Psyllid ID: psy8722
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 223 | 2.2.26 [Sep-21-2011] | |||||||
| Q17R06 | 222 | Ras-related protein Rab-2 | yes | N/A | 0.937 | 0.941 | 0.715 | 2e-87 | |
| Q9UL25 | 225 | Ras-related protein Rab-2 | yes | N/A | 0.937 | 0.928 | 0.710 | 6e-87 | |
| P35282 | 222 | Ras-related protein Rab-2 | yes | N/A | 0.928 | 0.932 | 0.714 | 7e-86 | |
| P55745 | 223 | Ras-related protein Rab-2 | yes | N/A | 0.874 | 0.874 | 0.743 | 2e-83 | |
| Q6AXT5 | 223 | Ras-related protein Rab-2 | yes | N/A | 0.869 | 0.869 | 0.742 | 3e-83 | |
| Q8WQ53 | 229 | Ras-related protein Rab-2 | N/A | N/A | 0.977 | 0.951 | 0.554 | 2e-69 | |
| P34142 | 212 | Ras-related protein Rab-2 | yes | N/A | 0.910 | 0.957 | 0.579 | 1e-66 | |
| Q98932 | 216 | Ras-related protein Rab-5 | no | N/A | 0.865 | 0.893 | 0.4 | 3e-39 | |
| P51147 | 216 | Ras-related protein Rab-5 | no | N/A | 0.865 | 0.893 | 0.395 | 4e-39 | |
| Q86JP3 | 201 | Ras-related protein Rab-5 | no | N/A | 0.887 | 0.985 | 0.367 | 4e-39 |
| >sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 179/211 (84%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 14 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 73
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK+DL
Sbjct: 74 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 134 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 193
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + S GCC +G
Sbjct: 194 QPGAARRGVQIIDDE--PQAQSVGGGCCSSG 222
|
Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis. Bos taurus (taxid: 9913) |
| >sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 150/211 (71%), Positives = 179/211 (84%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 17 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 76
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 77 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 136
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 137 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 196
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + ++ GCC +G
Sbjct: 197 QPGTARRGVQIIDDE--PQAQTSGGGCCSSG 225
|
Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration (By similarity). During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis. Homo sapiens (taxid: 9606) |
| >sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 150/210 (71%), Positives = 179/210 (85%), Gaps = 3/210 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S+ GCC +G
Sbjct: 196 AGAARRGVQIIDDE--PQAQSS-GGCCSSG 222
|
Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis. Mus musculus (taxid: 10090) |
| >sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/195 (74%), Positives = 170/195 (87%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 15 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 74
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 75 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 134
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 135 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 194
Query: 193 RRGSMRRNVVVVEDE 207
+ G+ RR V +++DE
Sbjct: 195 QPGAARRGVQIIDDE 209
|
Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis. Canis familiaris (taxid: 9615) |
| >sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/194 (74%), Positives = 170/194 (87%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDE 207
G+ RR V +++DE
Sbjct: 196 AGAARRGVQIIDDE 209
|
Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/229 (55%), Positives = 165/229 (72%), Gaps = 11/229 (4%)
Query: 2 MANSLD--RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI 59
MA+ D R +T KVVLLGEG VGKTS+VLRY E+KFN+KH TLQASF+ K+LNI
Sbjct: 1 MASPSDASRRRQATVKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNI 60
Query: 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119
GKR+ LAIWDTAGQER+HALGPIYYR S GA++VYDITDEDSF K +NW+KELK+MLG+
Sbjct: 61 GGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGD 120
Query: 120 DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ L I GNKIDL++QRTV ++DA +YA+SVGA H++TSAK ++G+ E+FL+L++R+LE
Sbjct: 121 KVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRILEA 180
Query: 180 AQEFDL--------AKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
A +S + R ++V +D + P S GCC
Sbjct: 181 NPPSSSTPPESQRGAPSSHPPSQPRQRSTLIVTDDSEQP-SPKQGGGCC 228
|
Geodia cydonium (taxid: 6047) |
| >sp|P34142|RAB21_DICDI Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/207 (57%), Positives = 152/207 (73%), Gaps = 4/207 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
SFKVVLLGEGCVGKTS+V RY+++ FN+KH+ T A F K +NI GKR+ L IWDTAGQ
Sbjct: 7 SFKVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQ 66
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ERFHALGPIYYR S GA++VYDITD DSF K KNW+KELK MLGNDI L I GNK DLEK
Sbjct: 67 ERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEK 126
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
R + DAE YA+SVGA+H+ TSAK+N+GIEE+FL+L++RM+ + + + + +
Sbjct: 127 TRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRMILNSSGVVIHSNTNTTGQ 186
Query: 195 GSMR-RNVVVVEDEDLPTSSSTKSGCC 220
+ R + +V D D S + + GCC
Sbjct: 187 TTNRSERIPIVPDSD---SGNKQPGCC 210
|
Involved in the regulation of phagocytosis. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V +DA+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAPG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
RN VV E +S ++S CC
Sbjct: 193 GPGRNRVVDLQE---SSQPSRSQCC 214
|
Protein transport. Probably involved in vesicular traffic. Gallus gallus (taxid: 9031) |
| >sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+H+L P+YYR + A++VYDIT+ D+F + KNWVKEL++ +I + +AGNK DL +
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRRG 195
R V ++A+ YA + TSAK + E+F+ ++++ L K + G
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---------LPKNEPQNAAG 192
Query: 196 SMRRNVVVVEDEDLPTSSSTKSGCC 220
+ RN V E+ P S +S CC
Sbjct: 193 APSRNRGVDLQENSPAS---RSQCC 214
|
Protein transport. Probably involved in vesicular traffic. Canis familiaris (taxid: 9615) |
| >sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 131/212 (61%), Gaps = 14/212 (6%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
N++ + FK+VLLGE VGK+S+VLR+V F + +T+ A+FL + + + + I
Sbjct: 3 NNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEI 62
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
WDTAGQER+H L P+YYR + A++VYDI EDSFE+ WVKEL++ +I + +AGN
Sbjct: 63 WDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGN 122
Query: 129 KIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188
K+DL +R V +A++YA+ G + TSAK ++ + E+F+E+++++ +
Sbjct: 123 KLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK---------- 172
Query: 189 SELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ +R GS R + +++ + + K+ CC
Sbjct: 173 TPTTRPGSGRVAIAPIDNGN----TGKKNKCC 200
|
Required for the fusion of plasma membranes and early endosomes. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 223 | ||||||
| 149898836 | 218 | Ras-related small GTPase [Triatoma infes | 0.977 | 1.0 | 0.769 | 7e-96 | |
| 307203700 | 243 | Ras-related protein Rab-21 [Harpegnathos | 0.914 | 0.839 | 0.739 | 3e-87 | |
| 332022383 | 239 | Ras-related protein Rab-21 [Acromyrmex e | 0.892 | 0.832 | 0.761 | 1e-86 | |
| 403272140 | 338 | PREDICTED: ras-related protein Rab-21 [S | 0.937 | 0.618 | 0.715 | 3e-86 | |
| 322778765 | 228 | hypothetical protein SINV_03538 [Solenop | 0.892 | 0.872 | 0.761 | 4e-86 | |
| 307190847 | 224 | Ras-related protein Rab-21 [Camponotus f | 0.905 | 0.901 | 0.745 | 4e-86 | |
| 440905226 | 214 | Ras-related protein Rab-21, partial [Bos | 0.950 | 0.990 | 0.705 | 7e-86 | |
| 432943838 | 220 | PREDICTED: ras-related protein Rab-21-li | 0.946 | 0.959 | 0.714 | 8e-86 | |
| 115496760 | 222 | ras-related protein Rab-21 [Bos taurus] | 0.937 | 0.941 | 0.715 | 1e-85 | |
| 326381131 | 226 | ras-related protein Rab-21-like [Acyrtho | 0.941 | 0.929 | 0.714 | 1e-85 |
| >gi|149898836|gb|ABR27886.1| Ras-related small GTPase [Triatoma infestans] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/221 (76%), Positives = 195/221 (88%), Gaps = 3/221 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA+ L S Y+FKVVLLGEGCVGKTSVVLRYVEDKFNEKH+TTLQA+FLNKKLNI G
Sbjct: 1 MADQLVNGGSGNYNFKVVLLGEGCVGKTSVVLRYVEDKFNEKHLTTLQATFLNKKLNIGG 60
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
KR+NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSF+KVKNWVKELKKMLG++I
Sbjct: 61 KRINLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFQKVKNWVKELKKMLGSEI 120
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
CLTIAGNKIDL+K+R V E AE YA SVGAVHFHTSAK N GIEEMFLEL+QRM+++AQ
Sbjct: 121 CLTIAGNKIDLQKERNVPVETAENYAASVGAVHFHTSAKQNTGIEEMFLELTQRMMQRAQ 180
Query: 182 EFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCLT 222
E ++ +ASEL+R SMRRN+V+V++E+ T+ +KS CC T
Sbjct: 181 EQEIQRASELTRTNSMRRNIVIVDEEE--TAPPSKS-CCGT 218
|
Source: Triatoma infestans Species: Triatoma infestans Genus: Triatoma Family: Reduviidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307203700|gb|EFN82666.1| Ras-related protein Rab-21 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 182/207 (87%), Gaps = 3/207 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y+FKVVLLGEGCVGKTSV LRYVEDKFN++HI+T+QASFLNKKLNI GKR+NLAIWDTAG
Sbjct: 12 YNFKVVLLGEGCVGKTSVALRYVEDKFNDRHISTVQASFLNKKLNINGKRVNLAIWDTAG 71
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE+FHALGPIYYRMSNGA+LVYDITDED+F+KVKNWVKELKKMLG++ICL IAGNK+DLE
Sbjct: 72 QEKFHALGPIYYRMSNGAILVYDITDEDTFQKVKNWVKELKKMLGSEICLAIAGNKVDLE 131
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K R V E+AE+YA+ VGA+HFHTSAK+N+ IEEMFL+L++RM++ A E + + S L+R
Sbjct: 132 KDRNVAIEEAEEYAKQVGAMHFHTSAKLNQNIEEMFLDLTRRMMQHADEAE--QKSTLTR 189
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCC 220
S RRNVVVVEDE + S T+S CC
Sbjct: 190 TNSTRRNVVVVEDE-IEQSQPTRSSCC 215
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332022383|gb|EGI62695.1| Ras-related protein Rab-21 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 153/201 (76%), Positives = 178/201 (88%), Gaps = 2/201 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y+FKVVLLGEGCVGKTSV LRYVEDKFN+KHITTLQASFLNKKLNI GKR+NLAIWDTAG
Sbjct: 10 YNFKVVLLGEGCVGKTSVALRYVEDKFNDKHITTLQASFLNKKLNINGKRVNLAIWDTAG 69
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE+FHALGPIYYRMSNGA+LVYDITDED+F+KVKNWVKELKKMLG++ICL IAGNK+DLE
Sbjct: 70 QEKFHALGPIYYRMSNGAILVYDITDEDTFQKVKNWVKELKKMLGSEICLVIAGNKVDLE 129
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K R V E+AE+YA+ VGA+HFHTSAK+N+ IEEMFL+L+QRM+++A E + + S L+R
Sbjct: 130 KDRNVATEEAEEYAKQVGAMHFHTSAKLNQNIEEMFLDLTQRMMQRADEAE--QKSTLTR 187
Query: 194 RGSMRRNVVVVEDEDLPTSSS 214
S RRNVV+VEDE T S
Sbjct: 188 TNSTRRNVVMVEDEAEQTQPS 208
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403272140|ref|XP_003927941.1| PREDICTED: ras-related protein Rab-21 [Saimiri boliviensis boliviensis] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 180/211 (85%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 130 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 189
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 190 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 249
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 250 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 309
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + ++ GCC +G
Sbjct: 310 QPGTARRGVQIIDDE--PQAQTSGGGCCSSG 338
|
Source: Saimiri boliviensis boliviensis Species: Saimiri boliviensis Genus: Saimiri Family: Cebidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|322778765|gb|EFZ09181.1| hypothetical protein SINV_03538 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/201 (76%), Positives = 177/201 (88%), Gaps = 2/201 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y+FKVVLLGEGCVGKTSV LRYVEDKFN+KHITTLQASFLNKKLNI GKR+NLAIWDTAG
Sbjct: 10 YNFKVVLLGEGCVGKTSVALRYVEDKFNDKHITTLQASFLNKKLNINGKRVNLAIWDTAG 69
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE+FHALGPIYYRMSNGA+LVYDITDED+F+KVKNWVKELKKMLG++ICL IAGNK+DLE
Sbjct: 70 QEKFHALGPIYYRMSNGAILVYDITDEDTFQKVKNWVKELKKMLGSEICLVIAGNKVDLE 129
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K R V E+AE+YA+ VGA+HFHTSAK+N+ IEEMFL+L+QRM++ A E + + S L+R
Sbjct: 130 KDRNVAIEEAEEYAKQVGAMHFHTSAKLNQNIEEMFLDLTQRMMQHADEAE--QKSTLTR 187
Query: 194 RGSMRRNVVVVEDEDLPTSSS 214
S RRNVV+VEDE T S
Sbjct: 188 TNSTRRNVVMVEDEAEQTQPS 208
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307190847|gb|EFN74693.1| Ras-related protein Rab-21 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/204 (74%), Positives = 180/204 (88%), Gaps = 2/204 (0%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
+ +Y+FKVVLLGEGCVGKTSV LRYVEDKFN+KHITTLQASFLNKKLNI GKR+NLAIWD
Sbjct: 8 TGSYNFKVVLLGEGCVGKTSVALRYVEDKFNDKHITTLQASFLNKKLNINGKRVNLAIWD 67
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQE+FHALGPIYYRMSNGA+LVYDITDED+F+KVKNWVKELKKMLG++ICL IAGNK+
Sbjct: 68 TAGQEKFHALGPIYYRMSNGAILVYDITDEDTFQKVKNWVKELKKMLGSEICLVIAGNKV 127
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
DLEK R V ++AE+YA+ VGA+HFHTSAK+N+ IEEMFL+L++RM+E+A E + + S
Sbjct: 128 DLEKDRNVAIDEAEEYAKQVGAMHFHTSAKLNQNIEEMFLDLTRRMMERADEAE--QKST 185
Query: 191 LSRRGSMRRNVVVVEDEDLPTSSS 214
L+R S RRNVV+VEDE T S
Sbjct: 186 LTRTNSTRRNVVMVEDESEHTQPS 209
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|440905226|gb|ELR55633.1| Ras-related protein Rab-21, partial [Bos grunniens mutus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 180/214 (84%), Gaps = 2/214 (0%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIW
Sbjct: 3 AGRTYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 62
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK
Sbjct: 63 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 122
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
+DLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK +
Sbjct: 123 VDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGN 182
Query: 190 ELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
S+ G+ RR V +++DE P + S GCC +G
Sbjct: 183 GSSQPGAARRGVQIIDDE--PQAQSVGGGCCSSG 214
|
Source: Bos grunniens mutus Species: Bos grunniens Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432943838|ref|XP_004083295.1| PREDICTED: ras-related protein Rab-21-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 178/214 (83%), Gaps = 3/214 (1%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIW
Sbjct: 10 SNRTYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNITGKRVNLAIW 69
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQERFHALGPIYYR SNGAVLVYD+TDEDSF+KVKNWVKEL+KMLGNDICL I GNK
Sbjct: 70 DTAGQERFHALGPIYYRDSNGAVLVYDVTDEDSFQKVKNWVKELRKMLGNDICLCIVGNK 129
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
IDL+K R V EDAE YA+SVGA H+HTSAK+N+GIEE+FL+L +RM+E A + AK +
Sbjct: 130 IDLDKDRHVSVEDAESYAESVGAKHYHTSAKLNKGIEELFLDLCKRMMETAHAEERAKGN 189
Query: 190 ELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
S+ + RR V +V+DE T + GCC +G
Sbjct: 190 GASQSAATRRGVQIVDDEPQATPA---GGCCSSG 220
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|115496760|ref|NP_001068785.1| ras-related protein Rab-21 [Bos taurus] gi|122144675|sp|Q17R06.1|RAB21_BOVIN RecName: Full=Ras-related protein Rab-21; Flags: Precursor gi|109658186|gb|AAI18089.1| RAB21, member RAS oncogene family [Bos taurus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 179/211 (84%), Gaps = 2/211 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 14 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 73
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK+DL
Sbjct: 74 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 134 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 193
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + S GCC +G
Sbjct: 194 QPGAARRGVQIIDDE--PQAQSVGGGCCSSG 222
|
Source: Bos taurus Species: Bos taurus Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|326381131|ref|NP_001191951.1| ras-related protein Rab-21-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/210 (71%), Positives = 175/210 (83%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
++ SFKVVLLGEGCVGKTS+VLRY EDKFN+KH++TLQASF+ KKLN+ G+R+NL+IWD
Sbjct: 15 TTAQSFKVVLLGEGCVGKTSLVLRYTEDKFNDKHVSTLQASFVKKKLNLNGRRINLSIWD 74
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFHALGPIYYRMSNGA+LVYDITDEDSF+KVKNW+KELKKMLG++ICL IAGNKI
Sbjct: 75 TAGQERFHALGPIYYRMSNGAILVYDITDEDSFQKVKNWIKELKKMLGSEICLVIAGNKI 134
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
DLEK RTV EDAEKYA SVGAVHFHTSAKMN GIEE+FL L + M+EKA +
Sbjct: 135 DLEKDRTVSLEDAEKYASSVGAVHFHTSAKMNSGIEEIFLSLCRMMIEKADKQTADNLVT 194
Query: 191 LSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
L+R GS RR V+++DED S + CC
Sbjct: 195 LNRSGSTRRRTVIIDDEDDVPSKESSRWCC 224
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 223 | ||||||
| UNIPROTKB|Q17R06 | 222 | RAB21 "Ras-related protein Rab | 0.937 | 0.941 | 0.715 | 2.6e-79 | |
| UNIPROTKB|F1PGI1 | 238 | RAB21 "Ras-related protein Rab | 0.932 | 0.873 | 0.719 | 5.4e-79 | |
| UNIPROTKB|P55745 | 223 | RAB21 "Ras-related protein Rab | 0.932 | 0.932 | 0.719 | 5.4e-79 | |
| RGD|1303150 | 223 | Rab21 "RAB21, member RAS oncog | 0.932 | 0.932 | 0.714 | 6.8e-79 | |
| UNIPROTKB|F1SH25 | 222 | RAB21 "Uncharacterized protein | 0.950 | 0.954 | 0.705 | 8.7e-79 | |
| UNIPROTKB|Q9UL25 | 225 | RAB21 "Ras-related protein Rab | 0.932 | 0.924 | 0.714 | 1.1e-78 | |
| UNIPROTKB|F1MPP1 | 214 | LOC781001 "Uncharacterized pro | 0.937 | 0.976 | 0.710 | 1.8e-78 | |
| MGI|MGI:894308 | 222 | Rab21 "RAB21, member RAS oncog | 0.928 | 0.932 | 0.714 | 3e-78 | |
| ZFIN|ZDB-GENE-060929-1062 | 216 | zgc:154045 "zgc:154045" [Danio | 0.937 | 0.967 | 0.706 | 6.2e-78 | |
| UNIPROTKB|F1NC27 | 228 | RAB21 "Uncharacterized protein | 0.932 | 0.912 | 0.706 | 2.1e-77 |
| UNIPROTKB|Q17R06 RAB21 "Ras-related protein Rab-21" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 151/211 (71%), Positives = 179/211 (84%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 14 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 73
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK+DL
Sbjct: 74 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 134 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 193
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + S GCC +G
Sbjct: 194 QPGAARRGVQIIDDE--PQAQSVGGGCCSSG 222
|
|
| UNIPROTKB|F1PGI1 RAB21 "Ras-related protein Rab-21" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 151/210 (71%), Positives = 179/210 (85%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 31 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 90
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 91 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 150
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 151 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 210
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S+ GCC +G
Sbjct: 211 PGAARRGVQIIDDE--PQAQSSGGGCCSSG 238
|
|
| UNIPROTKB|P55745 RAB21 "Ras-related protein Rab-21" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 151/210 (71%), Positives = 179/210 (85%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S+ GCC +G
Sbjct: 196 PGAARRGVQIIDDE--PQAQSSGGGCCSSG 223
|
|
| RGD|1303150 Rab21 "RAB21, member RAS oncogene family" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 150/210 (71%), Positives = 178/210 (84%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S GCC +G
Sbjct: 196 AGAARRGVQIIDDE--PQAQSGSGGCCSSG 223
|
|
| UNIPROTKB|F1SH25 RAB21 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 151/214 (70%), Positives = 180/214 (84%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
++ YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIW
Sbjct: 11 AARAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 70
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
DTAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK
Sbjct: 71 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 130
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
IDLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK +
Sbjct: 131 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGN 190
Query: 190 ELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
S+ G+ RR V +++DE P + S GCC +G
Sbjct: 191 GSSQPGATRRGVQIIDDE--PQAQSGGGGCCSSG 222
|
|
| UNIPROTKB|Q9UL25 RAB21 "Ras-related protein Rab-21" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 150/210 (71%), Positives = 179/210 (85%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 18 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 77
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 78 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 137
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 138 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 197
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + ++ GCC +G
Sbjct: 198 PGTARRGVQIIDDE--PQAQTSGGGCCSSG 225
|
|
| UNIPROTKB|F1MPP1 LOC781001 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 150/211 (71%), Positives = 178/211 (84%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VL Y E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 6 TYSFKVVLLGEGCVGKTSLVLCYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 65
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNK+DL
Sbjct: 66 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 125
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S
Sbjct: 126 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSS 185
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE P + S GCC +G
Sbjct: 186 QPGAARRGVQIIDDE--PQAQSVGGGCCSSG 214
|
|
| MGI|MGI:894308 Rab21 "RAB21, member RAS oncogene family" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 150/210 (71%), Positives = 179/210 (85%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTAG
Sbjct: 16 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 75
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 76 QERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 135
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + AK + S+
Sbjct: 136 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQ 195
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
G+ RR V +++DE P + S+ GCC +G
Sbjct: 196 AGAARRGVQIIDDE--PQAQSS-GGCCSSG 222
|
|
| ZFIN|ZDB-GENE-060929-1062 zgc:154045 "zgc:154045" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 149/211 (70%), Positives = 178/211 (84%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
TYSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 8 TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNITGKRVNLAIWDTA 67
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYD+TDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 68 GQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 127
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V E+AE YA+SVGA H+HTSAK+N+GIEE+FL+L +RM+E AQ + ++ + S
Sbjct: 128 EKERHVSVEEAEGYAESVGAKHYHTSAKLNKGIEELFLDLCKRMMETAQLEERSRGNGAS 187
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ RR V +V+DE P ++ GCC +G
Sbjct: 188 NSSTGRRGVQIVDDE--PQAAVPAGGCCTSG 216
|
|
| UNIPROTKB|F1NC27 RAB21 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 149/211 (70%), Positives = 178/211 (84%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
++SFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTLQASFL KKLNI GKR+NLAIWDTA
Sbjct: 21 SFSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTA 80
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDL
Sbjct: 81 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 140
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
EK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E AQ + A+ + S
Sbjct: 141 EKERHVSVQEAETYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERARGNGSS 200
Query: 193 RRGSMRRNVVVVEDEDLPTSSSTKSGCCLTG 223
+ G+ RR V +++DE SS GCC +G
Sbjct: 201 QSGTARRGVQIIDDEPQVQSSG---GCCSSG 228
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P34142 | RAB21_DICDI | No assigned EC number | 0.5797 | 0.9103 | 0.9575 | yes | N/A |
| P36586 | YPT5_SCHPO | No assigned EC number | 0.3918 | 0.9372 | 0.9905 | yes | N/A |
| Q9SN68 | RAF2B_ARATH | No assigned EC number | 0.4312 | 0.7174 | 0.8 | yes | N/A |
| Q17R06 | RAB21_BOVIN | No assigned EC number | 0.7156 | 0.9372 | 0.9414 | yes | N/A |
| Q8WQ53 | RAB21_GEOCY | No assigned EC number | 0.5545 | 0.9775 | 0.9519 | N/A | N/A |
| P36017 | VPS21_YEAST | No assigned EC number | 0.4204 | 0.7757 | 0.8238 | yes | N/A |
| Q6AXT5 | RAB21_RAT | No assigned EC number | 0.7422 | 0.8699 | 0.8699 | yes | N/A |
| P35282 | RAB21_MOUSE | No assigned EC number | 0.7142 | 0.9282 | 0.9324 | yes | N/A |
| P55745 | RAB21_CANFA | No assigned EC number | 0.7435 | 0.8744 | 0.8744 | yes | N/A |
| Q9UL25 | RAB21_HUMAN | No assigned EC number | 0.7109 | 0.9372 | 0.9288 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 223 | |||
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-105 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 5e-74 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-70 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-69 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 5e-67 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 4e-57 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 7e-54 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-48 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 2e-48 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 9e-48 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 4e-47 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-46 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-46 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 5e-43 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-41 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 4e-41 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 9e-41 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 1e-40 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 1e-38 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-38 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-38 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 1e-37 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 2e-37 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 6e-36 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-35 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 2e-35 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 4e-35 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 6e-35 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 9e-35 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 2e-34 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 2e-34 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 1e-33 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 2e-33 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 1e-32 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-30 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 4e-30 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 9e-29 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 3e-28 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 3e-28 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 4e-28 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 1e-27 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 2e-27 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 2e-27 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 2e-27 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 1e-26 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 2e-26 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 3e-26 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 1e-25 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-25 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 3e-25 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 6e-25 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 8e-25 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 2e-24 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 4e-24 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 1e-23 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-23 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-22 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-22 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 2e-22 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 5e-22 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 2e-21 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 2e-21 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 3e-21 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-20 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 1e-20 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 2e-20 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 5e-20 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 2e-19 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 4e-19 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 2e-18 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 3e-18 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-18 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 7e-18 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 2e-17 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 5e-17 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 1e-16 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 2e-16 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 4e-16 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-15 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 4e-15 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 4e-14 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 9e-11 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 1e-10 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 2e-10 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 5e-10 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 1e-09 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 1e-09 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-08 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 1e-08 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 1e-07 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-07 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-06 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-06 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 6e-06 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-05 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 2e-05 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 4e-05 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 6e-05 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-04 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-04 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 3e-04 | |
| PLN00023 | 334 | PLN00023, PLN00023, GTP-binding protein; Provision | 4e-04 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 5e-04 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 6e-04 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-04 | |
| cd01892 | 180 | cd01892, Miro2, Mitochondrial Rho family 2 (Miro2) | 0.004 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = e-105
Identities = 116/162 (71%), Positives = 140/162 (86%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKVVLLGEG VGKTS+VLRYVE+KFNEKH +T QASF K +NI GKR++LAIWDTAGQE
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+HALGPIYYR ++GA+LVYDITD DSF+KVK W+KELK+M GN+I L I GNKIDLE+Q
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
R V + +AE+YA+SVGA HF TSAK +GIEE+FL L++RM+
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 5e-74
Identities = 70/159 (44%), Positives = 112/159 (70%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+ VGKTS++LR+V++KF+E + +T+ F +K + + GK++ L IWDTAGQE
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF ++ YYR ++GA+LVYD+T+ +SFE + W+ ELK+ +I + + GNK DLE +
Sbjct: 61 RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
R V E+A+++A+ G + F TSAK ++E F L++
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-70
Identities = 74/163 (45%), Positives = 115/163 (70%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VLLG+ VGK+S+VLR+V+++F+E +T+ A+FL + +N+ + IWDTAGQ
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ER+ +L P+YYR + A++VYDIT E+SFEK K+WVKEL++ +I + +AGNK DLE
Sbjct: 61 ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+R V E+A++YA G + TSAK + E+F E+++++
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 1e-69
Identities = 75/162 (46%), Positives = 110/162 (67%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VL+G+G VGK+S+++R+ ++KF E++I T+ F K + + GK + L IWDTAGQER
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F AL P+YYR + G +LVYDIT DSFE VK W++E+ + ++ + + GNK DLE QR
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120
Query: 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
V E+ E A+ +G TSAK N +EE F EL++ +L+
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 5e-67
Identities = 74/164 (45%), Positives = 117/164 (71%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++L+G+ VGK+S++ R+ + KF+E++ +T+ F K + + GKR+ L IWDTAGQE
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF ++ YYR + GA+LVYDIT+ +SFE ++NW+KEL++ ++ + + GNK DLE+Q
Sbjct: 61 RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V +E+AE +A+ G F TSAK N +EE F EL++ +L++
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-57
Identities = 72/166 (43%), Positives = 108/166 (65%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ ED FN I+T+ F + + + GK++ L IWDTAG
Sbjct: 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDITDE SFE +KNW++ + + D+ + GNK D+E
Sbjct: 62 QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDME 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++R V +E+ E A+ G TSAK N +EE FL L++ +L+K
Sbjct: 122 EKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 7e-54
Identities = 63/159 (39%), Positives = 101/159 (63%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K+V LG+ VGKTS++ R++ D F+ ++ T+ FL+K + + K + L +WDTAGQE
Sbjct: 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S+ AV+VYDIT+ SF+ W+ +++ GND+ + + GNK DL +
Sbjct: 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
R V E+ EK A+ A+ TSAK ++++F +++Q
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQ 159
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-48
Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K++L+G+ VGK+S++LR+ +D F+E +T+ F K + + GK++ LAIWDTAGQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTI-AGNKIDLEK 134
RF L YYR + G +LVYD+T D+F+ + W+ EL N + + GNKID E
Sbjct: 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKE- 119
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
R V +E+ +K+A+ + TSAK G+++ F EL ++
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEK 160
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-48
Identities = 61/161 (37%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V+LG G VGK+++ +R+V +F E++ T++ S+ K++ + G+ L I DTAGQE
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSY-RKQIVVDGETYTLDILDTAGQEE 59
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQ 135
F A+ Y R +G +LVY IT +SFE++KN +++ ++ D+ + + GNK DLE +
Sbjct: 60 FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V E+ E A+ G TSAK N I+E+F L + +
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 9e-48
Identities = 65/172 (37%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + L IWDTAGQE
Sbjct: 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKID 131
RF +LG +YR ++ VLVYD+T+ SFE + +W E + + GNKID
Sbjct: 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120
Query: 132 LEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
LE++R V + A+++ +S G +F TSAK +++ F +++ LE+ +E
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-47
Identities = 64/159 (40%), Positives = 98/159 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK+VL+G+ VGK++++ R+ ++FN +T+ F + + I GK + IWDTAG
Sbjct: 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ A+ YYR + GA+LVYDIT + +FE V+ W+KEL+ ++I + + GNK DL
Sbjct: 62 QERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
R V E+A+ +A+ G TSA +EE F +L
Sbjct: 122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-46
Identities = 59/166 (35%), Positives = 106/166 (63%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++ V +A+++A +G TSAK +EE F+ +++ + ++
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 4e-46
Identities = 71/161 (44%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK++L+G+ VGKT VV R+ F+E+ T+ F K L I GKR+ L IWDTAG
Sbjct: 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR +NGA++ YDIT SFE V +W++E++K +++ L + GNK DLE
Sbjct: 62 QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121
Query: 134 KQRTVMQEDAEKYAQSVGAVH-FHTSAKMNRGIEEMFLELS 173
+QR V+ E+A A+ G + TSAK + +EE FL ++
Sbjct: 122 EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 5e-43
Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 16/217 (7%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTA 72
Y F+++++G+ VGK+S++ R+ E +F E T+ F ++ + I G R+ L +WDTA
Sbjct: 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKID 131
GQERF ++ YYR S G +LV+DIT+ +SFE V +W++E + + + + G+K D
Sbjct: 61 GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASEL 191
LE QR V +E+AEK A+ +G + TSA+ +EE F L+Q + E K EL
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYE------RIKRGEL 174
Query: 192 S--------RRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ G +E+ +S KS CC
Sbjct: 175 CALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-41
Identities = 66/162 (40%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G+ VGK+S++LR+ ++ F+ +ITT+ F + + I G+R+ L IWDTAGQE
Sbjct: 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR ++G ++VYD+T+ +SF VK W++E+++ +D+C + GNK D ++
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPER 125
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+ V EDA K+A +G F TSAK N +EEMF +++ +L
Sbjct: 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 4e-41
Identities = 58/166 (34%), Positives = 103/166 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK +++G+ VGK+ ++L++ + +F H T+ F + + I GK++ L IWDTAG
Sbjct: 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE F ++ YYR + GA+LVYDIT ++F + +W+++ ++ +++ + + GNK DLE
Sbjct: 63 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E+ E +A+ G + TSAK +EE F+ ++ + +K
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 9e-41
Identities = 60/156 (38%), Positives = 95/156 (60%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK +++G GK+ ++ +++E+KF + T+ F ++ +N+ GK + L IWDTAGQE
Sbjct: 1 FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF ++ YYR + GA+LVYDIT +SF + NW+ + + + DI + + GNK DLE
Sbjct: 61 RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171
R V +A ++AQ G + TSA +EE FL+
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-40
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KVV+LG+ VGKTS+V RYV +F + T+ A+F+ K++ + + + L IWDTAG E
Sbjct: 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+ A+ IYYR + A++ YD+TD SFE+ K WVKEL+ L + + G K DL +Q
Sbjct: 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIEQ 120
Query: 136 ----RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
R V D + +A + A HF TS+K + ++E+F ++++ + +A
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQ 172
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-38
Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 19/228 (8%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA+ +D Y FK+VL+G+ VGK++++ R+ ++F + +T+ F + L + G
Sbjct: 1 MAHRVDHEYD--YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG 58
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
K + IWDTAGQER+ A+ YYR + GA+LVYDIT +F+ V+ W++EL+ ++I
Sbjct: 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI 118
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF----LELSQRML 177
+ +AGNK DL R+V +ED + A+ G TSA +E+ F LE+ +
Sbjct: 119 VIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIIS 178
Query: 178 EK---AQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCLT 222
+K AQE A S L +G+ + V D TS + K GCC T
Sbjct: 179 KKALAAQE--AAANSGLPGQGT----TINVAD----TSGNNKRGCCST 216
|
Length = 216 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 1e-38
Identities = 63/164 (38%), Positives = 104/164 (63%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK+VL+G VGKT +V R+ + F T+ F+ K + I G+++ L IWDTAG
Sbjct: 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAG 65
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR +N +L YDIT E+SF + W++E+++ N + + GNKIDL
Sbjct: 66 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
++R V Q+ AE+++ + + TSAK + +E++FL+L+ R++
Sbjct: 126 ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-38
Identities = 66/212 (31%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S Y FK +++G+ VGK+ ++L++ + +F H T+ F + + I K + L IWD
Sbjct: 2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ ++ ++ + + GNK
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE--FDLAKA 188
DL +R V E+ E++A+ G + SAK + +EE F++ + ++ +K Q+ FD++
Sbjct: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNE 181
Query: 189 SELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
S + G + +SS GCC
Sbjct: 182 SYGIKVGYGAIPGASGGRD---GTSSQGGGCC 210
|
Length = 210 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 1e-37
Identities = 64/164 (39%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+V+++G VGKTS++ R+ +D F E +T+ F K + + GK++ L IWDTAGQER
Sbjct: 2 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F+++ YYR + G +LVYDIT +++F+ + W+K + K D L + GNK+D E R
Sbjct: 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121
Query: 137 TVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRMLEK 179
+ ++ EK+AQ + + F SAK N ++E+FL+L +L+K
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-37
Identities = 60/164 (36%), Positives = 96/164 (58%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAGQE
Sbjct: 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E +
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V E + A +G F SAK N ++++F L + +K
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-36
Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++++ F + + T++ S+ K++ I G+ L I DTAGQE
Sbjct: 1 YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQE 59
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
F A+ Y R G +LVY ITD SFE++K + +++ ++ D + + + GNK DLE
Sbjct: 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+R V E+ ++ A+ G TSAK ++E F +L
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 1e-35
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 17/223 (7%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M +S ++S SFK++L+G+ VGK+S+++ ++ E T+ F K+L + G
Sbjct: 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGND 120
KRL L IWDTAGQERF L YYR + G +LVYD+T ++F + + W KE++ N
Sbjct: 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119
Query: 121 ICL-TIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
C+ + GNK+D E +R V +E+ A+ G + SAK +E+ F EL+ +++E
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME- 178
Query: 180 AQEFDLAKASELSRRGS--MRRNVVVVEDEDLPTSSSTKSGCC 220
L GS ++RN++ + E P + GCC
Sbjct: 179 --------VPSLLEEGSTAVKRNILKQKPEHQPPPN---GGCC 210
|
Length = 211 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-35
Identities = 56/166 (33%), Positives = 99/166 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK +++G+ VGK+ ++ ++ E KF T+ F + + + G+++ L IWDTAG
Sbjct: 1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DLE
Sbjct: 61 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
QR V E+A+++A G + SAK +E+ FLE ++++ +
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-35
Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 3 YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
F A+ Y R G +LVY ITD SFE++ + +++ ++ D + + + GNK DLE
Sbjct: 62 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+R V E+ ++ A+ G TSAK ++E F +L
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDL 159
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-35
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 16/206 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FKV+L+G+ VGKT +++R+ + F I T+ F NK + + G ++ L IWDTAGQ
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ERF ++ YYR ++ +L+YD+T++ SF+ ++ W+ E+ + +D+ + + GNK D+
Sbjct: 61 ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
+R V +ED E+ A+ G TSAK +E F A A EL R
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF---------------TAVAKELKHR 165
Query: 195 GSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ + + +D SGCC
Sbjct: 166 SVEQPDEPKFKIQDYVEKQKKSSGCC 191
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-35
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 10/167 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + L IWDTAGQE
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI------CLTIAGNK 129
RF +L +YR S+ +L + + D SF+ + NW KE + D+ I GNK
Sbjct: 66 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF--IYYADVKEPESFPFVILGNK 123
Query: 130 IDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLELSQR 175
ID+ +R V E+A+ + + G +F TSAK + F E +R
Sbjct: 124 IDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-34
Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 20/213 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL-NLAIWDTAGQ 74
FKV+++G+ VGKTS++ RYV F++ + T+ F K + + L +WD AGQ
Sbjct: 1 FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL-KKMLGND----ICLTIAGNK 129
ERF + +YY+ + GA++V+D+T +FE V W +L K+ + L +A NK
Sbjct: 61 ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA-NK 119
Query: 130 IDLEKQRT-VMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187
DL+K+R E +++ + G + F TSAK N IEE L + +L+ + +
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPE 179
Query: 188 ASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
E + V D T++S CC
Sbjct: 180 PDEDN-----------VIDLKQETTTSKSKSCC 201
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 2e-34
Identities = 58/163 (35%), Positives = 98/163 (60%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
F+++L+G+ VGKT ++ R+ +++F+ HI+T+ F K + + G ++ + IWDTAGQE
Sbjct: 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
R+ + YYR + G LVYDI+ E S++ + WV ++ + + + GNK D E++
Sbjct: 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
R V E K A+ G F TSA N+ I+E F L++ +L+
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQ 163
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-33
Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G+ VGKT + R+ +F E+ T+ F + + I G+R+ + +WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62
Query: 76 RF-HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLE 133
RF ++ YYR + V VYD+T+ SF + +W++E ++ L N++ + GNK DL
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEMFLELSQRM 176
+Q V + A+++A + F TSAK N +E +F+ L+ ++
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-33
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 17/168 (10%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--------NIAGK--R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ +GK R
Sbjct: 3 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFR 62
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC- 122
++L +WDTAGQERF +L ++R + G +L++D+T E SF V+NW+ +L+ + C
Sbjct: 63 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQA---HAYCE 119
Query: 123 ---LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167
+ + GNK DL QR V + A + A G +F TSA + +E+
Sbjct: 120 NPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-32
Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK--LNIAGKRLNLAIWDTAGQ 74
KV+++G G VGK+S++ R+V+ F + + T+ FL K+ L + + + L +WDTAGQ
Sbjct: 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E F A+ YYR + +LV+ TD +SFE +++W KE + DI + + KIDL
Sbjct: 62 EEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGDIPMVLVQTKIDLLD 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
Q + E+AE A+ + F TS K + + E+F L+++
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-30
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
FK+V+LG+G VGKT+++ R V D+F E + T+ K + + + L +WDTA
Sbjct: 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131
GQE + +L P YYR +NG ++VYD T E S E + W++EL+++ +D+ + + GNKID
Sbjct: 63 GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
L +++ +E + + V + A + LE S + L +L
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176
|
Length = 219 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-30
Identities = 53/158 (33%), Positives = 92/158 (58%), Gaps = 5/158 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+ +G VGK+ ++ RY E +F K++ T+ + KK+++ K + + +D +G
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-----NDICLTIAGNKID 131
+ + +Y+ + G +LVYD+TD SFE + +W+KE+K+ G +I + + NKID
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
L K R V +++ +A+S G +F TSA G+ EMF
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-29
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTAGQ 74
K+V+LG+G GKTS++ R+ ++ F + + T+ F ++++ + G + L +WD GQ
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN---DICLTIAGNKID 131
+ + Y + LVYDIT+ SFE +++W+ +KK+ + + GNK D
Sbjct: 61 QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF---------LELSQRMLEKAQE 182
LE R V E ++AQ SAK + F ++LSQ LE++Q
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQR 180
Query: 183 FDLAKASELSRR 194
A S S R
Sbjct: 181 VVKADVSRYSER 192
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-28
Identities = 55/158 (34%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + L I DTAGQE
Sbjct: 1 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQLNILDTAGQE 59
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y+R G +LV+ ITD +SF + + +++ ++ +D + L + GNK DLE
Sbjct: 60 DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+R V E+A A+ G + TSAK ++++F +L
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDL 157
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-28
Identities = 49/163 (30%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KVV+LG G VGK+++ +++V F EK+ T++ F K++ + L I DTAG E
Sbjct: 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F ++ +Y + G ++VY + ++ +F+ +K ++ ++ G + + + + GNK+DLE
Sbjct: 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+R V + A+ G TSAK + E+F E+ ++M
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-28
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 19/170 (11%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN--KKLNIAGKRLNLAIWDTAGQ 74
K+V++G+G VGKT +++ Y +KF +++ T F N + + GK++NL +WDTAGQ
Sbjct: 2 KIVVVGDGAVGKTCLLISYTTNKFPTEYVPT---VFDNYSANVTVDGKQVNLGLWDTAGQ 58
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDL- 132
E + L P+ Y ++ +L + + SFE VK W E+K N + + + G KIDL
Sbjct: 59 EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPN-VPIILVGTKIDLR 117
Query: 133 ----------EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLE 171
+KQ+ + E+ EK A+ +GAV + SA G++E+F E
Sbjct: 118 DDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDE 167
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-27
Identities = 54/164 (32%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V++ F E + T++ S+ K++ I G++ +L I DTAG E
Sbjct: 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F A+ +Y + G +LVY +T E S ++ +++ ++ +D + + + GNK DLE
Sbjct: 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRML 177
R V +ED +Q G V F+ TSA+ ++E+F++L ++++
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-27
Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+ +LG VGK+S+ +++VE F E + T++ +F +K + G+ +L I DTAGQ+
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61
Query: 77 FHALGPIYYRMS-NGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ L P Y + +G +LVY +T SFE VK ++ MLG + + + + GNK DL
Sbjct: 62 YSIL-PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+R V E+ +K A+S GA +SAK N +EE F + ++E+ +
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF----ELLIEEIE 163
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-27
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQE 75
+V++G+G VGKT +++ Y + F E ++ T F N ++ GK + L +WDTAGQE
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPT---VFENYSADVEVDGKPVELGLWDTAGQE 57
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDL-- 132
+ L P+ Y ++ ++ + + SFE VK W E+K N + + G K+DL
Sbjct: 58 DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILV-GTKLDLRN 116
Query: 133 ----------EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLE 171
+KQ V E + A+ +GAV + SA G+ E+F E
Sbjct: 117 DKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-27
Identities = 53/162 (32%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ S+ K++ + G++ L I DTAG E
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
+F A+ +Y + G VLVY IT + +F +++ +++ ++ D+ + + GNK DLE
Sbjct: 61 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +E + A+ G TSAK + E+F +L +++
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-26
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 51/237 (21%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KVVLLG+ VGKTS++ RY+E +F + ++T+ +F K+ N++IWDTAG+E+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQ 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL---- 132
FH LG +Y R + +L YD+++ S E++++ L D + GNK+DL
Sbjct: 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116
Query: 133 ---------------EKQRTVMQEDAEKYAQSV--------------GAVHFHTSAKMNR 163
E QR V EDA+ + + + + F TSAK
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176
Query: 164 GIEEMFLELSQRMLEKAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
++E+F L F+L L++R R V +LP +KS CC
Sbjct: 177 NVDELFEYL----------FNLVLPLILAQRAEANRTQGTV---NLPNPKRSKSKCC 220
