCCSCHHH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHC
T ss_pred -------------------ccHHHHHHhhhhhcccCchHH--HHHHHHHHHHHhCCCHHHHHHH--------HHHHHhcC
Confidence 333322222221111 23222 3333445555677888888876 88888888
Q ss_pred CCCHHHHH
Q psy8681 244 PNNYDAWF 251 (521)
Q Consensus 244 P~~~~~W~ 251 (521)
|..+..|.
T Consensus 130 p~~~~~~~ 137 (264)
T d1zbpa1 130 QEKGFLAN 137 (264)
T ss_dssp CCCCEEET
T ss_pred CCCCcccc
Confidence 87765553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.72 E-value=0.006 Score=55.49 Aligned_cols=214 Identities=12% Similarity=0.011 Sum_probs=135.6
Q ss_pred cccchhhHHH-HhhhccCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 89 DKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.+++++|... +++. .. .++..+..++.++.. ..++..|...|..+.... .+..+..++.+.....
T Consensus 15 ~~d~~~A~~~~~kAa--~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~~a~~~l~~~~~~~~-- 84 (265)
T d1ouva_ 15 EKDFTQAKKYFEKAC--DL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQ-- 84 (265)
T ss_dssp TTCHHHHHHHHHHHH--HT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTS--
T ss_pred CCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----ccchhhcccccccccc--
Confidence 4566666666 7887 42 367889999999887 458899999999998762 3455555555443211
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
......+.|...|+.+....+......+...+............+. ..+.. ...
T Consensus 85 ----------------~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~--------~~~~~--~~~ 138 (265)
T d1ouva_ 85 ----------------GVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAV--------EYFTK--ACD 138 (265)
T ss_dssp ----------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH--------HHHHH--HHH
T ss_pred ----------------ccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHH--------HHhhh--hhc
Confidence 0012678889999999887665431122112211000111111111 11332 234
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC-Cchh--HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 244 PNNYDAWFDYLRLLED----EGNADLIRETYERAIANI-PPTK--FAELESL----LGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~-P~~~--~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
+.+...|..++..+.. ..+...+...++.+.... |... ++.++.. ..+++.|...|.++..... +
T Consensus 139 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~----~ 214 (265)
T d1ouva_ 139 LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----G 214 (265)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----H
T ss_pred ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC----H
Confidence 6788899999999886 346778888899988753 2222 4555544 4689999999999998642 3
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q psy8681 313 LVWKAYIDFEVG----QGERDKVRELHERLLERT 342 (521)
Q Consensus 313 ~lw~~yi~~e~~----~g~~~~Ar~l~eral~~~ 342 (521)
..+..++.++.. ..++.+|...|+++....
T Consensus 215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 455555655544 337899999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00031 Score=61.26 Aligned_cols=116 Identities=15% Similarity=0.022 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCC-HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGD-MERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~-~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
+..+...+......|++++|...|.+|+...|...+..+. .+. ....+.-+.. ....+|...+..+...
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~--~~~w~~~~r~~l~~--------~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR--DFQFVEPFATALVE--------DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT--TSTTHHHHHHHHHH--------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc--chHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC
Confidence 3456677778888999999999999999987654311000 000 0000000000 0123444555555555
Q ss_pred CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 326 GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
|+++.|...+++++...| +..+|..++..+...|+ ...|..+|+++.
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr---~~eAl~~y~~~~ 128 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVK 128 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 666666666666665555 45555555555555555 555555555553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00021 Score=62.45 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..+...+.-....|+++.|...|.+|+.+.+.++.. +.....|. ...+..
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~---~~~~~~w~---------------------------~~~r~~ 61 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD---DLRDFQFV---------------------------EPFATA 61 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG---GGTTSTTH---------------------------HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc---cCcchHHH---------------------------HHHHHH
Confidence 456667777788899999999999999986533211 00000000 000000
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+ . +. ...++..++......|+.+.+... +++++..+|.+..+|..++..+...|+..+|...|
T Consensus 62 l-~------~~--~~~a~~~la~~~~~~g~~~~Al~~--------~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y 124 (179)
T d2ff4a2 62 L-V------ED--KVLAHTAKAEAEIACGRASAVIAE--------LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAY 124 (179)
T ss_dssp H-H------HH--HHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred H-H------HH--HHHHHHHHHHHHHHCCCchHHHHH--------HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0 0 01 115667777778889999999877 99999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8681 271 ERAIA 275 (521)
Q Consensus 271 erAl~ 275 (521)
+++..