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-26
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK++V ++++ F + H T++ ++ + I + L I DTAGQ
Sbjct: 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KTQARIDNEPALLDILDTAGQA 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEK 134
F A+ Y R G ++ Y +TD SF++ + + + ++ L DI L + GNK+DLE+
Sbjct: 62 EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
QR V E+ A+ F TSA + I++ F L + + K
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESM 169
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 3e-26
Identities = 51/158 (32%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ +++++ F + T++ S+ K+ I G+ L I DTAGQE
Sbjct: 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEIDGQWARLDILDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
F A+ Y R G +LV+ +TD SFE+V + ++ ++ ++ + + GNK DLE
Sbjct: 62 EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
QR V +E+ ++ A+ + + TSAK +++ F +L
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (243), Expect = 1e-25
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 38 DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97
D F+ + +T+ FL+K L + + L +WDTAGQERF +L P Y R S A++VYDI
Sbjct: 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62
Query: 98 TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157
T+ SFE W++++ G D+ + + GNK DL R V E+ + AQ + T
Sbjct: 63 TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122
Query: 158 SAKMNRGIEEMFLELSQRM 176
SAK I+ +F +++ ++
Sbjct: 123 SAKAGHNIKVLFKKIAAKL 141
|
Length = 176 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-25
Identities = 51/162 (31%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+G GKT+ V R++ +F +K++ TL + ++ +WDTAGQE
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+F L YY A++++D+T +++ V NW ++L ++ N I + + GNK+D+ K
Sbjct: 61 KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI-KD 118
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
R V + + + ++ SAK N E+ FL L++++L
Sbjct: 119 RKVKPKQIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKLL 159
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 3e-25
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK++L+G+G VGKT+ V R++ +F +K+I TL K + +WDTAGQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E+F L YY A++++D+T +++ V NW +++ ++ N I + + GNK+D+ K
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN-IPIVLVGNKVDV-K 126
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ------------- 181
R V + + ++ SAK N E+ FL L++R+
Sbjct: 127 DRQVKARQI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEE 185
Query: 182 -EFDLAKASELSRRGSMRRNVVVVEDED 208
+ D ++ + NV + +D+D
Sbjct: 186 IQIDPELVAQAEKELQAAANVPLPDDDD 213
|
Length = 215 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-25
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 42/203 (20%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN--------EKHITTLQASFLNKKLNIAGKRLN 65
K+V++G+G GKT +++ Y + F E ++TTLQ GK +
Sbjct: 2 LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVP--------NGKIIE 53
Query: 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDIC-- 122
LA+WDTAGQE + L P+ Y + ++ Y + + S + V++ W E+ N C
Sbjct: 54 LALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPG 108
Query: 123 --LTIAGNKIDLEKQRT------------VMQEDAEKYAQSVGAVHF-HTSAKMNRGIEE 167
+ + G K DL K + V E E A+S+GAV + SAK+ ++E
Sbjct: 109 TPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDE 168
Query: 168 MF---LELSQRMLEKAQEFDLAK 187
+F + ++ +A K
Sbjct: 169 VFDAAINVALSKSGRAARKKKKK 191
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 8e-25
Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KV+++G+ VGKT ++ R+ +D F++ + T+ F ++ + G +L +WDTAGQER
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEK- 134
F + YYR + ++V+D+TD S E + W+++ LK+ + + L + G K DL
Sbjct: 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121
Query: 135 -QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
Q +M++DA K A+ + A ++ SA + + F ++ E
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFE 166
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-24
Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+ LLG+ +GKTS++++YVE +F+E++I TL +F+ K ++I G + +IWD GQ
Sbjct: 2 KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61
Query: 77 FHALGPIYYRMSNGAVLV---YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL- 132
F + P+ + AV + +D+T + + +K W ++ + I + + G K DL
Sbjct: 62 FINMLPL---VCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILV-GTKYDLF 117
Query: 133 -----EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
E+Q + ++ A KYA+++ A S + ++++F
Sbjct: 118 ADLPPEEQEEITKQ-ARKYAKAMKAPLIFCSTSHSINVQKIF 158
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-24
Identities = 52/158 (32%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I SFE + + +++K++ +D + + + GNK DL
Sbjct: 61 EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
RTV + A+S G + TSAK +G+EE F L
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-23
Identities = 53/163 (32%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F +K+ T++ S+ K++ + ++ L I DTAG E
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSY-RKQIEVDCQQCMLEILDTAGTE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + SF +++ ++ L+ D+ + + GNK DLE
Sbjct: 61 QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120
Query: 135 QRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRM 176
+R V +E+ + A+ G F TSAK ++E+F +L +++
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-23
Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ ++++++ F +++ T++ S+ K+ I + L I DTAGQE
Sbjct: 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + VY IT SFE++ ++ +++ ++ D + + + GNK DL+
Sbjct: 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
+R V + ++ A+S G TSAK ++E F EL
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162
|
Length = 189 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-22
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++LLG+ VGK+ +V R++ D + + ++T + GK + + WDTAGQER
Sbjct: 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136
F + YY ++ +LV+D+T + +++ + W +EL++ C+ +A NKIDL+
Sbjct: 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVA-NKIDLDPSV 120
Query: 137 TVMQEDAEKYAQSVGAVHFHTSA 159
T + +A+ ++ SA
Sbjct: 121 T---QKKFNFAEKHNLPLYYVSA 140
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-22
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 19 VLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
V++G G VGK+S++ + + E TT K+L+ +L + DT G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLV--LVDTPGLD 58
Query: 76 RFHALGP-----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
F LG + R ++ +LV D TD +S E K L+++ I + + GNKI
Sbjct: 59 EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNKI 116
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQ 174
DL ++R V + + + V SAK G++E+F +L +
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-22
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++VV+ G G VGK+S+VLR+V+ F E +I T++ ++ + ++ + L I DT G
Sbjct: 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND---ICLTIAGNKIDL 132
+F A+ + + +LVY IT + S E++K + + ++ GN+ I + + GNK D
Sbjct: 61 QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
R V + A++ TSAK N ++E+F EL
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 5e-22
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V+LG+G VGKT++ ++ + F E + T++ S+ K++ + G+ L + DTAGQE
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEE 59
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL---KKMLGNDICLTIAGNKIDLE 133
+ AL + R G +LVY IT +FE+V+ + +++ K D+ + I GNK D
Sbjct: 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V E+ A+ +G SAK N +E F L R L + ++
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV-RALRQQRQ 167
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-21
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K V++G+G VGKT +++ Y D F E+++ T+ + + + GK+ L ++DTAGQE
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQE 59
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE- 133
+ L P+ Y M++ ++ + + + SF+ VK WV ELK+ N + + G +IDL
Sbjct: 60 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPYLLIGTQIDLRD 118
Query: 134 -----------KQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171
K++ + E +K A+ +GA + SA +G++ +F E
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 2e-21
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK-HITTLQASFLNKKLNIAGKRLNLAIWDTA 72
Y K +L+G+ VGK + L ++D E + + + + + G+R+ L +WDT+
Sbjct: 5 YLLKFLLVGDSDVGKGEI-LASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQ RF + Y R + G +LVYDIT+ SF+ + W+KE+ + + + GN++ L
Sbjct: 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHL 122
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E A+ YA+ G F S N I E F EL++ +L +
Sbjct: 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-21
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++V+LG VGKT++V R++ +F E++ T++ F K +I G+ L I DT+G
Sbjct: 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL---KKMLGN------DICLTIA 126
F A+ + + +LV+ + + +SFE+V +++ K L N I + I
Sbjct: 60 PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119
Query: 127 GNKIDLEKQRTVMQEDAEKY-AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
GNK D + R V +++ E+ +F SAK N ++EMF L F L
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL----------FSL 169
Query: 186 AK-ASELSRRGSMRRNVVVVEDEDLPTSS 213
AK +E+S S+ R + V + L S
Sbjct: 170 AKLPNEMSP--SLHRKISVQYGDALHKKS 196
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-20
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTL--QASFLNKKLNIAGKRLNLAIWDTA 72
SFK+V++G+G GKT+ V R++ +F +K+ T+ + L+ N R WDTA
Sbjct: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY--CWDTA 70
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQE+F L YY A++++D+T +++ V W ++L ++ N I + + GNK+D+
Sbjct: 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV 129
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
K R V + + + ++ SAK N E+ FL L++++
Sbjct: 130 -KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
|
Length = 219 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-20
Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKT +++ + +D+F E ++ T+ +++ + + GK++ LA+WDTAGQE
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E + W E+K N + + + GNK DL
Sbjct: 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 120
Query: 134 ----------KQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMF 169
KQ V E+ A+ +GA + SAK G+ E+F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-20
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE- 75
K+ +LG VGK+++ +R++ +F ++ L++ + ++++ I G++++L I DT GQ+
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59
Query: 76 ---RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNW---VKELKKMLGNDICLTIAGNK 129
+ + ++G VLVY ITD SF+ V ++E+KK +I + + GNK
Sbjct: 60 NEDPESLERSLRW--ADGFVLVYSITDRSSFDVVSQLLQLIREIKK-RDGEIPVILVGNK 116
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN-RGIEEMFLEL 172
DL R V E+ +K A +G + F SA N ++ +F EL
Sbjct: 117 ADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 5e-20
Identities = 43/166 (25%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K VL+G+G VGKTS+++ Y + + +++ T +F + + + GK + L + DTAGQ+
Sbjct: 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDE 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKK--------MLGN--DICLTI 125
F L P+ Y ++ +L + + + SF+ + W+ E++K ++G D+ +
Sbjct: 61 FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120
Query: 126 -AGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMF 169
++ ++ V Q A+ A+ +GA + SA + ++E+F
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-19
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 9/191 (4%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++V +G VGKT+++ R++ D F KH T++ +K+ +AG ++ + I DT+G
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQ 135
F A+ + + + LVY + D +SFE+VK +E+ ++ + + + + GNKID +
Sbjct: 60 FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119
Query: 136 RTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRM-----LEKAQEFDLAKA- 188
R V DA + F SAK N + E+F EL Q+ L A A
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRESAP 179
Query: 189 SELSRRGSMRR 199
SE+ RR M +
Sbjct: 180 SEIQRRPPMNK 190
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 4e-19
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN--IAGKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y +KF +++ T+ F N + I G+ L ++DTA
Sbjct: 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 57
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE VK WV E+ L + G +ID
Sbjct: 58 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQID 116
Query: 132 L------------EKQRTVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLE 171
L KQ+ + E EK A+ + AV + SA +G++ +F E
Sbjct: 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 2e-18
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 21 LGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL 80
+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQE+F L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ 140
YY A++++D+T +++ V NW ++L ++ N I + + GNK+D+ K R V
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV-KDRKVKA 118
Query: 141 EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+ + + ++ SAK N E+ FL L+++++
Sbjct: 119 KSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-18
Identities = 50/187 (26%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+G GKTS++ + +F E++ T+ +++ + GK + LA+WDTAGQE
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE-- 133
+ L P+ Y ++ ++ + I DS E V+ W++E+++ N + + + G K DL
Sbjct: 62 YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPN-VPVILVGLKKDLRQE 120
Query: 134 --------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQR--MLEKAQE 182
V + A+ A+++GA + SA G++++F E + R +L +
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATRAALLVRKSG 179
Query: 183 FDLAKAS 189
+ A+
Sbjct: 180 KEEPGAN 186
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-18
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA----SFLNKKLNIAGKRLNLAIWDT 71
K+V++G+ VGK++++ R N+ IT + +++ + GK + DT
Sbjct: 2 IKIVIVGDPNVGKSTLLNRL---LGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDT 58
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDIT--DEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
AGQE + A+ +YYR ++ V+DI D E ++ KE+ + + + + GNK
Sbjct: 59 AGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK 118
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
IDL + + A +A+ G SA+ + I+ F
Sbjct: 119 IDL-RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-18
Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL-NIAGKRLNLAIWDTAGQE 75
K++L+G+G VGKTS+ + + +KF+ +T + + K+ K++ L +WD GQE
Sbjct: 3 KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62
Query: 76 RFHALGPIYYRMSNGAV--LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
+HA + +++ ++ LV+D+ D +V W++++K G + + G ID
Sbjct: 63 IYHATHQFF--LTSRSLYLLVFDLRTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119
Query: 134 KQRTVMQEDA-EKYAQSVGAVHFHTSAKMNRGIEEM 168
++++ +K+ + +HF S K +GI E+
Sbjct: 120 CDEDILKKALNKKFPAIINDIHF-VSCKNGKGIAEL 154
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-17
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQ 74
K V +G+G VGKT +++ Y + F ++ T+ F N N+ G +NL +WDTAGQ
Sbjct: 3 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGNTVNLGLWDTAGQ 59
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLE 133
E ++ L P+ YR ++ +L + + + S+E V K W+ EL+ + + + G K+DL
Sbjct: 60 EDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPG-VPIVLVGTKLDL- 117
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE---KAQE 182
++D + +A GAV T+ +G E + +E K Q+
Sbjct: 118 ------RDDKQFFADHPGAVPITTA----QGEELRKQIGAAAYIECSSKTQQ 159
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-17
Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTA 72
+ K V++G+G VGKT +++ Y + F ++I T+ F N N+ GK +NL +WDTA
Sbjct: 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTA 57
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKID 131
GQE + L P+ Y ++ ++ + + SFE V+ W E++ N + + G K+D
Sbjct: 58 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GTKLD 116
Query: 132 L------------EKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEMFLE 171
L +K + A+ +GAV + SA RG++ +F E
Sbjct: 117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-16
Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K V++G+G VGKT +++ Y + F +++I T+ ++ + + + G+ ++L +WDTAGQ
Sbjct: 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLE 133
E + L + Y +N ++ + I S+E V++ W E+ N + + + G K DL
Sbjct: 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN-VPILLVGTKKDLR 120
Query: 134 KQRTVMQEDAEK------------YAQSVGAVHF-HTSAKMNRGIEEMFLELSQRML 177
+++ E+ A+ + AV + SA G++E+F E + +L
Sbjct: 121 NDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-16
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 20/175 (11%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KVV+LG+G GKTS++ + F + + T+ ++++ + + G + L++WDTAGQE
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHD-IFVDGLAVELSLWDTAGQEE 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDIC----LTIAGNKID 131
F L + Y ++ +L + + + DS E V++ W+ E++ C L + K D
Sbjct: 61 FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR-----HHCPGVKLVLVALKCD 115
Query: 132 LEKQR--------TVMQEDAEKYAQSVGAVHF-HTSAKMNRGIEEMFLELSQRML 177
L + R T+ E+ A+ + A + SAK+NRG+ E F E ++ L
Sbjct: 116 LREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-16
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
KVV++G+ GK+S++ + V +F + + + L + G L IWD G+E
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKN---WVKELKKMLGNDICLTIAGNKI 130
I+ + ++ +LVYD+TD +S +V W+ L+K LG I + + GNK+
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-15
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++++LG GKT+++ + + T F + + + +WD GQ++
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTI---GFNVETVEYKNVKFT--VWDVGGQDK 55
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY ++G + V D +D + E+ KN EL K+L L I NK DL
Sbjct: 56 IRPLWKHYYENTDGLIFVVDSSDRERIEEAKN---ELHKLLNEEELKGAPLLILANKQDL 112
Query: 133 EKQRTVMQEDAEKYAQSVGAVH-FH---TSAKMNRGIEEMFLELSQR 175
T E E +H SA G++E L ++
Sbjct: 113 PGALT-ESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-15
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 17 KVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNI--AGKRLNLAIWDTA 72
+ ++G+ VGK+++V + D F + + T + K + + + L I+D+A
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK-KMLGNDICLTIAGNKID 131
GQE F + + +VYD+T+E SF W+ ++ G + GNK D
Sbjct: 62 GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
L +R V A+ AQ+ + TSAK G E FL L++
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-14
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 25/172 (14%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITT----LQASFLNKKLNIAGKRLNLAIWDTA 72
K+VL+G+ GKT+++ + +D F E ++ T ASF + +R+ L++WDT+
Sbjct: 3 KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASF-----EVDKQRIELSLWDTS 57
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKID 131
G + + P+ Y S+ ++ +DI+ ++ + V K W E+++ N L + G K D
Sbjct: 58 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLV-GCKSD 116
Query: 132 L------------EKQRTVMQEDAEKYAQSVGAVHF-HTSAK-MNRGIEEMF 169
L ++Q V E A+ +GA + SAK + ++F
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-11
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA---GKRLNLAIWDT 71
S +V+LG GKT+V+ R KFNE T F +K+ ++ K + WD
Sbjct: 3 SLHIVMLGLDSAGKTTVLYRL---KFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDV 59
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKI 130
GQE+ L Y R ++G V V D D + E+ K + ++ K N + + + NK
Sbjct: 60 GGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQ 119
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFH----TSAKMNRGIEEMFLELSQRMLEK 179
DL V + + + + A + G++E +L + +L++
Sbjct: 120 DLPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-10
Identities = 33/126 (26%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++WDT+G
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+ + P+ Y S+ ++ +DI+ ++ + V K W E+++ N L + G K DL
Sbjct: 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRTD 124
Query: 136 RTVMQE 141
+ + E
Sbjct: 125 VSTLVE 130
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++VVLLG+ VGK+S+ + + + + +++ G+ L ++D QE
Sbjct: 1 YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEK 134
L ++ + V+VY +TD SFEK +L++ DI + + GNK DL +
Sbjct: 61 DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169
R V ++ A TSA + ++E+F
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-10
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD----- 70
+V +LG VGKT++V +++ +F E++I T + ++G+ +L I D
Sbjct: 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60
Query: 71 ----TAGQE----RFHALGPIYYRMSNGAVLVYDITDEDSFEKVK---NWVKELKKMLGN 119
TAGQE RF L R S +LVYDI DSF VK + E +
Sbjct: 61 RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115
Query: 120 DICLTIAGNKIDLEKQR 136
+ + + GNK D ++ R
Sbjct: 116 EPPIVVVGNKRDQQRHR 132
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 1e-09
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D + E ++ T+ ++ I R+ L +WDT+G
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKID---- 131
+ + P+ Y S+ ++ +DI+ ++ + V K W E ++ N L + G K+D
Sbjct: 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPN-AKLVLVGCKLDMRTD 120
Query: 132 ------LEKQR--TVMQEDAEKYAQSVGAV------------------HFHTSAKMNRGI 165
L KQR V E A+ +GAV H T A + R
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180
Query: 166 EEMFLELSQRMLEKAQE 182
+ S+R L++ +
Sbjct: 181 PSLKRSTSRRGLKRISQ 197
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 1e-09
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WDT+G
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+ + P+ Y S+ +L +DI+ + F+ +K W E+ + L I G K DL
Sbjct: 74 YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLI-GCKTDL--- 129
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGI-EEMFLELSQRMLEK--------AQEFDLA 186
RT + E Q + + M + + E +LE S EK A +
Sbjct: 130 RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189
Query: 187 KASELSRRGSMRR 199
K S L+++ +R
Sbjct: 190 KLSPLAKKSPVRS 202
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-08
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
++++LG GKT+++ + + I T+ F + + + +WD GQ
Sbjct: 14 EMRILILGLDNAGKTTILYKLKLGEIVT-TIPTI--GFNVETVTYKNVKFT--VWDVGGQ 68
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKI 130
E L Y+ ++ + V D D D E+ K +EL +L + L I NK
Sbjct: 69 ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAK---EELHALLNEEELADAPLLILANKQ 125
Query: 131 DL 132
DL
Sbjct: 126 DL 127
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEK-----HITTLQASFLNKKLNIAGKRLNLAIWDT 71
++VL+G+ VGK+S+++ V ++F E T+ A +R+ I DT
Sbjct: 4 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-------ERVPTTIVDT 56
Query: 72 --AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGN 128
Q+R + I R +N LVY + + E+++ W+ +++ LG + + + GN
Sbjct: 57 SSRPQDRANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRR-LGVKVPIILVGN 113
Query: 129 KIDL-EKQRTVMQEDA 143
K DL + E+
Sbjct: 114 KSDLRDGSSQAGLEEE 129
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 57 LNIAGKRLN---LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
LNI + L WD GQE +L YY S+G + V D TD + F + K+
Sbjct: 41 LNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKS---AF 97
Query: 114 KKMLGN----DICLTIAGNKIDLEKQ------RTVMQEDAEKYAQSVGAVHFHTSAKMNR 163
+K++ N + L + NK DL + V + + V SA
Sbjct: 98 EKVINNEALEGVPLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQ-PVSALEGE 156
Query: 164 GIEE 167
G+EE
Sbjct: 157 GVEE 160
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 27 GKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86
GKT++V +F+E I T+ + + + +WD GQ RF ++ Y R
Sbjct: 11 GKTTLVNVIASGQFSEDTIPTVGFNMRKVTKG----NVTIKVWDLGGQPRFRSMWERYCR 66
Query: 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLE 133
N V V D D + E KN EL +L I L + GNK DL
Sbjct: 67 GVNAIVYVVDAADREKLEVAKN---ELHDLLEKPSLEGIPLLVLGNKNDLP 114
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K L +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKL---KLGEV-VTTIPTIGFNVE-TVEYKNLKFTMWDVGGQDK 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
L YY+ +NG + V D D + + +EL++ML D L + NK DL
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAR---EELERMLSEDELRDAVLLVFANKQDL 130
Query: 133 EKQRTVMQ 140
+ +
Sbjct: 131 PNAMSTTE 138
|
Length = 182 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 27/177 (15%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V LG GKT+++ +D+ + H+ TL + +++L I + +D G E+
Sbjct: 21 KIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPT--SEELTIGN--VKFTTFDLGGHEQ 75
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ Y+ +G V + D D + F++ K +EL +L ++ + + I GNKID
Sbjct: 76 ARRVWKDYFPEVDGIVFLVDAADPERFQESK---EELDSLLNDEELANVPILILGNKIDK 132
Query: 133 ------EKQRTVM-----QEDAEKYAQSVGAVH----FHTSAKMNRGIEEMFLELSQ 174
E+ R + + V + F S +G E F LSQ
Sbjct: 133 PGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLSQ 189
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
++++LG GKT+++ + K + +TT+ N + + K + +WD GQ++
Sbjct: 11 RILMLGLDAAGKTTILYKL---KLG-QSVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK 65
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +++ + D L + NK DL
Sbjct: 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---QELHRIINDREMRDALLLVFANKQDL 122
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+V+LLG GK++++ + + +TT+ N ++ K L+L +WD GQE+
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAEL----VTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
+ Y ++G V V D +DE ++ + KELK +L N + + + NK DL
Sbjct: 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQ---KELKHILKNEHIKGVPVVLLANKQDL 113
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 15 RILMVGLDAAGKTTILYKL---KLGES-VTTIPTIGFNVE-TVTYKNISFTVWDVGGQDK 69
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + G + V D D D ++ + +EL +ML D + + NK DL
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR---EELHRMLNEDELRDAVILVFANKQDL 126
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
K ++ +WD GQ++ L Y++ + G + V D D + + + EL++ML D
Sbjct: 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE---ELQRMLNEDE 98
Query: 121 ---ICLTIAGNKIDL 132
L + NK DL
Sbjct: 99 LRDAVLLVFANKQDL 113
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KV+++G GKT+++ Y +F + + + I K + +WD GQE
Sbjct: 16 YKVIIVGLDNAGKTTIL--Y---QFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQE 70
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKID 131
+ YY ++ +LV D TD + K +EL KML + L + NK D
Sbjct: 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTK---EELYKMLAHEDLRKAVLLVLANKQD 127
Query: 132 LE 133
L+
Sbjct: 128 LK 129
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L Y++ + G + V D D D + ++ EL +ML D L + NK DL
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDL 130
|
Length = 181 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+VV LG GKT+++ + +D+F + I T+ + + K L IWD G+ +
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVET----VEYKNLKFTIWDVGGKHK 55
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN----DICLTIAGNKIDL 132
L YY + V V D + D + + EL K+L D L I NK D+
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHS---ELAKLLTEKELRDALLLIFANKQDV 112
Query: 133 E 133
Sbjct: 113 A 113
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 3e-04
Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 44/192 (22%)
Query: 16 FKVVLLGEGCVGKTSVVL-----RYVEDK-FNEKHITTL---------QASFLNKKLNIA 60
K V++G+ VGKT ++ + + H+ T+ Q + +
Sbjct: 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62
Query: 61 GKRLNLAIWDTAG---QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKM 116
G ++L +WDT G ++R A G S+ +L + I +S VK W E++
Sbjct: 63 GVSVSLRLWDTFGDHDKDRRFAYG-----RSDVVLLCFSIASPNSLRNVKTMWYPEIRHF 117
Query: 117 LGNDICLTIAGNKIDL-------------------EKQRTVMQEDAEKYAQSVGAVHFHT 157
+ + + G K+DL + + E A+ +G ++ T
Sbjct: 118 C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYET 176
Query: 158 SAKMNRGIEEMF 169
S G++++F
Sbjct: 177 SVVTQFGVKDVF 188
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDK------------FNEKHIT--TLQASFLNKKLNIAGK 62
+V+++G+ VGK+S+V V+ KHIT + +S + K + + +
Sbjct: 23 RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SER 81
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
+ +WD +G ER+ ++Y NG + V+D++ + ++ W E+
Sbjct: 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132
|
Length = 334 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKKLNIAGKRLNLAIWDTAG 73
++++LG GKT+++ KFN + I+T+ + F K L G +LN IWD G
Sbjct: 15 MRILMLGLDNAGKTTILK-----KFNGEDISTISPTLGFNIKTLEYNGYKLN--IWDVGG 67
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNK 129
Q+ + Y+ ++ + V D +D E K EL+K+L + L I NK
Sbjct: 68 QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKR---ELQKLLVEERLAGATLLIFANK 124
Query: 130 IDL 132
DL
Sbjct: 125 QDL 127
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML------ 117
L+ +D +GQ ++ L YY+ G + V D +D K+ EL+ +L
Sbjct: 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKD---ELELLLNHPDIK 101
Query: 118 GNDICLTIAGNKIDLEKQRTVM 139
I + NK+DL T +
Sbjct: 102 HRRIPILFYANKMDLPDALTAV 123
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 7e-04
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 22/136 (16%)
Query: 17 KVVLLGEGCVGKTSVV------------LRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
K+V++G GKT+ V K TT+ F + +
Sbjct: 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS---IELDEDT 68
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVK--NWVKELKKMLGNDIC 122
+ ++ T GQERF + I R + GA+++ D + +F + +++ I
Sbjct: 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-----IP 123
Query: 123 LTIAGNKIDLEKQRTV 138
+ +A NK DL
Sbjct: 124 VVVAINKQDLFDALPP 139
|
Length = 187 |
| >gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK--QRTVMQED 142
A LVYD +D +SF V + MLG CL +A K DL++ QR +Q D
Sbjct: 81 ACLVYDSSDPNSFSYCAE-VYKKYFMLGEIPCLFVAA-KADLDEQQQRAEVQPD 132
|
Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| KOG0084|consensus | 205 | 100.0 | ||
| KOG0092|consensus | 200 | 100.0 | ||
| KOG0087|consensus | 222 | 100.0 | ||
| KOG0080|consensus | 209 | 100.0 | ||
| KOG0094|consensus | 221 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| KOG0078|consensus | 207 | 100.0 | ||
| KOG0088|consensus | 218 | 100.0 | ||
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| KOG0394|consensus | 210 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| KOG0079|consensus | 198 | 100.0 | ||
| KOG0091|consensus | 213 | 100.0 | ||
| KOG0086|consensus | 214 | 100.0 | ||
| PLN03108 | 210 | Rab family protein; Provisional | 100.0 | |
| KOG0095|consensus | 213 | 100.0 | ||
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| KOG0093|consensus | 193 | 100.0 | ||
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| KOG0097|consensus | 215 | 100.0 | ||
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| KOG0081|consensus | 219 | 100.0 | ||
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 100.0 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 100.0 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 100.0 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 100.0 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.98 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.98 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.98 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.98 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.98 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.98 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| KOG0083|consensus | 192 | 99.97 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.97 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.97 | |
| KOG0395|consensus | 196 | 99.97 | ||
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.96 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.96 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.96 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.96 | |
| KOG0393|consensus | 198 | 99.96 | ||
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.96 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.96 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.96 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.96 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| KOG4252|consensus | 246 | 99.95 | ||
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.95 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.95 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.95 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.95 | |
| PTZ00099 | 176 | rab6; Provisional | 99.95 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.94 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.94 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.94 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.94 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.94 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.94 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.93 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.93 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.93 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.92 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| KOG0073|consensus | 185 | 99.92 | ||
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.92 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.92 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.92 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.91 | |
| KOG0070|consensus | 181 | 99.91 | ||
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.9 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.9 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.9 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.89 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.89 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.89 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.89 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.89 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.89 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.89 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.89 | |
| KOG1673|consensus | 205 | 99.88 | ||
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.88 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.88 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.88 | |
| KOG0075|consensus | 186 | 99.88 | ||
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.87 | |
| KOG3883|consensus | 198 | 99.87 | ||
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.87 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.87 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.87 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.87 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.87 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.86 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.86 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.86 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.86 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.86 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.86 | |
| KOG0071|consensus | 180 | 99.85 | ||
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.85 | |
| KOG4423|consensus | 229 | 99.85 | ||
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.85 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.85 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.84 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.84 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.84 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.84 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.84 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.84 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.84 | |
| KOG0096|consensus | 216 | 99.83 | ||
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.83 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.82 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.82 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.82 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.82 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.81 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.8 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.8 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.8 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.8 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.79 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.79 | |
| KOG0076|consensus | 197 | 99.79 | ||
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.78 | |
| KOG0072|consensus | 182 | 99.78 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.78 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.78 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.78 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.77 | |
| KOG0074|consensus | 185 | 99.77 | ||
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.77 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.76 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.76 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.76 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.76 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.76 | |
| KOG1423|consensus | 379 | 99.75 | ||
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.75 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.75 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.74 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.74 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.73 | |
| KOG1707|consensus | 625 | 99.73 | ||
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.73 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.73 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.72 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.72 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.71 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.7 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.7 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.69 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.68 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.68 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.68 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.68 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.67 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.67 | |
| KOG1489|consensus | 366 | 99.66 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.66 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.65 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.64 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.64 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.64 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.64 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.64 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.63 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.63 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.63 | |
| KOG0462|consensus | 650 | 99.63 | ||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.62 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.62 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.62 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.61 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.6 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.6 | |
| KOG1191|consensus | 531 | 99.58 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.57 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.56 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.56 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.56 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.56 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.56 | |
| KOG1145|consensus | 683 | 99.56 | ||
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.55 | |
| KOG0077|consensus | 193 | 99.55 | ||
| KOG1490|consensus | 620 | 99.55 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.53 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.52 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.51 | |
| KOG3905|consensus | 473 | 99.5 | ||
| PRK12740 | 668 | elongation factor G; Reviewed | 99.49 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.47 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.46 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.45 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.45 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.44 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.44 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.43 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.42 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.41 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.4 | |
| KOG1707|consensus | 625 | 99.39 | ||
| KOG0090|consensus | 238 | 99.39 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.38 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.37 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.37 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.36 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.35 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.34 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.34 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.32 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.32 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.31 | |
| PRK13768 | 253 | GTPase; Provisional | 99.31 | |
| KOG0458|consensus | 603 | 99.26 | ||
| KOG1144|consensus | 1064 | 99.26 | ||
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.26 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.25 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.23 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.23 | |
| KOG3887|consensus | 347 | 99.22 | ||
| KOG3886|consensus | 295 | 99.22 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.22 | |
| KOG0082|consensus | 354 | 99.21 | ||
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.18 | |
| KOG0461|consensus | 522 | 99.17 | ||
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.17 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.17 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.17 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.17 | |
| KOG0705|consensus | 749 | 99.16 | ||
| KOG1532|consensus | 366 | 99.15 | ||
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.15 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.14 | |
| KOG0468|consensus | 971 | 99.13 | ||
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.13 | |
| KOG0410|consensus | 410 | 99.1 | ||
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.09 | |
| KOG1486|consensus | 364 | 99.08 | ||
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.07 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.06 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.05 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.03 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.98 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.95 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.93 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.9 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.88 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.88 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.87 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.81 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.81 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.81 | |
| KOG1547|consensus | 336 | 98.8 | ||
| KOG2655|consensus | 366 | 98.79 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.75 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.74 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.73 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.71 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.66 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.62 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.61 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.59 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.58 | |
| KOG0460|consensus | 449 | 98.58 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.56 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.55 | |
| KOG2486|consensus | 320 | 98.54 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.54 | |
| KOG0467|consensus | 887 | 98.52 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.49 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.49 | |
| KOG1954|consensus | 532 | 98.47 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.47 | |
| KOG1143|consensus | 591 | 98.45 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.44 | |
| KOG0448|consensus | 749 | 98.44 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.42 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.41 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.4 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.38 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.38 | |
| KOG0464|consensus | 753 | 98.36 | ||
| KOG0447|consensus | 980 | 98.36 | ||
| KOG0099|consensus | 379 | 98.35 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.3 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.29 | |
| KOG1491|consensus | 391 | 98.28 | ||
| KOG0085|consensus | 359 | 98.28 | ||
| KOG4273|consensus | 418 | 98.26 | ||
| KOG0463|consensus | 641 | 98.25 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.24 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.23 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.21 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.15 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.15 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.14 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.11 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.1 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.1 | |
| KOG1424|consensus | 562 | 98.1 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.09 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.08 | |
| KOG0465|consensus | 721 | 98.07 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.07 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.07 | |
| KOG1487|consensus | 358 | 98.07 | ||
| PRK13695 | 174 | putative NTPase; Provisional | 98.06 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.03 | |
| KOG0466|consensus | 466 | 98.0 | ||
| KOG0459|consensus | 501 | 97.99 | ||
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.98 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.94 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.9 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.83 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.83 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.78 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.77 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.75 | |
| KOG2484|consensus | 435 | 97.75 | ||
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.75 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.74 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.64 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.63 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.6 | |
| KOG2485|consensus | 335 | 97.6 | ||
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.58 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.53 | |
| KOG3859|consensus | 406 | 97.5 | ||
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.45 | |
| KOG0469|consensus | 842 | 97.45 | ||
| KOG2423|consensus | 572 | 97.44 | ||
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.43 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.43 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.4 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.4 | |
| PF11111 | 176 | CENP-M: Centromere protein M (CENP-M); InterPro: I | 97.38 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.37 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.34 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.28 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.28 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.27 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.26 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.25 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.25 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.23 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.22 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.21 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.18 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.18 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.17 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.14 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.1 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.08 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 97.05 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.03 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.01 | |
| PRK10646 | 153 | ADP-binding protein; Provisional | 97.01 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 96.98 | |
| COG0802 | 149 | Predicted ATPase or kinase [General function predi | 96.96 | |
| KOG1534|consensus | 273 | 96.95 | ||
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.91 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.91 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.91 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.87 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 96.87 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.86 | |
| KOG0780|consensus | 483 | 96.86 | ||
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.86 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.85 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 96.84 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.84 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.82 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.81 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.81 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.79 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 96.78 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.78 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.78 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.78 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.76 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.76 | |
| KOG3929|consensus | 363 | 96.75 | ||
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.74 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.72 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.72 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 96.71 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.69 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.68 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 96.68 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.67 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.67 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 96.66 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 96.65 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.65 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.64 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.63 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.62 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.62 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.61 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.58 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.57 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.57 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.57 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 96.56 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 96.54 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 96.53 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 96.53 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 96.53 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.53 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.53 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.51 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 96.5 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 96.5 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 96.49 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 96.49 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 96.49 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 96.49 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 96.48 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 96.48 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 96.48 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 96.48 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=257.15 Aligned_cols=174 Identities=37% Similarity=0.717 Sum_probs=167.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|+|||+|+.||....|.+.+..|+|.++..+.+.++++.++++||||+||++|++....||++||
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~ 168 (223)
++|+|||+++.+||+.+..|+.+++++...++|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.|+.++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKAQEF 183 (223)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (223)
|..|...+.++....
T Consensus 164 F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 164 FLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHhcccC
Confidence 999999998876554
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=246.33 Aligned_cols=173 Identities=46% Similarity=0.794 Sum_probs=165.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
..++||+|+|..++|||||+.|+..+.|.+...+|+|..|....+.+++..+++.||||+|+++|+++.+.||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46899999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||+++.+||..++.|+.++.+..++++.+.++|||.||.+.+++..++++.++...++.|+++||+++.|+.++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 173 SQRMLEKAQEFDL 185 (223)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (223)
.+.+.....+...
T Consensus 163 a~~lp~~~~~~~~ 175 (200)
T KOG0092|consen 163 AEKLPCSDPQERQ 175 (200)
T ss_pred HHhccCccccccc
Confidence 9999877655443
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=240.26 Aligned_cols=181 Identities=34% Similarity=0.640 Sum_probs=173.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.++.+||+++|++++|||-|+.+|..+.|..+..+|+|.++..+.+.++++.++.+||||+|+++|+.....||+.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||++...+|+.+..|+.+++.+...++++++||||+||...+.+..++.+.++...+..|+++||.+..|+.++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy8722 170 LELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~ 190 (223)
..++..++....+.......+
T Consensus 169 ~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 169 ERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 999999999988876666544
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=231.44 Aligned_cols=171 Identities=43% Similarity=0.719 Sum_probs=162.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+...+||++||.+|+|||||+.+|+.+.|.+....|+|.+|..+.+.+++..+++.||||+|+++|+.+.+.||+.|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 55677899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++.+++|..+..|++++..... +++..++|+||+|.+.++.+..++...|+.++++-|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999998764 66778999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|+.+++++++-.
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999998753
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=238.38 Aligned_cols=171 Identities=36% Similarity=0.657 Sum_probs=161.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+-+.+||+++|+.++||||||+++..+.|...|.+|+|.+|...++.+.++++.+++|||+||++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+|+|||+++..||++..+|++.+....+. ++.+++||||.||.+.+++..++.+..++++++.|+++||+.|.||.++|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999998876 48889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQ 181 (223)
Q Consensus 170 ~~i~~~~~~~~~ 181 (223)
..|..++.....
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 998877766544
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=236.39 Aligned_cols=177 Identities=34% Similarity=0.661 Sum_probs=168.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.+|++++|+.|||||+|+.+|..+.|.+.+..|+|.++..+.+.++++.+++++|||+|++.|.+....||+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||+..+++|..+..|+..++++..+++.+++++||+||+..+.+..++.++|+.++|+.|+++||++++|+.|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy8722 172 LSQRMLEKAQEFDLAKA 188 (223)
Q Consensus 172 i~~~~~~~~~~~~~~~~ 188 (223)
+...+++.-++.-....
T Consensus 163 ta~~Iy~~~q~g~~~~~ 179 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFDDI 179 (216)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999998777544443
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=239.79 Aligned_cols=176 Identities=43% Similarity=0.770 Sum_probs=169.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.++.+.+||+++|+++||||+|+.+|..+.|...+..|+|.++..+.+..++..+.+++|||+|+++|.....+|++.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||+++..||+++..|+..+..+..+++|.++||||+|++..+++..+..+++|.++|++|+|+||++|.||+++|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQEFDL 185 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~ 185 (223)
-.+.+.++.+....+.
T Consensus 167 ~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 167 LSLARDILQKLEDAEL 182 (207)
T ss_pred HHHHHHHHhhcchhhh
Confidence 9999999986655533
|
|
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=223.78 Aligned_cols=209 Identities=56% Similarity=0.903 Sum_probs=182.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.....|||+++|..-+|||||+-++..+.|...+..|....|..+.+.+.+....+.||||+|+++|+.+.+.||+..++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++|++||+.++.|..+++...+..+-+++|+||+||+.++.+..++++.++...|+.|+++||+++.||.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccceeeecCCCCCCCCCCCCcccc
Q psy8722 171 ELSQRMLEKAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 221 (223)
.+...+++...+.+....+-... ++.-....-..|.+.|..++. ++||.
T Consensus 169 ~Lt~~MiE~~s~~qr~~~~~s~q-pp~t~r~~~~iD~e~~a~~sg-~~CC~ 217 (218)
T KOG0088|consen 169 SLTAKMIEHSSQRQRTRSPLSTQ-PPSTNRSIRLIDNEAEAERSG-KRCCR 217 (218)
T ss_pred HHHHHHHHHhhhcccccCCcCCC-CCCcccchhccCCCccccccc-CCccC
Confidence 99999999877665554333333 333333333444443444443 34886
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=237.18 Aligned_cols=175 Identities=34% Similarity=0.642 Sum_probs=160.0
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
...+.++.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||++|++.+...+..++++
T Consensus 5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 34456688999999999999999999999888888888999999988888899988999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
++++|+|||++++.+|+.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887777899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEKAQE 182 (223)
Q Consensus 168 ~~~~i~~~~~~~~~~ 182 (223)
+|++++..+.+....
T Consensus 165 lf~~l~~~i~~~~~~ 179 (216)
T PLN03110 165 AFQTILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999886544
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=222.38 Aligned_cols=172 Identities=38% Similarity=0.669 Sum_probs=159.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
....-+||+++|++|+|||||++++++..|..++..|+|.++..+.+.++++.+.++||||+|+++|.++...+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccc--cccCCHHHHHHHHHHhC-CcEEEecCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEK--QRTVMQEDAEKYAQSVG-AVHFHTSAKMNR 163 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (223)
+++|||++++.||+.+..|..++-.... ...|++|+|||+|+.+ .++++...++++|...| +||||+||+...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887664 4578999999999965 38899999999998876 699999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~ 182 (223)
||+++|..+...++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999998877543
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=231.61 Aligned_cols=169 Identities=30% Similarity=0.516 Sum_probs=155.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998888888888888888878888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+|+.+..|+..+.... ++.|++||+||.|+...+.+..++++++++.++++|+++||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 57999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 172 LSQRMLEKAQ 181 (223)
Q Consensus 172 i~~~~~~~~~ 181 (223)
|++.+..+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998875543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=230.80 Aligned_cols=164 Identities=38% Similarity=0.724 Sum_probs=152.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+.|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899999998888889998999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.||+.+..|+..+......++|+++|+||+|+...+++..++..++++.+ ++.|+++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999988776678999999999999888888888999999875 789999999999999999999999
Q ss_pred HHHHH
Q psy8722 175 RMLEK 179 (223)
Q Consensus 175 ~~~~~ 179 (223)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=232.08 Aligned_cols=208 Identities=35% Similarity=0.636 Sum_probs=180.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+++||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999988888888889988888777776 466789999999999999988899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.+|+.+..|+..+..... ...|+++|+||.|+...+.+..++..++++.++++++++||+++.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999877654 45788999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhc-cccccceeeecCCCCCCCCCCCCcccc
Q psy8722 172 LSQRMLEKAQEFDLAKASELSRR-GSMRRNVVVVEDEDLPTSSSTKSGCCL 221 (223)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~cc~ 221 (223)
|++.+.+.....+......|.+. ...+.+..-++.+..|+.+++...|||
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 99999888766654554445333 456666777777888999999888986
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=229.46 Aligned_cols=168 Identities=33% Similarity=0.558 Sum_probs=151.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|||||||+++|....+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 689999999999999999999988888888999988877777777 7789999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 169 (223)
||++++.+|+.+..|+..+.... ..++|+++|+||.|+...+.+..+++.+++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999999887642 2568999999999997667778899999999999 589999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQEF 183 (223)
Q Consensus 170 ~~i~~~~~~~~~~~ 183 (223)
++|++.+....+..
T Consensus 161 ~~l~~~l~~~~~~~ 174 (201)
T cd04107 161 RFLVKNILANDKNL 174 (201)
T ss_pred HHHHHHHHHhchhh
Confidence 99999987664443
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=213.97 Aligned_cols=169 Identities=38% Similarity=0.693 Sum_probs=161.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+-++.+++|++|+|||+|+.+|..+.|..+|..|+|.++..+++.++|..++++|||++|++.|+.+...|++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||+++.+||.++.+|+++++..+. .+|-++||||.|..+.+.+..+++..++...|+.+|++|++++.|+...|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999999875 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
-|.++++...
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999988776
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=215.31 Aligned_cols=184 Identities=39% Similarity=0.636 Sum_probs=167.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+++++++||++-+|||+|++.++.+.+.+-..||.|.++..+.+.+ +|..+++++|||+|+++|++....|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 47899999999999999999999999999999999999998887766 57778999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CC-CeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-ND-ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|||+++..||+.+..|+.+...+.+ +. +-+++||+|+||...++++.+++++++..+|+.|+|+|+++|.|++++|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999999887765 44 4468889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccc
Q psy8722 170 LELSQRMLEKAQEFDLAKASELSRRGS 196 (223)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
..+.+.+.....+.+.+....|-...+
T Consensus 166 ~mlaqeIf~~i~qGeik~edgw~gvKS 192 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQGEIKLEDGWGGVKS 192 (213)
T ss_pred HHHHHHHHHHHhcCceeeeeccccccc
Confidence 999999999988877776665655444
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=211.68 Aligned_cols=180 Identities=34% Similarity=0.638 Sum_probs=170.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+++-+|++++|+.|+|||+|+++|..+.+......|+|.+|..+.+.+.++.++++||||+|+++|++....|++.|.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++++++|+.+..|+...+....+++-+++++||.||+..+++...++.+|+++..+.++++|+.+|+|+.++|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy8722 171 ELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~ 190 (223)
.....++.+-+..+.++...
T Consensus 165 ~c~~tIl~kIE~GElDPer~ 184 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERM 184 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHc
Confidence 99999988877766655433
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=223.77 Aligned_cols=169 Identities=33% Similarity=0.681 Sum_probs=154.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988888888889998888888888888889999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.++..+..|+..+.......+|+++++||.|+...+.+..++..++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766779999999999998877888899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 173 SQRMLEKAQ 181 (223)
Q Consensus 173 ~~~~~~~~~ 181 (223)
++.+++...
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999876543
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=209.03 Aligned_cols=176 Identities=35% Similarity=0.663 Sum_probs=166.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+++.-+||+++|..|+|||+|+++|+.+-|++....|+|.++..+++.+++.+++++||||+|+++|++....|++.||+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++...+|+-+.+|+.++....+..+--|+|+||+|+.+.++++.+..++|+......|+++||++-+|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8722 171 ELSQRMLEKAQEFDLA 186 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~ 186 (223)
.+...+.......+..
T Consensus 163 ~~a~rli~~ar~~d~v 178 (213)
T KOG0095|consen 163 DLACRLISEARQNDLV 178 (213)
T ss_pred HHHHHHHHHHHhccch
Confidence 9999888776665543
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=218.74 Aligned_cols=164 Identities=23% Similarity=0.494 Sum_probs=148.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+..+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 467899999999999999999999999999888899887664 5677889899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
|+|||++++.||+.+ ..|+..+.... ++.|++||+||+|+.. .+.+..++++++++.+++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999998865 5689999999999854 346889999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHHHH
Q psy8722 158 SAKMNRG-IEEMFLELSQRML 177 (223)
Q Consensus 158 Sa~~~~~-i~~~~~~i~~~~~ 177 (223)
||+++.| |+++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=204.90 Aligned_cols=170 Identities=36% Similarity=0.683 Sum_probs=161.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+-+|++++|+..+|||||+.++.+..|...+..|.|.++..+++.-....+.+++|||.|++.|+.....++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56779999999999999999999999999999999999999998887888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
++||+.+.+||..++.|...+....-.+.|+|+++||+|+++++.++.+....++..+|+.|||+||+.+.|+..+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 173 SQRMLEKAQE 182 (223)
Q Consensus 173 ~~~~~~~~~~ 182 (223)
...+-..+.+
T Consensus 179 v~~Ic~kmse 188 (193)
T KOG0093|consen 179 VDIICDKMSE 188 (193)
T ss_pred HHHHHHHhhh
Confidence 9888776554
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=215.32 Aligned_cols=164 Identities=34% Similarity=0.669 Sum_probs=151.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999888888888888888888888888889999999999999999899999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+|+.+..|+..+.....++.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|+.++|.+++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776677999999999999888888889999999999999999999999999999999998
Q ss_pred HHHH
Q psy8722 175 RMLE 178 (223)
Q Consensus 175 ~~~~ 178 (223)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=219.85 Aligned_cols=190 Identities=34% Similarity=0.640 Sum_probs=160.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999877754 5677888888777788888889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+++.+..|+..+......++|+++++||.|+...+.+..++...++..++.+++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999776777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccceeeecCCCCCCCCCCCCccc
Q psy8722 175 RMLEKAQEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220 (223)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 220 (223)
.+.....++ +....-.+.. ..++.++++.||
T Consensus 161 ~~~~~~~~~------------~~~~~~~~~~---~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQ------------PDEGKFKISD---YVTKQKKISRCC 191 (191)
T ss_pred HHHHhcccc------------CCCCcEEecc---ccCcccccCCCC
Confidence 887653222 1111112222 334778899999
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=215.34 Aligned_cols=160 Identities=31% Similarity=0.621 Sum_probs=144.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||+|+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988899998766 445678888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccccc----------cCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 96 DITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQR----------TVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
|++++.||+.+ ..|+..+.... ++.|++|||||+|+.+.+ .+..+++.+++...+. .|+|+||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999998765 479999999999996543 4788999999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
||+++|+.+++.++
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=217.63 Aligned_cols=170 Identities=39% Similarity=0.717 Sum_probs=153.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+...+..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45689999999999999999999999888888889998888778888888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.+|+.+..|+..+.... +..|+++|+||+|+.....+..++..+++...+.+++++||+++.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999987754 46899999999999777677778888899889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|...++.....
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99999866443
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=213.49 Aligned_cols=166 Identities=41% Similarity=0.766 Sum_probs=152.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999988999998887778888888899999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+|..+..|+..+......+.|+++++||.|+.+.+.+..++...++..++.+++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998777777888889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
.+++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=219.80 Aligned_cols=164 Identities=36% Similarity=0.617 Sum_probs=142.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|.+|+|||||+++|..+.+.. +.+|.+.++....+ ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999888864 56787776644332 4578999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-------------------cccCCHHHHHHHHHHhC-----
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-------------------QRTVMQEDAEKYAQSVG----- 151 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 151 (223)
|++++.+|+.+..|+..+......+.|+++|+||+|+.. .+.+..+++++++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988877766556789999999999965 57788899999999876
Q ss_pred ---------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 152 ---------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 152 ---------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
++|+++||++|.||+++|..+++.+++...+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999998887655443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=215.01 Aligned_cols=161 Identities=24% Similarity=0.492 Sum_probs=144.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.+|||+|++.+......+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999888899887764 5677889999999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++.||+.+ ..|+..+.... ++.|+++|+||.|+.. .+.+..++++++++.+++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999998765 4689999999999854 245788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q psy8722 161 MNRG-IEEMFLELSQRML 177 (223)
Q Consensus 161 ~~~~-i~~~~~~i~~~~~ 177 (223)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=221.69 Aligned_cols=164 Identities=32% Similarity=0.577 Sum_probs=149.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|....+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999998888887754 568999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
||++++++|+.+..|+..+..... .+.|+++|+||.|+...+.+..++..+++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 35689999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 172 LSQRMLEK 179 (223)
Q Consensus 172 i~~~~~~~ 179 (223)
+...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998765
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=215.10 Aligned_cols=165 Identities=38% Similarity=0.662 Sum_probs=151.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888778889988887778888888899999999999999889999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|..+..|+..+........|+++++||.|+.....+..++...++...+++++++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998777777888888988889999999999999999999999999
Q ss_pred HHHHH
Q psy8722 176 MLEKA 180 (223)
Q Consensus 176 ~~~~~ 180 (223)
+..+.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87653
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=219.78 Aligned_cols=166 Identities=26% Similarity=0.453 Sum_probs=149.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|+.|||||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+...+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 56889999999999999999999999999999999987774 45778899999999999999999999999999999999
Q ss_pred EEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.+|+. +..|+..+.... ++.|+++|+||+|+.. .+.+..++++++++.+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 478999998765 4689999999999864 367888999999999999 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHH
Q psy8722 159 AKMNR-GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 159 a~~~~-~i~~~~~~i~~~~~~~~ 180 (223)
|++|. |++++|..++..+++..
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhc
Confidence 99998 89999999999887643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=210.19 Aligned_cols=160 Identities=36% Similarity=0.682 Sum_probs=148.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899998887788888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|+.+..|+..+......++|+++|+||.|+...+.+..++...+++.++.+|+++||++|.|++++|.+|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987766679999999999998888888899999999999999999999999999999999865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=212.58 Aligned_cols=164 Identities=32% Similarity=0.582 Sum_probs=148.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888887655 44567788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..++++.++++|+++||+++.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999998887754 35799999999999987788888899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887764
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=212.79 Aligned_cols=167 Identities=38% Similarity=0.658 Sum_probs=150.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA----------GKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
++.+||+++|++|+|||||++++....+...+.++.+.++....+.+. +..+.+.+||++|++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999998888999888876666554 4568999999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+++++|++++|||++++.+|..+..|+..+.... .++.|+++|+||+|+...+.+..++..+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987754 35689999999999987778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (223)
+.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999888654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=208.61 Aligned_cols=161 Identities=42% Similarity=0.754 Sum_probs=153.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|+.|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++.|++.+..|+..+......+.|++|++||.|+...+.+..+++++++..++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876799999999999988889999999999999999999999999999999999999987
Q ss_pred H
Q psy8722 177 L 177 (223)
Q Consensus 177 ~ 177 (223)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=209.77 Aligned_cols=163 Identities=36% Similarity=0.732 Sum_probs=150.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999998888888888888888888888888889999999999999988889999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||+++++++..+..|+..+.....++.|+++++||.|+.....+..++...++..++++++++||++|.|++++|..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998876567899999999999877778888999999999999999999999999999999998
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=213.33 Aligned_cols=167 Identities=29% Similarity=0.527 Sum_probs=148.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||++++....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999998888878788887766 456678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||.|+...+.+..++...++..++.+++++||+++.|+.++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999999887654 357899999999999777777778888888888999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
|++.+.+..
T Consensus 162 l~~~l~~~~ 170 (189)
T PTZ00369 162 LVREIRKYL 170 (189)
T ss_pred HHHHHHHHh
Confidence 999887553
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=213.92 Aligned_cols=163 Identities=26% Similarity=0.525 Sum_probs=144.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|+.|||||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999998888899887654 445678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEecC
Q psy8722 94 VYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHTSA 159 (223)
Q Consensus 94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (223)
|||++++.||+.+. .|+..+.... +++|+++|+||.|+.+. +.+..++..+++..++ .+|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5988887654 47999999999999654 2356788899999998 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (223)
++|.|+.++|+++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=208.30 Aligned_cols=162 Identities=36% Similarity=0.664 Sum_probs=147.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888888877777777888899999999999999988999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+........|+++|+||+|+...+.+..++..+++..++.+++++||+++.|+.++|+++...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777788888999999999999999999999999999886
Q ss_pred HH
Q psy8722 176 ML 177 (223)
Q Consensus 176 ~~ 177 (223)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=212.99 Aligned_cols=165 Identities=32% Similarity=0.537 Sum_probs=145.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999998888877778877655 3455678888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
+++..+|+.+..|+..+..... .+.|+++|+||+|+...+.+..++..+++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998876543 5689999999999977777788888889998999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 174 QRMLEKAQE 182 (223)
Q Consensus 174 ~~~~~~~~~ 182 (223)
+.+..+...
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 887655444
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=195.75 Aligned_cols=177 Identities=33% Similarity=0.648 Sum_probs=166.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
++.+-+|.+++|+-|+|||+|++.|+..+|-..-..++|.++..+.+.+.+.++++++|||+|+++|+.....|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 35677899999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||+..+.++..+..|+...+...+++..+++++||.|++..+.+..+++++|+.++|..|+++|+++|.++.+.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8722 171 ELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~ 187 (223)
....++++.-++...+.
T Consensus 167 e~akkiyqniqdgsldl 183 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDL 183 (215)
T ss_pred HHHHHHHHhhhcCcccc
Confidence 99998888777655444
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=206.19 Aligned_cols=166 Identities=35% Similarity=0.703 Sum_probs=152.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998888888888888888888888888889999999999999888888999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...++.++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999997777778888999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=206.68 Aligned_cols=162 Identities=33% Similarity=0.627 Sum_probs=148.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999999988888888898999999999999998888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987654 4689999999999975566678888888888899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=209.23 Aligned_cols=162 Identities=27% Similarity=0.548 Sum_probs=143.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999999988888889998899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-----cccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-----QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+|+.+..|+..+........| ++|+||+|+.. ......++..+++...+.+++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555567 57899999842 111224567788888899999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
++.+.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988865
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=205.36 Aligned_cols=163 Identities=39% Similarity=0.712 Sum_probs=150.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999888888888999988888888888888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||++++.++..+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766799999999999987777788888999988899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 775
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=213.70 Aligned_cols=165 Identities=21% Similarity=0.475 Sum_probs=144.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+|+|++|+|||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999899999987764 4667888899999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++++|+.+. .|...+.... ++.|++||+||+|+... .++..++...++++.++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 5877765543 57999999999999542 23677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHH
Q psy8722 161 MNRG-IEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 161 ~~~~-i~~~~~~i~~~~~~~~~ 181 (223)
++.+ |.++|..++.+.+.+..
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 9985 99999999998776544
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=207.37 Aligned_cols=160 Identities=28% Similarity=0.535 Sum_probs=141.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888899887764 3466788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (223)
||++++.+|+.+. .|+..+.... +++|+++|+||.|+... +.+..+++.+++...+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5988887654 46899999999998543 5667788888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRM 176 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (223)
+|.|+.++|+.++.+.
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=209.53 Aligned_cols=172 Identities=36% Similarity=0.664 Sum_probs=148.9
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
+..+....+||+|+|++|+|||||+++|....+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..++++
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 4445677899999999999999999999977764 557788888877777788888899999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKN-WVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
+|++|+|||++++.+|..+.. |...+.... ..+.|+++|+||.|+...+.+..++...++...+++|+++||+++.|+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999976 766665443 245799999999999777777778888889889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKA 180 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (223)
+++|++|...+....
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 166 EQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999997653
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=204.12 Aligned_cols=162 Identities=44% Similarity=0.750 Sum_probs=147.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57999999999999999999999888888778888888877788888888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887667899999999999987777778888899988886 68999999999999999999
Q ss_pred HHH
Q psy8722 173 SQR 175 (223)
Q Consensus 173 ~~~ 175 (223)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=203.31 Aligned_cols=160 Identities=39% Similarity=0.709 Sum_probs=148.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888899999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+.....+++|+++++||.|+...+.+..++...++...++.++++||+++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887777789999999999997777778889999999999999999999999999999999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=203.89 Aligned_cols=161 Identities=33% Similarity=0.603 Sum_probs=142.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|||||||++++..+.+...+.+|.+. .....+.+++..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999988887777777763 3455677888888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+++.+..|+..+..... .++|+++++||+|+...+.+..++..+++..++.+++++||+++.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 5789999999999977667777788888888889999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=211.24 Aligned_cols=164 Identities=28% Similarity=0.505 Sum_probs=146.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|.+|+|||||++++..+.+...+.+|.+.++....+..++..+.+.+|||+|++.+...+..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 78899999999999999999999999998888999999888877778888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+|..+..|+..+.... ++.|+++|+||+|+.. +.+..++. +++...+++|+++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998765 5699999999999854 33344444 7778888999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=205.78 Aligned_cols=166 Identities=31% Similarity=0.542 Sum_probs=143.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|++|+|||||+++|..+.+...+.++.+.++... +... +..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888887776443 4444 6778999999999999998888899999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc----ccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ----RTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
||++++.+|+.+. .|+..+.... ++.|+++|+||.|+... +.+..++..+++..++. +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4888776543 56899999999998543 34567888899999998 8999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKAQEF 183 (223)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (223)
|+.+.+.++......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999988765544
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=202.12 Aligned_cols=161 Identities=33% Similarity=0.611 Sum_probs=143.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888777778877665 35677788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||+++..+|+.+..|+..+.... ..+.|+++++||+|+.....+..++..++++.++.+++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36799999999999977766777778888888899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=205.00 Aligned_cols=164 Identities=40% Similarity=0.706 Sum_probs=144.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+|+|++|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888874 5778888888777888899889999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc----ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ----RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
||++++.+++.+..|+..+... .++.|+++|+||.|+... +.+..+++.+++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988765 346899999999998432 34556778888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+....
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=200.68 Aligned_cols=160 Identities=31% Similarity=0.584 Sum_probs=141.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888889888887777777888899999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+..... ++|+++|+||+|+.. +.+. .+..+++...+.+++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988765 799999999999863 3333 34456777778899999999999999999999988
Q ss_pred HHH
Q psy8722 176 MLE 178 (223)
Q Consensus 176 ~~~ 178 (223)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=200.37 Aligned_cols=163 Identities=46% Similarity=0.821 Sum_probs=149.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988888888888888888888888888889999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+.....+++|+++++||+|+...+.+..+.+.+++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776789999999999997767777888888999999999999999999999999999988
Q ss_pred HHH
Q psy8722 176 MLE 178 (223)
Q Consensus 176 ~~~ 178 (223)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=201.04 Aligned_cols=159 Identities=34% Similarity=0.618 Sum_probs=144.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888899888877777776 777899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||+++++++..+..|+..+.... .++|+++|+||.|+.....+..++..+++..++++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987654 4689999999999977777788889999999999999999999999999999987
Q ss_pred HH
Q psy8722 174 QR 175 (223)
Q Consensus 174 ~~ 175 (223)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=201.02 Aligned_cols=162 Identities=31% Similarity=0.581 Sum_probs=143.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999999887888888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++.++..+..|+..+.+.. ....|+++|+||.|+..... ...++..+++..++.+++++||+++.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 34578999999999855433 345667788888889999999999999999999999
Q ss_pred HHHHH
Q psy8722 174 QRMLE 178 (223)
Q Consensus 174 ~~~~~ 178 (223)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=201.12 Aligned_cols=163 Identities=38% Similarity=0.652 Sum_probs=146.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+..+||+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999888888888888888777888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
++|||++++.+++.+..|+..+..... .++|+++++||.|+. .+.+..+++.+++..++. +++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999988766542 468999999999986 556678889999988885 79999999999999
Q ss_pred HHHHHHHHH
Q psy8722 167 EMFLELSQR 175 (223)
Q Consensus 167 ~~~~~i~~~ 175 (223)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=199.57 Aligned_cols=174 Identities=34% Similarity=0.603 Sum_probs=159.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA---------GKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~ 80 (223)
-++.+-||.+.+|++|+|||+++.+++.+.|..+...|.|.++..+.+-++ +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356778899999999999999999999999999999999999988877652 35578999999999999999
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
...++++|=+++++||+++..||-++..|+..++.+.- ++.-+++++||.|+++.+.++.+++.+++.++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999987643 55678999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
-+|.|+.+..+.+...++++.++-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887664
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=199.69 Aligned_cols=161 Identities=30% Similarity=0.584 Sum_probs=141.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++..+.+.+.+.++.+ ++....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999998888877777765 44456677788888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.++..+..|+..+..... .++|+++++||+|+...+.+...+...++...+.+++++||+++.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877643 5799999999999976666667778888888889999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=201.02 Aligned_cols=159 Identities=28% Similarity=0.568 Sum_probs=139.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876544 44566788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++.+|+.+. .|+..+.... ++.|+++|+||.|+... +.+..+++.+++..++. +++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 5988887654 47999999999998542 35778899999999985 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQR 175 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~ 175 (223)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=197.85 Aligned_cols=160 Identities=39% Similarity=0.714 Sum_probs=146.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998888888899999988888888888889999999999999888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+|+.+..|+..+....+.+.|+++++||+|+........++...++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999996666677888888888889999999999999999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=197.62 Aligned_cols=160 Identities=26% Similarity=0.540 Sum_probs=140.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998888887778777777777778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+.... ++.|+++++||+|+... ..++...++...+++++++||+++.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 46899999999998432 2344566777778899999999999999999999988
Q ss_pred HHHH
Q psy8722 176 MLEK 179 (223)
Q Consensus 176 ~~~~ 179 (223)
++++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=198.75 Aligned_cols=159 Identities=30% Similarity=0.506 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888877777776554 344556677789999999999999888888899999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|++++.+++.+..|+..+..... +++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999988876543 568999999999997766777788888888889999999999999999999998
Q ss_pred HHH
Q psy8722 173 SQR 175 (223)
Q Consensus 173 ~~~ 175 (223)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=198.81 Aligned_cols=162 Identities=34% Similarity=0.654 Sum_probs=146.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccCCEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH-ALGPIYYRMSNGAVL 93 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 93 (223)
.+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999888888888888888888888888988999999999998876 467888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC---CCCHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEMF 169 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 169 (223)
|||++++.++..+..|+..+.... ..++|+++|+||.|+...+.+..++..+++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999988764 35799999999999988888888888999999999999999999 89999999
Q ss_pred HHHHHHH
Q psy8722 170 LELSQRM 176 (223)
Q Consensus 170 ~~i~~~~ 176 (223)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=197.58 Aligned_cols=161 Identities=35% Similarity=0.626 Sum_probs=141.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888877777666433 456667888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++++++.+..|...+.+... .+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888776543 46899999999999776667778888889889999999999999999999999987
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=196.31 Aligned_cols=162 Identities=46% Similarity=0.854 Sum_probs=148.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++.+..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888877788888888788888899889999999999999888888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+|++++.++..+..|+..+.....+.+|+++++||+|+...+....++...++..++++++++||++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876677999999999998766667788888899999999999999999999999999998
Q ss_pred HH
Q psy8722 175 RM 176 (223)
Q Consensus 175 ~~ 176 (223)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=196.57 Aligned_cols=162 Identities=31% Similarity=0.548 Sum_probs=141.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||++++....+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 468999999999999999999998887777777776544 3445678888899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+.+.. ..+.|+++++||+|+...+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998887753 3578999999999997776677778888888889999999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+..+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=202.23 Aligned_cols=161 Identities=30% Similarity=0.537 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888877664 45567788889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhC-CcEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVG-AVHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (223)
|++++.+|+.+. .|+..+.... ++.|+++|+||+|+...+ .+..++..+++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5998887654 478999999999996543 345667778887777 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (223)
|.|++++|.++++.++.
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988873
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=195.32 Aligned_cols=160 Identities=33% Similarity=0.589 Sum_probs=139.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999998888777777776554 45566788888899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. +.....+..+++...+.+++++||+++.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887764 35789999999999865 44567778888888899999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=201.57 Aligned_cols=165 Identities=26% Similarity=0.335 Sum_probs=139.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 87 (223)
+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998888888888887776667778888899999999997654221 2234789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML---GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNR 163 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (223)
+|++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887764 4679999999999997666666677776654 568899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++++|+.++..++.+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998887553
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=195.45 Aligned_cols=160 Identities=28% Similarity=0.497 Sum_probs=141.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+||+++|++|||||||++++..+ .+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 6778888899888877776664 56789999999999999888899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.....+.......+....+.+++++||+++.|+.++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999988764 468999999999997766667767777778888899999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=200.99 Aligned_cols=156 Identities=28% Similarity=0.536 Sum_probs=140.1
Q ss_pred ECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCH
Q psy8722 21 LGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE 100 (223)
Q Consensus 21 iG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (223)
+|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888888889999998888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 101 DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+|..+..|+..+.+.. +++|+++|+||+|+.. +.+..+. .+++...++.|+++||++|.|+.++|.+|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998865 4799999999999854 3444443 467888899999999999999999999999988764
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=193.21 Aligned_cols=161 Identities=72% Similarity=1.146 Sum_probs=145.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+...+.++.+..+....+...+..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887777777777777777777788889999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.+++.+..|+..+......++|+++++||+|+.....+..++..+++...+.+++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776689999999999998777777788888888899999999999999999999999876
Q ss_pred H
Q psy8722 176 M 176 (223)
Q Consensus 176 ~ 176 (223)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=200.16 Aligned_cols=158 Identities=23% Similarity=0.402 Sum_probs=130.4
Q ss_pred eeEEEEECCCCCcHHHHHH-HHhhCC-----CCCCCccccce-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVL-RYVEDK-----FNEKHITTLQA-SFLNKK--------LNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
.+||+++|+.|||||||+. ++.+.. +...+.||++. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 554433 44566777752 322222 24678889999999999875 3
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc-------------------cccCC
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK-------------------QRTVM 139 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 139 (223)
....+++++|++|+|||++++.||+.+. .|+..+.... ++.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5999887765 4689999999999864 46788
Q ss_pred HHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 140 QEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.++++++++.++++|+||||++|.|++++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=194.23 Aligned_cols=164 Identities=41% Similarity=0.700 Sum_probs=146.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888888888888888888899999999999999888999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+++.+..|...+..... .++|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999999887766543 368999999999997666667788888888887 6899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
+|.+.+++.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988876
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=192.83 Aligned_cols=162 Identities=31% Similarity=0.626 Sum_probs=143.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999998888777777776554 56667788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i 172 (223)
||++++.+++.+..|...+.+.. ..+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999887654 3579999999999997777777788888888888 799999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
+..++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-31 Score=194.84 Aligned_cols=158 Identities=31% Similarity=0.611 Sum_probs=138.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998888777776555 34566788888999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 98 TDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 98 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
+++.+|+.+. .|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5999887754 47999999999998542 23677888899999997 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=192.92 Aligned_cols=160 Identities=31% Similarity=0.546 Sum_probs=137.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-ccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-HALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~ 95 (223)
||+++|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||++.+ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766667665444 455677888889999999998853 445667889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC-CCHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN-RGIEEMFLEL 172 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~i 172 (223)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++...+.+|+++||+++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999999888764 357999999999999777777888888999999999999999999 5999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=190.84 Aligned_cols=165 Identities=38% Similarity=0.698 Sum_probs=147.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|+|||||++++....+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998888777778888888787888888888999999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||+.++.++..+..|+..+......+.|+++++||+|+...+.+..+....+......+++++|+++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999988876667999999999999777777777777787777789999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=190.35 Aligned_cols=153 Identities=21% Similarity=0.379 Sum_probs=130.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|+.|+|||||++++..+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988887665443 4444 45678888888999999999874 34668899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCcc--ccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLE--KQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|++++.||+.+..|+..+..... .++|+++|+||.|+. ..+.+..++.+++++.. ++.|++|||+++.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987754 568999999999985 35677888888898776 489999999999999999999
Q ss_pred HHHH
Q psy8722 172 LSQR 175 (223)
Q Consensus 172 i~~~ 175 (223)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=189.61 Aligned_cols=159 Identities=42% Similarity=0.763 Sum_probs=142.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887777888888887777778888889999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.++..+..|+..+.... ..+.|+++++||+|+. ......++..+++...+++++++|+++|.|+.++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999988765 3678999999999986 3345667888899999999999999999999999999887
Q ss_pred H
Q psy8722 175 R 175 (223)
Q Consensus 175 ~ 175 (223)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=193.26 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=141.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+.+||+++|.+|+|||||+++|..+.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36799999999999999999999998888 78889998888777788888888999999999999988888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.+++.+..|+..+... .++|+++|+||.|+.........+..+++..+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888866432 3689999999999965554444556777888887 479999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=202.71 Aligned_cols=160 Identities=29% Similarity=0.475 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|..+.+...+.+|.+ ++....+.+++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888887777776 555667778888899999999999998888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHH---------cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 96 DITDEDSFEKVKNWVKELKKM---------LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
|++++++|+.+..|+..+... ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224689999999999976667778888877754 4678999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-33 Score=188.16 Aligned_cols=161 Identities=35% Similarity=0.681 Sum_probs=151.0
Q ss_pred EECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (223)
++|++++|||+|+=++..+.|. ....+|.|.++..+.+..++.++++++|||+|+++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888866654 456799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 99 DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 99 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..||++.+.|+.++....+..+.+.+++||+|+..++.+..++.+++++.+++||.++||++|.|++..|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999988876
Q ss_pred HH
Q psy8722 179 KA 180 (223)
Q Consensus 179 ~~ 180 (223)
..
T Consensus 162 ~~ 163 (192)
T KOG0083|consen 162 LK 163 (192)
T ss_pred hc
Confidence 64
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=191.16 Aligned_cols=159 Identities=31% Similarity=0.613 Sum_probs=137.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999998888777777765444 445677888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
|+.++.+|+.+. .|+..+... .++.|+++++||+|+.+. +.+..+++..++..++. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 588888765 567999999999998543 35667888889988886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=190.57 Aligned_cols=157 Identities=27% Similarity=0.514 Sum_probs=136.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++..+.+...+.+|. .+.....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999888888777775 4444556778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
|++++.+|+.+. .|+..+.... ++.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6888887543 4689999999999853 456778889999999998 899999999
Q ss_pred CCCHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQ 174 (223)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (223)
+.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=198.55 Aligned_cols=166 Identities=21% Similarity=0.341 Sum_probs=141.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cCCEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR-MSNGAVL 93 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 93 (223)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877776 56666666567777788888889999999999882 23344566 8999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887754 2578999999999998777778888888888889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 173 SQRMLEKAQEF 183 (223)
Q Consensus 173 ~~~~~~~~~~~ 183 (223)
++.+.......
T Consensus 159 ~~~~~~~~~~~ 169 (221)
T cd04148 159 VRQIRLRRDSK 169 (221)
T ss_pred HHHHHhhhccc
Confidence 99887655443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=186.80 Aligned_cols=158 Identities=49% Similarity=0.866 Sum_probs=145.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888889999888888888888899999999999988888899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+++++++..+..|+..+......+.|+++++||+|+........++..+++...+.+++++|++++.|+.++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887766799999999999975666678889999998899999999999999999999886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=184.17 Aligned_cols=161 Identities=34% Similarity=0.573 Sum_probs=141.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||++++....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998888777777766544 445567888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.++..+..|+..+..... .++|+++|+||+|+........++...++..++++++++||+++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888887643 57999999999999765556677788888889999999999999999999999988
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=188.57 Aligned_cols=163 Identities=29% Similarity=0.421 Sum_probs=135.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||+++|....+...+.++.. ++....+.+++..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999998888776666664 3445567778878899999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccc-cccCCHHHHHHHHH-HhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK-QRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++.+++.+..|+..+..... .++|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999854 34455555544443 4567899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 174 QRMLEKA 180 (223)
Q Consensus 174 ~~~~~~~ 180 (223)
+.+....
T Consensus 160 ~~~~~~~ 166 (198)
T cd04147 160 RQANLPY 166 (198)
T ss_pred HHhhccc
Confidence 9776433
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=183.48 Aligned_cols=160 Identities=30% Similarity=0.602 Sum_probs=135.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+.||+++|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 368999999999999999999998888888888776653 4567788888999999999999988888889999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEecCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTSAK 160 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (223)
||++++++++.+. .|+..+.... .+.|+++++||.|+... ..+...+.++++...+. +++++||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999986 5888877643 46899999999998532 23456777888888775 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRM 176 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (223)
+|.|++++|++|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=182.60 Aligned_cols=158 Identities=38% Similarity=0.628 Sum_probs=140.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998777777777766 4555666677777899999999999888888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+++++++..+..|...+..... .+.|+++++||+|+...+....+++.+++..++.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988887765 579999999999997767777888999999999999999999999999999999875
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=184.90 Aligned_cols=163 Identities=28% Similarity=0.542 Sum_probs=136.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+.||+|+|++|+|||||++++..+.+...+.++....+. ..+.+++..+.+.+||++|++.+......++..+|++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 369999999999999999999977777766666655553 3556778778899999999988877777778999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc----------cccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 95 YDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK----------QRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
||+++.++++.+. .|+..+..... ++|+++|+||.|+.. .+.+..++...+++..+. +|+++||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999997 59999887654 599999999999843 234556788888999985 8999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEK 179 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (223)
.|++++|+++.+.++.-
T Consensus 159 ~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 159 EGVDDVFEAATRAALLV 175 (187)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999877544
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=186.50 Aligned_cols=165 Identities=37% Similarity=0.625 Sum_probs=152.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|.+|+|||+|..++....|...+.+|+. +.+.+.+.+++..+.+.|+||+|++.+..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999988 5557788889999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
||+++++.||+.+..++..+.+... ..+|+++||||+|+...+.+..++.+.++..++++|+|+||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855443 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
...+...