T Consensus 125 ~~~~~ 129 (179)
T d2ff4a2 125 RRVKT 129 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=0.00024 Score=60.23 Aligned_cols=114 Identities=15% Similarity=0.021 Sum_probs=77.6
Q ss_pred hhHHHH--HHHHHHcCChhHHHHHHHHHHHhcCCccc---------cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhh
Q psy8681 111 TYGMRE--LVFEEQNGFVSGARKVYERAVEFFGEENL---------DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179 (521)
Q Consensus 111 ~~W~~~--a~~e~~~g~~~~Ar~vye~Al~~~~~~~~---------~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~ 179 (521)
..+..+ +......|++++|...|++||.+.+..+. ...+|.+++......|
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg------------------ 69 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------ 69 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC------------------
Confidence 344444 55667789999999999999998764332 1345566666666666
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+++.|...|+.+|...|... . ...... |....+++.++..+..
T Consensus 70 ----~~~~A~~~~~~al~~~~~~~--~------------~~~~~~-------------------~~~~~a~~~~g~~~~~ 112 (156)
T d2hr2a1 70 ----SFDEALHSADKALHYFNRRG--E------------LNQDEG-------------------KLWISAVYSRALALDG 112 (156)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHC--C------------TTSTHH-------------------HHHHHHHHHHHHHHHH
T ss_pred ----ccchhhHhhhhhhhcccccc--c------------cccccc-------------------chhHHHHhhhHHHHHH
Confidence 88999988888887644321 0 000000 1113467788889999
Q ss_pred cCCHHHHHHHHHHHHHcCCc
Q psy8681 260 EGNADLIRETYERAIANIPP 279 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~ 279 (521)
.|++++|...|++|+...|.
T Consensus 113 lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 113 LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999887554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00035 Score=53.97 Aligned_cols=88 Identities=19% Similarity=0.083 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
+.+-++.+|..+.+.|++.+|...|++|+...|... .+......++...+..+.+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~------------------------~~~~~~~~~l~~Lg~~~~~~ 59 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE------------------------ISTIDKVSVLDYLSYAVYQQ 59 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------------------CCSSCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh------------------------ccCccHHHHHHHHhhHHHhc
Confidence 345667777777788888888888877776544311 00111245666677778888
Q ss_pred CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q psy8681 326 GERDKVRELHERLLERTV-HVKVWMNYAQFEMS 357 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~ 357 (521)
|++++|+..|+++|+..| ++.++.+++.++..
T Consensus 60 g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 60 GDLDKALLLTKKLLELDPEHQRANGNLKYFEYI 92 (95)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999999999999999887 67788777766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.37 E-value=0.00039 Score=58.88 Aligned_cols=99 Identities=7% Similarity=-0.080 Sum_probs=66.2
Q ss_pred HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 214 HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY------------DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 214 ~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~------------~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.....|+.+.|... |+++|.++|..+ .+|..++..+...|+++.|...|++++...|..
T Consensus 18 ~~~~~g~y~~Ai~~--------y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~- 88 (156)
T d2hr2a1 18 RQLVAGEYDEAAAN--------CRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR- 88 (156)
T ss_dssp HHHHHTCHHHHHHH--------HHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHH--------HHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc-
Confidence 33456888888877 999999887643 567788888888888888888888887754321
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRLD--MPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
....+.. ....++...+..+...|++++|...|++++++.
T Consensus 89 ---------------------~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 89 ---------------------GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp ---------------------CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1100000 001234445666677778888888888877763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.025 Score=45.20 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.|+..+.-.|. ..+.|.|+-.+..+. ++.++..+|+.++...|... ++-.+.++|++++|+..++.+++.