T Consensus 161 ~r~~~~~ 167 (196)
T KOG0395|consen 161 VREIRLP 167 (196)
T ss_pred HHHHHhh
Confidence 9988763
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=184.04 Aligned_cols=170 Identities=23% Similarity=0.362 Sum_probs=134.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+.+||+++|++|||||||++++....+... .+|.+.+.....+.. ++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999997777544 577776665555544 345688999999999999888999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH--h----CCcEEEecCCCCCCH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS--V----GAVHFHTSAKMNRGI 165 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~~i 165 (223)
+|+|++++.++..+..|+..+.... ..+.|+++++||+|+... ...++...+... . +.+++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999999888887776543 346899999999998543 234444444421 1 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8722 166 EEMFLELSQRMLEKAQEFDLA 186 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~~~ 186 (223)
++++++|.+.+.+.++..+..
T Consensus 159 ~~l~~~l~~~l~~~~~~~~~~ 179 (183)
T cd04152 159 QEGLEKLYEMILKRRKMLRQQ 179 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 999999999998776655443
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=183.89 Aligned_cols=155 Identities=20% Similarity=0.302 Sum_probs=123.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++....+. .+.+|.+.++. .+.. ..+.+.+|||+|++.+...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999866664 35677776653 2223 3478999999999999888899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|+++|+||+|+... +..+++.+++.. ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877665432 2346899999999998543 345666655432 22368999999999999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=181.33 Aligned_cols=163 Identities=34% Similarity=0.523 Sum_probs=140.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.||+++|++|+|||||++++....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777777766554 345567777788999999999998888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|+++..+++.+..|+..+.... ..+.|+++++||+|+...+.+..++...++..++.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999877776653 356899999999999766666667778888888899999999999999999999998
Q ss_pred HHHHH
Q psy8722 175 RMLEK 179 (223)
Q Consensus 175 ~~~~~ 179 (223)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 77544
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=183.22 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=124.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|+.|||||||++++..+.+. .+.+|.+.++. .+..+ .+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999876665 45677776653 33343 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-----CcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|++|++||.|+.+.. ..++..+.+.... ..++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998888766655322 22468999999999986543 3344333332211 135579999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=185.79 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=125.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
.|+++|++|||||||+++|....+...+.+|.+... ..+++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999998878777788887653 2234445889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH----HHHHHHHHHhCCcEEEecCCC------CCCHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ----EDAEKYAQSVGAVHFHTSAKM------NRGIE 166 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 166 (223)
.+++.++.....|+..+.... +++|+++|+||.|+...+.+.. .++..++...++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999888876443 5799999999999876553321 123455566677888888888 99999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998874
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=178.02 Aligned_cols=157 Identities=32% Similarity=0.658 Sum_probs=132.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998888766666665443 445567788899999999999988888888889999999999
Q ss_pred ECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccc-----------cCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 96 DITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQR-----------TVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
|++++.++..... |+..+.... .+.|+++|+||+|+.... .+..++..+++..++. +++++||+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988654 777777654 379999999999985544 3356778888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=184.29 Aligned_cols=167 Identities=29% Similarity=0.522 Sum_probs=145.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
......+||+++|++|||||||++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34567799999999999999999999988888888999999888877778888899999999999999888888999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||+++..++..+..|+..+.... .++|+++++||.|+... .... +..+++...++.++++|++++.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988764 46899999999998543 2333 3346777788899999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
.+|++.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988754
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=183.38 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=126.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-----GKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+||+++|+.|+|||||++++..+.+...+.+|++.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999988877777663 467899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-------------------CCCCeEEEEEeCCCccccccCCHHH----HHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-------------------GNDICLTIAGNKIDLEKQRTVMQED----AEKYA 147 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 147 (223)
+|+|||++++.||+.+..|+..+.... ..++|++||+||.|+...+.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 2468999999999997665544432 44667
Q ss_pred HHhCCcEEEecCCCCC
Q psy8722 148 QSVGAVHFHTSAKMNR 163 (223)
Q Consensus 148 ~~~~~~~~~~Sa~~~~ 163 (223)
...+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899998887776544
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=179.57 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=125.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|||||||++++....+.. +.+|.+..+. .+..+ .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999776653 5677766653 33333 4789999999999888888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC------CcEEEecCCCCCCHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG------AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 169 (223)
++++.++..+..|+..+.... ..+.|+++++||.|+.+ .+..+++.+++...+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888876532 24589999999999854 345666666654322 257899999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998877654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=183.31 Aligned_cols=167 Identities=31% Similarity=0.594 Sum_probs=150.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
...+|++|||+.++|||+|+-.+..+.|+..+.||....+ ...+.++ ++.+.+.+|||+|+++|.+++...|.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999999999999999998555 5567784 9999999999999999999998899999999
Q ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
++||++.++.||+++.. |+.++..++ +++|+++||+|.||.+ ...+..++..+++++.|+ .|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999765 999999988 6799999999999963 246778999999999995 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
||++..|+.++|+..+...+...+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998887644
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=180.76 Aligned_cols=157 Identities=18% Similarity=0.294 Sum_probs=122.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++..+.+. .+.+|.+.++.. +..+ .+.+.+||++|++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999866664 456777776543 3333 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.+++....|+..+... ...++|++||+||.|+.+.. ..+++.+..... .+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988877776432 22468999999999986433 233333322211 2246689999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=180.46 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=123.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+... .+.+.+||++|++.+...+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 557999999999999999999998766654 5677776653 33343 478999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++.....++..+... ...+.|++||+||.|+.+.. ..+++...... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888766665332 22458999999999985432 23333222211 11246689999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKA 180 (223)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (223)
++|++|.+.+.+.+
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=178.64 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=124.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
......++|+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3446679999999999999999999997644 3445666543 33444553 78899999999988888888999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 163 (223)
++++|||++++.++.....|+..+... ...++|+++|+||+|+.... ..+++.+++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999988888776532 33578999999999986533 4455555543 235689999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|+++++
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=180.06 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=117.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|.+|+|||||++++..+.+. .+.+|.+.++. .+... .+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 46677776653 23333 478999999999999888999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|++++.+++.+..|+..+.. ....+.|+++++||.|+.... ..++..+... ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999998887666533 222458999999999985432 2233222221 122356799999999999999
Q ss_pred HHHHH
Q psy8722 170 LELSQ 174 (223)
Q Consensus 170 ~~i~~ 174 (223)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=175.66 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=125.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||+++|..+.+...+. +....+ .....+.+..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-Ccccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999888865533 332222 233455667789999999999887777777789999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHHhC--CcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++...++..+. .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5888887654 479999999999996554321 233334444443 3799999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
.+.+.+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-29 Score=177.53 Aligned_cols=172 Identities=28% Similarity=0.510 Sum_probs=162.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.+..||++++|..++||||+|+++..+-|...+.-+++.++..+.+.+.+..+...+||++|++.|......|+++|.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 44678899999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+.++||+-.|+.||+....|++.+....+. +|.++|-||+|+.+..++...+++.+++.+...+|.+|++...|+..+|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999999999987754 9999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQE 182 (223)
Q Consensus 170 ~~i~~~~~~~~~~ 182 (223)
..+++++.++..+
T Consensus 174 ~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988776
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=183.14 Aligned_cols=142 Identities=20% Similarity=0.404 Sum_probs=123.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-------------CeEEEEEEEeCCCcccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-------------GKRLNLAIWDTAGQERF 77 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~ 77 (223)
+....+||+|+|+.|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45678999999999999999999999988888888999998877766664 24688999999999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC------------CCCeEEEEEeCCCccccc---c---CC
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG------------NDICLTIAGNKIDLEKQR---T---VM 139 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~~ 139 (223)
..++..++++++++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 258999999999996542 2 35
Q ss_pred HHHHHHHHHHhCC
Q psy8722 140 QEDAEKYAQSVGA 152 (223)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (223)
.+++++++.++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7899999999885
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=172.40 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=117.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+|+++|++|||||||+++|.... ....+.++.+.... .+.. ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999765 34556677765432 2223 3478899999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKML---GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 167 (223)
|++++.++.....|+..+.... ..++|+++|+||+|+.... ..++..+... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887765432 3579999999999986432 2233332221 1123589999999999999
Q ss_pred HHHHHHH
Q psy8722 168 MFLELSQ 174 (223)
Q Consensus 168 ~~~~i~~ 174 (223)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=175.29 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=119.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++|||||||++++.+. +...+.+|.+... ..+..++ +.+.+||+||++.+...+..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999866 6666677777643 3444444 788999999999998889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHH------HHHHHhC--CcEEEecCCCC-----
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAE------KYAQSVG--AVHFHTSAKMN----- 162 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~----- 162 (223)
++++.++..+..|+..+..... .++|+++|+||.|+.+.+. ..+.. +++...+ ..++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888765422 4689999999999866542 22222 2232233 35677999998
Q ss_pred -CCHHHHHHHHHH
Q psy8722 163 -RGIEEMFLELSQ 174 (223)
Q Consensus 163 -~~i~~~~~~i~~ 174 (223)
.|+.+.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=171.16 Aligned_cols=155 Identities=18% Similarity=0.273 Sum_probs=119.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.++|+++|++|+|||||++++..+.+.. ..++.+.++. .+..+ .+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 347899999999999999999999776654 4567666543 33344 378999999999998888889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++.....|+..+.... ..+.|+++++||+|+... ...++..+.. ...+++++++||+++.|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 9999999999888877666654332 246899999999998553 2333332222 2234578999999999999
Q ss_pred HHHHHHHH
Q psy8722 167 EMFLELSQ 174 (223)
Q Consensus 167 ~~~~~i~~ 174 (223)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=168.43 Aligned_cols=141 Identities=35% Similarity=0.626 Sum_probs=128.4
Q ss_pred CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc
Q psy8722 38 DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML 117 (223)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (223)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999999988888899999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 118 GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 118 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
..++|+++|+||+|+...+.+..+++..++..++..|+++||++|.|++++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999998777788888889999899999999999999999999999988755
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=172.54 Aligned_cols=157 Identities=26% Similarity=0.358 Sum_probs=124.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ ..+.+||+||+..+...+..+++++|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 466899999999999999999999977663 4556655543 3444555 6788999999998888888899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH----------------hCCcE
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----------------VGAVH 154 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~ 154 (223)
++|+|+++..++.....|+..+.... ..+.|+++++||.|+.. .+..++..+++.. ....+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999999988887777765433 24689999999999854 4455666666542 22468
Q ss_pred EEecCCCCCCHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+++||++++|+.++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999875
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=168.55 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=117.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++|+|||||+++|....+.. ..++.+..+ ..+..+ ..+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999777653 356666544 233332 34789999999999888888888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH------HHhCCcEEEecCCCCCCHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA------QSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++.++..+..|+..+.+.. ..+.|+++|+||+|+.... ..+++.... ...+.+++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999888777765432 2478999999999985432 233332221 1223468999999999999999
Q ss_pred HHHHH
Q psy8722 170 LELSQ 174 (223)
Q Consensus 170 ~~i~~ 174 (223)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=167.79 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=117.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
||+++|++|+|||||++++..... ...+.++.+..+ ..+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999975322 223344555544 3344444 788999999999998888889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-------hCCcEEEecCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-------VGAVHFHTSAKMN 162 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 162 (223)
+++|+|++++.++.....|+..+.+.. ..++|+++++||+|+... ...++..++... .+.+++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765532 357899999999998543 334444444432 2357999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=164.88 Aligned_cols=160 Identities=29% Similarity=0.440 Sum_probs=126.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+++||+++|+.|||||||++++....... ..||.+... ..+.+++ +.+.+||.+|+..++..|..++.++|
T Consensus 9 ~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 9 KSKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred cccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccc
Confidence 345889999999999999999999998655443 466766554 4455566 67899999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh------CCcEEEecCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV------GAVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 162 (223)
++|||+|.++.+.+......+..+... .-.+.|+++++||.|+.+. ...+++....... .+.++.+||.+|
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred eeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 999999999988888777655554432 2257999999999998653 3556666554332 234788999999
Q ss_pred CCHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRM 176 (223)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (223)
+|+.+.++||.+++
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=164.27 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++++|||||++++....+. .+.++.+.++. .+... .+.+.+|||||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999866654 34566665543 23333 4789999999999998888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++++.++.....|+..+ ......++|+++++||+|+.+.. ...+..+... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998887766655443 32222468999999999986433 2233222221 1124699999999999999999
Q ss_pred HHHH
Q psy8722 171 ELSQ 174 (223)
Q Consensus 171 ~i~~ 174 (223)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9874
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=165.47 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=118.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|+|||||++++.+... ..+.++.+... ..+.+.+ +.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999997763 34455665544 3334443 789999999999988889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++..+.... ...+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877765533 3578999999999986543 23333333322 345799999999999999999
Q ss_pred HHHH
Q psy8722 171 ELSQ 174 (223)
Q Consensus 171 ~i~~ 174 (223)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=166.50 Aligned_cols=157 Identities=24% Similarity=0.273 Sum_probs=121.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|.+|||||||++++.+..+.. +.+|.+... ..+.+++ +.+.+||+||+..+...+..++.++|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3667999999999999999999999766542 344544432 3334444 7789999999998888889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh------------CCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV------------GAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~S 158 (223)
++|+|++++.++.....|+..+... ...++|+++++||.|+.. .+..+++.+..... ...++.+|
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999998888777765432 224689999999999854 34555555443211 22488999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
|+++.|++++++||.++
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=162.21 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=109.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL---------GPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~ 87 (223)
+|+++|++|+|||||+++|.+..+.....+..+.+.....+.. ..+.+.+|||||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999977665433333333332223333 3478999999997421110 0011233
Q ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 88 SNGAVLVYDITDEDSF--EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
+|++++|+|+++..++ +....|+..+.... .+.|+++|+||.|+.....+ .+..++....+.+++++||+++.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence 6899999999987643 55667877776543 36899999999998654332 2245555556678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++|+++.+.++
T Consensus 157 ~~l~~~l~~~~~ 168 (168)
T cd01897 157 DEVKNKACELLL 168 (168)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=163.61 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-------CCCCCccc------cceeEEEEEEE--E---CCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK-------FNEKHITT------LQASFLNKKLN--I---AGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 78 (223)
+|+++|++++|||||+++|.... +...+.++ .+.++...... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998532 11122221 22333322222 2 5667889999999999998
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc---EE
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV---HF 155 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 155 (223)
..+..+++.+|++|+|+|+++..++.....|.... ..++|+++|+||+|+.... ......++++.++++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88888999999999999999876666666665432 2368999999999985432 123344566666663 89
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=156.32 Aligned_cols=158 Identities=25% Similarity=0.416 Sum_probs=129.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999997778778788888888777777777778899999999998888888888999999999
Q ss_pred EECCCH-HHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 95 YDITDE-DSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|.... .++.... .|...+......+.|+++++||.|+.... ...+....+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666655 67777766654478999999999986543 33344444444455689999999999999999886
Q ss_pred H
Q psy8722 173 S 173 (223)
Q Consensus 173 ~ 173 (223)
-
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=161.17 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=112.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---ccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FHALGPIYY---RMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d 89 (223)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||... ...+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999865443222222233222223333332 4789999999642 222333333 4599
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDE-DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
++++|+|++++ .+++.+..|++.+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999999998877542 36899999999998654432 3444455555 3678999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 166 EEMFLELSQR 175 (223)
Q Consensus 166 ~~~~~~i~~~ 175 (223)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=159.56 Aligned_cols=151 Identities=26% Similarity=0.339 Sum_probs=119.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
|+++|++|+|||||++++.+..+...+.++.+..+.. +..++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888888888876643 33333 7899999999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 98 TDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++..++.....|+..+... ...++|+++++||.|+..... .++..... .....+++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999998887777765442 224689999999999865432 22222121 112357899999999999999999
Q ss_pred HHH
Q psy8722 172 LSQ 174 (223)
Q Consensus 172 i~~ 174 (223)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-25 Score=180.30 Aligned_cols=191 Identities=17% Similarity=0.277 Sum_probs=141.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccccc-------c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGP-------I 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~-------~ 83 (223)
.+.++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++ .++.||||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 566799999999999999999999776642 2223333444444455555 4689999999743 222211 2
Q ss_pred ccccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 160 (223)
.+.++|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+... ...+..+++...+ ..++.+||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 3678999999999765 344443 355555432 4577889999998543 2445555655544 478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeecCCCCCCCC
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 213 (223)
+|.|++++|++|.+.+.+....++.+...+.+.+ +.+|++....+.+++||+.
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~ 256 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKL 256 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceE
Confidence 9999999999999999998888888888877766 6799999999999999985
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=162.30 Aligned_cols=172 Identities=36% Similarity=0.563 Sum_probs=142.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
..+||+++|+.|+|||||+++|....+...+.++.+..+........+..+.+.+|||+|++.+...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999999999998888877777776668899999999999999999999999999999
Q ss_pred EEECCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHh---CCcEEEe
Q psy8722 94 VYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSV---GAVHFHT 157 (223)
Q Consensus 94 v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 157 (223)
|+|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999999 5566667789999988876679999999999996553 22223322222222 2348999
Q ss_pred cCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8722 158 SAK--MNRGIEEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 158 Sa~--~~~~i~~~~~~i~~~~~~~~~~~~~ 185 (223)
|+. ++.++.++|..+...+.........
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKLVL 193 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhhhh
Confidence 999 9999999999999999876655443
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=149.02 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=127.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.+++++|+++|..|+||||++++|.+.. .....||.+.+ .+++.+++ +.+.+||.+|+...++.|+.||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~--Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ--IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee--eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4679999999999999999999998655 33345666654 45555555 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCC----HHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVM----QEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
|+|+|.+++..++.....++.+ ....-.+.|++|++||.|+...-... .-+..++++....+.+.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999998887766544332 22222468999999999986432111 122344556667889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
+.+.|++..+.++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=158.64 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=117.8
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
..+..+.++|+++|++|+|||||++++.+..+. ...++.+..+ ..+..++ ..+.+||++|+..+...+..+++++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence 334456899999999999999999999976553 2345555433 3344454 6788999999988888888889999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSA 159 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 159 (223)
|++++|+|+.+..++.....|+..+... ...++|+++++||.|+.... ..++. ...+++ +++++||
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeEC
Confidence 9999999999998888877766655432 23468999999999985432 22222 333332 3689999
Q ss_pred CCCCCHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQ 174 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~ 174 (223)
++|+|++++|+||++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=175.49 Aligned_cols=189 Identities=14% Similarity=0.098 Sum_probs=134.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 87 (223)
+|+++|.+|||||||+|+|++.... ....+.++.+........++ ..+.+|||||...... ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999976653 23334344433222222233 4688999999653211 12345789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... ..+....++...++ +++.+||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 3689999999999853222 22334444454554 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh----ccccccceeeecCCCCCCCC
Q psy8722 167 EMFLELSQRMLEKAQEFDLAKASELSR----RGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 213 (223)
+++++|.+.+.+....++.+...+.+. ++.+|++.....++++||+.
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~ 204 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSV 204 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceE
Confidence 999999998877666666666555554 47899999999999999986
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=164.13 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=114.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--c------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--L------GPIY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~------~~~~ 84 (223)
++.++|+|+|++|||||||++++.+..+.....+..+.+.....+.+.+. ..+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999976644333333333333444444443 3688999999732110 0 0112
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.++.....|...+......++|+++|+||+|+...... ...+...+.+++++||+++.|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCC
Confidence 568999999999999988888888888877665556899999999998544321 134445567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
+.+++++|..++
T Consensus 193 i~~l~~~L~~~~ 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=155.15 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=106.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC---CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED---KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+.|+++|++|+|||||+++|.+. .+...+.++.+.+.....+.+.+ ...+.+|||||++.+......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999853 33333334445544444455542 357899999999988766667788999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHH---hCCcEEEecCCCCCC
Q psy8722 93 LVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQS---VGAVHFHTSAKMNRG 164 (223)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 164 (223)
+|+|+++ ..+.+.+. .+... ...|+++++||+|+..... ...++..+.+.. .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33333322 22222 1248999999999864321 112344444444 357899999999999
Q ss_pred HHHHHHHHHH
Q psy8722 165 IEEMFLELSQ 174 (223)
Q Consensus 165 i~~~~~~i~~ 174 (223)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=169.92 Aligned_cols=161 Identities=21% Similarity=0.154 Sum_probs=119.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccccc---ccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPI---YYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~~d 89 (223)
.|+|||.+|||||||+++|+.........+.++.......+.+.+ ...+.+||+||...- ..+... .+..++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 689999999999999999996544433344445554444555532 146889999996421 122223 345789
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
++++|+|+++.++++.+..|..++..... .++|+++|+||+|+........+....++...+.+++++||++++|+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 99999999988889999999999887643 3689999999999865544333444555556678899999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
++++|.+.+.+
T Consensus 319 L~~~L~~~l~~ 329 (335)
T PRK12299 319 LLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=153.15 Aligned_cols=134 Identities=22% Similarity=0.208 Sum_probs=99.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccCCEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-----RFHALGPIYYRMSNGA 91 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 91 (223)
||+++|++|+|||||+++|.+..+. +.++.+.++ .. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999866542 233332222 11 588999973 2333323 47899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.++.. ..|...+ ..|+++++||+|+.. +....++.+++++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 3444322 249999999999854 33456677788877776 799999999999999998
Q ss_pred HHH
Q psy8722 171 ELS 173 (223)
Q Consensus 171 ~i~ 173 (223)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=149.47 Aligned_cols=162 Identities=18% Similarity=0.265 Sum_probs=129.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
-...++.+|+++|--+|||||++.+|..++.... .||+|...... .+. ++.+.+||.+|+++++..|..|+++.+
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v--~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETV--EYK--NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEE--EEc--ceEEEEEecCCCcccccchhhhccCCc
Confidence 3468899999999999999999999986666544 78888766444 444 488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-----cEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-----VHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~ 163 (223)
++|||+|.+|++.+...+.-+..+-.... .+.|+++++||.|+++.- +..++.+......+ .+..++|.+|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 99999999999988888775555544433 579999999999987654 44555444443333 35569999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLE 178 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (223)
|+.+.++|+.+.+..
T Consensus 165 GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKK 179 (181)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999988754
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=146.72 Aligned_cols=153 Identities=45% Similarity=0.781 Sum_probs=121.6
Q ss_pred EECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (223)
++|++|+|||||++++..... .....++. .++........+....+.+||+||+..+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999997766 44444555 6776777777777889999999998888777788889999999999999
Q ss_pred CHHHHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCccccccCCHHH-HHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 99 DEDSFEKVKNWV-KELKKMLGNDICLTIAGNKIDLEKQRTVMQED-AEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 99 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++.++..+..|. .........+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999888873 33333445679999999999986554332222 4455566678999999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=148.42 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=111.5
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY--RMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ 91 (223)
|+|++|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+... ...++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999997766555566667766666666766 46889999998766542 34445 489999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|+.+..... .|...+.. .++|+++++||+|+.+...+. .....+...++.+++++|+.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865432 33333333 368999999999996554433 3345777778899999999999999999999
Q ss_pred HHHH
Q psy8722 172 LSQR 175 (223)
Q Consensus 172 i~~~ 175 (223)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=159.59 Aligned_cols=154 Identities=25% Similarity=0.245 Sum_probs=104.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC-----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG-----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 80 (223)
+...++|+++|++|+|||||+++|.+..+.....++.+.. ...+... .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3457899999999999999999999777765555555443 2333333 488999999 3445444
Q ss_pred cccccc----cCCEEEEEEECCCHHHH-H---------HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 81 GPIYYR----MSNGAVLVYDITDEDSF-E---------KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 81 ~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
+..++. .++++++|+|.+..... + .-..+...+. ..++|+++|+||+|+.... .+...++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 444443 45788888887643211 0 0011122222 2468999999999985433 3445566
Q ss_pred HHHhCC---------cEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 147 AQSVGA---------VHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..++. +++++||++| |+++++++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 666664 4799999999 999999999987654
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=165.13 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=114.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 84 (223)
..++|+++|.+|+|||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4489999999999999999999977655444555666666777777432 478899999962 122211 24
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.... ..... .....+++.+||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence 6889999999999999888888777777766544568999999999985422 11111 12224689999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 165 IEEMFLELSQR 175 (223)
Q Consensus 165 i~~~~~~i~~~ 175 (223)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=149.13 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
.|+++|++|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999777766544555555444444443 13467889999999888888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHH------HhCCcEEEecCCCCCCHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQ------SVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|+++........ .+..+.. .++|+++|+||+|+....... ......+.. ....+++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998843222111 1122222 368999999999986432111 111111111 11357999999999999999
Q ss_pred HHHHHHHH
Q psy8722 169 FLELSQRM 176 (223)
Q Consensus 169 ~~~i~~~~ 176 (223)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-23 Score=154.73 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=104.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (223)
-+|+++|.+++|||||+++|.. +.+...+ ..+.+.++......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999986 4544332 1223444444444444555789999999999999888
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-CCHHHHHHHHH-------HhCCc
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-VMQEDAEKYAQ-------SVGAV 153 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 153 (223)
..+++++|++++|+|+.+.. +.....|+..+.. .++|+++++||+|+...+. ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2233333333332 3689999999999854322 11234444442 23678
Q ss_pred EEEecCCCCCCHHHH
Q psy8722 154 HFHTSAKMNRGIEEM 168 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~ 168 (223)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887543
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=160.90 Aligned_cols=159 Identities=20% Similarity=0.192 Sum_probs=115.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 88 (223)
..|+|+|.+|||||||+++|+.........+.++.......+.+.+ ...+.+||+||.... ..+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999996544333333334443344444443 256889999996422 1233333 3469
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 89 NGAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 89 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++++|+|+++. .+++.+..|..++..... .++|+++|+||+|+..... ..+..+++...++.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 678888888888776532 3689999999999865432 2344555666677899999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=146.51 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=107.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYY--RM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 87 (223)
|+|+++|.||+|||||+|+|++........|+.+.+.....+.+.+ ..+.++|+||...... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998887777778888888888888888 4567779999543222 122233 68
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
.|++|+|+|+++.+.- ..+...+. ..++|+++++||+|+...+... -+...+.+.+++|++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999874322 12222222 2479999999999986554432 346778888999999999999999999
Q ss_pred HHHHH
Q psy8722 168 MFLEL 172 (223)
Q Consensus 168 ~~~~i 172 (223)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=139.16 Aligned_cols=114 Identities=31% Similarity=0.556 Sum_probs=88.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC--CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN--EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
||+|+|++|+|||||+++|.+..+. ..+..+.+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999977776 22234444455555666677766799999999998888877779999999999
Q ss_pred EECCCHHHHHHHHHH---HHHHHHHcCCCCeEEEEEeCCC
Q psy8722 95 YDITDEDSFEKVKNW---VKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 131 (223)
||++++.+++.+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999998654 5555543 34599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=165.43 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=118.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 83 (223)
.+.++|+++|++|+|||||+|+|++... .....++++.++....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4578999999999999999999996543 234456777787777777877 45789999997654332 235
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...++..++.+++.+|+++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999998877664 6555432 36899999999998543 12345666778899999997 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|+.++|+.+.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=158.21 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=142.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~ 83 (223)
.+.--|+++|.||||||||+|++++.... .+..+.+++......+..+ ..++.++||||-..... ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 45667999999999999999999976664 4555555555444444444 46788899999432222 2234
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
.+..+|+++||+|+++...- .....++.+.. .+.|+++++||+|.........+....+.....+ ..+.+||.+|
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 56889999999999984322 11122333333 3579999999999866544223333333344444 6899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeecCCCCCCCC
Q psy8722 163 RGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 213 (223)
.|++.+.+.+...+.+...-++.+...+.+.+ +.+|++....+++++|||.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv 212 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSV 212 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceE
Confidence 99999999999999999888888888887776 8899999999999999985
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=148.91 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=107.4
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccccccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERF----HALG---PIYYRMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~ 91 (223)
++|++|||||||+++|.+........+..+.+.....+.++ + ..+.+|||||.... .... ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999765422222333333333334444 4 56889999996421 2222 2346789999
Q ss_pred EEEEECCCH------HHHHHHHHHHHHHHHHcC-------CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEec
Q psy8722 92 VLVYDITDE------DSFEKVKNWVKELKKMLG-------NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (223)
++|+|+.+. .++..+..|...+..... .+.|+++|+||+|+..................+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999988 577787777777765432 3689999999999865543332222344445567899999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
++++.|++++++++...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-22 Score=138.59 Aligned_cols=167 Identities=27% Similarity=0.539 Sum_probs=146.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..-.+||.++|++..|||||+-.+..+.+.+++..+.|..+..+++.+.+..+.+.+||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 35689999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc--ccc---CCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK--QRT---VMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+||++.+.+...+.+|+...+...+.-+|+ +||+|.|+-- +.+ .....+..+++-++++.+.+|+..+.|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 99999999999999999999998877666665 7899999611 111 11244667888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
.+|..+..++..-
T Consensus 176 KIFK~vlAklFnL 188 (205)
T KOG1673|consen 176 KIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHhCC
Confidence 9999888777654
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=142.35 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=107.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 86 (223)
++|+++|++|+|||||++++.+.... ....++.+.++....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999966542 23344555555555555554 56889999997654322 224567
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.+|++++|+|++++.+......|.. ..+.|+++++||+|+...... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777666544332 346899999999998654432 344456789999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987753
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=162.00 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=130.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccc--------cccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH--------ALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 84 (223)
+.-.|+++|++|||||||+|+|++..... ...+.++..........+ ...+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45679999999999999999999766532 222322222222222222 2678999999964332 122335
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (223)
+.++|++++|+|+++.... .....+..+. ..+.|+++|+||+|+............++....+ .+++.+||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6889999999999883211 1122222222 2358999999999986332222344445555444 478999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccccccceeeecCCCCCCCC
Q psy8722 164 GIEEMFLELSQRMLEKAQEFDLAKASELSR----RGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 213 (223)
|++++++++.+.+.+....++.+...+.+. .+.+|++....+++++||+.
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~ 211 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSV 211 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceE
Confidence 999999999998876665555554444444 36689999999999999984
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=167.73 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=120.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHALG 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (223)
...++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++. .+.+|||||.. .+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3568999999999999999999996654 3455677777776667777775 45799999953 222221
Q ss_pred -ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHH-HHHHhCCcEEEe
Q psy8722 82 -PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEK-YAQSVGAVHFHT 157 (223)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~ 157 (223)
..+++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+...... ..++..+ +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23568999999999999988777664 3333332 47899999999998643210 1111221 222233689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~ 190 (223)
||++|.|++++|+.+.+.+.............+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~ 395 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNA 395 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999988766555544444333
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=164.82 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=114.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (223)
..++|+++|++|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999996553 344456677777777777776 56789999997654332 2236
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 788999999999999877765544433 3468999999999986443221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=138.73 Aligned_cols=156 Identities=25% Similarity=0.316 Sum_probs=125.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
..++.+.++|-.++|||||+|.+..+.+.+.-.|+.|..... +....+.+.+||.+|+..|.++|+.|++.+++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 357889999999999999999998888887778888876533 4456688999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~ 163 (223)
||+|+.+++.+...++ +...+.+..-.++|++|+|||.|+.++- .... +...+|. ..|.+|+++..
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~---li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIA---LIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHH---HHHHhCccccccceEEEEEEEEcCCc
Confidence 9999999988877765 3334444444689999999999986543 2222 3334442 47889999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++.+..||+++-.
T Consensus 169 Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 169 NIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999998654
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-22 Score=148.90 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=103.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC----CC---CCCCccccceeEEEEEEEEC------------CeEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED----KF---NEKHITTLQASFLNKKLNIA------------GKRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 76 (223)
+||+++|++++|||||+++|... .+ ..+..++.+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11 11122233333333333332 3357889999999876
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHH------
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQ------ 148 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~------ 148 (223)
+..........+|++++|+|+.+.........|. +.... +.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5433334456789999999998754333332222 11222 579999999999853221 11222222211
Q ss_pred -HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 149 -SVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 149 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..+++++.+||+++.|++++++++.+++...
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1356899999999999999999999887643
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=133.00 Aligned_cols=172 Identities=24% Similarity=0.323 Sum_probs=138.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-cccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-HALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~ 87 (223)
.--+..||+++|..++|||++++.+..... .....+|+...+....-.-.+..-.++++||.|...+ ..+-..|+.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 334568999999999999999999983333 3344566655554433333455558999999996655 5566788899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|++++||+..+++||+.+.-+...+.+... ..+|++|++||+|+.+++.+..+-+..+++...+..+++++.+...+-
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999999998877777766543 468999999999999899998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQE 182 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~ 182 (223)
+.|..++..+.+...+
T Consensus 165 epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQSK 180 (198)
T ss_pred hHHHHHHHhccCCccc
Confidence 9999999887665433
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=167.27 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=115.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCcc------ccceeEEEEE--EEE---CCeEEEEEEEeCCCccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK-------FNEKHIT------TLQASFLNKK--LNI---AGKRLNLAIWDTAGQER 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~ 76 (223)
--||+++|+.++|||||+++|+... +...+.. ..|.++.... +.+ ++..+.+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998532 2222211 1233333322 323 46668999999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---c
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---V 153 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 153 (223)
|...+..++..+|++|+|+|+++..+......|..... .++|+++|+||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98888899999999999999999766666666654443 368999999999986432 12333455566665 3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
++.+||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 799999999999999999987663
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=156.64 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=115.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FHALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (223)
.|+|+|.+|||||||+++|++........+.++.......+.+.+ ...+.+||+||... ...+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999996554333334444444334444441 24688999999532 22233334 34589
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 90 GAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
++++|+|+++. .+++....|..++..... .++|++||+||+|+.. ..+...++...++.+++.+||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677788888888877543 3689999999999843 23445666666778899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
+++++++|.+.+...
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998877554
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=160.18 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=114.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------ccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF--HALGP------IYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~ 87 (223)
.+|+++|++|||||||+|+|++........++.+.+.....+.+.+. ..+.+|||+|.... ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999976655545556666666666666542 25789999997331 22222 23588
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 166 (223)
+|++++|+|++++.++..+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998888876666666655445789999999999853211 1111 1123445 4889999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=141.18 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccccCC
Q psy8722 19 VLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYYRMSN 89 (223)
Q Consensus 19 ~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 89 (223)
+++|.+|+|||||+++|..... .....+..+.+........++ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999996542 122233444444444455555 5788999999876543 2344678899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
++++|+|..+..+.... .+...+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443332 12222222 25899999999998654322 233344565 7899999999999999
Q ss_pred HHHHHHH
Q psy8722 169 FLELSQR 175 (223)
Q Consensus 169 ~~~i~~~ 175 (223)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=159.05 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=113.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---------- 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (223)
...++|+++|.+|+|||||+|+|++... .....++++.+.....+..++. .+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 4568999999999999999999996542 3344455555555555556664 67899999975443221
Q ss_pred -ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcEE
Q psy8722 82 -PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVHF 155 (223)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (223)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++|+||+|+.... ...++.. ++... .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 23578999999999999887765543 3333322 368999999999986211 1122222 22222 236899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
++||++|.|+.++|+++.+.+.......
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999998876554443
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=144.37 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCcc----------------ccceeEEEEEEEECCeEEEEEEEeCCCccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHIT----------------TLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (223)
+|+++|.+|+|||||+++|........... +.+........... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999987666543211 12222222233333 467899999999888888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHH---------
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQS--------- 149 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 149 (223)
+..+++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+...... ..+...+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888899999999999988654332 233333333 46899999999998642211 12333333333
Q ss_pred -----hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 -----VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
...+++++||+++.|+++++.++...+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246789999999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=162.81 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=114.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+..+|+++|+.++|||||+++|....+.....++++.++....+.+++. ..+.||||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45679999999999999999999987777665666666665555555443 26889999999999988888889999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC---------CcEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG---------AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 163 (223)
+|+|+++....+.... +......++|+++++||+|+.+. ..+...+.+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999987432222222 22222246899999999998543 2334444433332 468999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999873
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-21 Score=140.58 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----cccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH----ALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i 92 (223)
+|+++|++|+|||||+|++.+... .. ..+. .+.+... .+|||||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999875421 11 1121 1122222 269999963222 11123368999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--cEEEecCCCCCCHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+... ..+...+++...++ +++++||++++|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999988765 22344332 235789999999998542 35667777778875 899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
.+.+.+...
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 988776443
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=161.42 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=110.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 84 (223)
...+|+|+|.+|||||||+|+|++... .....++.+.+.....+.+++. .+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 447899999999999999999996553 3345566666666666666664 578999999763 22234456
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
++.+|++|+|+|+++..++.. ..|...+.. .++|+++|+||+|+.... .+. .++. ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~-~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADA-AALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhh-HHHH-hcCCCCeEEEEcCCCC
Confidence 789999999999998755432 334444443 368999999999985421 112 2222 2343 45799999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLE 178 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~ 178 (223)
|++++|++|.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=155.64 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=126.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----cc---ccccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----LG---PIYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~d 89 (223)
.|+|+|.+|||||||+|+|++........+.++.......+...+. ..+.++||||...-.. +. ...+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 7999999999999999999966554444555555544445555431 3578899999543111 11 12467899
Q ss_pred EEEEEEECC---CHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCC
Q psy8722 90 GAVLVYDIT---DEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 162 (223)
++++|+|++ +...++....|+..+..... .+.|+++|+||+|+.....+ .+...++....+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45667777788887776532 35799999999998543322 334445555544 36899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----ccccccee
Q psy8722 163 RGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVV 202 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 202 (223)
.|++++++.|.+.+.+....++.+...+.+.+ +.+|++..
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999988776555554444433332 44555543
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=136.73 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-----------LGP 82 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 82 (223)
.++|+++|++|+|||||++++.+.... ....++.+.......+..++ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999865432 23334444444444455555 3477999999653311 012
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH-HHHHHHHh----CCcEEEe
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED-AEKYAQSV----GAVHFHT 157 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 157 (223)
..+..+|++++|+|..++.+..... ++..+. ..+.|+++++||+|+........+. ...+...+ ..+++.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 2457899999999999887654432 222222 2358999999999986543222222 22233333 3589999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
||+++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=128.09 Aligned_cols=158 Identities=20% Similarity=0.330 Sum_probs=121.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..++++|+++|-.++||||++..|..+... ...||+|+.+ ..+.+.+ +.+.+||.+|+++.+.+|..||....++
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCc-ccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceE
Confidence 367999999999999999999999855443 3357777655 3444444 8899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-----cEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-----VHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i 165 (223)
|||+|..+....+..+.-+..+ ...--...+++|.+||.|+.+.. ..+++..+...-.+ -+..+++.+++|+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGL 166 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhH
Confidence 9999999886666665422222 22112468999999999997765 56777776654433 2456889999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
.+.|.|+.+.+
T Consensus 167 ~eglswlsnn~ 177 (180)
T KOG0071|consen 167 KEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=155.49 Aligned_cols=162 Identities=19% Similarity=0.135 Sum_probs=113.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccc---ccccccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALG---PIYYRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~ 88 (223)
..|+|||.+|||||||+|+|+.........+.++.......+.+.+ ..+.+||+||.... ..+. -..+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4899999999999999999996554444445555555555566655 57889999995321 1111 1235679
Q ss_pred CEEEEEEECCC----HHHHHHHHHHHHHHHHHcC-----------CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 89 NGAVLVYDITD----EDSFEKVKNWVKELKKMLG-----------NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 89 d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~-----------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+++|+|+|+++ +..+..+..|..++..... .+.|++||+||+|+.+.... .+.........+.+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 99999999975 2355556656655554321 35899999999998654332 22333344455789
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
++.+||+++.|+++++.+|.+.+...+
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999886654
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-23 Score=149.15 Aligned_cols=168 Identities=33% Similarity=0.521 Sum_probs=146.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE-EEEEEEeCCCccccccccccccccCCEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR-LNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..-++++|+|..|+|||+++.+++...++..+..+++.++.-+...+++.. +++++||+.|++++..+...|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 557899999999999999999999999999999999999988887777655 4889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccC-CHHHHHHHHHHhCC-cEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSVGA-VHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 165 (223)
.+|||++...+|+....|.+.+..... ..+|+++..||+|++..... ......++++++|+ ..+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 999999999999999999999876542 35778999999998544322 34778889999998 6999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKA 180 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (223)
.|+-..+++.++..-
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999887664
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=161.11 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=116.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++|+++|+.++|||||+++|++ ..++++...+++.++....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 5799999999999999999985 344455566777777666666666 67899999999999888888889999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC--CHHHHHHHHHHh----CCcEEEecCCCC
Q psy8722 93 LVYDITD---EDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV--MQEDAEKYAQSV----GAVHFHTSAKMN 162 (223)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 162 (223)
+|+|+++ +.+++.+. .+.. .++| +++++||+|+.+...+ ..+++.+++... +.+++.+||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 44444432 2222 2567 9999999998654322 223455555554 468999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRML 177 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~ 177 (223)
.|++++++.|.+.+.
T Consensus 152 ~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 152 QGIGELKKELKNLLE 166 (581)
T ss_pred CCchhHHHHHHHHHH
Confidence 999999988876543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=141.24 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=105.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RF 77 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~ 77 (223)
+.......++|+++|++|+|||||+++|.+..+.....++.+.+........ ...+.+|||||.. .+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3444567789999999999999999999976654444444444332222222 2578999999942 22
Q ss_pred cccccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHHhCC
Q psy8722 78 HALGPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQSVGA 152 (223)
Q Consensus 78 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 152 (223)
......++.. .+++++|+|..++.+.... .+...+.. .++|+++++||.|+....+. ..+.+.+.......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2333344443 4678889998775433221 11122222 36899999999998543221 12334444444467
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++++|++++.|++++++.|...+.
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999887654
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-20 Score=160.11 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=111.5
Q ss_pred CCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccCCEEEE
Q psy8722 22 GEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY--RMSNGAVL 93 (223)
Q Consensus 22 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 93 (223)
|++|+|||||+|++++......+.++.+.+.....+.+++. .+.+|||||++.+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999987766666777777776666767664 5789999998876543 22232 47899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+|.++.+. ...+... ....++|+++++||+|+.+.+.+. .+.+++++.++++++++||++|.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~q---l~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQ---LLELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHH---HHhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 1222222 223478999999999986555443 456788888999999999999999999999998
Q ss_pred HHH
Q psy8722 174 QRM 176 (223)
Q Consensus 174 ~~~ 176 (223)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=142.24 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=99.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEEC---------------------------C----
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNIA---------------------------G---- 61 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (223)
++|+++|+.|+|||||+..+..... ........+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5899999999999999999974311 11111111111111111110 1
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--C
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--M 139 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 139 (223)
....+.||||||++.+.......+.++|++++|+|+.++.........+..+... ...|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999888777777778899999999998742111111122222221 12478999999998643211 1
Q ss_pred HHHHHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 140 QEDAEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.++..+++... +.+++.+||++|.|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23334444432 56799999999999999999988654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=161.58 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=113.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+..+|+++|+.++|||||+++|....+......+++.+.....+.+++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45778999999999999999999987766655555555555555555665 5688999999999999888888999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHH-------HHHHhC--CcEEEecCCCC
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEK-------YAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 162 (223)
|+|+|+++......... +......++|++|++||+|+.+.. .+.+.. +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999988422222222 222223468999999999985432 222211 122333 68999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|++++|++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999999875
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=134.06 Aligned_cols=155 Identities=20% Similarity=0.151 Sum_probs=101.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYY 85 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 85 (223)
..+|+++|++|+|||||++++.+........ +..+...... ........+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999998765432211 1111111111 1222336788999999654322 223457
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRG 164 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 164 (223)
..+|++++|+|+.++.+ .....+...+... +.|+++++||+|+........+....+....+ .+++.+|++++.|
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 88999999999998721 1112223333332 57999999999986433333344445555443 5889999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 165 IEEMFLELSQR 175 (223)
Q Consensus 165 i~~~~~~i~~~ 175 (223)
++++++.|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=160.94 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=112.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEE--EEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNK--KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+..+|+++|+.++|||||+++|....+......+.+.+.... .+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4667999999999999999999997766655444444433222 23333455789999999999999998889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH-------HHHhC--CcEEEecCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-------AQSVG--AVHFHTSAKM 161 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 161 (223)
+|+|+|+++.........| ......++|+++++||+|+.... .+.+.+. ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999884322222222 11223468999999999986432 2222222 22233 5899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQR 175 (223)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (223)
|.|+++++++|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999988765
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=138.11 Aligned_cols=117 Identities=24% Similarity=0.307 Sum_probs=86.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC-CEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS-NGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 95 (223)
+|+++|++|+|||+|+++|....+...+.++ ............+....+.+||+||+.++...+..+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999987776554333 2322222222223346789999999999988888888998 9999999
Q ss_pred ECCCH-HHHHHHHHHHHHHHH---HcCCCCeEEEEEeCCCccc
Q psy8722 96 DITDE-DSFEKVKNWVKELKK---MLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~ 134 (223)
|+.+. .++..+..|+..+.. ....++|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677776665544322 1235799999999999854
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=138.23 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 81 (223)
....++|+++|++|+|||||+|++.+..+.....++.+.+.....+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46788999999999999999999997654333334443333333333333 58899999943 222333
Q ss_pred ccccc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHHHHHHHHHHhC--CcE
Q psy8722 82 PIYYR---MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQEDAEKYAQSVG--AVH 154 (223)
Q Consensus 82 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~ 154 (223)
..+++ .++++++|+|++++.+.... .++..+.. .++|+++++||+|+.... ....+++++.+...+ .++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 34444 35899999999885444443 22233332 368999999999985332 112344455555543 479
Q ss_pred EEecCCCCCCHH
Q psy8722 155 FHTSAKMNRGIE 166 (223)
Q Consensus 155 ~~~Sa~~~~~i~ 166 (223)
+.+||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=133.97 Aligned_cols=164 Identities=27% Similarity=0.499 Sum_probs=142.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...++++++|..|.||||++++++...|...+.+|.|.........-+...+.+..|||.|++.+..+...++-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999999999999999999999887776655555699999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
++||+..+-++.++..|...+.+.++. +|++++|||.|..... .......+-...++.+|++|++.+-|...-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 999999999999999999999888764 9999999999975443 1233344556677899999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
...+...
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9988443
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=156.69 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=113.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCC-----CC------ccccceeEEE--EEEEE---CCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNE-----KH------ITTLQASFLN--KKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~-----~~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~ 74 (223)
++--||+++|+.++|||||+.+|+.. .+.. .. ....+.++.. ..+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34459999999999999999999842 2111 10 0112222222 22222 455689999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV- 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (223)
.+|...+..++..+|++|+|+|+++.........|..... .++|+++|+||+|+.... ......++...+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 9998888889999999999999998755555555544322 368999999999985432 122234455556654
Q ss_pred --EEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 154 --HFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 154 --~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++.+||++|.|+.+++++|.+.+..
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887643
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=138.41 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=105.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC------------------CccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
+.++|+++|+.++|||||+++|+....... .....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999983332111 11222333333444311333577888999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHH-HHHHHhC--
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAE-KYAQSVG-- 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~~-- 151 (223)
.|.......+..+|++|+|+|+.+..... ....+..+.. .++|+++++||+|+...+.. ..++.. .+.+..+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 98888878889999999999998753322 2222333333 36889999999998622110 112222 3333332
Q ss_pred ----CcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 152 ----AVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 152 ----~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++.+||.+|.|+.++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4799999999999999999888765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=150.94 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=110.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----------- 80 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 80 (223)
...++|+++|.+|+|||||+|+|++.. ......++++.+.....+..++ ..+.+|||||..+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 457999999999999999999999543 3444456666665555555555 45678999995432111
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH----hCCcEEE
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----VGAVHFH 156 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (223)
...+++.+|++|+|+|+.++.+..... +...+.. .+.|+++++||+|+..... ..+...++... ..+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 123568899999999999876655543 2222322 3689999999999863321 11111122222 2468999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+||+++.|+.++++.+.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999887655443
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=151.11 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=105.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 86 (223)
.+|+++|.+|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999996553 233355666666666666766 6789999999876 1222345678
Q ss_pred cCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 87 MSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
.+|++|+|+|+.++.+.. .+..|+. . .+.|+++|+||+|+... .+...++ ..+++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998853332 2333433 2 26899999999996432 1222333 34566 48999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|+.++++.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=151.27 Aligned_cols=151 Identities=22% Similarity=0.230 Sum_probs=107.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPIYYRM 87 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 87 (223)
+|+++|.+|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999996553 233456666666666666766 458899999963 233344556789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|..+..+.... .+...+++ .++|+++|+||+|+...... ..+ +..+++ +++.+||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875433321 22223333 26899999999998644321 122 345666 79999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++++.+.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999998877643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-19 Score=155.43 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=113.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------cc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG----------PI 83 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~ 83 (223)
+.++|+++|++|+|||||+|++++........++.+.+.....+..+ ...+.+||+||...+.... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHH
Confidence 35799999999999999999999766555545655555444444443 4678899999987664321 12
Q ss_pred c--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 Y--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+ ...+|++++|+|+++.+.. ..|...+.+ .++|+++++||+|+.+.+.+ ..+.+++.+.++++++.+|+.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2 2478999999999885432 223333433 36899999999998655444 4567788889999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
++|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999998887754
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=129.85 Aligned_cols=151 Identities=18% Similarity=0.150 Sum_probs=102.3
Q ss_pred EECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------ccccccCCEE
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG-------PIYYRMSNGA 91 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~~~~~d~~ 91 (223)
++|++|+|||||++++.+.... .....+.+............ ...+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999865444 33333333333333333321 3578999999977654333 3467899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH---HHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE---DAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|..+........ |..... ..+.|+++++||.|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987665554 233332 247899999999998554322111 112223334568999999999999999
Q ss_pred HHHHHHH
Q psy8722 169 FLELSQR 175 (223)
Q Consensus 169 ~~~i~~~ 175 (223)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-19 Score=156.50 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=112.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHAL-G 81 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 81 (223)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++.. +.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999996654 23445666666666666677754 56899999532 1111 1
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH-HHh----CCcEEE
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-QSV----GAVHFH 156 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~ 156 (223)
..+++.+|++++|+|+++..+.....- +..+.. .++|+++|+||+|+.+... .+...+.. ... ..+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999999877766543 333322 3689999999999854321 12222222 111 246789
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+||++|.|++++++.+.+.+......
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988764443
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=148.93 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCC-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFN-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+.++|+++|+.++|||||+.+|+. +... .+...+.+.+.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 357789999999999999999999974 2221 111234455554444444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
..+.+.|||+||++.|.......+..+|++++|+|+++..++..... +...+....+ ..++++++||+|+.+...
T Consensus 83 --~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 83 --DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred --CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHH
Confidence 44788999999999886666666789999999999998753311111 1111222222 357999999999854211
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 138 ---VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
...+++.+++...+ ++++++||++|.|+.+.+.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345566666665 4789999999999987553
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=148.16 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=103.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
..++.++|+++|++++|||||+++|+...- . ++..++++.+.....+..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 357789999999999999999999972211 1 111344555554444444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
+ .+.+.+|||||+++|.......+..+|++++|+|+++...+... ..++..+. ..+ ..|+++++||+|+.....
T Consensus 82 ~--~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~-~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 82 D--KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG-INQLIVAINKMDAVNYDEK 157 (425)
T ss_pred C--CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC-CCeEEEEEEccccccccHH
Confidence 4 47889999999988866555567889999999999873122111 12222222 221 246899999999864211
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 138 ---VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
...+++.+++...+ .+++.+||++|.|+.+...
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12245556665555 4689999999999987553
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=131.77 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----c---ccccccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH----A---LGPIYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~d 89 (223)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999996654333334444444455555666 578899999965332 1 1234678999
Q ss_pred EEEEEEECCCHH-HHHHHHHHHHHH-----------------------------------------HHH-----------
Q psy8722 90 GAVLVYDITDED-SFEKVKNWVKEL-----------------------------------------KKM----------- 116 (223)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~----------- 116 (223)
++++|+|++++. ....+...+..+ ...
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 333332222110 000
Q ss_pred -----------cC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 117 -----------LG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 117 -----------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.+ ..+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 00 1368999999999842 3444444443 4689999999999999999988754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=152.41 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=107.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (223)
....+|+++|.+|+|||||+|+|++... .....++.+.+.......+++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 4457899999999999999999996543 233446666665555555555 4688999999653 1223344
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
++..+|++|+|+|+++.-.... ..|...++. .++|+++|+||+|+.... ....++. .++. ..+.+||++|
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 6789999999999986422111 234444543 468999999999975321 1222222 2333 4678999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|+.+++++|++.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988744
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=148.21 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=102.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA----------------GKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~ 79 (223)
--|+++|++++|||||+++|.+..+......+++.+.....+..+ .....+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 469999999999999999999776654433322222111111110 0011388999999999999
Q ss_pred ccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC------------CHHH--
Q psy8722 80 LGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV------------MQED-- 142 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~-- 142 (223)
++..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...+.. ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 88889999999999999987 45544433 2222 36899999999998532110 0000
Q ss_pred ----------HHHHHH------------Hh--CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 143 ----------AEKYAQ------------SV--GAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 143 ----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
..++.. .+ .++++.+||++|+|+++++.+|.....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 011111 11 257899999999999999998866543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=122.26 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=120.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCC--------CCCCc----cccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--------NEKHI----TTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
.......||+|+|+.++||||+++.+..... ...+. .|+..++.... +.+ ...+.+++||||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHH
Confidence 3456788999999999999999999986553 11111 12233332222 222 256889999999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh--CCcEE
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV--GAVHF 155 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 155 (223)
.-+|..+.+++.++|+++|.+.+..+ .....+..+.... .+|++|++||.|+.+.+ +.+.+.++.... ..+.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999888 5555566555543 28999999999997765 566666666554 78999
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998887765
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-19 Score=126.42 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=122.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC---CCC----CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED---KFN----EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPI 83 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 83 (223)
..+..+.|+++|..++|||||+.+.... .+. ..-.+|.|... ..+.+.+ ..+.+||..|++...++|..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 3466789999999999999999887521 111 12234444444 4444443 57899999999999999999
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH---Hh---CCcEEE
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKEL-KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ---SV---GAVHFH 156 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~~ 156 (223)
||..+|++|+++|+.+++-|+....-+..+ ......++|+++.+||.|+++.- ...+++..+. .. ..++..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCcccc
Confidence 999999999999999998888877644443 33344689999999999986653 3444444433 22 247889
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
+||.+|+||.+...|+...+.+.
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999887655
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=139.47 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=117.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 83 (223)
...++|+++|.||||||||+|.|. .........+++++++....+.++| +.+.+.||+|........ ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 456899999999999999999999 5556678899999999999999999 667788999965433322 33
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
.+.+||.+++|+|.+.+.+-.... . +. ....+.|+++|.||.|+....... ......+.+++.+|+++++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~-~---~~-~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA-L---IE-LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGE 362 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH-H---HH-hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecCcc
Confidence 568899999999999863222221 1 11 334568999999999996654311 1122234468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEK 179 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (223)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999988887666
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=125.33 Aligned_cols=167 Identities=18% Similarity=0.226 Sum_probs=122.4
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYY 85 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (223)
++....++.+.+|+++|--|+||||++-++...+.. ...|+++..... +..++..+++||..|+-.....|+.||
T Consensus 9 f~~L~g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy 83 (182)
T KOG0072|consen 9 FKALQGPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYY 83 (182)
T ss_pred HHHhcCCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHh
Confidence 345566779999999999999999999888754443 335777765433 233568999999999999999999999
Q ss_pred ccCCEEEEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSA 159 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa 159 (223)
.+.+++|||+|.+|.+....... ++..+....-.+..++|++||.|....- ...++... .+..-+.++++||
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA 161 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSA 161 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeecc
Confidence 99999999999999876655443 3333433322457889999999975432 12222111 1222256899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+|+|++.+++|+.+.+..+
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999877643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-18 Score=137.47 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=122.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----------ccccc-c
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----------RFHAL-G 81 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 81 (223)
..++|+++|.||+|||||+|+++ .........++++++.....+.++++.+. ++||+|.. .|... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999 55556777889999998889999897655 55999933 22211 1
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH----HHhC-CcEEE
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA----QSVG-AVHFH 156 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~~ 156 (223)
...+..+|.+++|+|+.++-+-+... ....+. ..+.++++++||+|+.+......++.++-. ...+ ++.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 33467899999999999976654433 222222 247899999999998654333333332222 2222 47899
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~ 190 (223)
+||.++.++.++|+.+.................+
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~ 364 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLLNR 364 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHHHH
Confidence 9999999999999999887766655544444333
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=131.77 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=94.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-C------------------------------CCccccceeEEEEEEEECCeEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-E------------------------------KHITTLQASFLNKKLNIAGKRLN 65 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
||+++|++|+|||||+++|+...-. . +.....+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 6899999999999999999732211 1 0113334444444444444 46
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC----CHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV----MQE 141 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 141 (223)
+.+|||||++.|.......+..+|++|+|+|++++..-.. ......+.. .+ ..++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-LG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-cC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 7899999998876666667889999999999987532211 121222222 11 2357888999998542211 123
Q ss_pred HHHHHHHHhCC---cEEEecCCCCCCHHHH
Q psy8722 142 DAEKYAQSVGA---VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 142 ~~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 168 (223)
+..+++..+++ +++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44555666664 4899999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=148.59 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
||+++|+.++|||||+++|+. +.+.... ....+.++......+......+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999984 3332211 11123333333333333347888999999999988888
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHH-------HhCCcE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQ-------SVGAVH 154 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 154 (223)
.++..+|++++|+|+.+. .......|+..+.. .++|+++++||+|+.+.+.. ..+++.+++. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 899999999999999874 23344455555544 36899999999998654321 1233344432 235689
Q ss_pred EEecCCCCC----------CHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNR----------GIEEMFLELSQRML 177 (223)
Q Consensus 155 ~~~Sa~~~~----------~i~~~~~~i~~~~~ 177 (223)
+.+||++|. |+..+|+.|++.+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 999999995 78888888877654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-18 Score=145.13 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=110.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh--CCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE--DKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
+-.||+++|+.++|||||+++|+. +.+.... ..+.+.++......+....+.+.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999985 3332221 22345555555555555568899999999999998
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHH-------hC
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQS-------VG 151 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 151 (223)
.+..+++.+|++|+|+|+.+..... ...++..+.. .++|.++++||+|+...+.. ..+++.++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 8899999999999999998753222 2222232222 36899999999998654321 12333333322 34
Q ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNR----------GIEEMFLELSQRML 177 (223)
Q Consensus 152 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 177 (223)
++++.+||.+|. ++..+++.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 678999999998 46777766665553
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=118.10 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=115.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+.+++||+++|-.++|||||+..|.+... ....+|.|+. .+.+...+ .+.+.+||++|+...+..|..||.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 3457899999999999999999999875433 2334555544 45555544 488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--------CcEEEecCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--------AVHFHTSAK 160 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 160 (223)
++|||+|.+|..-|+.+..-+.+ +....-..+|++++.||.|+-.+.. . .+.+.+.+ ..+-++|+.
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~---eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--V---EEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--h---HHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999999888887664333 4444445799999999999743322 2 22233322 235679999
Q ss_pred CCCCHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQ 174 (223)
Q Consensus 161 ~~~~i~~~~~~i~~ 174 (223)
+++|+..-.+|+..
T Consensus 163 s~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQS 176 (185)
T ss_pred cccCccCcchhhhc
Confidence 99999888877754
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=124.37 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=97.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHALGPIYYR 86 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 86 (223)
.|+++|++|+|||||++.+.+........++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555544455555544444444443 788999999432 2223333333
Q ss_pred ---cCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHH--HhCCcEEEe
Q psy8722 87 ---MSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQ--SVGAVHFHT 157 (223)
Q Consensus 87 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (223)
+++++++++|..+.. ....+..|+... +.|+++++||+|+...... .......... ....+++.+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999998653 222233343322 4799999999998432211 1122222222 234578999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=142.32 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=102.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc----ccceeEEEEEEEE--CCeE-----E-----EEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT----TLQASFLNKKLNI--AGKR-----L-----NLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~G~~~ 76 (223)
.+...|+++|+.++|||||+++|.+......... +.+..+....... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456799999999999999999986554333222 2222222111100 0111 1 268999999999
Q ss_pred cccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC----C----------
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV----M---------- 139 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~---------- 139 (223)
|..++...+..+|++++|+|+++ +.++..+.. +.. .++|+++++||+|+...+.. .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888899999999999997 555554432 222 36899999999998422110 0
Q ss_pred --HH-------HHHHHHHHh---------------CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 140 --QE-------DAEKYAQSV---------------GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 140 --~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.+ +........ .++++.+||.+|.|+++++..+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 011111211 24689999999999999998876443
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=142.14 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=103.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEE------------------EEECC------eEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKK------------------LNIAG------KRLN 65 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~------------------~~~~~------~~~~ 65 (223)
++.++|+++|+.++|||||+++|...... ++.....+....... ...++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46899999999999999999999743221 111111111111000 00011 1357
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDA 143 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~ 143 (223)
+.+||+||+++|...+......+|++++|+|+++..........+..+... + ..|+++++||+|+...... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 889999999998877777778899999999999643111222222233222 1 2478999999998643211 12334
Q ss_pred HHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 144 EKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 144 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.++.... +.+++.+||+++.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444433 56899999999999999999988654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-18 Score=137.39 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=110.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---------ALGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 85 (223)
..|+++|.||||||||+|+|++... ..+..++++++.......+.+.. |.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 5799999999999999999995554 46778899999888888888855 7777999966322 1224457
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRG 164 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (223)
..||++|||+|....-+-.+- .....++. .++|+++|+||+|-. ..++...-...+|+ .++.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr~---~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPADE-EIAKILRR---SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHHh---cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 889999999999874433221 11122222 358999999999953 12333333445565 789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRML 177 (223)
Q Consensus 165 i~~~~~~i~~~~~ 177 (223)
+.++++.++..+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988874
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=141.19 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=101.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEE------------------C--C----eE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNI------------------A--G----KR 63 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~ 63 (223)
..++.++|+++|+.++|||||+.+|.+... ..+.....+.........+ + + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 456789999999999999999999964311 1111222222221110000 0 1 12
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHH----HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED----SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV- 138 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 138 (223)
..+.||||||++.|..........+|++++|+|+.++. +...+. .+... ...|+++++||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~--~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII--GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEEeeccccchhHH
Confidence 57899999999887665555556789999999999642 332222 22221 12468999999998653221
Q ss_pred -CHHHHHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 139 -MQEDAEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
..+++..++... +.+++.+||+++.|++++++.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 46899999999999999999887654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=143.50 Aligned_cols=153 Identities=21% Similarity=0.178 Sum_probs=105.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+-|+++|+.++|||||+++|++ ..+.++...+++.+.....+...+. ..+.+|||||+++|.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 3589999999999999999985 3344444455555554444433222 34789999999998777777788999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC--CHHHHHHHHHHhC---CcEEEecCCCCC
Q psy8722 93 LVYDITDE---DSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV--MQEDAEKYAQSVG---AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~ 163 (223)
+|+|+++. .+.+.+ ..+... ++| ++||+||+|+.+.... ..+++.+++...+ .+++.+||++|.
T Consensus 80 LVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 80 LVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 99999873 333332 223222 345 5799999998543221 1234455555444 589999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|++++++.|.+..
T Consensus 153 gI~~L~~~L~~~~ 165 (614)
T PRK10512 153 GIDALREHLLQLP 165 (614)
T ss_pred CCHHHHHHHHHhh
Confidence 9999998887543
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-18 Score=131.81 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=130.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-ccccceeEEEEEEEECCeEEEEEEEeCCCccc------cc------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-ITTLQASFLNKKLNIAGKRLNLAIWDTAGQER------FH------ 78 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~------ 78 (223)
..+-++|+|||.||+|||||.|.+++.+...-. ...++..-.... +.....++.|+||||.-. +.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi--~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI--ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE--EecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 367889999999999999999999977665433 222222222222 223336899999999221 11
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc-------------cCCH--HHH
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR-------------TVMQ--EDA 143 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~--~~~ 143 (223)
........+||.+++++|+++....-.- ..+..+.... .+|-+++.||.|....+ .+.. .+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 1112345779999999999974322111 1233344332 57999999999963221 1111 111
Q ss_pred -HHHHHH---------hCC----cEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccceeeec
Q psy8722 144 -EKYAQS---------VGA----VHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR----GSMRRNVVVVE 205 (223)
Q Consensus 144 -~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 205 (223)
+++... .|. .+|.+||..|+|++++.++|+.++.....+++.+...+.+.+ +.+|++.+...
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~ 303 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHL 303 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhC
Confidence 111110 011 378899999999999999999999999988888777766666 66899999999
Q ss_pred CCCCCCCC
Q psy8722 206 DEDLPTSS 213 (223)
Q Consensus 206 ~~~~~~~~ 213 (223)
++++||.=
T Consensus 304 pqEVPY~l 311 (379)
T KOG1423|consen 304 PQEVPYNL 311 (379)
T ss_pred ccccCcce
Confidence 99999853
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=126.13 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=78.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC--------CC--------ccccceeEEEEEEEECCeEEEEEEEeCCCccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNE--------KH--------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (223)
||+++|+.|+|||||+++|+...-.. .. ....+..+......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 68999999999999999997432110 00 011122222222333333478899999999998888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..+++.+|++++|+|..+.... ....|+..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999986433 33444444443 368999999999975
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=123.37 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=95.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
+.++|+++|+.++|||||+++|+.... ..+.....+.+.. ...+......+.++||||+..+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHH
Confidence 368999999999999999999974310 0111223333332 3333333456778899999888
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHhC--
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSVG-- 151 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (223)
.......+..+|++++|+|+.....-. ....+..+.. .++| +++++||+|+...... ..+++.++....+
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 776777788999999999998743221 2222333333 2566 7789999998432211 1234555555544
Q ss_pred ---CcEEEecCCCCCCHH
Q psy8722 152 ---AVHFHTSAKMNRGIE 166 (223)
Q Consensus 152 ---~~~~~~Sa~~~~~i~ 166 (223)
++++.+||.+|.|+.
T Consensus 155 ~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 155 GDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccCCeEEEeeCccccCCC
Confidence 579999999999864
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=128.87 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=92.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEECCeEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNIAGKRLN 65 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
+|+++|+.++|||||+.+|+.... . .+....++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 689999999999999999862111 0 11123334444444455554 67
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc--cc
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---F---EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ--RT 137 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 137 (223)
+.+|||||+..+.......+..+|++|+|+|+.+... + ......+..... . ...|+++++||+|+... ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-L-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-c-CCCeEEEEEEccccccccccH
Confidence 8899999988776666666788999999999998421 1 111121222222 2 13689999999998632 11
Q ss_pred C----CHHHHHHHHHHhC-----CcEEEecCCCCCCHH
Q psy8722 138 V----MQEDAEKYAQSVG-----AVHFHTSAKMNRGIE 166 (223)
Q Consensus 138 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 166 (223)
. ..+++..+....+ .+++.+||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 1123333444443 469999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=135.21 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.++|+++|+.++|||||+++|+.... ..+.....+.+. ....+......+.+|||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 57789999999999999999999974211 111123333333 333343344567899999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCC---HHHHHHHHHHhC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVM---QEDAEKYAQSVG 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 151 (223)
+|.......+..+|++++|+|+.+...... ..++..+.. .++| +++++||+|+.+..... .+++.+++...+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 887666666688999999999987422221 222233332 2577 67889999986332211 234555555555
Q ss_pred -----CcEEEecCCCCC
Q psy8722 152 -----AVHFHTSAKMNR 163 (223)
Q Consensus 152 -----~~~~~~Sa~~~~ 163 (223)
++++.+||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 163 FPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCcCCccEEEeeccccc
Confidence 479999999983
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=115.92 Aligned_cols=135 Identities=24% Similarity=0.261 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (223)
||++||+.|+|||||+++|.+.... +..|....+ .+ .++||||.- .+.........+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999875542 223322222 12 246999943 22222333446899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 171 (223)
++.|++++.+.-. ..+...+ +.|+|-|+||+|+... ....+.++++.+..|+ ..|++|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998653211 1233333 4799999999999732 2256778888888888 5799999999999999987
Q ss_pred HH
Q psy8722 172 LS 173 (223)
Q Consensus 172 i~ 173 (223)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=139.58 Aligned_cols=171 Identities=18% Similarity=0.322 Sum_probs=127.2
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
..+...+.+||+++|+.|+||||||-++....+++.-.+-...-..+ ..+....+...+.|++....-......-++.
T Consensus 2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhh
Confidence 45567789999999999999999999999988876643322211112 3333344567888998655555555667899
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHH-HHHHHHHhC-C-cEEEecCCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKN-WVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQED-AEKYAQSVG-A-VHFHTSAKM 161 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~ 161 (223)
||++.+||+.+++.+++.+.. |+..+++..+ .++|+|+||||+|.......+.+. ...+...+. + ..++|||++
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 999999999999999999875 9999999774 579999999999986655443333 333333332 1 368999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (223)
..++.++|...-.+++...
T Consensus 160 ~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPT 178 (625)
T ss_pred hhhhHhhhhhhhheeeccC
Confidence 9999999999888876554
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=125.26 Aligned_cols=113 Identities=24% Similarity=0.264 Sum_probs=78.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCC-----------------ccccceeEE--EEEEEE---CCeEEEEEEEeCCCc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKH-----------------ITTLQASFL--NKKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~ 74 (223)
+|+++|+.++|||||+++|+........ ....+.++. ...+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999854332210 011112221 112211 355688999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..+......++..+|++++|+|+.+..+... ..|+..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987655432 334333322 358999999999974
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=129.17 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=119.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (223)
..-..|.++|.+|+|||||+|+|++.........+.+.+-+.+.+.+.+ ...+.+.||.|-- .|.+..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4566899999999999999999997777766677777777778887775 2456777999922 1222222
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
-...+|.++.|+|++++.....+..-...+.......+|+++|.||+|+..... .........-..+.+||+++.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 236799999999999998877777777777776556699999999999643322 111122221158999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++.+++.|.+.+....
T Consensus 343 gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 343 GLDLLRERIIELLSGLR 359 (411)
T ss_pred CHHHHHHHHHHHhhhcc
Confidence 99999999999887554
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=133.80 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+. ..+.++.....+.||||||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCc
Confidence 4467899999999999999999999973210 111123344443 3334444446788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccCC---HHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTVM---QEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~ 149 (223)
+++|..........+|++++|+|+.+...... .+.+..+.. .++|.+ +++||+|+.+..... .+++.+++..
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99887655555678899999999987422221 122222332 256655 689999985432211 2356666666
Q ss_pred hC-----CcEEEecCCCCC
Q psy8722 150 VG-----AVHFHTSAKMNR 163 (223)
Q Consensus 150 ~~-----~~~~~~Sa~~~~ 163 (223)
++ ++++.+|+.++.
T Consensus 161 ~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred cCCCccCccEEECcccccc
Confidence 65 689999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=125.80 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=102.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-----LGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 90 (223)
||+++|++++||||+.+.+..+..+.+.. -..+.+.....+... ..+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999988777554443321 122333333333322 336899999999875543 34667899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH--cCCCCeEEEEEeCCCccc--cccCC----HHHHHHHHHHhC---CcEEEecC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKM--LGNDICLTIAGNKIDLEK--QRTVM----QEDAEKYAQSVG---AVHFHTSA 159 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~----~~~~~~~~~~~~---~~~~~~Sa 159 (223)
+|||+|+...+-.+.+..+...+... ..++..+.++++|+|+.. .+... .+.+.+.+...+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999544444444444433332 346899999999999732 22111 233444445555 67888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
.+ +.+.++|..+++.+.+.....
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHH
Confidence 86 689999999999988765443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=132.98 Aligned_cols=155 Identities=23% Similarity=0.220 Sum_probs=119.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL------GPIYY-- 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-- 85 (223)
+..+|+++|+||+|||||+|++++........++.+.+.....+..+++. +.+.|.||-...... ...++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34679999999999999999999888888888999999888888888865 667799995433221 12232
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.++|++|-|+|+++-+.--.+ .++. .+-+.|++++.|+.|....+.+ .-+.+++.+.+|+|++.++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl--tlQL----lE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL--TLQL----LELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH--HHHH----HHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCH
Confidence 467999999999986532221 2222 2237899999999998655443 56678889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++...+.+...
T Consensus 153 ~~l~~~i~~~~~ 164 (653)
T COG0370 153 EELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHHhcc
Confidence 999998876443
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=131.83 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=96.8
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.-+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+. ....++.....+.|+|||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCP 83 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECC
Confidence 34557889999999999999999999985210 011123333333 233333334567899999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccC---CHHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTV---MQEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~ 148 (223)
|++.|.......+..+|++++|+|+.+.... ....++..+.. .++|.+ +++||+|+...... ..+++..++.
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 9988766666667889999999999874322 22233333332 357755 57999998532211 1234555666
Q ss_pred HhC-----CcEEEecCCCCCC
Q psy8722 149 SVG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 149 ~~~-----~~~~~~Sa~~~~~ 164 (223)
.++ ++++.+|+.++.+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 554 5789999999854
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=123.27 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=78.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCc---------c-----------ccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHI---------T-----------TLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
-+|+++|++|+|||||+++|+...-..... . ..+..+......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997321110000 0 01222333333444445789999999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+|.......++.+|++|+|+|+.+.... ....++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8877677788999999999999875322 22233333322 36899999999997554
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=122.96 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-c-ccccc-------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-R-FHALG-------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~-~~~~~-------~~~ 84 (223)
....|+|.|+||||||||++.++.........|+++..+....+...+ ..++++||||.- + ....+ ...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 466899999999999999999997777777778887777777777766 567788999921 1 11111 112
Q ss_pred cccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 85 YRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
-+-.++++|+||.+.. .+.+....++..+...+. .|+++|+||.|+.+... .++........+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 2346889999999874 456777778888888774 79999999999865443 3444444444444 478888988
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (223)
+.+++..-..+.....+.
T Consensus 321 ~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 321 GCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhhHHHHHHHHHHHhhch
Confidence 999988887777765544
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=120.95 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--CCC--------------CccccceeEEEEEEEEC--------CeEEEEEEEeCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF--NEK--------------HITTLQASFLNKKLNIA--------GKRLNLAIWDTA 72 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (223)
+|+++|+.++|||||+.+|+.... ... .....+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999984321 110 01111222222222232 346889999999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
|+..|......+++.+|++++|+|+.+........ .++.....++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~----~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET----VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH----HHHHHHHcCCCEEEEEECCCcc
Confidence 99999998899999999999999999875544322 2222223468999999999974
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-16 Score=129.00 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=97.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.++|+++|++++|||||+++|+.... ..+...+.+.+..... +......+.+.||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChH
Confidence 57789999999999999999999985311 1111233333333333 33333567788999998
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHhC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSVG 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (223)
.|.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+.... ..+++.++....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 877666667788999999999986432 222222333332 2567 7788999998543221 1234555555554
Q ss_pred -----CcEEEecCCCCCCH
Q psy8722 152 -----AVHFHTSAKMNRGI 165 (223)
Q Consensus 152 -----~~~~~~Sa~~~~~i 165 (223)
++++.+|+.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 57899999998754
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=117.09 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=94.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccc-----------------------cceeEEE---------------EEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITT-----------------------LQASFLN---------------KKLN 58 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~ 58 (223)
||+++|+.++|||||+++|..+.+....... .+.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999876554321100 0111000 0111
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
..+ ..+.++||||+++|.......+ ..+|++++|+|+..... .....++..+.. .++|+++++||+|+....
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 122 4577889999988865544434 36899999999887543 222233333333 368999999999974332
Q ss_pred cC--CHHHHHHHHHH--------------------------hCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 137 TV--MQEDAEKYAQS--------------------------VGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 137 ~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
.. ..+++.++... ...|++.+|+.+|+|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11 11222222221 123789999999999999987764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=113.22 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
+.+...-|+++|.+|||||||||+|++..--.-...|.|.+.....+.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3456679999999999999999999986644444556666666666666664 67889999 3344555
Q ss_pred ccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC----c
Q psy8722 81 GPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA----V 153 (223)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~ 153 (223)
...|+.. -.++++++|+..+-.-.+. +.++.+.. .++|++|++||+|.....+. .......+..++. .
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCcc
Confidence 5556543 5678889998875433222 22222222 47899999999997554322 2222333333332 2
Q ss_pred --EEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 154 --HFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 154 --~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++..|+.++.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 6778999999999999999887654
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=114.10 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=95.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccce-eEE--EEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA-SFL--NKKLNIAGKRLNLAIWDTAGQERFHALG-----PIYYR 86 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~ 86 (223)
++||+++|.+|+|||||+|.|.+.........+.+. ... ...+... ....+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999975543322222221 110 1111111 12368899999965332222 22357
Q ss_pred cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccccc-----------CCHHHHHHHH----HHh
Q psy8722 87 MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQRT-----------VMQEDAEKYA----QSV 150 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~----~~~ 150 (223)
.+|+++++.+. .+... ..|+..+... +.|+++|+||+|+..... ...++..+.+ ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888542 22222 3455555554 579999999999832211 0111222222 222
Q ss_pred C---CcEEEecCC--CCCCHHHHHHHHHHHHHHHHHH
Q psy8722 151 G---AVHFHTSAK--MNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 151 ~---~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+ .++|-+|+. .+.++..+.+.|+..+...+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 268889998 5789999999999988775443
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=120.91 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=92.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEK----------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----- 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 79 (223)
.++|+|+|.+|+|||||+|+|.+..+... ..+|.+.......+..++..+.+.+|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999997666443 234445555555666678778999999999332211
Q ss_pred ---------------------ccccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc--
Q psy8722 80 ---------------------LGPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-- 134 (223)
Q Consensus 80 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-- 134 (223)
.....+. .+|+++|+++.+... ..... +..+..... .+|+++|+||+|+-.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 1112233 467888888876421 11110 222332222 589999999999843
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
+.....+.+.+.+..+++++|.....
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22234566777888889998876653
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=130.60 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=101.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--C-----------------------------CCCccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--N-----------------------------EKHITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (223)
..+.++|+++|+.++|||||+.+|+...- . ++....++.+... ..+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEec
Confidence 46789999999999999999998863111 0 1112223333333 3334
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHH-------HHHHHHHHHHHHcCCCC-eEEEEEeCCCc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE-------KVKNWVKELKKMLGNDI-CLTIAGNKIDL 132 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl 132 (223)
.....+.++|+||+++|.......+..+|++|+|+|+.+. .|+ ...+.+..+.. .++ ++++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccC
Confidence 4446778889999999998888889999999999999873 232 22222222222 356 47888999997
Q ss_pred ccc-c-----cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 133 EKQ-R-----TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 133 ~~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
... . ....+++..++...+ ++|+.+|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 521 1 112355667777766 5699999999999864
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=117.28 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=110.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d 89 (223)
.|.+||-||+|||||++++...+......++++..-....+.+++.. .+.+=|+||.-+- ..+-..| +..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 67899999999999999999655555544554444434444454432 2566699994332 2222333 35689
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCCC
Q psy8722 90 GAVLVYDITDE---DSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (223)
.++||+|++.. ..++.+..+..+++.+.+ ...|.++|+||+|+.+.. ...+.+++..+.-+ ++.+||++++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999998 888888887777765533 468999999999985321 22246677777655 8999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
++.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999887653
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=124.25 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=120.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+..-|+++|+...|||||+..+............++.++.-..+..+. ..-.+.|+|||||+.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445689999999999999999998877777777888888777776642 1235677799999999999988888899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~ 163 (223)
+|+++++.--.+.++ .+......++|++|.+||+|..+. .++....-.+++|+ .++.+||++|+
T Consensus 84 LVVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999953332222 233344458999999999998743 34444444444453 58999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEK 179 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (223)
|+++++..+.-.....