T Consensus 24 q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 24 QVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35555433333 789999999998775 45678888888888777543 244455667777777777777775
Q ss_pred CCCC
Q psy8681 306 PRLD 309 (521)
Q Consensus 306 ~~~~ 309 (521)
.|.+
T Consensus 103 eP~n 106 (124)
T d2pqrb1 103 ERNN 106 (124)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 5443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=0.3 Score=38.63 Aligned_cols=90 Identities=8% Similarity=-0.107 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~-~~~W~~y~~~~~~~g~ 262 (521)
++..-+.-|..-+.-.|. ......|+-...+..+...+... ...++.++..+|.+ .+.|+.++..+.+.|+
T Consensus 17 el~~~~~q~~~e~~~~~s---~qt~F~YAw~Lv~S~~~~d~~~g-----I~lLe~~~~~~p~~~rd~lY~Lav~yyklgd 88 (124)
T d2pqrb1 17 QLEILRQQVVSEGGPTAT---IQSRFNYAWGLIKSTDVNDERLG-----VKILTDIYKEAESRRRECLYYLTIGCYKLGE 88 (124)
T ss_dssp HHHHHHHHHHHTTGGGSC---HHHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCC---cchHHHHHHHHHcCCcHHHHHHH-----HHHHHHHHhcCchhHHHHHHHHHHHHHHHhh
Confidence 344444444444332222 13444444444444444333222 24488999889866 5899999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh
Q psy8681 263 ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~ 281 (521)
++.|+..+++++.+.|.+.
T Consensus 89 y~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 89 YSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCCCcH
Confidence 9999999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.69 E-value=0.15 Score=40.84 Aligned_cols=112 Identities=11% Similarity=-0.034 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCchhHHHH-HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHH
Q psy8681 262 NADLIRETYERAIANIPPTKFAEL-ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKVRELHE 336 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~~~a~l-e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar~l~e 336 (521)
++++|...|++|....-......| .....+.++|...|+++..... ......+..++.. ..++.+|..+|+
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~g~----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~ 83 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNS----GNGCRFLGDFYENGKYVKKDLRKAAQYYS 83 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcccc----hhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence 456777777777765322211111 2234678889999999887542 2233333333332 346899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHh
Q psy8681 337 RLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 337 ral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~~ 378 (521)
++.+.. ++.....++.++.. .|.+.+..+|..+|++|.+.-
T Consensus 84 ~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 84 KACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 998753 55556666665544 333445999999999998753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.16 E-value=2.4 Score=33.10 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED---- 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~---- 259 (521)
++++|...|+++.+...... ...++. ....+.+.+... |+++... .++.+.+.++.++..
T Consensus 8 d~~~A~~~~~kaa~~g~~~a----~~~l~~--~~~~~~~~a~~~--------~~~aa~~--g~~~a~~~Lg~~y~~g~~~ 71 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG----CLSLVS--NSQINKQKLFQY--------LSKACEL--NSGNGCRFLGDFYENGKYV 71 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH----HHHHHT--CTTSCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHHCCChhh----hhhhcc--ccccCHHHHHHH--------Hhhhhcc--cchhhhhhHHHhhhhcccc
Confidence 78899999999987632221 111111 112334444433 6666553 567777777777654
Q ss_pred cCCHHHHHHHHHHHHHc
Q psy8681 260 EGNADLIRETYERAIAN 276 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~ 276 (521)
..+...|...|++|...
T Consensus 72 ~~d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGL 88 (133)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHhhhhcc
Confidence 23456666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.70 E-value=19 Score=32.80 Aligned_cols=122 Identities=7% Similarity=0.119 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKR-----KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~kr-----r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.+|...+-+..++|..+.|..+++..- -..|...+.. ..|++.|...+.++... .++-+..++......+|..
T Consensus 175 ~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k-~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~~d~~ 252 (336)
T d1b89a_ 175 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDHT 252 (336)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH-CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCCHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHc-cCChHHHHHHHHHHHHc-CHHHHHHHHHHhccCCCHH
Confidence 467777778888898887766654321 1234443333 24667788888777764 3566666666666666655
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q psy8681 281 KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333 (521)
Q Consensus 281 ~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~ 333 (521)
.....-.+.+++.-.+..++...... ...+-.++.++++..++++.-+.
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhHHHHH
Confidence 55555556677777777776654432 23577778888888888655443
|