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999998877654443
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=127.13 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=79.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC-----------C-------ccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK-----------H-------ITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~-----------~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
..+..+|+++|+.++|||||+++|+. +..... . ....+..+......+....+.+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 35677999999999999999999973 111000 0 001122232333333334477899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
||+.+|......+++.+|++|+|+|+.+.... ....++.... ..++|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccc
Confidence 99999888777788999999999999875321 2233333332 2478999999999974
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=127.40 Aligned_cols=149 Identities=14% Similarity=0.068 Sum_probs=98.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+.++|+++|+.++|||||+++|+.... ..+.....+.+.....+..++ ..+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence 357789999999999999999999984211 112223333333333333344 56788899999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHh
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSV 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~ 150 (223)
++|.......+..+|++++|+|+.+..... ..+++..+.. .++| +++++||+|+.+.... ..+++.++....
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 998777766778899999999998753222 2333333333 2577 7788999998542211 123455555554
Q ss_pred -----CCcEEEecCCCCCCH
Q psy8722 151 -----GAVHFHTSAKMNRGI 165 (223)
Q Consensus 151 -----~~~~~~~Sa~~~~~i 165 (223)
+++++.+|+.++.++
T Consensus 231 g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 231 EFPGDDIPIISGSALLALEA 250 (478)
T ss_pred CCCcCcceEEEEEccccccc
Confidence 357899999887543
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=122.89 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC----------------CCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
..+..+.++|+++|+.++|||||+++|+.... ..+...+.+.+.. ...+......+.++|||
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCP 83 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECC
Confidence 44567899999999999999999999985211 1111233333333 33343333567788999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccC---CHHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTV---MQEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~ 148 (223)
|+.+|.......+..+|++++|+|+.+... .....++..+.. .++|.+ +++||+|+...... ...++.++..
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 998877666667789999999999987532 222233333333 257875 58999998532211 1223444444
Q ss_pred HhC-----CcEEEecCCCCCC
Q psy8722 149 SVG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 149 ~~~-----~~~~~~Sa~~~~~ 164 (223)
..+ ++++.+||.++.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred hcCCCccCCcEEEeecccccC
Confidence 433 5789999998753
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=128.93 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC--CCC-------------------------------CCccccceeEEEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK--FNE-------------------------------KHITTLQASFLNKKLN 58 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~ 58 (223)
....+||+++|+.++|||||+.+|+... ... +...+++.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4667999999999999999999997322 111 0011223333333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.+ ...+.||||||++.|.......+..+|++++|+|+.+...-.....| ..+.. .+ ..++++++||+|+.+....
T Consensus 104 ~~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~-lg-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TE--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL-LG-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cC--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH-hC-CCceEEEEEeeccccchhH
Confidence 33 35788999999988866555557999999999999865321111111 11222 21 2478899999998643221
Q ss_pred CHH----HHHHHHHHhC----CcEEEecCCCCCCHHHHH
Q psy8722 139 MQE----DAEKYAQSVG----AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 139 ~~~----~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 169 (223)
..+ +...+....+ .+++.+||++|.|+.+.-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 122 2223333333 578999999999998653
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=124.75 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhC------C----------CCCCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVED------K----------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.....+.++|+++|+.++|||||+++|.+. . ..++...+++.+..... ++....++.++|||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtP 132 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCP 132 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECC
Confidence 444678999999999999999999999621 1 11222344455543333 43334567888999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCC---HHHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVM---QEDAEKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~ 148 (223)
|+.+|..........+|++++|+|+.+...-+ ..+.+..+.. .++| +++++||+|+....... .+++.++..
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 99887665555567799999999998653221 2222223332 3578 57889999985422211 112333433
Q ss_pred Hh-----CCcEEEecCC---CCCC
Q psy8722 149 SV-----GAVHFHTSAK---MNRG 164 (223)
Q Consensus 149 ~~-----~~~~~~~Sa~---~~~~ 164 (223)
.. .++++.+|+. ++.|
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCC
Confidence 32 2567888765 4554
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-15 Score=116.67 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC------------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF------------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (223)
||+++|++++|||||+++|+.... +.+....++.+.....+.+++ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 689999999999999999973211 111223334444444455555 678889999998888
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
..+...++.+|++|+|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888999999999999987532221 222233332 3689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=125.99 Aligned_cols=148 Identities=17% Similarity=0.171 Sum_probs=93.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC--CCC-------------------------------CCccccceeEEEEEEEECCe
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK--FNE-------------------------------KHITTLQASFLNKKLNIAGK 62 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (223)
+||+++|+.++|||||+.+|+... ... +.....+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999996221 111 1112223343333333444
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC---
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--- 139 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 139 (223)
..+.||||||+++|.......+..+|++++|+|+...........| ..+... + ..++++++||+|+.......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 5788999999998876666677899999999999875322211111 122221 1 23688999999985432211
Q ss_pred -HHHHHHHHHHhC---CcEEEecCCCCCCHHHH
Q psy8722 140 -QEDAEKYAQSVG---AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 140 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 168 (223)
.++...+....+ ++++.+||.+|.|+.+.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333344444 36999999999999863
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=118.44 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCc------------------cccceeEEEEEEEECCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHI------------------TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (223)
+|+++|++|+|||||+++++......... ...+.......+.+++ ..+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 68999999999999999997432111000 1111222223333444 678899999998877
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEE--E
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHF--H 156 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (223)
..+..++..+|++++|+|+++........-|. .+. ..++|.++++||+|..... ..+...++...++.+++ .
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 77788889999999999999865443333332 222 2368999999999986542 23334445455555433 3
Q ss_pred ecCCCCCC
Q psy8722 157 TSAKMNRG 164 (223)
Q Consensus 157 ~Sa~~~~~ 164 (223)
+...++.+
T Consensus 153 ip~~~~~~ 160 (268)
T cd04170 153 LPIGEGDD 160 (268)
T ss_pred ecccCCCc
Confidence 33444443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=125.16 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC--CCC-----------------------------CCCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED--KFN-----------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+.++|+++|+.++|||||+.+|+.. ... ++.....+.+..... +
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--F 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--E
Confidence 3578899999999999999999998741 111 111223333333333 3
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCc
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---F---EKVKNWVKELKKMLGNDIC-LTIAGNKIDL 132 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 132 (223)
......+.|+|+||+.+|.......+..+|++++|+|+.+... + ....+.+..+.. .++| +++++||+|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 3444677888999999998877777899999999999987421 1 122222222222 2555 6789999995
Q ss_pred cc--cc----cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 133 EK--QR----TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 133 ~~--~~----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
.. .. ....+++.+++...+ ++++.+|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 32 11 111234444444443 5689999999999864
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=122.74 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=117.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CC-------------CCccccceeEEEEEEE-ECCeEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE-------------KHITTLQASFLNKKLN-IAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~ 76 (223)
++--|+.+|-+-.-|||||..+|+.... .. +...+++..-....+. .++..+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5566899999999999999999973222 11 1123333333333332 246668999999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHHhCCcEE
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQSVGAVHF 155 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 155 (223)
|.......+..++++|+|+|++..-.-+.+-.++..+. .+..+|.|+||+|+...+... ..++.+++.....+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999998655444444444444 468899999999997765321 1223333344445789
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
.+||++|.|+.++++.|++.+....
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCC
Confidence 9999999999999999998875543
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=112.20 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=110.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----c---cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----H---ALGPIYYR 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~---~~~~~~~~ 86 (223)
-..+++++|.|++|||||++.|++........++++.+..+..+.+++ ..+++.|+||.-.- . ...-...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 356899999999999999999998777766667777777788888888 67888899983221 1 22345679
Q ss_pred cCCEEEEEEECCCHHH-HHHHHHHHHHHHHHcC---C-------------------------------------------
Q psy8722 87 MSNGAVLVYDITDEDS-FEKVKNWVKELKKMLG---N------------------------------------------- 119 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~------------------------------------------- 119 (223)
+||++++|+|+....+ .+.+.+.+...--..+ +
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999987554 3333332111110000 0
Q ss_pred -------------------CCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 120 -------------------DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 120 -------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
-+|.++|.||.|+.. .++...+.... .++.+||..+.|++++.+.|.+.+-
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 478899999999754 34444444444 7899999999999999998888763
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=130.70 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=81.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCC--------CCC----------ccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFN--------EKH----------ITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++..||+++|+.++|||||+++|+..... ... ....+.......+.++ ...+.+|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence 356789999999999999999999842210 000 0111222222233344 47889999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.++...+..+++.+|++++|+|+.+.........|.. +.. .++|+++++||+|+.
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh---cCCCEEEEEECCCCC
Confidence 99888888889999999999999998766554444432 222 368999999999974
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=100.74 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=70.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPIYYR 86 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 86 (223)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999996432 33334445555444555667754 468899994321 111222347
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
.+|++++|+|.+++.. +....++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 22333333342 46899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=130.27 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=96.7
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCC-------------------------------CccccceeEEEE
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEK-------------------------------HITTLQASFLNK 55 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~-------------------------------~~~~~~~~~~~~ 55 (223)
..+....++|+++|++++|||||+++|+...- ... ...+.+.+....
T Consensus 18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 34556789999999999999999999983221 100 011222233333
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+..++ ..+.|+||||++.|.......+..+|++++|+|+.+...-.. ......+... + ..+++|++||+|+...
T Consensus 98 ~~~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 98 YFATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-IRHVVLAVNKMDLVDY 172 (632)
T ss_pred EEccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-CCeEEEEEEecccccc
Confidence 333334 467789999998876555556789999999999976532211 1112222222 1 2578899999998542
Q ss_pred ccCCH----HHHHHHHHHhCC---cEEEecCCCCCCHHH
Q psy8722 136 RTVMQ----EDAEKYAQSVGA---VHFHTSAKMNRGIEE 167 (223)
Q Consensus 136 ~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 167 (223)
..... .++.++....++ +++.+||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11111 223344455554 589999999999985
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=116.15 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=54.7
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN---------------------IAG-KRLNLAIWDTAGQ- 74 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 74 (223)
|+++|.+++|||||+|+|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999997665433333333222211111 122 3367999999996
Q ss_pred ---cccccccccc---cccCCEEEEEEECC
Q psy8722 75 ---ERFHALGPIY---YRMSNGAVLVYDIT 98 (223)
Q Consensus 75 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 98 (223)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3444444443 79999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=123.44 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=102.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEE---------------EECCe-----------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKL---------------NIAGK----------- 62 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~~----------- 62 (223)
....++|.++|+...|||||+.+|++... .++.....+.+...... ..+..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 36789999999999999999999984322 22322222222111100 01000
Q ss_pred -----EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 63 -----RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 63 -----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
...+.|+|+||++.|..........+|++++|+|+.+........+.+..+.. .+ -.++++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cC-CCcEEEEEecccccCHHH
Confidence 13578889999998877766677899999999999974211112222222222 21 246889999999854221
Q ss_pred C--CHHHHHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 138 V--MQEDAEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 138 ~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. ..+++.++... .+.+++.+||.+|.|++.+++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 12333333332 356899999999999999988887644
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-15 Score=120.99 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=111.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccc--------c
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHAL--------G 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~ 81 (223)
.+..++|+++|+||+|||||+|.|. .........++++++.....+.++| +.+.+.||+|-.+ -... .
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 3556999999999999999999999 4455577789999998888888888 5677779999543 1111 1
Q ss_pred ccccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcC------CCCeEEEEEeCCCcccc-ccCCHHHHHHHHHHhC-
Q psy8722 82 PIYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLG------NDICLTIAGNKIDLEKQ-RTVMQEDAEKYAQSVG- 151 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~- 151 (223)
...+..+|++++|+|+... ++-..+.+.+........ ...+++++.||+|+... .+..... ..+....+
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccC
Confidence 2345789999999999442 222222333333322111 24688999999998554 1111111 11112122
Q ss_pred --C-cEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 152 --A-VHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 152 --~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+ ...++|+++++|+..+.+.+.+.+.....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 2 34569999999999999888887765544
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=113.13 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=119.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CC-------------CCccccceeEEEEEEEE---CCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE-------------KHITTLQASFLNKKLNI---AGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (223)
++--|..++-+-.-|||||..+++.... .. +...+++.......+.+ +|.++.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3445778899999999999999873222 11 22334444444444443 457899999999999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC--
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-- 152 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (223)
-+|.-.....+..|.++++|+|++..---+.+.+.+..+.. +.-++-|+||+||+.... ..-..++..-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 99988888888999999999999987655566655555544 678899999999976642 3344455566776
Q ss_pred -cEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 153 -VHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 153 -~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..+.+||++|.|+.++++.|++++...
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCC
Confidence 468899999999999999998877543
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=104.14 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=95.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC--ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-------c----cc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH--ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-------L----GP 82 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~ 82 (223)
++|+++|.+|+|||||+|.+++....... .+..+.........+++. .+.++||||-..... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999965443222 223333333444445564 577889999543211 0 11
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEeCCCccccccC------CHHHHHHHHHHhCCcE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLEKQRTV------MQEDAEKYAQSVGAVH 154 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 154 (223)
....++|++++|+++.+ .+- .....+..+...+++ -.+++++.|+.|.-....+ .....+.+.+..+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999887 221 122334444444432 2478888999885322110 1244556666666665
Q ss_pred EEec-----CCCCCCHHHHHHHHHHHHHH
Q psy8722 155 FHTS-----AKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 155 ~~~S-----a~~~~~i~~~~~~i~~~~~~ 178 (223)
+..+ +..+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 4444 34567777777777766655
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=122.75 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=82.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCC------------------CCCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN------------------EKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+.++-.||+++|+.++|||||+++|+...-. .+....++.+.....+.+++ ..+.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 3456779999999999999999999732110 01133445555555566665 567888999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
|+..+...+...+..+|++|+|+|+.+....... ..+..+. ..++|.++++||+|+.
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRI 138 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCC
Confidence 9988877778888999999999999876432222 2222222 2368999999999975
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=123.21 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC------------------CCccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE------------------KHITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
.+.++-.||+++|+.++|||||+++|+...-.. +....++.+.....+.+++ ..+.+|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence 345566799999999999999999997321110 0112334444444555555 67889999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (223)
||+.++.......++.+|++++|+|+.+........ ++..+.. .++|+++++||+|+.... ......++...++
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~ 156 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLG 156 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhC
Confidence 999988777788899999999999998864443322 2222322 368999999999986533 1233344444444
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=106.68 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=69.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccCCE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPI---YYRMSNG 90 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 90 (223)
.-.|+++|+.|+|||+|+.+|..+...+...+. ... ....+ ......+.++|+|||.+.+..... +..++.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457899999999999999999977554332222 111 12222 112235678899999987764433 4788999
Q ss_pred EEEEEECCC-HHHHHHHHH-HHHHHHHHc--CCCCeEEEEEeCCCccccc
Q psy8722 91 AVLVYDITD-EDSFEKVKN-WVKELKKML--GNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 91 ~i~v~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~ 136 (223)
+|||+|.+. ......+.+ ++..+.... ...+|++|+.||.|+...+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999975 334444433 444444332 4678999999999985543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=121.06 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC------------------CccccceeEEEEEEEECCeEEEEEEEeC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK------------------HITTLQASFLNKKLNIAGKRLNLAIWDT 71 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (223)
..+..+|+++|++++|||||+++|+. +..... .....+..+......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 45678999999999999999999862 211100 0011123333333444445578899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
||+..|.......+..+|++|+|+|+.+... .....++..... .++|+++++||+|+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998887777778899999999999987421 222334333332 4689999999999854
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=114.96 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=115.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..-|-++|+..-|||||+..|...........+++.++.-..+..... -.+.|.|||||..|..++..-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 34557889999999999999999877776665666666665555555422 45667799999999999988888899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---------cEEEecCCCCC
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA---------VHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~ 163 (223)
+|+.++|.-..+.+ +.+......++|+++.+||+|.++. ..+.+.+-...+|+ ..+.+||++|+
T Consensus 230 LVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999985433332 2344444458999999999997654 35555555554543 57999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++.+-+.+...
T Consensus 303 nl~~L~eaill~ 314 (683)
T KOG1145|consen 303 NLDLLEEAILLL 314 (683)
T ss_pred ChHHHHHHHHHH
Confidence 999887666543
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=109.58 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=104.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCcccc----ccccccc---cccC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERF----HALGPIY---YRMS 88 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 88 (223)
-|.+||-|++||||||+.+...+..-...+.++..-.--.+.+ .+. .|.+=|+||.-.- ..+-..| +..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~--sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE--SFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC--cEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 4678999999999999999955554443444433322223333 333 3555599993321 2222333 3557
Q ss_pred CEEEEEEECCCHH---HHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc-EEEecCCCC
Q psy8722 89 NGAVLVYDITDED---SFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV-HFHTSAKMN 162 (223)
Q Consensus 89 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (223)
.++++|+|++..+ ..++......++..+.. .+.|.+||+||+|+....+......+.+....+.. ++.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 8999999998654 35555555566655432 46899999999997554433333344444444443 222999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
+|++++...+.+.+.....
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999888888777653
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=102.74 Aligned_cols=155 Identities=24% Similarity=0.303 Sum_probs=111.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.=|++++|-.|+|||||++.|.++.... +.||.- -+...+.+.+ +++.-+|.+|+......+..|+..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456699999999999999999998766643 233322 2233455666 67888899999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH---HHh---C-----------CcE
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA---QSV---G-----------AVH 154 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~---~-----------~~~ 154 (223)
+.+|+.+.+.|...+.-++.+-... -...|+++.+||+|....- +.++..... +.. + +..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999998888776554443321 2468999999999986543 333322221 111 1 135
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+.||...+.+.-+.|.|+..
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 77888888888888877654
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=117.95 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=124.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----cccc-----cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALG-----PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~ 83 (223)
.+.-.++|+|.+++|||||+|.++......+..++++..+....+.+.. ...+++||||.-+. .... ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4566899999999999999999997766666666666666666655554 46777799993211 1111 11
Q ss_pred ccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH---HHHHHHHhCCcEEEec
Q psy8722 84 YYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED---AEKYAQSVGAVHFHTS 158 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~S 158 (223)
..+--.+++|++|+++. .|......++..+...+. +.|+|+|+||+|+-....+..+. ...+...-+++++++|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22334678999999884 456666667777776664 57999999999985554444322 3333444458999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8722 159 AKMNRGIEEMFLELSQRMLEKAQEFDLAKA 188 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 188 (223)
+.+.+|+..+....+++++..+-+..+...
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RVE~Klks~ 352 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARVEQKLKSE 352 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998877655543
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=108.75 Aligned_cols=161 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEE-EECCeEEEEEEEeCCCccc-------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL-NIAGKRLNLAIWDTAGQER-------FHALGPI 83 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 83 (223)
....++|+++|.+|+|||||||+|......+-..-..+.+...+.. .+++ -.+.+||+||-++ +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4578999999999999999999999554444333333333333332 2333 4688999999543 5555667
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc-------cCCHHHHHHH----------
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR-------TVMQEDAEKY---------- 146 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~---------- 146 (223)
++...|.++++.++.++.--.....|.+.+... .+.++++++|..|....- ......++++
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 788899999999999875333333344443332 237999999999974320 0111111111
Q ss_pred -HHHhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 147 -AQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 147 -~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++ -.|++.++...+.|++++...+++.+.
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 122 137888889999999999999998874
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=113.65 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=56.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEE---------------------EC-CeEEEEEEEeCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLN---------------------IA-GKRLNLAIWDTAG 73 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G 73 (223)
++|+++|.+|+|||||+|+|++........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999997666543334333322222211 11 1236789999999
Q ss_pred cc----ccccccccc---cccCCEEEEEEECC
Q psy8722 74 QE----RFHALGPIY---YRMSNGAVLVYDIT 98 (223)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (223)
.. ....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 233333444 78999999999997
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=111.45 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=101.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------------------------CCccccceeEEEEEEEE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE-----------------------------KHITTLQASFLNKKLNI 59 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 59 (223)
..++.++++++|+..+|||||+-+|+. +.++. +... |.++......+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEe
Confidence 457899999999999999999988762 22211 1112 33333334444
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHH-----HHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSF-----EKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
....+.+.|+|+||+.+|...+-.-..+||++|+|+|+.+.+.- ....+-...+.+..+ -..++|++||+|+.+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 44556788999999999888777778899999999999986311 111122222333333 246788899999865
Q ss_pred cccCCHHH----HHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 135 QRTVMQED----AEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
-++...++ +..+.+..| ++|+.+|+..|+|+.+.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 33322333 333444444 46999999999998764
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=103.98 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=117.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE--CCeEEEEEEEeCCCccccccccccccccC--
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI--AGKRLNLAIWDTAGQERFHALGPIYYRMS-- 88 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-- 88 (223)
+..-+|+|+|..++||||||.+|.+.. ......+.+|..-.+.- .+...++.+|-..|......+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 456689999999999999999998654 23455555554443322 23334677888888665544444333222
Q ss_pred --CEEEEEEECCCHHH-HHHHHHHHHHHHHHcCC----------------------------------------------
Q psy8722 89 --NGAVLVYDITDEDS-FEKVKNWVKELKKMLGN---------------------------------------------- 119 (223)
Q Consensus 89 --d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---------------------------------------------- 119 (223)
..+|++.|+++++. .+.+..|...+..+...
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 47799999999965 46677787766554321
Q ss_pred ---------------CCeEEEEEeCCCc----ccccc-------CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 120 ---------------DICLTIAGNKIDL----EKQRT-------VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 120 ---------------~~p~ivv~nK~Dl----~~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++|++||+||+|. +.+.+ .....+..||..+|...+++|++...|++-+...|.
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 7999999999996 22222 233557889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
++++..
T Consensus 287 hr~yG~ 292 (473)
T KOG3905|consen 287 HRSYGF 292 (473)
T ss_pred HHhcCc
Confidence 988543
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=119.52 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred ECCCCCcHHHHHHHHhhCCCC--------C----------CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 21 LGEGCVGKTSVVLRYVEDKFN--------E----------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 21 iG~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
+|+.++|||||+++|+...-. . +...+++.......+.+++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999632111 0 0012333333344445555 6788999999988777777
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.++..+|++++|+|.++........-|. .+. ..++|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~---~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAE---KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH---HcCCCEEEEEECCCCC
Confidence 7889999999999998865554433332 222 2368999999999974
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=116.10 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=88.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC----------------CCccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE----------------KHITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+.++-.||+++|+.++|||||+++|+. +.... +....++.+.....+.+++ ..+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 455677999999999999999999973 11100 0133445555455556665 567778999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (223)
|+..|.......+..+|++++|+|+..........-|. .+. ..++|.++++||+|+.... ......++...++.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~---~~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~ 157 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QAD---KYKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGA 157 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHH---HcCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCC
Confidence 99887766777788999999999988764333322222 222 2368999999999986533 23334444444443
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-14 Score=123.61 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=80.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC---------------CCCC---CccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK---------------FNEK---HITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++-.||+++|+.++|||||+++|+... +.+. ...|+........+.+++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 4566799999999999999999997421 1110 111222222222333556668899999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.+|.......++.+|++|+|+|+.+....+...-|.. ....+.|.++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ----ALKENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH----HHHcCCCEEEEEEChhcc
Confidence 99888778888999999999999987432222222222 222357888999999974
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=92.74 Aligned_cols=114 Identities=28% Similarity=0.332 Sum_probs=83.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998776654433 3333 222334566788999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
++..+..+++.+ |...+....+.+.|.++++||.|+.....+..+.. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998766 87777665556688999999999854434333332 245677888898874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=107.55 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=118.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.....-+|+|+|..++||||||.+|.+.. ....+.+.+|....+.-+ +...++.+|-..|...+..+....+...
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 33556799999999999999999987543 334566766655554322 2334789999988666666665554432
Q ss_pred ----CEEEEEEECCCHHHH-HHHHHHHHHHHHHcCC--------------------------------------------
Q psy8722 89 ----NGAVLVYDITDEDSF-EKVKNWVKELKKMLGN-------------------------------------------- 119 (223)
Q Consensus 89 ----d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------------------------- 119 (223)
-++|+|.|++.|+.+ +.+..|+..++.+...
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 478899999998765 4566676555443210
Q ss_pred ------------------CCeEEEEEeCCCcc----ccc-------cCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 120 ------------------DICLTIAGNKIDLE----KQR-------TVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 120 ------------------~~p~ivv~nK~Dl~----~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|++||++|.|.- ... ....+.++.+|..+|+.++++|++...+++-++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 58999999999952 111 1233557788899999999999999999999998
Q ss_pred HHHHHHHHH
Q psy8722 171 ELSQRMLEK 179 (223)
Q Consensus 171 ~i~~~~~~~ 179 (223)
.|.+.++..
T Consensus 258 yi~h~l~~~ 266 (472)
T PF05783_consen 258 YILHRLYGF 266 (472)
T ss_pred HHHHHhccC
Confidence 888877543
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=116.36 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=97.2
Q ss_pred cHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE----------------EEEEEEeCCCccccccccccccccCCE
Q psy8722 27 GKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR----------------LNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 27 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+||||+.++.+.........+++.++.-..+..+... -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999777776666666666655554443110 127899999999998887777888999
Q ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC----------------HHHHH----HH-
Q psy8722 91 AVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM----------------QEDAE----KY- 146 (223)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~~- 146 (223)
+++|+|+++ +.+++.+. .+.. .++|+++++||+|+...+... .++.. ++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 44444433 2222 258999999999985332210 01110 01
Q ss_pred --HHHh---------------CCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 147 --AQSV---------------GAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 147 --~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.... .++++.+||++|+|+++++..|...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 2478999999999999999877654
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=108.87 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=71.6
Q ss_pred EEEEEEeCCCcccc-----ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 64 LNLAIWDTAGQERF-----HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 64 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
..+.|+||||.... .......+..+|+++||+|.....+... ......+... +...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 35788899995432 1123346899999999999987433332 1223334332 223599999999998543322
Q ss_pred CHHHHHHHHHH----hCC---cEEEecCCCCCCHHHHHHHHHH
Q psy8722 139 MQEDAEKYAQS----VGA---VHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 139 ~~~~~~~~~~~----~~~---~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
..+.+..+... .++ .+|.+||+.|.|++.+++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34455554322 222 5899999999999999988877
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=91.32 Aligned_cols=136 Identities=21% Similarity=0.165 Sum_probs=94.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccCCEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYRMSNGAV 92 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 92 (223)
||+++|..|+|||||.+++.+...... .|...+ +++. -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999986544322 222222 2221 145999943 22222333457899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|-.++++++.- -..+.... ..|+|-+++|.||.+.. ..+..+++..+.|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Cccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999986521 11122222 35699999999997532 45677888888887 7899999999999999987
Q ss_pred HHH
Q psy8722 172 LSQ 174 (223)
Q Consensus 172 i~~ 174 (223)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=105.30 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=106.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh--hCCCCCCC------------ccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV--EDKFNEKH------------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (223)
-||++|-+..-|||||+..|+ ++.|.... ...-|.++..+...++...+.+.|.|||||.+|-...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 489999999999999999998 44443321 1122334444433344444778888999999999999
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHH-------hCCc
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQS-------VGAV 153 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~-------~~~~ 153 (223)
+..+..+|++++++|+.+.-.. +..--+.+....+.+.|||+||+|-++.+... .++...++.. +++|
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMP----QTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMP----QTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCC----chhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999984321 11122344444577888999999987665321 1334444433 4578
Q ss_pred EEEecCCCCC----------CHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNR----------GIEEMFLELSQRM 176 (223)
Q Consensus 154 ~~~~Sa~~~~----------~i~~~~~~i~~~~ 176 (223)
+++.|+..|. ++.-+|+.|++.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8998887663 5566666666554
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=99.24 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---L------ 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~------ 80 (223)
.....++|+|+|.+|+|||||+|+|++..... ......+..........++ ..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 34678999999999999999999999655432 2222233333333334455 5678999999553310 0
Q ss_pred -ccccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCcc
Q psy8722 81 -GPIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLE 133 (223)
Q Consensus 81 -~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (223)
...++ ...|++++|..++....-..-...+..+...++.. .++++|.||+|..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 11222 25688888876664321111123444444443322 4689999999974
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=98.63 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=70.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------ccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG-------PIY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~ 84 (223)
.+.++|+++|.+|+||||++|+|++.... .+...+.+...........+ ..+.+|||||........ ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 57899999999999999999999965532 11122222222222223444 578899999955432111 111
Q ss_pred c--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEeCCCcc
Q psy8722 85 Y--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLE 133 (223)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~ 133 (223)
+ ...|+++||..++....-..-...+..+...++. -.+++|+.|+.|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 1 2689999997655321111112334444444432 24689999999964
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=103.27 Aligned_cols=168 Identities=16% Similarity=0.287 Sum_probs=125.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
......+-+++.++|+.++|||.|++.+.+..+..++..+....+....+...+....+++-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3444567889999999999999999999998888877777777777777777777777778888764 222222222 67
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|+++++||.+++.+|..+...++.-... ...|+++|++|.|+....+...-.-.+++.++++ +.+..|.+.... .
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N 572 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence 99999999999999999888755554433 5789999999999976554333223889999998 356677774333 8
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKA 180 (223)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (223)
++|..|..+.....
T Consensus 573 ~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 573 ELFIKLATMAQYPH 586 (625)
T ss_pred hHHHHHHHhhhCCC
Confidence 89998888775543
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=93.98 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=75.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cCCE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR---MSNG 90 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~ 90 (223)
++-.|+++|+.++|||+|+-+|..+.+..... ...-....+..+.. .+.++|.|||.+.+.....++. .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 33579999999999999999998664432211 11111222233333 3678899999987766666665 7899
Q ss_pred EEEEEECCCH-HHHHHHH-HHHHHHHHH--cCCCCeEEEEEeCCCcc
Q psy8722 91 AVLVYDITDE-DSFEKVK-NWVKELKKM--LGNDICLTIAGNKIDLE 133 (223)
Q Consensus 91 ~i~v~d~~~~-~s~~~~~-~~~~~~~~~--~~~~~p~ivv~nK~Dl~ 133 (223)
++||+|...- .....+. -++..+... ....+|+++..||.|+-
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999997642 2223333 344444444 35678999999999983
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=100.42 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=78.7
Q ss_pred cccccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+++..+.+.++.++|++++|||+.++. ++..+.+|+..+.. .++|+++|+||+||.....+..+....+ ..++.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667778888999999999999999887 89999999987654 4689999999999965444333344444 457889
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=98.71 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=81.9
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHcC----CCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-------SFEKVKNWVKELKKMLG----NDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D 131 (223)
.+.+.+||++|+...+..|..++.+++++|+|+|+++.. ..+.+..-+..+..... .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 477899999999999999999999999999999998731 11233333333333222 4789999999999
Q ss_pred ccc----------------cccCCHHHHHHHHHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 132 LEK----------------QRTVMQEDAEKYAQS----------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 132 l~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+-. ......+.+..+... ..+..+.++|.+..++..+|+.+.+.++...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 611 001233444444322 1233567899999999999999998887764
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=97.17 Aligned_cols=161 Identities=13% Similarity=0.171 Sum_probs=90.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC--ccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-------cc----c
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH--ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-------LG----P 82 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~ 82 (223)
++|+|+|.+|+||||++|.+++....... ....+.........+++. .+.++||||-..... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999966554332 122333444444567774 466779999322111 01 1
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCccccccC-------CHHHHHHHHHHhCCc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTV-------MQEDAEKYAQSVGAV 153 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~ 153 (223)
....+.|++++|+.+.. -+-. -...+..+...+++. ..++||.|..|......+ ......++....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 23456899999999983 2221 222333444444432 357888888775333221 012355666777777
Q ss_pred EEEecCC------CCCCHHHHHHHHHHHHHHHH
Q psy8722 154 HFHTSAK------MNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 ~~~~Sa~------~~~~i~~~~~~i~~~~~~~~ 180 (223)
|+..+.+ ....+.++++.|-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8777665 22456666666665555443
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=98.57 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=106.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC---------------------------------CCCccccceeEEEEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN---------------------------------EKHITTLQASFLNKKLNI 59 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 59 (223)
...+|.+.+|...=||||||-+|+.+.-. .+...+++.++..+++..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999998632210 112445677777777766
Q ss_pred CCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC
Q psy8722 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM 139 (223)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 139 (223)
+.++ |++-|||||++|.+.+..-...||++|+++|+... .....+-...+....+- ..+++.+||+||.+..+..
T Consensus 84 ~KRk--FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 EKRK--FIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccce--EEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence 6654 56669999999988887777889999999999643 22222223334444432 5788889999997665433
Q ss_pred H----HHHHHHHHHhCC---cEEEecCCCCCCHHH
Q psy8722 140 Q----EDAEKYAQSVGA---VHFHTSAKMNRGIEE 167 (223)
Q Consensus 140 ~----~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 167 (223)
+ .+...|+..+++ .++.+||..|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 445567788876 588999999999864
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=92.54 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
....++++.|......... .-++.+|.|+|+.+..+... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4556778888422111111 12688999999987655321 111111 122388999999874322233444
Q ss_pred HHHHHH--hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 144 EKYAQS--VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 144 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+.... .+.+++++|+++|+|+.++|++|.+.++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 3468999999999999999999987654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=97.16 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=80.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-------SFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl 132 (223)
+.+.+||++|+...+..|..++.+++++|||+|+++.. ....+..-+..+..... .+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 66889999999999999999999999999999999731 11223333333333322 46899999999996
Q ss_pred ccc---------------ccCCHHHHHHHHH-----HhC------CcEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 133 EKQ---------------RTVMQEDAEKYAQ-----SVG------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 133 ~~~---------------~~~~~~~~~~~~~-----~~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
-.. .....+.+.++.. ... +-.+.++|.+..++..+|+.+.+.++....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 210 0012333333332 111 234678899999999999999888887653
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=99.76 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=60.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERF 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~ 77 (223)
...++|+++|.||+|||||+|+|++........+.++.+.....+.+.+.. ..+.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456799999999999999999999766665555666665555555444322 24788899994421
Q ss_pred c----ccc---ccccccCCEEEEEEECC
Q psy8722 78 H----ALG---PIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 78 ~----~~~---~~~~~~~d~~i~v~d~~ 98 (223)
. .+. -..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 111 22357899999999974
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=114.46 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CC--------------CCccccceeEEEEEEEE--------------C
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE--------------KHITTLQASFLNKKLNI--------------A 60 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~--------------~ 60 (223)
++++-.||+|+|+.++|||||+++|+...- .. +.....+.......+.+ +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 345667999999999999999999983221 11 00111122211122222 2
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..+.+.++||||+.+|.......++.+|++|+|+|+.+.-......-|... ...++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH----HHCCCCEEEEEECCccc
Confidence 2356778899999999988888888999999999999986443333333332 23478999999999974
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-12 Score=114.11 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--CC--------------CCccccceeEEEEEEEEC--------CeEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--NE--------------KHITTLQASFLNKKLNIA--------GKRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (223)
.++-.||+++|+.++|||||+++|+...- .. +...+++.......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45566999999999999999999984221 10 001111222111222232 2246788
Q ss_pred EEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
++||||+.+|.......++.+|++|+|+|+.+.-......-| +.....++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~----~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL----RQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH----HHHHHcCCCEEEEEEChhhh
Confidence 899999998888788888999999999999885433322222 22222468999999999985
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-12 Score=112.21 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=77.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCC--------------CccccceeEEEEE--EEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEK--------------HITTLQASFLNKK--LNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G 73 (223)
.++-.+|+++|+.++|||||+.+|+...- ... ....++....... +..++....+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 45566899999999999999999973221 110 0011122111112 22344457788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+.+|.......++.+|++|+|+|+..........-|..... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988878888899999999999887533322222332222 246789999999974
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=97.10 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=68.2
Q ss_pred EEEEEeCCCccccc---cccccccc---c--CCEEEEEEECCCHHHHHHHH--HHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 65 NLAIWDTAGQERFH---ALGPIYYR---M--SNGAVLVYDITDEDSFEKVK--NWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 65 ~~~i~D~~G~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.+.+||+||+.... ..+..+++ . ++++++++|+.......... .|+..... ...++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 58899999976532 22222222 2 88999999997644332222 12222221 123689999999999854
Q ss_pred cccCCHHHHHH----------------------------HHHHhC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 135 QRTVMQEDAEK----------------------------YAQSVG--AVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
..+. +...+ .....+ .+++.+|+.++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122333 4789999999999999999998765
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-11 Score=99.12 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=103.2
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCC-------------------------------CCCCccccceeEEE
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKF-------------------------------NEKHITTLQASFLN 54 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~ 54 (223)
++.+.++...++++++|+..+|||||+.+++...- .++... |+....
T Consensus 168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v 245 (603)
T KOG0458|consen 168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDV 245 (603)
T ss_pred cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEe
Confidence 44556667899999999999999999988752111 111122 333333
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHcCCCCeEEEEEe
Q psy8722 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEK---VKNWVKELKKMLGNDICLTIAGN 128 (223)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p~ivv~n 128 (223)
...+++.....+.|.|+||+..|......-...||++++|+|++... .|+. .++....++. .+ -..++|++|
T Consensus 246 ~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lg-i~qlivaiN 323 (603)
T KOG0458|consen 246 KTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LG-ISQLIVAIN 323 (603)
T ss_pred eeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cC-cceEEEEee
Confidence 44444555567888899999999888777778899999999998632 2221 1112222222 22 346788899
Q ss_pred CCCccccccCCHHH----HHHHH-HHhC-----CcEEEecCCCCCCHHHH
Q psy8722 129 KIDLEKQRTVMQED----AEKYA-QSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 129 K~Dl~~~~~~~~~~----~~~~~-~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
|.|+.+=.+-.+++ +..|. +..| +.|+.+|+..|+|+...
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99985433323333 33344 3344 36899999999998654
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-11 Score=103.26 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=106.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC------------C----eEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA------------G----KRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~i~D~~G~~~ 76 (223)
-+..-|||+|+..+|||-|+..+.+.........+++..+.-.++... + ..-.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 345679999999999999999998766655544444333322222111 0 111377889999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-----ccc-----------CCH
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-----QRT-----------VMQ 140 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~-----------~~~ 140 (223)
|..++......||.+|+|+|+...--...+.. ++.++. .+.|+||.+||+|--- .+. ...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH-HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 99999988899999999999987422222221 122333 4789999999999410 000 000
Q ss_pred HH--------HHHHHH-HhC-------------CcEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 141 ED--------AEKYAQ-SVG-------------AVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 141 ~~--------~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
.+ +.+|+. .++ +.++.+||..|+||-+++-+|++.....+.+
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 11 112211 111 1346699999999999999999887666544
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-11 Score=90.14 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=85.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-C-----------CCcc----ccceeEEEEEEE------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-E-----------KHIT----TLQASFLNKKLN------------------ 58 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~-----------~~~~----~~~~~~~~~~~~------------------ 58 (223)
.....|+|+|+.|+|||||++++...... . .... ..+.. ...+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEEcCCCcccCChHHHHHHHHH
Confidence 45678999999999999999998732110 0 0000 00000 00000
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.......+.++|+.|.-... ..+....+..+.|+|+.+.... .... ... ...|.++++||+|+......
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~---~~~---~~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY---PGM---FKEADLIVINKADLAEAVGF 166 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh---HhH---HhhCCEEEEEHHHccccchh
Confidence 00112467777888821100 1111234556778888754321 1111 111 13578999999998654322
Q ss_pred CHHHHHHHHHHhC--CcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 139 MQEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 139 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
......+.....+ .+++.+|++++.|++++++++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2344444444444 789999999999999999999764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=93.31 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=57.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERFH-- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (223)
++|+++|.||+|||||+|+|++........+.++.+.....+.+.+.. ..+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999766555545666555544444444321 257888999954221
Q ss_pred --ccccc---ccccCCEEEEEEECC
Q psy8722 79 --ALGPI---YYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 --~~~~~---~~~~~d~~i~v~d~~ 98 (223)
.+... .++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 357899999999984
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=89.57 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=81.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+...|+++|++|+|||||++.+.............|. + .+ .......+.++||||.. .. .....+.+|+
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv 106 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL 106 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence 3566788999999999999999999854221111111111 1 11 11123467788999853 22 2233578999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCccccccCCH---HHHHH-HHHH--hCCcEEEecCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICL-TIAGNKIDLEKQRTVMQ---EDAEK-YAQS--VGAVHFHTSAKMNR 163 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~---~~~~~-~~~~--~~~~~~~~Sa~~~~ 163 (223)
+++++|......... ..++..+.. .+.|. ++|+||+|+........ +++.+ +..+ -+.+++.+||+++-
T Consensus 107 VllviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 107 VLLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999999986443222 223333332 24674 55999999853221111 12222 2221 23589999998874
Q ss_pred CH
Q psy8722 164 GI 165 (223)
Q Consensus 164 ~i 165 (223)
.+
T Consensus 183 ~~ 184 (225)
T cd01882 183 RY 184 (225)
T ss_pred CC
Confidence 43
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-10 Score=91.33 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=92.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC----CCC------------CCCccc-----cceeE---EEEEEE-ECCeEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED----KFN------------EKHITT-----LQASF---LNKKLN-IAGKRLNLA 67 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~----~~~------------~~~~~~-----~~~~~---~~~~~~-~~~~~~~~~ 67 (223)
.-++.|.|+|+.++|||||||+|.+. ... ++..++ +...+ ....+. .++-...+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44789999999999999999999876 222 111111 11222 111221 245556888
Q ss_pred EEeCCCccc--------ccc--c-------------------cccccc-cCCEEEEEE-ECCC----HHHH-HHHHHHHH
Q psy8722 68 IWDTAGQER--------FHA--L-------------------GPIYYR-MSNGAVLVY-DITD----EDSF-EKVKNWVK 111 (223)
Q Consensus 68 i~D~~G~~~--------~~~--~-------------------~~~~~~-~~d~~i~v~-d~~~----~~s~-~~~~~~~~ 111 (223)
++||+|-.. ... + ....+. .+++.|+|. |.+- ++.+ +.-.+|+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 111 0 122334 789999998 6641 1222 33345667
Q ss_pred HHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC--CCCHHHHHHHHH
Q psy8722 112 ELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM--NRGIEEMFLELS 173 (223)
Q Consensus 112 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~ 173 (223)
.+... ++|+++++|+.|-.... ..+...++..+++++++.+|+.. .+.+..+++.+.
T Consensus 175 eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 77664 79999999999932211 34445567777888877666542 234444444433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-11 Score=89.23 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=104.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc---ccccccCCEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---PIYYRMSNGA 91 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---~~~~~~~d~~ 91 (223)
.-+|+++|...+||||+-.....+..+.+...-..... ...-.+.+..+.+.+||.||+..+..-. ...++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 35599999999999998655444433332211111111 1111233455789999999988664332 5578999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCc-ccc------ccCCHHHHHHHH----HHhCCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDL-EKQ------RTVMQEDAEKYA----QSVGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl-~~~------~~~~~~~~~~~~----~~~~~~~~~~S 158 (223)
|+|+|+.+. -.+.+..+...+.+.. ++++.+-|++.|.|- .+. +.+......+++ ....+.|+-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999999874 3455555555555543 478999999999994 222 111111112222 12233566666
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
.. ..++.++|..+.+.+.++.+--+
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhchhHH
Confidence 55 67899999999999988876543
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-11 Score=89.57 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=101.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-----HALGPIYYRM 87 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 87 (223)
..-||+++|.+|+|||++=..+..+.. -....++.+.++.-....+-| +..+.+||++|++.+ .......+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 346899999999999998544442221 122234455555444443333 267899999998843 2244567899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--cccCCHHHHHHHH----HHhCCcEEEecC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--QRTVMQEDAEKYA----QSVGAVHFHTSA 159 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~----~~~~~~~~~~Sa 159 (223)
++++|+|||+...+-..++..+...+.... .+...+.+..+|.|+.. .+....+...+.. ...++.++.+|.
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999998876666665555444433 25567888899999843 3333333333222 233345666665
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
. ++.+-.+|..+...+.+.
T Consensus 162 w-Detl~KAWS~iv~~lipn 180 (295)
T KOG3886|consen 162 W-DETLYKAWSSIVYNLIPN 180 (295)
T ss_pred h-hHHHHHHHHHHHHhhCCC
Confidence 5 445666666666655433
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=97.61 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=77.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccce---eEEEEEEEECCeEEEEEEEeCCCccccccccc-----cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA---SFLNKKLNIAGKRLNLAIWDTAGQERFHALGP-----IY 84 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~ 84 (223)
...++|+|+|.+|+|||||||.|.+-...+.....+|. +.....+.. ...-++.+||.||..-..-... .-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35789999999999999999999753332222222211 111111111 1112589999999542221112 23
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc--c-----cccCCH----HHHHHHH----HH
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE--K-----QRTVMQ----EDAEKYA----QS 149 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~-----~~~~~~----~~~~~~~----~~ 149 (223)
+...|.+|++.+-.=... .+ .+...+.+ .++|+++|-+|+|.. . ++.... +++++-+ ++
T Consensus 112 ~~~yD~fiii~s~rf~~n--dv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--DV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--HH--HH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCchh--hH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 566798888777442221 11 12233443 378999999999961 1 111121 2222222 22
Q ss_pred hCC---cEEEecCCCCC--CHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA---VHFHTSAKMNR--GIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 150 ~~~---~~~~~Sa~~~~--~i~~~~~~i~~~~~~~~~~ 182 (223)
.|+ ++|-+|..+-. +...+.+.+...+...+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 343 57888887654 4666666666665444433
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-10 Score=89.72 Aligned_cols=128 Identities=14% Similarity=0.230 Sum_probs=89.3
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHcC----CCC
Q psy8722 53 LNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKMLG----NDI 121 (223)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~ 121 (223)
....+.+++ ..+.++|++||...+..|..++.+++++|||+++++- ..-+.+.+-+..+...++ .+.
T Consensus 186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 344555556 6778889999999999999999999999999999873 223445555556665554 468
Q ss_pred eEEEEEeCCCcc--------------cccc-CCHHHHHHHHH-----Hh-----CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 122 CLTIAGNKIDLE--------------KQRT-VMQEDAEKYAQ-----SV-----GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 122 p~ivv~nK~Dl~--------------~~~~-~~~~~~~~~~~-----~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++|+++||.|+= +-.. -..+++..+.. .+ .+-++.+.|.+..+|+.+|....+.+
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 999999999971 1111 12334333332 11 12345678999999999999999988
Q ss_pred HHHHHH
Q psy8722 177 LEKAQE 182 (223)
Q Consensus 177 ~~~~~~ 182 (223)
.....+
T Consensus 344 i~~nlk 349 (354)
T KOG0082|consen 344 IQNNLK 349 (354)
T ss_pred HHHHHH
Confidence 876543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=91.58 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=65.6
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQE 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 141 (223)
+.+.|+||+|...-... ....+|.++++.+.........+.. .+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 67888999996533222 4567999999977444444433321 1111 233799999998543211 112
Q ss_pred HHHHHHHH-------hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQS-------VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 142 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+....... +..+++.+|+.++.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222222 2357999999999999999999998764
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=88.71 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=95.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC----C---CCCCccccceeEEEEEEEE-------CCeEEEEEEEeCCCccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK----F---NEKHITTLQASFLNKKLNI-------AGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 78 (223)
.-.+|+.++|+..+|||||.+++..-. | +.+....++.+.....+.+ ++....+.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999986321 1 2222333444444444332 4566788999999986543
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc--ccCCH-HHHHHHHHHh-----
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ--RTVMQ-EDAEKYAQSV----- 150 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~-~~~~~~~~~~----- 150 (223)
+..-....-.|..++|+|+.....-+..+.++ +-... ....+||+||+|+-.+ +.-.. +..+++.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 33322334458889999998754333333321 11121 2356788899986322 22111 2223333222
Q ss_pred --CCcEEEecCCCC----CCHHHHHHHHHHHHHH
Q psy8722 151 --GAVHFHTSAKMN----RGIEEMFLELSQRMLE 178 (223)
Q Consensus 151 --~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~ 178 (223)
+.|++++|+..| +++.++.+.+..++.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 258999999999 5666665555555543
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-12 Score=98.25 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=58.6
Q ss_pred EEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHH-HHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 65 NLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSF-EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+.++|||||.++...+.... ...-++++++|.....+. ..+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678899999887654443322 345578889997654332 22333444444333347899999999998552
Q ss_pred cc-------C------------CHHHHHHHHHH---hC-C-cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 136 RT-------V------------MQEDAEKYAQS---VG-A-VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 136 ~~-------~------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.. . ......+++.. .+ . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 00111122222 22 2 689999999999999998876654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=90.12 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCC----------ccccceeEEEEEEEECCeEEEEEEEeCCCccc--------
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKH----------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-------- 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 76 (223)
.++|+|+|.+|+|||||||.|.+....... ..+.........+.-++..+.+.++||||-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999865543331 12222333333444567778999999999221
Q ss_pred ----------ccccc---------ccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 77 ----------FHALG---------PIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 77 ----------~~~~~---------~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
|.... ...=..+|+++|.++.+... .-.++ ..+..+. ..+++|-|+.|.|.-...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCHH
Confidence 00000 00012368999999987532 11122 2333333 358999999999963221
Q ss_pred c--CCHHHHHHHHHHhCCcEEEe
Q psy8722 137 T--VMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 137 ~--~~~~~~~~~~~~~~~~~~~~ 157 (223)
+ ...+.+.+-...+++.+|.-
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHcCceeecc
Confidence 1 12233444556677776653
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=98.27 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=86.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC---CC-------------ccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE---KH-------------ITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.++--||.++|+..+|||||..+++. +.... .. ..+++.......+.+.+ .+.+.++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 56778999999999999999999872 22211 00 12233333344444554 46778889999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|-+|.......++-+|++++|+|+.+.-..+.-.-|.+... .++|.++++||+|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 99999999999999999999999998655544444555444 4789999999999643
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=82.32 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=57.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCCCC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMNRG 164 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~ 164 (223)
+.-|+|+|....+- +.+...+. ..=++|+||.|+...-....+...+-+++.+ .+++++|+++|+|
T Consensus 119 ~~~v~VidvteGe~----------~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGED----------IPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCC----------CcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 47899999987642 11111111 1348999999997776666677777777665 5899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
++++++|+....
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999887654
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=96.90 Aligned_cols=169 Identities=22% Similarity=0.406 Sum_probs=126.1
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+.+-+++|+.|+|..++|||+|+++++...+.....+ .+..| ...+.+.+....+.+.|.+|+.. ..|-..+|
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvd 97 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVD 97 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEeeccceEeeeecccCCch-----hhhhhhcc
Confidence 4567899999999999999999999998888766443 34444 45555677777888889888432 34567799
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCcc--ccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLE--KQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
++||||.+.+..+|+.+..+...+..... ..+|+++++++.-.. ..+.+......+++.. ..+.+|++.+..|-++
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 99999999999999999887776665433 457888888874432 2344444444444444 4468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~~ 185 (223)
...|+.+..++...++....
T Consensus 178 ~rvf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 99999999998887555433
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-09 Score=82.57 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccccc-cc-cccc------cccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQERFH-AL-GPIY------YRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~-~~-~~~~------~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
+...++||||+-... .. .... -....+++||+|.....+... +...+=.-........|+|++.||.|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 567788999965321 11 1111 123467888888655322222 11211112222345799999999999854
Q ss_pred c-----ccCCHHHHHHHHHH---------------------hCCcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 135 Q-----RTVMQEDAEKYAQS---------------------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
. +.-..+..++..+. .++..+-+|+.+|.|.+++|..+.+.+-++...+.
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 3 11111222111111 13467889999999999999999988876665543
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=88.33 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR---------------LNLAIWDTAGQERFH---- 78 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~---- 78 (223)
|+++|.||+|||||+|+|++........++++.+.....+.+.+.. ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999766665555666655555555554431 258899999944211
Q ss_pred ccccc---ccccCCEEEEEEECC
Q psy8722 79 ALGPI---YYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 ~~~~~---~~~~~d~~i~v~d~~ 98 (223)
.+... .++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11112 247799999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=84.94 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=43.3
Q ss_pred EEEEEeCCCccc----cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q psy8722 65 NLAIWDTAGQER----FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130 (223)
Q Consensus 65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (223)
.+.|+||||-.. ....+..+++.+|++|+|.+++...+-.....|....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478889999542 2345677789999999999999866555555444444433 34588888984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=96.71 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=88.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-----------------cccceeEEEEEEE---ECCeEEEEEEEe
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-----------------TTLQASFLNKKLN---IAGKRLNLAIWD 70 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~i~D 70 (223)
.+..-.+++++|+-+.|||+|+..|.....+.... .+.+....+.++- .++..+-+.+.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 35667899999999999999999998666644321 1122223333332 356778899999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
||||..|.......++.+|++++|+|+.+.-++..-+ .+....+.+.|+.+|+||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999999887665543 234444457899999999994
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=91.17 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=92.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh--hCCCCCCC------------------ccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV--EDKFNEKH------------------ITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
.++-.-++|-+|.+|||||-..|+ ++.....- ...-|..++...+.++.....+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 345567899999999999999986 32221100 0112455566666666666788889999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (223)
||++|..-...-+.-+|.+++|+|+...---.. +.++.-..-.++|++-++||.|-+... +.+...++.+.+++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT----~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i 163 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT----LKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGI 163 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHH----HHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCc
Confidence 999999888888888999999999986432221 122322233589999999999964433 45666666666654
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-11 Score=92.96 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=105.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (223)
...--|.++|+.|+||||||+.|+.....+....+.+.+.+.+....+.+ ..+.+.||.|-- .|.+...
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLe- 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLE- 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence 34457899999999999999999966666666666666665665555443 245677999921 1222222
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe----EEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC----LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
-...+|.++.|.|++.|..-......+..++...=+..| ++=|-||+|.+..... ...++ .+-+|+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--cccccc
Confidence 236789999999999998766666666666554222223 3455688886543321 12222 577899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
.+|+|++++.+.+-.++......
T Consensus 324 ltgdgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVASETTV 346 (410)
T ss_pred ccCccHHHHHHHHHHHhhhhhee
Confidence 99999999998888777655433
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=93.72 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=72.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------c----c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------L----G 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~----~ 81 (223)
...++|+|+|.+|+||||++|.|++.. +........+..........++ ..+.|+||||...... . .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999654 3332221112222222233455 4678889999553210 1 1
Q ss_pred ccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCcc
Q psy8722 82 PIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLE 133 (223)
Q Consensus 82 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~ 133 (223)
..++. .+|++|+|..+........-..++..+...++.. ..+||+.|+.|..
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11323 4799999998764332222235666666666533 4578888998864
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-09 Score=78.52 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-------HALGPIYYR 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 86 (223)
-..+|+++|-|.+|||||+..++.........-+++.+..+..+.+++. .+++.|.||.-.- -+..-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 3569999999999999999999844433333334455555667777884 5677799993221 112234557
Q ss_pred cCCEEEEEEECCCHHHHH
Q psy8722 87 MSNGAVLVYDITDEDSFE 104 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~ 104 (223)
.||.+++|.|+...+.-.
T Consensus 139 taDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQR 156 (364)
T ss_pred cccEEEEEecCCcchhHH
Confidence 899999999998765433
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=87.73 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ-- 140 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 140 (223)
.+.+.|+||+|..... ......+|.++++.... +.+.+......+. .+|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3678889999954222 12456678888885433 2233333333232 467899999999864322110
Q ss_pred H----HHHHHHH---HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 141 E----DAEKYAQ---SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 141 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
. ....+.. .+..+++.+|++++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12346899999999999999999988743
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-10 Score=88.47 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=107.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh---CCCCCCCccccceeEEEEEEE------------------EC-----CeE-EE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE---DKFNEKHITTLQASFLNKKLN------------------IA-----GKR-LN 65 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~---~~~~~~~~~~~~~~~~~~~~~------------------~~-----~~~-~~ 65 (223)
++++||.++|+..-|||||..+|.+ ..++++....++....+.... .. ... -.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 7899999999999999999999863 233332222222211110000 00 111 25
Q ss_pred EEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHH
Q psy8722 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDA 143 (223)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~ 143 (223)
+.|.|.|||+-..+.+-+-..-.|++++|+.++++..-.+..+.+-.+.... -..++++=||+|+..... .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7788999998665544444445799999999999654444444333444332 257888899999954322 234666
Q ss_pred HHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 144 EKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 144 ~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
++|.+. -+.|++.+||..+.|++-+++.|.+.+...
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 666653 356899999999999999998887766443
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=85.28 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=103.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhh---CC-------------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVE---DK-------------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+.+||..||+..-|||||..+++. .. .+++ ...|.++....+.++-.+-.+...|+||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCC
Confidence 3457899999999999999999988752 11 1112 2234444445555544444566679999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~ 149 (223)
|.+|-...-.-..+.|++|+|+++.+....+. ++.+...++ -++| +++++||+|+.+..+. -..++.++..+
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 99887666555678899999999998432211 111112222 2565 5667899999764332 23567788888
Q ss_pred hCC-----cEEEecCCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA-----VHFHTSAKMN-RGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 150 ~~~-----~~~~~Sa~~~-~~i~~~~~~i~~~~~~~~~~~ 183 (223)
+++ |++..|+..- +|-.. +..-+..++.....+
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~y 199 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSY 199 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhc
Confidence 886 4666665532 33222 444455555554444
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=87.01 Aligned_cols=155 Identities=19% Similarity=0.101 Sum_probs=107.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
.|...|+---|||||+..+.+... ++....+++.+.........+. .+.|+|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 578889999999999999984433 4455567777776666666554 67777999999887776667778999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH---hCCcEEEecCCCCCCHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS---VGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|++.++.-..+..+. +..+.. .+ -...++++||.|..+... ..+..+++... -..+++.+|+++|+|++++.+
T Consensus 80 vV~~deGl~~qtgEh-L~iLdl-lg-i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDL-LG-IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHh-cC-CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999976433322221 122222 21 234589999999865432 12333333333 235789999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
.|.+..-
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998874
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=82.22 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=42.0
Q ss_pred EEEEEEeCCCcccc-------------cccccccccc-CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 64 LNLAIWDTAGQERF-------------HALGPIYYRM-SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 64 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
..+.++|+||-... ..+...|+++ .+++++|+|+...-.-.....+...+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 46888999995321 1234556664 468999998865322222222222232 346899999999
Q ss_pred CCccc
Q psy8722 130 IDLEK 134 (223)
Q Consensus 130 ~Dl~~ 134 (223)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99754
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-08 Score=79.01 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=56.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE------------C--C--eEEEEEEEeCCCccc--
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI------------A--G--KRLNLAIWDTAGQER-- 76 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~--~--~~~~~~i~D~~G~~~-- 76 (223)
.+++.++|-||+|||||+|.++.........|..+.+-......+ . . ....+.|+|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999966655444555544432222221 1 1 224688999999432
Q ss_pred --cccccccc---cccCCEEEEEEECCC
Q psy8722 77 --FHALGPIY---YRMSNGAVLVYDITD 99 (223)
Q Consensus 77 --~~~~~~~~---~~~~d~~i~v~d~~~ 99 (223)
-..+...| ++.+|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23333333 578999999999764
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=84.23 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=76.3
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKMLG----NDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl 132 (223)
..+.++|++|+...+..|..++.+++++|||+++++- .....+..-+..+...+. .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5678899999998899999999999999999998752 122334444444444332 46899999999996
Q ss_pred ------ccc----------c--cCCHHHHHHHHHHh------------CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 133 ------EKQ----------R--TVMQEDAEKYAQSV------------GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 133 ------~~~----------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
... . .-..+.+..+.... .+.++.++|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 111 1 12344554444321 12356789998899999998887643
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=81.38 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=79.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CccccceeEEEEEEEECCeEEEEEEEeCCCccccc---cc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK----------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---AL 80 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~~ 80 (223)
-.++|+++|+.|.|||||+|.|.+...... ..++.........+.-++..+.+.++||||-.++- ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 478999999999999999999986533222 12333344444444456777889999999922211 11
Q ss_pred c-----------cccc--------------ccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 81 G-----------PIYY--------------RMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 81 ~-----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
| ..|+ ..+|+++|.+..+... ...+ ...+..+.. .+.+|-|+-|.|.-.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence 1 1111 2368999999876532 1111 123333333 467788889999621
Q ss_pred c--ccCCHHHHHHHHHHhCCcEEE
Q psy8722 135 Q--RTVMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~~ 156 (223)
. .....+.+.+....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 1 111223344444555555553
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=77.25 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=67.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.++|++|.|--+.+.. ....+|.+++|.-..-.+..+.++.-+-++ -=++|+||.|.........+..
T Consensus 144 ~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHHH
Confidence 66788899884433222 335689999988777666666665433332 3378899999644322111111
Q ss_pred HHH--H------HHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 144 EKY--A------QSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 144 ~~~--~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
..+ . ..|..+++.+||.+|+|++++|+.|.+......
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 111 1 123357899999999999999999988764433
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=83.01 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-----------CCCCccc---------------cceeEEEEEEEEC------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-----------NEKHITT---------------LQASFLNKKLNIA------ 60 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~------ 60 (223)
.+.+.|.|-|+||+|||||++.|...-. +++...+ .....+.+.+-..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3578999999999999999999752110 1110000 0112233333221
Q ss_pred ------------CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy8722 61 ------------GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128 (223)
Q Consensus 61 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (223)
-..+.++|++|.|--+.+. ....-+|.+++|.-..-.+..+.++.-+-++ .=++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 1126677888887332221 2335699999999877665555444322222 3478899
Q ss_pred CCCccccccCCHHHHHHHHHH-------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 129 KIDLEKQRTVMQEDAEKYAQS-------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
|.|....... ..+.+..... +..|++.+||.++.|++++++.|.+.....
T Consensus 176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9997554332 2333333322 234799999999999999999888754333
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=80.20 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCccccccCCHHHHHHHHHHh--CCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSV--GAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+-++|+||+|+........+...+..... ..+++.+|+++|+|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466899999998543221233333333333 4689999999999999999998763
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=75.52 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=65.0
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhC
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVG 151 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 151 (223)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 46677888999999999999987541 122233222 23579999999999854322 233333333 2333
Q ss_pred C---cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 152 A---VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 152 ~---~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. .++.+||+++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998876
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=81.76 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=68.2
Q ss_pred cccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+..... .+...+....++++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 33445678999999999999875 44566777776643 3689999999999853321 122333445678899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~ 175 (223)
||.++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888654
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=80.33 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=69.0
Q ss_pred cccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+..... ...........+.+++.+|+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEEC
Confidence 344578999999999999987 888888888877653 689999999999854321 12223334557889999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQ 174 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~ 174 (223)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999887764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-08 Score=73.13 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=82.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCC---------CCccccceeEEEEEEEECCeEEEEEEEeCCCccc---ccccc-
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNE---------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---FHALG- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~~~~~- 81 (223)
+|||.|+|.+|.|||||+|.+....... ....|+........+.-++...++.++||||-.+ ....|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999986322211 1122344444444555577778899999999221 11111
Q ss_pred ----------cccc--------------ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcc--c
Q psy8722 82 ----------PIYY--------------RMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLE--K 134 (223)
Q Consensus 82 ----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~--~ 134 (223)
..|+ ..+|+++|.+..+.- +...+. .++..+.. -+.++-|+-|.|-- +
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 1111 235788888877653 222221 23333333 25677778898831 1
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
++....+.+.+-...+++.+|.--+.+-+
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccc
Confidence 22223344555556677777765554433
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=76.71 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=83.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC-------Ccc--ccceeEEEEEEEECCeEEEEEEEeCCCccccc-------
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEK-------HIT--TLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------- 78 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 78 (223)
.|++.++|++|.|||||||.|....+... ..+ +.........+.-+|..+++.++||||-.+..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999886544322 111 33333333334446777889999999922110
Q ss_pred ------------------cccccccc--cCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 79 ------------------ALGPIYYR--MSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 79 ------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
...+..+. .+|+++|.+...... ...+. ..+..+. ..+.+|-|+-|.|.-...+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 00111112 478999999876531 11111 2223333 3577888889999632221
Q ss_pred --CCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 138 --VMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.....+.+-+...++++|.-....
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCc
Confidence 122445555666777777655443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=73.54 Aligned_cols=94 Identities=19% Similarity=0.081 Sum_probs=63.0
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
..+.....+++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+..... .+....+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence 3445667788999999999987643222 11222222 23589999999999843211 112223334456789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~ 177 (223)
||+++.|++++++.+.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999887664
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=79.16 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=65.3
Q ss_pred ccccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (223)
...++|.+++|+|+.++.+... +..|+..+.. .++|+++|+||+|+..... ..+...+.....+.+++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988765444 5677776654 3689999999999853222 123344555667889999999999
Q ss_pred CCHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQ 174 (223)
Q Consensus 163 ~~i~~~~~~i~~ 174 (223)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999887643
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=70.88 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
+++++|.+|+|||||+|++.+.... ....+..+.+ ...+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999966553 2222333333 33344443 4689999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-08 Score=78.19 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=67.7
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-CCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-VMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
..|+|.+++|++.....++..+..|+..+.. .++|.++|+||+|+..... ...+...+.....+.+++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999876653 3689999999999954321 11122333445678899999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.4e-08 Score=72.02 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=39.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
...++++++|.+|+|||||+|++.+... .....++++..... +.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeCC---CEEEEECcC
Confidence 3458999999999999999999996443 44445555544333 23322 467889998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=68.94 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=36.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..++|+++|.+|+|||||+|+|.+... .....++.+... ..+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC---CEEEEECcC
Confidence 468899999999999999999985443 333334433332 2223322 256779998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.5e-07 Score=84.29 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=70.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCC------ccccceeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKH------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPI 83 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 83 (223)
.+|||++|+||||+|+.- +-.++-.. ..+.+.+. ...+++.+ ...++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999876 22332211 11122222 12333333 34588999922 11122333
Q ss_pred cc---------ccCCEEEEEEECCCH---------HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 84 YY---------RMSNGAVLVYDITDE---------DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 84 ~~---------~~~d~~i~v~d~~~~---------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
++ +..|++|+++|+.+- ..-..++..+.++....+-..||+|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 32 457999999998662 1123456677888888888899999999999743
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-07 Score=73.44 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=94.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc--------------ccceeEEEEEEEEC---------------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT--------------TLQASFLNKKLNIA--------------- 60 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~--------------- 60 (223)
...+.++.+.+.|+...|||||+-.|..+......-. +.+.+.....+-++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 3457899999999999999999988875444332211 11111111111111
Q ss_pred ------CeEEEEEEEeCCCcccccccc--ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 61 ------GKRLNLAIWDTAGQERFHALG--PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 61 ------~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
...-.+.|.||.||+.|.+.. ..+-.+.|..++++.+++.-+- +.+ ..+--......|+++++||+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tk--EHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTK--EHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhh--HhhhhhhhhcCCEEEEEEeccc
Confidence 111346788999999886543 4455778999999999985432 111 1111112236899999999998
Q ss_pred cccccC--CHHHHHHHHH----------------------HhC---CcEEEecCCCCCCHHHHHHH
Q psy8722 133 EKQRTV--MQEDAEKYAQ----------------------SVG---AVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 133 ~~~~~~--~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~~~~~ 171 (223)
...... ..+++..+.+ +.+ +|++.+|+.+|+|++-+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 432111 1122222221 111 37899999999998755433
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=77.15 Aligned_cols=95 Identities=28% Similarity=0.339 Sum_probs=69.6
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH----HHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE----KYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 149 (223)
.+.|..+...+++.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+... +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777888889999999999997643 235555555543 5799999999998542 22333333 34666
Q ss_pred hCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 150 VGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 150 ~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 776 48999999999999999988653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=73.30 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=92.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC---CC-------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED---KF-------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+.+||.-||+..-|||||-.+++.. .- +++ ..-|.++....+.++-..-...=.|+|||
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCch
Confidence 3578999999999999999998876421 11 111 22344444444444333333445599999
Q ss_pred cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-C--CHHHHHHHHHHhC
Q psy8722 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT-V--MQEDAEKYAQSVG 151 (223)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~--~~~~~~~~~~~~~ 151 (223)
.+|-...-.-..+.|++|+|+.+.|.... +.++.+...++. + -..+++++||.|+.++.+ + -.-++.++...+|
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 98866665555778999999999995322 222222233332 1 135778899999863322 1 2345677788887
Q ss_pred C-----cEEEec---CCCCC
Q psy8722 152 A-----VHFHTS---AKMNR 163 (223)
Q Consensus 152 ~-----~~~~~S---a~~~~ 163 (223)
+ |++.-| |..+.
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred CCCCCCCeeecchhhhhcCC
Confidence 5 677755 44553
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=68.88 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...++++++|.+|+|||||+|++.+..+. ....++++.. ...+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45689999999999999999999976553 2223333333 3333333 24678999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=67.09 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=38.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+++++|.+|+|||||+|++.+... ....++.+.+.....+..++ .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3467899999999999999999985442 22233444333333333333 588999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=72.68 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=87.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
.....+++++|.+|+|||+|||.++...... ...+..+.......+.++. .+.+.|.|| ...+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 3567899999999999999999998433322 2222333333333333333 456679999 1233444
Q ss_pred cccccccCC---EEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCcccc------ccC-----CHHHHH
Q psy8722 81 GPIYYRMSN---GAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQ------RTV-----MQEDAE 144 (223)
Q Consensus 81 ~~~~~~~~d---~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~-----~~~~~~ 144 (223)
...|+.+-+ -+.+.+|++-+-.-.+ ...|+. ..++|+.+|.||+|.... ++. ..+...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh------hcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 455543322 3344555554321111 112322 247999999999996321 111 112222
Q ss_pred HHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 145 KYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
+.+-....+++.+|+.++.|++.++-.|.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 222333457788999999999988766654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=71.17 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC---------CCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF---------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..+++++|.+|+|||||+|+|..... ..+..++++.+ ...+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 46899999999999999999985432 22333443333 33333332 367889999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=79.89 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=81.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCC-------------CccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEK-------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
.+++.--+|+++-+..-|||||...|+ .+..... ...+.|.+....-+..-.+.+.+.++|+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 345667799999999999999999987 2222111 12233333333344443345778888999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+|.+......+-+|++++.+|+.+.-..+...-+.+.+. .+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 999999999999999999999988543332222222222 3567789999999
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-07 Score=72.92 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=41.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
...++|+++|.+|+|||||+|+|.+... .....++++... ..+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999996554 444455555444 3333333 36789999953
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-07 Score=73.51 Aligned_cols=83 Identities=14% Similarity=-0.033 Sum_probs=56.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERFH- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 78 (223)
+++.++|.|++|||||++.+++... .....+..+.+.....+.+.+. ...+.+.|+||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997666 4444455444444444444332 1357788999954321
Q ss_pred ---ccc---ccccccCCEEEEEEECC
Q psy8722 79 ---ALG---PIYYRMSNGAVLVYDIT 98 (223)
Q Consensus 79 ---~~~---~~~~~~~d~~i~v~d~~ 98 (223)
.+. -..++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 111 22468899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=70.41 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=74.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-cccceeEEEEEEEE--------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTLQASFLNKKLNI-------------------------------- 59 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------- 59 (223)
...-=|+++|.-..||||+|+.|+...++.... +..+.++....+.-
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 444568999999999999999999888864332 11222222221110
Q ss_pred ------CC-eEEEEEEEeCCCcc-----------ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC
Q psy8722 60 ------AG-KRLNLAIWDTAGQE-----------RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121 (223)
Q Consensus 60 ------~~-~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (223)
.+ ..-.+.|+||||.- .|....+=+...+|.+|++||...-+--+..... +....+..-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v---i~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV---IDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH---HHHhhCCcc
Confidence 01 11247788999922 1223334456789999999998664433334433 333444456
Q ss_pred eEEEEEeCCCccccc
Q psy8722 122 CLTIAGNKIDLEKQR 136 (223)
Q Consensus 122 p~ivv~nK~Dl~~~~ 136 (223)
.+-||+||.|..+..
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 788999999975543
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-07 Score=71.97 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=40.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...++++++|.+|+|||||+|+|.+... .....++++... ..+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999996543 334444444433 3344433 3678999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-07 Score=71.66 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=91.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc-----------------------ccceeEEEEEEEE----------C
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT-----------------------TLQASFLNKKLNI----------A 60 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~----------~ 60 (223)
-+++++++|.-.+|||||+-.|+.+..+...-. ..|++-....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 367999999999999999987765554432200 1122211111111 1
Q ss_pred CeEEEEEEEeCCCccccccccccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc-
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT- 137 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 137 (223)
...--+.++|.+|+.+|.......+. -.|.+++|++++....+.. ++.+..+.. -++|++++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 22235778899999988766544332 3688999999887654432 222333333 3799999999999854311
Q ss_pred -----------------------CCHHHHHHHHHHh----CCcEEEecCCCCCCHHHH
Q psy8722 138 -----------------------VMQEDAEKYAQSV----GAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 138 -----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~ 168 (223)
-..+++...+++. -.|+|-+|+..|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1122222222222 247899999999997643
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-07 Score=73.70 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=41.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
...+++.|+|.||+|||||||+|.+... ..+..| |.+.....+.++.. +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 4568899999999999999999996555 344444 44444455555543 778899993
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=72.00 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=83.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-ccc-------------------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-TTL------------------------------------------- 48 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~~~------------------------------------------- 48 (223)
....||++.|..++||||++|+++....-++.. +++
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 346799999999999999999988555433321 111
Q ss_pred ceeEEEEEEEECCeE----EEEEEEeCCCcc---ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC
Q psy8722 49 QASFLNKKLNIAGKR----LNLAIWDTAGQE---RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (223)
+.....+.++-++.. -.+.+.|.||.+ ....-...+..++|++|+|.++.+.-+...- .+ +......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~F---f~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QF---FHKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HH---HHHhhccCC
Confidence 000011111111100 146677899844 2333345667889999999999876544332 22 232222344
Q ss_pred eEEEEEeCCCccccccCCHHHHHHHHHHhCC--------cEEEecCC
Q psy8722 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--------VHFHTSAK 160 (223)
Q Consensus 122 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~ 160 (223)
.+.++.||+|.....+...+++.....++.. .+|.+|++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 5677778999866554444555544333332 36677743
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.7e-07 Score=65.10 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=38.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
....+|+++|.+|+|||||+|.+.+.. ...+..+.++...... ... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCC
Confidence 456889999999999999999999544 3334344444444332 222 2467889998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=62.41 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|.+++|+|+.++.+... .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988755432 22221 1222346899999999998432211 11122233334556889999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 169 FLELSQRMLE 178 (223)
Q Consensus 169 ~~~i~~~~~~ 178 (223)
++.+.+.+.+
T Consensus 77 ~~~i~~~~~~ 86 (155)
T cd01849 77 ESAFTKQTNS 86 (155)
T ss_pred HHHHHHHhHH
Confidence 9998877543
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-06 Score=64.34 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=52.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCc-cccceeEEEEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHI-TTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHAL------GP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~ 82 (223)
.+-.-|+|+|++++|||+|+|.|.+. .+..... ...+..+........ +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999977 6653322 112222222222121 23467889999995533221 11
Q ss_pred ccccc--CCEEEEEEECCCHH
Q psy8722 83 IYYRM--SNGAVLVYDITDED 101 (223)
Q Consensus 83 ~~~~~--~d~~i~v~d~~~~~ 101 (223)
..+.. ++.+|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12223 78888877766543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=63.62 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=56.0
Q ss_pred ccccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+.++|.+++|+|+.++.. ...+.+++ .. ...+.|+++|+||+|+..... .......+.+.+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence 4578999999999998632 22333333 22 233589999999999843221 11122222222223347799999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998886643
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=71.77 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=80.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+-++|+||+|+||||||+.|+..-... |+.....+.++ +.+..-.+.+.++|.. .+.+. ...+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~D--l~~mi-DvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSD--LHQMI-DVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHH--HHHHH-hHHHhhhe
Confidence 34678899999999999999999987322211 11110111111 3455567788899842 22222 23466899
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccCCHHHHHH-----HHHH--hCCcEEEecCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTVMQEDAEK-----YAQS--VGAVHFHTSAKM 161 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~ 161 (223)
+++.+|.+-.--.+.+ .+++.+..+ ++| ++-|+|..|+-.... ....++. |..+ .|+++|.+|-..
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999998865433333 244455444 455 677889999843321 1222222 2222 257788887653
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-07 Score=74.52 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC--C------CCCC--------ccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK--F------NEKH--------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~--~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
+--+|.++.+-.+||||.-.+++.-. . .... ....|.++...-+.++.+...+.++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34589999999999999999976211 1 1110 111234444444555555577888899999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
.-..+.+++-.|+++.|||.+-.-..+.+.-|.+. -..++|.+.++||+|..... ....+....+++++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK 185 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence 99999999999999999999876554555555543 34578999999999974332 122333444555553
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-05 Score=67.23 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=58.7
Q ss_pred EECCeEE-EEEEEeCCCc-------------cccccccccccccCCEEEEEEECCCHHHHHHHHHHH-HHHHHHcCCCCe
Q psy8722 58 NIAGKRL-NLAIWDTAGQ-------------ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV-KELKKMLGNDIC 122 (223)
Q Consensus 58 ~~~~~~~-~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p 122 (223)
.+.|... ...+.|.||- +....+...+..+.+++|+|+---.- +.-..-. ..+...-+.+..
T Consensus 405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrR 481 (980)
T KOG0447|consen 405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRR 481 (980)
T ss_pred eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCe
Confidence 3444444 5778899992 12345567788999999999853222 2222211 233444456788
Q ss_pred EEEEEeCCCccccccCCHHHHHHHHHHh
Q psy8722 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSV 150 (223)
Q Consensus 123 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (223)
.|+|+||.|+.+.+...++.++++....
T Consensus 482 TIfVLTKVDlAEknlA~PdRI~kIleGK 509 (980)
T KOG0447|consen 482 TIFVLTKVDLAEKNVASPSRIQQIIEGK 509 (980)
T ss_pred eEEEEeecchhhhccCCHHHHHHHHhcC
Confidence 9999999999887777778787776543
|
|
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=64.96 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.7
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCH-------HHHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE-------DSFEKVKNWVKELKKML----GNDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl 132 (223)
++|+.+|++|+...+..|..++.++.++|||+..+.- .+-+.+.+-+..+...- -..+.+|+++||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 6799999999999999999999999999999987652 12222333222222211 124789999999997
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.4e-07 Score=65.41 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=63.1
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.||+. +........+.++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+..... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 34433 3334445677899999999999876432211 111211 2468999999999843211 1122233333
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+..++.+|++++.|++++.+.+...+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4557899999999999999988887753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-05 Score=63.79 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=84.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCC--------------Ccc-------ccceeEEEEE---EEE-CCeEEEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEK--------------HIT-------TLQASFLNKK---LNI-AGKRLNLAI 68 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------------~~~-------~~~~~~~~~~---~~~-~~~~~~~~i 68 (223)
-.+=|.|+||.-+||||||++|......+. ..+ |+...|.+.. +.+ ++-.+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 356789999999999999999863222111 011 2222332222 223 567789999
Q ss_pred EeCCCc--------c--cccccc-cccc------------------cc-CC-EEEEEEECCC----HHHHHHHH-HHHHH
Q psy8722 69 WDTAGQ--------E--RFHALG-PIYY------------------RM-SN-GAVLVYDITD----EDSFEKVK-NWVKE 112 (223)
Q Consensus 69 ~D~~G~--------~--~~~~~~-~~~~------------------~~-~d-~~i~v~d~~~----~~s~~~~~-~~~~~ 112 (223)
+|+.|- . .-.++. .-++ .. +. ++++.-|-+- ++.+.... +.+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999981 1 000110 1111 11 12 3444444322 34444433 35555
Q ss_pred HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC--CCCHHHHHHHH
Q psy8722 113 LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM--NRGIEEMFLEL 172 (223)
Q Consensus 113 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i 172 (223)
+... ++|+++++|-.+-. .....+...++..+++++++.+++.. .+.+..+++.+
T Consensus 176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5554 78999999987632 22245667778888888887766542 23444444433
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-06 Score=66.93 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC---------------CeEEEEEEEeCCCccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA---------------GKRLNLAIWDTAGQER 76 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~~ 76 (223)
..+.++|.++|-|++|||||+|.|+.....+...|..+.+-....+.+. -....+.++|++|.-+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3478899999999999999999999777777777776666544444332 1234688999999443
Q ss_pred c----cccccc---ccccCCEEEEEEECCC
Q psy8722 77 F----HALGPI---YYRMSNGAVLVYDITD 99 (223)
Q Consensus 77 ~----~~~~~~---~~~~~d~~i~v~d~~~ 99 (223)
- ..+... -++.+|+++-|+++.+
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2 222222 3577999999988654
|
|
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.7e-07 Score=67.14 Aligned_cols=119 Identities=12% Similarity=0.174 Sum_probs=76.3
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH-------HHHHHHHHHHHHHHcC----CCCeEEEEEeCC
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS-------FEKVKNWVKELKKMLG----NDICLTIAGNKI 130 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ivv~nK~ 130 (223)
.++.+.+.|.+|+......|..++.++..++|.+.+++.+. -+.+++-...++.... .+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 44677888999998888889999999888888777665321 1112222222222211 467899999999
Q ss_pred Ccccc----------------ccCCHHHHHHHHHHh----CC------cEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 131 DLEKQ----------------RTVMQEDAEKYAQSV----GA------VHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 131 Dl~~~----------------~~~~~~~~~~~~~~~----~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
|+-++ .+...+.+.+|..++ +- -...+.|.+.+|+.-+|..+-+.+++..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 97321 111234444454332 21 1355788899999999999988887654
|
|
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-06 Score=63.12 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred eEEEEECCCCC--cHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE--EEEEEEeCCCccccccccccccccCCEE
Q psy8722 16 FKVVLLGEGCV--GKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR--LNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 16 ~~I~viG~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.-++|+|-+|+ ||.+|+++|....+.....+.....+..+++..+... +.+.+.-... .+.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd--e~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD--EKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc--hhccCCcccccceeeE
Confidence 35789999998 9999999999877776655555555655555433222 2222222221 1211122233556789
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
++|||++.......+..|+.......- -..+.++||.|-
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdr 121 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDR 121 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccc--hhheeccccccc
Confidence 999999999999999999886543211 134667899995
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.9e-06 Score=66.25 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=88.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC------------------ccccceeEEEE-------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH------------------ITTLQASFLNK------------------- 55 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~------------------- 55 (223)
--+++|+++|...+|||||+-.|+........ .+..|.++...
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 44789999999999999999666544433211 11222221110
Q ss_pred EEEECCeEEEEEEEeCCCccccccccc--cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGP--IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.-...+..-.+.|+|.+|+++|..... .--+..|...+++-++-.. ..-.++.+.. ...-.+|+++|++|+|+-
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccC
Confidence 000123334577889999998865432 2234467777777665421 1111111111 122368999999999984
Q ss_pred ccccCCHHHHHHH---HHH--------------------------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 134 KQRTVMQEDAEKY---AQS--------------------------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 134 ~~~~~~~~~~~~~---~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
-.+. ..+..+.+ .+. .-+|+|++|-.+|.|+.- +..+.+.+..+
T Consensus 287 PANi-LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R 359 (641)
T KOG0463|consen 287 PANI-LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLR 359 (641)
T ss_pred cHHH-HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCcc
Confidence 3321 22222222 111 124678999999999764 44444444433
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=60.34 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=52.2
Q ss_pred cccccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
..+..+|++++|+|+.++.+.. .+..|+... ..++|+++++||+|+..... .....+..+..+..++.+||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3567899999999998876543 344444332 13689999999999853321 233445556667789999999
Q ss_pred CCCC
Q psy8722 161 MNRG 164 (223)
Q Consensus 161 ~~~~ 164 (223)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8763
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-06 Score=63.12 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++++|++|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999854
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=66.89 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=65.2
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||. +........+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+..... .+...+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 46644 2333445677899999999999876443221 111111 2579999999999843211 1222222333
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999998887776543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0001 Score=53.09 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=78.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCC-Ccccccc------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA-GQERFHA------------ 79 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~~------------ 79 (223)
...+||.+-|+||+||||++.++...--... ... ..+....+.-++..+-|.+.|+. |...+.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--cee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999988763222111 111 12333444455666667777776 4221100
Q ss_pred -------------ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 80 -------------LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 80 -------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
..+..+..||+ +++|--.+--+ ...++...+......+.|++.++.+.+- . ..+++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr---~----P~v~~- 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR---H----PLVQR- 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC---C----hHHHH-
Confidence 01112233444 44564443211 1234555666666667898888887652 1 11222
Q ss_pred HHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
....+-.++. .+..|-+.+++.|...+
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 2333333333 44566667777776655
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.7e-06 Score=66.96 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMN 162 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 162 (223)
...++|.+++|+++..+-....+..++..+... +++.++|+||+||.... .+....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 358899999999997555555677776666654 57778999999996431 111222222 34678999999999
Q ss_pred CCHHHHHHHHH
Q psy8722 163 RGIEEMFLELS 173 (223)
Q Consensus 163 ~~i~~~~~~i~ 173 (223)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888774
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.8e-06 Score=68.97 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|||||||||.|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3899999999999999999843
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=68.16 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=34.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCcc---ccceeEEE--EEEEECCeEEEEEEEeCCCcccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF-NEKHIT---TLQASFLN--KKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~---~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
-++|+|.+|||||||||+|..... .....+ ..|.+.+. ..+.+.+. ..++||||-..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 378999999999999999985432 222222 22222221 12233322 247899996544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=63.99 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCccccccc----cccc--------cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q psy8722 63 RLNLAIWDTAGQERFHAL----GPIY--------YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (223)
.+.+.|+||||....... ...+ -...+..++|+|++... +.+... ..+.... -+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECC
Confidence 357889999996432211 1111 12467889999998542 233321 2222221 2446888999
Q ss_pred CccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|.... .-.+...+...+.|+.+++ +|++++++-
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95322 2234455677799998888 577776553
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998744
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.5e-06 Score=66.06 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=65.9
Q ss_pred CCCcc-ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||. +........+..+|++++|+|+.++.+... .++... .. +.|+++|+||+|+..... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 56754 223344566789999999999987644222 111111 11 579999999999853211 1222233334
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+++.+|++++.|++++.+.+.+.+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999998887776543
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-06 Score=70.39 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..+.|.+||.|||||||+||.|. ......+..|+.+.+|....+ .. .+.+.|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--SP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--CC---CceecCCCCcc
Confidence 36999999999999999999999 555667766777777655443 33 35677999954
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.8e-06 Score=64.07 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++++|++|+|||||+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 37889999999999999999854
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=72.92 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=64.7
Q ss_pred EEECCCCCcHHHHHHHHhhCCCC--CCCc--cccceeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc--
Q psy8722 19 VLLGEGCVGKTSVVLRYVEDKFN--EKHI--TTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPIY-- 84 (223)
Q Consensus 19 ~viG~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~-- 84 (223)
+|||++|+||||++..- +..|+ .... ...+.........+.+ .-.++||.|... ....|..+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 68999999999998543 22222 1110 1111111111222333 356779999321 12233322
Q ss_pred -------cccCCEEEEEEECCCH------H---HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 85 -------YRMSNGAVLVYDITDE------D---SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 85 -------~~~~d~~i~v~d~~~~------~---s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.+..|++|+.+|+.+- + ....+..-+.++.....-..|++|++||.|+..
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3557999999998662 1 122244456667776777899999999999844
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=68.78 Aligned_cols=118 Identities=19% Similarity=0.106 Sum_probs=79.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-----c-----------cccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-----I-----------TTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
.+.-+|.++-+-.+||||+-++.+....-... . ...|.+....-..+..+.+.+.++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 45668999999999999999987622111100 0 0112222222222233357888999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|.-.....++-.|++++|+|....---+...-|.+.-+ .++|.+.++||.|--.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 99888999999999999999877543344444555443 3789999999999533
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.3e-06 Score=68.22 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=36.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
.+++++|.+|||||||+|+|..... ..+..+.++.+. ..+.+.+ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999985332 233344444443 3333422 24688999944
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=65.83 Aligned_cols=92 Identities=26% Similarity=0.347 Sum_probs=60.8
Q ss_pred ccccccccccccCC-EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH----HHHHHHh
Q psy8722 76 RFHALGPIYYRMSN-GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA----EKYAQSV 150 (223)
Q Consensus 76 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~ 150 (223)
.|....... ..++ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+.. ..+++..
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 344433333 3444 889999998743 235555555443 5789999999999532 2233333 3345556
Q ss_pred CC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 151 GA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 151 ~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 57899999999999999998654
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=58.59 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----cc---cccccccccC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----FH---ALGPIYYRMS 88 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~---~~~~~~~~~~ 88 (223)
-+|.++|-|.+||||++..+.+.........+++.......+.+++ -++++.|.||.-. -. ...-...+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999986554433223333333333444555 4577779999321 11 1123345778
Q ss_pred CEEEEEEECCCHHHHHH
Q psy8722 89 NGAVLVYDITDEDSFEK 105 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~ 105 (223)
+.+++|.|+..+-+-..
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 99999999887655444
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=53.83 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=43.4
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..++. +++|--.+.... -..++..+......+.|++++.+|... .....++....+..++++ +.+|
T Consensus 94 l~~~~~--lllDE~~~~e~~-~~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~ 160 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELK-SPKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPEN 160 (174)
T ss_pred cCCCCE--EEEECCCcchhh-hHHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchh
Confidence 345555 677842111010 123445555554557899999998532 223344555556667766 3456
Q ss_pred HHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRM 176 (223)
Q Consensus 165 i~~~~~~i~~~~ 176 (223)
-+++.+.+.+.+
T Consensus 161 r~~~~~~~~~~~ 172 (174)
T PRK13695 161 RDSLPFEILNRL 172 (174)
T ss_pred hhhHHHHHHHHH
Confidence 667777776654
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.1e-06 Score=67.37 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
..++.++|.+|||||||||+|..... ..+..++++.+. ..+.+++. ..++||||-.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 34799999999999999999984321 123334444443 33334332 3688999953
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-06 Score=67.25 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred EEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHH
Q psy8722 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQED 142 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~ 142 (223)
.+.|.|+||++-..+.+-.-..-.|++++.+..++...-.+..+.+..+.-.. -..++++-||+|+..+.+. ..+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 46688999998654443332333578888887776422222222222222221 2578888999999654432 2244
Q ss_pred HHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 143 AEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 143 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+..|.+.- +.|++.+||-.+.|++-+.+.|...+....
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 55555433 568999999999999999999988775443
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-06 Score=66.18 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=93.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLN 58 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (223)
.++...+|+.++|+..+||||+-..++... ..+......+.......+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345778999999999999999875542110 0111111122223333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~ 134 (223)
... -.+.+.|.||+..|....-.-..+||..++|+++...+ .|+.--+......-+ ...-...++++||.|-..
T Consensus 154 te~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TEN--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ecc--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 334 35667799999988777666667899999999985432 233322222222111 122356888899999532
Q ss_pred c-c-cC----CHHHHHHHHHHhCC------cEEEecCCCCCCHHHHHH
Q psy8722 135 Q-R-TV----MQEDAEKYAQSVGA------VHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 135 ~-~-~~----~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~ 170 (223)
. + .. ..+....|...+|+ .|+.+|..+|.++.+...
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 1 11 12334444444442 488999999999887553
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=63.60 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred EEEEEEeCCCccccccc----cccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.++||+|....... ...+ ..+.|..++|+|+..... .+ .....+.... ..--+|+||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~-~~a~~f~~~~---~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AV-EQAREFNEAV---GIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HH-HHHHHHHhcC---CCCEEEEeeecCCCCc-
Confidence 46889999996532211 1111 125788899999876431 11 1112232221 2346788999974322
Q ss_pred CCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
=.+..++...+.|+.+++ +|++++++..
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 223444556788888887 5888876543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=60.03 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcccccccc----cc--------ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHALG----PI--------YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.|+||+|........ .. .-..+|..++|+|+... .+.+.. ...+.+.. -+--+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 678899999965432221 11 11237899999999753 222322 22333222 24568889999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
..... -.+.......+.|+.+++ +|++++++-
T Consensus 229 e~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 64332 233445556688888887 577776543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=56.73 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeC-CCcc--------------------
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT-AGQE-------------------- 75 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~-------------------- 75 (223)
||++.|++|+|||||++++...--... .+.. .+....+.-++..+-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999873221110 1111 122233334444555555565 3311
Q ss_pred --cccccccccccc--CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC
Q psy8722 76 --RFHALGPIYYRM--SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151 (223)
Q Consensus 76 --~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (223)
.+.......+.. .+.=++|+|--.+-- .....|.+.+......+.|++.++.+.. ...-++++....+
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~~~~ 149 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKRRPD 149 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHhCCC
Confidence 111111112222 133377888543210 1122356666666667789988888762 0122345566667
Q ss_pred CcEEEecCCCCCCH
Q psy8722 152 AVHFHTSAKMNRGI 165 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i 165 (223)
+.+++++..+.+.+
T Consensus 150 ~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 150 VKIFEVTEENRDAL 163 (168)
T ss_dssp SEEEE--TTTCCCH
T ss_pred cEEEEeChhHHhhH
Confidence 88888877655544
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.2e-05 Score=60.84 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-.++++|++|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 479999999999999999998543
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4e-05 Score=60.88 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++|.+|+|||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999973
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00067 Score=58.35 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=74.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC------CC----CCcccc---------cee--EEEEEEEE---------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF------NE----KHITTL---------QAS--FLNKKLNI---------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~------~~----~~~~~~---------~~~--~~~~~~~~---------~~~ 62 (223)
...-.|+|+|+.|+||||++..|...-. .. ...... +.. +......- .-.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3456889999999999999988753110 00 000000 000 00011000 012
Q ss_pred EEEEEEEeCCCcccccccccc---ccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 63 RLNLAIWDTAGQERFHALGPI---YYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
.+.++|+||+|.......... .+. .....++|++..- +...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 367889999995432211100 010 1234567777664 233334433333332 36678999999632
Q ss_pred CCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
..-.+.......+.++.+++. |+.|
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 234566667778888777665 5555
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.7e-05 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..++++|++|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=58.73 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=70.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC---CCCCccccceeE------------------EEEEEEE---------CCeE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASF------------------LNKKLNI---------AGKR 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~------------------~~~~~~~---------~~~~ 63 (223)
+.-.++|+|++|+||||++..|..... ........+.+. ......- .-..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345889999999999999999863211 100000000000 0000100 0122
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC-----CeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALG----PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-----ICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~p~ivv~nK~Dl 132 (223)
..+.++||+|........ ..+ .....-.++|++++... +.+...+..+....... -+--+|+||.|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 467889999955332221 111 12234458888887632 22222223333321100 123577799996
Q ss_pred cccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 133 EKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
... .=.+..+....+.|+.+++.
T Consensus 294 t~~----~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 294 ASN----LGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred CCC----ccHHHHHHHHHCcCeEEEec
Confidence 432 23445566777877766654
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.2e-05 Score=63.12 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
.+...-...+++.|+|.|++||||+||+|. .........++.+....... .+. .+.|.|.||.
T Consensus 244 ~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 244 CRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LDK---KIRLLDSPGI 307 (435)
T ss_pred ccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--ccC---CceeccCCce
Confidence 334445789999999999999999999999 55556666666665543332 222 4667799993
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=52.67 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccccccc----cccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
..+.++|++|...+... ...+ ....+.+++|+|...... ...+...+.+..+ ...+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 45778899996432111 1111 124899999999865432 2233344433322 356777999964322
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q psy8722 138 VMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (223)
-.+...+...++|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2223366666766543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00032 Score=55.84 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=66.0
Q ss_pred ccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 82 PIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
+.-..+.|-+++|+.+.+|+ +...+.+++-..... ++..++++||+|+.+......++.......++.+++.+|++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33445678888888888876 455566666665553 56677889999996654433345566677789999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQR 175 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~ 175 (223)
++.++.++.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999988776544
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=51.61 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
.+.+.|+||+|.... ...++..+|-++++....-.+.+.-++- ..+. ..=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 367889999985422 2347788999999988774333322221 1222 23368889987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccccc----ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 63 RLNLAIWDTAGQERFHALG----PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.+.+.|+||+|........ ..+ ..+.+-+++|+|+.-...- ......+.... .+--+|+||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCC
Confidence 3678899999954332111 111 2346789999998754322 11222333221 2556888999963
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00071 Score=51.81 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=32.9
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
...+++|.+|+|+|.+- .++...++........ + =.++.+|+||.|-
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e 197 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDE 197 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccc
Confidence 34477999999999985 4555555544444443 1 2689999999984
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=57.86 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (223)
-+.++++.|+|-||+|||||||++.... ......++.+..+.......+.. .+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp--~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP--PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC--ceEEecCCCc
Confidence 3568899999999999999999975322 22344555555554433323333 3667799993
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=41.37 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=30.2
Q ss_pred ccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 86 RMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+-.++++|++|+++. .+.+....++..++..+. ++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 447899999999985 456666678888888764 589999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00041 Score=49.45 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.0
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccCCEEEEEEEC
Q psy8722 20 LLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA--GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDI 97 (223)
Q Consensus 20 viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (223)
.-|.+|+|||++--.+...-.. ....+.- ...... .-.+.+.++|+|+.. .......+..+|.++++.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~-----vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLL-----LDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEE-----EECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC
Confidence 4477899999997665421111 1011111 111111 111568899999743 23334578889999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 98 TDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
+. .++......+..+.... ...++.+++|+.+-
T Consensus 77 ~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 77 EP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred Ch-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 74 45555455455554432 34577899999874
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00024 Score=55.63 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=42.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCc----cccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI----TTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
.+||+.+|..|.|||||+..|.+..+..... ++.........+.-.+..+++.+.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 6899999999999999999999877754432 2333332233333345567888999998
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00078 Score=45.29 Aligned_cols=82 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEEC-CCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 18 VVLLG-EGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
|++.| ..|+||||+...+...-.... .+. ..+..+.. +.+.++|+|+.... .....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~v-------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRV-------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcE-------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 468999999877652211111 111 11112211 67889999986432 23366778999999998
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 97 ITDEDSFEKVKNWVK 111 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (223)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 76 456666666655
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00067 Score=57.31 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCC------Ccc--------ccceeEEEEEEEE----------------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------HIT--------TLQASFLNKKLNI----------------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~------~~~--------~~~~~~~~~~~~~----------------~~~ 62 (223)
.+--|+.+|-+..-|||||-..|....-.-. ... ..+.++...-+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 3445889999999999999999863222110 001 1111221111111 244
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.+.+.++|.|||-+|.+.....++-.|++++|+|.-+.--.+.-.-+.+.+. ..+.-+++.||.|-
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence 5788899999999999999999999999999999876432222111223333 23445678899994
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=4.1e-05 Score=62.57 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc--ccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH--ALGPIYY 85 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~ 85 (223)
......++|-|.+||.||+||||+||.|.......- .|..|.+....++..-. .+-++|+||-.... +.....+
T Consensus 300 kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivL 375 (572)
T KOG2423|consen 300 KLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVL 375 (572)
T ss_pred hhccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHh
Confidence 345567899999999999999999999986555422 23333322222222211 35677999954332 3333333
Q ss_pred ccCCEEEEEEECCCHHH
Q psy8722 86 RMSNGAVLVYDITDEDS 102 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s 102 (223)
+ +++=|=.+.+++.
T Consensus 376 k---GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 K---GVVRVENVKNPED 389 (572)
T ss_pred h---ceeeeeecCCHHH
Confidence 3 4666777777653
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=43.09 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=43.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccCCEEEEEEE
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL-GPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (223)
+++.|..|+||||+...+...-.... . +...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g------~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG------K----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC------C----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988763221111 1 111122 5788899985432221 1345567899999998
Q ss_pred CCCH
Q psy8722 97 ITDE 100 (223)
Q Consensus 97 ~~~~ 100 (223)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0009 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..-.+++.|++|+|||++++.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=56.16 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccccccc-c---ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-G---PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... . ..+ .-..+.+++|+|.... .........+.... ...-+|+||.|-....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 56889999995432111 1 111 1246778999998653 22333333344322 1235677999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+.......+.|+.++..
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1255566777888766544
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0017 Score=43.96 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred EEEEC-CCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 18 VVLLG-EGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 18 I~viG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
|+++| ..|+||||+...|...-.... +.+........+... .+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34544 477999998766642111110 111111111111111 6788899985432 23446688999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEEeC
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNK 129 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 129 (223)
.+. .+...+..+++.++....+ ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 764 5677777777777765433 4567777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.021 Score=41.88 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=92.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+...|+++|..+.++..|.+.+...... .....+... -.|-.... ...-...|.+
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a~-----------sLPLp~e~----~~lRprIDlI 68 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLAK-----------SLPLPSEN----NNLRPRIDLI 68 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEec-----------cCCCcccc----cCCCceeEEE
Confidence 466889999999999999999999842110 111111110 11111111 1112458999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|++|.....|+..++.-+..+...+-.+ .+.++.+-....+...+...++.+++..+..|++.+.-...++. ..
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~----~~ 143 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR----TS 143 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH----HH
Confidence 99999999999999887666654433233 44555666665666778899999999999999999877665554 44
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
+++++++..
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 555555443
|
CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival []. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.006 Score=49.71 Aligned_cols=88 Identities=19% Similarity=0.094 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHHHH-HHH-HHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSFEK-VKN-WVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+...++++.|..........++ -..|+++-|+|+..-..... +.. ....+. ..=++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 5567788888443322221111 23588999999876433222 121 111121 1337889999997
Q ss_pred ccccCCHHHHHHHHHHhC--CcEEEecC
Q psy8722 134 KQRTVMQEDAEKYAQSVG--AVHFHTSA 159 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa 159 (223)
+... .+..++....++ ++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6653 455555555555 46777766
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0009 Score=56.52 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=49.5
Q ss_pred EEEEEEeCCCccccccc-cc---cc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-GP---IY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... .. .+ .-+.+.+++|+|+... .....+...+.... ...-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 56889999995432211 11 11 2347888999998753 23333344444332 1346778999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+...+...++|+.++..
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 1256667777888766554
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
|
... |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=52.95 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999855
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+|||||.+.|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0066 Score=49.49 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=44.6
Q ss_pred EEEEEEeCCCcccccccccccc--------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYY--------RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
....++++.|..........++ -..+++|.|+|+.+-... +........+.. ..=+|++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~--~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ--MNQFTIAQSQVG---YADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhh--ccccHHHHHHHH---hCCEEEEeccccCCH
Confidence 4567789999654333332221 124789999998753221 111111111111 123688899998653
Q ss_pred ccCCHHHHHHHHHHhC--CcEEEec
Q psy8722 136 RTVMQEDAEKYAQSVG--AVHFHTS 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~S 158 (223)
. +.+.+....++ ++++.++
T Consensus 166 ~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 A----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHhCCCCEEEEec
Confidence 2 44555555444 3555544
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0056 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=50.8
Q ss_pred EEEEEEeCCCccccc----cccccccc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 64 LNLAIWDTAGQERFH----ALGPIYYR---MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
+.+.|+||+|..... .....++. ...-.++|++++-.. ..+......+... + +--+|+||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence 568899999964332 11222222 234567788876432 2333322333221 1 23578899996332
Q ss_pred cCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 137 TVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.-.+..++...+.|+.+++. |++|
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~--Gq~V 396 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTN--GQRV 396 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeC--CCCC
Confidence 23566777888888877765 4554
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00097 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=54.79 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=46.6
Q ss_pred EEEEEEeCCCccccccc----cccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... ...+.. ..+..++|.++.. ....+...+..+.. --+--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCCC--
Confidence 57889999996433221 122222 3466677777632 22233332222221 1234677899996432
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.=.+..++...+.|+.+++.
T Consensus 358 --~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEec
Confidence 23345567778888777665
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00029 Score=52.10 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+|+|+|++|+|||||.+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00039 Score=42.01 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..+|.|+.|+|||||+.++..--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999986433
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00031 Score=50.05 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+++|++|+|||||++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
|
... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00043 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++||+|+|||||++.+-.-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998643
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0044 Score=51.76 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCcccccc----ccccccccC--C-EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 63 RLNLAIWDTAGQERFHA----LGPIYYRMS--N-GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+.+.++||+|...... ....++... + -.++|+|++... ..+...+..+... -+--+++||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 35788999999543221 112222221 2 578999998652 3333332322211 134577899995332
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.=.+..++...+.|+.+++. |+++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit~--Gq~v 351 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVTD--GQIV 351 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEeC--CCCC
Confidence 23345566777888766654 5555
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=53.44 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=71.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCC-ccccceeE---------------EEEEEEE------------CCe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKH-ITTLQASF---------------LNKKLNI------------AGK 62 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~-~~~~~~~~---------------~~~~~~~------------~~~ 62 (223)
.+.-.|+++||+||||||-+-.|...-. .... ...++.|. ....+.. .-.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 3466899999999999999888753222 1111 01111110 0001110 112
Q ss_pred EEEEEEEeCCCccccccc----cccccccC--CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 63 RLNLAIWDTAGQERFHAL----GPIYYRMS--NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
.+.++++||.|...+... ...++... .-..+|++++-. ...+...+..++.. + .--+++||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~-i~~~I~TKlDET~s- 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---P-IDGLIFTKLDETTS- 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---C-cceeEEEcccccCc-
Confidence 357889999996654432 23333222 334567777653 34455444444432 1 23567899995332
Q ss_pred cCCHHHHHHHHHHhCCcEEEecC
Q psy8722 137 TVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.=....+..+.+.|+.+++-
T Consensus 354 ---~G~~~s~~~e~~~PV~YvT~ 373 (407)
T COG1419 354 ---LGNLFSLMYETRLPVSYVTN 373 (407)
T ss_pred ---hhHHHHHHHHhCCCeEEEeC
Confidence 23344556666766655543
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00035 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999843
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00044 Score=53.08 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+++||+|||||||+|.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
|
|
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
--|++-|+-|||||||.+.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999873
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0007 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|+++|++|+|||||+|.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988643
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00071 Score=42.01 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998744
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK10646 ADP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|++-|+-|+|||||.+.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999743
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0045 Score=45.96 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+..++..+... +.++.+|+|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 346788999997532 223345688999999999884 3566666666666543 4678899999986432 346
Q ss_pred HHHHHHHHhCCcEEE
Q psy8722 142 DAEKYAQSVGAVHFH 156 (223)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (223)
+.+++++..+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >COG0802 Predicted ATPase or kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=45.40 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~ 40 (223)
.--|++-|+-|||||||.+-+...-.
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34578899999999999999984333
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0019 Score=48.70 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+-++|+||.|+||||+.+.+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHH
Confidence 4668899999999999999875
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=50.23 Aligned_cols=86 Identities=21% Similarity=0.095 Sum_probs=46.0
Q ss_pred EEEEEEeCCCcccccccc----cc--ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHALG----PI--YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
..+.|+||+|........ .. ....+|.+++|+|+.... ........+.... ...-+|.||.|.....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence 368899999965432111 11 133578899999987642 2222222233221 1235678999953221
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
=.+..+....+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2234445566666655443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00084 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999988754
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00082 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
-+..++++|+|++|+|||+|+..++.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998874
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0013 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
.++++|++|+|||||+|-+.+=..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 7899999999999999988654443
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0013 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+++..-|+|+|++|+|||||++.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999999974
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00097 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+|+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=47.54 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=51.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh----CCCCCC------Ccc-----------ccceeEEEEEEEE-------------C
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE----DKFNEK------HIT-----------TLQASFLNKKLNI-------------A 60 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~----~~~~~~------~~~-----------~~~~~~~~~~~~~-------------~ 60 (223)
.--|.++|-.|+||||.+-.|.. ..+... +.+ -.+..++...... .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 44678999999999998877531 111110 000 0122222222221 2
Q ss_pred CeEEEEEEEeCCCccccc-ccccc-----ccccCCEEEEEEECCCHHHHHHH
Q psy8722 61 GKRLNLAIWDTAGQERFH-ALGPI-----YYRMSNGAVLVYDITDEDSFEKV 106 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~ 106 (223)
..++.++|.||+|..... ++... -.-+.|-+|+|.|++-...-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 455889999999944322 11111 12457999999999876654443
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00099 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999643
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.001 Score=47.26 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+|++|+|||||++.|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00093 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998865
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0014 Score=45.74 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
-.++++|++|+|||++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999755443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999743
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0012 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|+.|+|||||++.|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0011 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
|
... |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0011 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.--.+++||+|+|||||++.|-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHH
Confidence 3456899999999999999885
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0012 Score=49.14 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+||||+.+.|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.034 Score=40.96 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=51.7
Q ss_pred EEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH
Q psy8722 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE 144 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 144 (223)
.+.|+|+|+.... .....+..+|.+|++++.+. .+...+..++..+... ......+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 5888999985432 23345678999999998875 3455555566655542 123567889999853221 222234
Q ss_pred HHHHHhCCcEE
Q psy8722 145 KYAQSVGAVHF 155 (223)
Q Consensus 145 ~~~~~~~~~~~ 155 (223)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55555676654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0015 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+..-|+|+|++|+|||||++.|..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3556688999999999999999974
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0012 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+|++||||||+.+.|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999885
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.++|+|+.|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG3929|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00038 Score=53.90 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccc--c--
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYR--M-- 87 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~--~-- 87 (223)
..+..|++.|..+. |++|++.....-... .++...+|......-.+ ..-...+|+.+|......+..--+. +
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 56788999998776 889988874443322 45555555443332222 2224679999986544433322221 1
Q ss_pred CCEEEEEEECCCHHH-HHHHHHH
Q psy8722 88 SNGAVLVYDITDEDS-FEKVKNW 109 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s-~~~~~~~ 109 (223)
.=++|++.|++++.. |..++..
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~ 142 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENL 142 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHH
Confidence 125789999999643 3334433
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0013 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998743
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0017 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+.+.|+|.|++|+|||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998753
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.002 Score=47.96 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
+.=.++++|+.|+|||||++.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33478999999999999999887543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0046 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|+|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988743
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0016 Score=48.07 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|+|++|+||||+.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998876
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0015 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+|++|+|||||++.|..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999985
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.002 Score=47.55 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...-+.|+|++|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3446899999999999999999843
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0018 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-.++++|++|+|||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999998753
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0015 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++||.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0017 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0017 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+++|++|+||||+.++|.
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999886
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0016 Score=48.56 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999987
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0025 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-+++++|.+|+|||||+|.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999853
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0018 Score=49.03 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|.|++|+|||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0014 Score=48.54 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
..=++|.||+|+|||||++.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998544
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...+|+|.|++|+|||||++.|...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3578999999999999999999844
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0022 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCCC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~ 40 (223)
++++||+|+|||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999875433
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0089 Score=47.84 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc---c---------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---F--------- 77 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~--------- 77 (223)
++..+--+++++|++|.|||+++++|...-. ...... . ..+.|.....|.... +
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3344556899999999999999999984322 111111 1 112344445543111 0
Q ss_pred ------------ccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCC
Q psy8722 78 ------------HALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLG-NDICLTIAGNKI 130 (223)
Q Consensus 78 ------------~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 130 (223)
.......++....=++++|--. ..+.......++.++...+ -.+|++.+|++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 0111234455677788888543 2344445555666655533 468999998763
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0027 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0029 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0021 Score=48.25 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.=|+|+||+|+|||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34889999999999999999853
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.002 Score=50.32 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999986
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+|+++|+||+||||+.+.+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999886
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0023 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+++|.+|+||||+.+.+.
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999885
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0031 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.003 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0032 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.003 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999854
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0028 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+-|+|.|++|+|||||.+.|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36788899999999999999974
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0026 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+|++|+||||+.+.|.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0036 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7889999999999999988754
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0034 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0021 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++|+||||+.+.|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0085 Score=49.13 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...+|+|.|++|+|||||++.|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHh
Confidence 367999999999999999999874
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0033 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999988643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0035 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0035 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0025 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|++||||||+.+.|.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999875
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0023 Score=49.30 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|++.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999874
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 223 | ||||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 2e-79 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 3e-79 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-78 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 5e-40 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 9e-40 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 1e-39 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 1e-38 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 1e-38 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 1e-38 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 1e-38 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-38 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 2e-38 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 4e-38 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 4e-38 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 5e-38 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 5e-38 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 8e-38 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 1e-37 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 1e-37 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-37 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 7e-36 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 6e-34 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 7e-34 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-33 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 4e-33 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-32 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-32 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 3e-32 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 4e-32 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 5e-32 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 5e-32 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-32 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 5e-32 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 6e-32 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 6e-32 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 7e-32 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 8e-32 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-31 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 2e-31 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-31 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 2e-31 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 2e-31 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-31 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 3e-31 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 3e-31 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 4e-31 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 4e-31 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 4e-31 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 6e-31 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 7e-31 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 1e-30 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 1e-30 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 1e-30 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-30 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 2e-30 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 3e-30 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 5e-30 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 1e-29 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 1e-29 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 3e-29 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 4e-29 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 5e-29 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 7e-29 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 1e-28 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 2e-28 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 2e-28 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 2e-28 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 2e-28 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 4e-28 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 5e-28 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 6e-28 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 7e-28 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-27 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-27 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 2e-27 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 2e-27 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 3e-27 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 3e-27 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 4e-27 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 7e-27 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 1e-26 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 1e-26 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 5e-26 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 6e-26 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-25 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-25 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 1e-25 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 2e-25 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 3e-25 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 4e-25 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 5e-25 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 5e-25 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 5e-25 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 7e-25 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 9e-25 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 2e-24 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 2e-24 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 3e-24 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 4e-24 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 9e-24 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 4e-23 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 3e-19 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 3e-19 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 5e-19 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 5e-19 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 5e-19 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 5e-19 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 5e-19 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 6e-19 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 6e-19 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 6e-19 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 6e-19 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 6e-19 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 6e-19 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 7e-19 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 7e-19 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 7e-19 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 7e-19 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 7e-19 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 7e-19 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 7e-19 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 8e-19 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 8e-19 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 1e-18 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 1e-18 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 2e-18 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 2e-18 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 2e-18 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 3e-18 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 3e-18 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 3e-18 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 3e-18 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 3e-18 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 3e-18 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 3e-18 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 3e-18 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 3e-18 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 4e-18 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 5e-18 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 5e-18 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 6e-18 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 6e-18 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 6e-18 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 6e-18 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 6e-18 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 7e-18 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 7e-18 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 7e-18 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 7e-18 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 8e-18 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 9e-18 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 9e-18 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 9e-18 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 1e-17 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 1e-17 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 1e-17 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 2e-17 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 2e-17 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 2e-17 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 2e-17 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 3e-17 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 3e-17 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 3e-17 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 3e-17 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 4e-17 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 4e-17 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 5e-17 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 6e-17 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 6e-17 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 6e-17 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 7e-17 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 7e-17 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 7e-17 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 8e-17 | ||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 8e-17 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 8e-17 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 9e-17 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 9e-17 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 9e-17 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 9e-17 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 9e-17 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 1e-16 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 1e-16 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 1e-16 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 1e-16 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 1e-16 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 1e-16 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 1e-16 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 1e-16 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 1e-16 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 1e-16 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 1e-16 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 1e-16 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 1e-16 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 1e-16 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 2e-16 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 2e-16 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 2e-16 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 2e-16 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 2e-16 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 3e-16 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 4e-16 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 5e-16 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 6e-16 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 7e-16 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 7e-16 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 7e-16 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 7e-16 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 8e-16 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 8e-16 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 8e-16 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 8e-16 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 8e-16 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 9e-16 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 9e-16 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 9e-16 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 9e-16 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 1e-15 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 1e-15 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 1e-15 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 1e-15 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 1e-15 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 1e-15 | ||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 1e-15 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 1e-15 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 1e-15 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 1e-15 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 1e-15 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 2e-15 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-15 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 2e-15 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 2e-15 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 2e-15 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 2e-15 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 2e-15 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 2e-15 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 2e-15 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 3e-15 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-15 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 3e-15 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-15 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 5e-15 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 5e-15 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 6e-15 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 6e-15 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 7e-15 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 7e-15 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 8e-15 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 8e-15 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 8e-15 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 8e-15 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 8e-15 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 9e-15 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 9e-15 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 1e-14 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 1e-14 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 2e-14 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 3e-14 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 3e-14 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 3e-14 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 2e-13 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 3e-13 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 4e-13 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 5e-13 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 4e-12 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 4e-12 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 1e-11 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 1e-10 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 2e-10 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 2e-10 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 5e-10 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 5e-10 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 8e-10 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 1e-09 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 1e-08 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 1e-08 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 1e-08 | ||
| 3cbq_A | 195 | Crystal Structure Of The Human Rem2 Gtpase With Bou | 2e-08 | ||
| 4aii_A | 180 | Crystal Structure Of The Rat Rem2 Gtpase - G Domain | 7e-08 | ||
| 2nzj_A | 175 | The Crystal Structure Of Rem1 In Complex With Gdp L | 1e-07 | ||
| 3q85_A | 169 | Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp | 1e-07 | ||
| 2gjs_A | 176 | The Crystal Structure Of Human Rrad In Complex With | 2e-07 | ||
| 3q72_A | 166 | Crystal Structure Of Rad G-Domain-Gtp Analog Comple | 2e-07 | ||
| 2dpx_A | 174 | Crystal Structure Of Human Rad Gtpase Length = 174 | 2e-07 | ||
| 2g3y_A | 211 | Crystal Structure Of The Human Small Gtpase Gem Len | 9e-07 | ||
| 2ht6_A | 174 | Crystal Structure Of Human Gem G-Domain Bound To Gd | 1e-06 | ||
| 2yc2_C | 208 | Intraflagellar Transport Complex 25-27 From Chlamyd | 2e-06 | ||
| 2cjw_B | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 2e-06 | ||
| 2cjw_A | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 3e-06 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 2e-05 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-05 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 3e-05 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 3e-05 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 3e-05 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 3e-05 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 3e-05 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 4e-05 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 4e-05 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 4e-05 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 4e-05 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 7e-05 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 7e-05 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 1e-04 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 1e-04 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 1e-04 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-04 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 1e-04 | ||
| 3dpu_A | 535 | Roccor Domain Tandem Of Rab Family Protein (Roco) L | 2e-04 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-04 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-04 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 3e-04 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 3e-04 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-04 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 4e-04 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 4e-04 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 4e-04 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 7e-04 |
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195 | Back alignment and structure |
|
| >pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175 | Back alignment and structure |
|
| >pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169 | Back alignment and structure |
|
| >pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176 | Back alignment and structure |
|
| >pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166 | Back alignment and structure |
|
| >pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211 | Back alignment and structure |
|
| >pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208 | Back alignment and structure |
|
| >pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 4e-88
Identities = 134/168 (79%), Positives = 152/168 (90%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTL ASFL KKLNI GKR+NLAIWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKI
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DLEK+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 4e-83
Identities = 81/180 (45%), Positives = 113/180 (62%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK 62
++ L S+ KV LLG+ VGK+S+V R+V+D F+ T+ ASF+ K + +
Sbjct: 11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC 122
IWDTAGQERFH+L P+YYR S AV+VYDIT +DSF +K WVKELK+ +I
Sbjct: 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ IAGNK DL R V +DA++YA+S+GA+ TSAK IEE+F +S+++
Sbjct: 131 MAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 1e-82
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 12/220 (5%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M+ + FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + +
Sbjct: 4 MSTG-GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ + L +WDTAG ERF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+
Sbjct: 63 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK DL +R V E+ E+ A+ + + TSAK ++++F ++ +
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 182 EFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
D + R +++ ++ E ++ GC L
Sbjct: 183 TQDRS-----------REDMIDIKLEKPQEQPVSEGGCLL 211
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 2e-82
Identities = 77/168 (45%), Positives = 107/168 (63%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S+ KV LLG+ VGK+S++ R+VED F+ T+ ASF+ K + + IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAG ERF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DL R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 2e-81
Identities = 70/178 (39%), Positives = 113/178 (63%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
S+ + + + K+VLLG+ GK+S+VLR+V+D+F E +T+ A+F ++ L + +
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT 124
IWDTAGQER+H+L P+YYR + A++V+D+T++ SFE+ K WV+EL+ ++ +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+AGNK DL R V EDA+ YAQ G TSAK ++E+F E+++R+
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 8e-81
Identities = 69/168 (41%), Positives = 114/168 (67%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
+ FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWD
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKI 130
TAGQER+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
DL +R V ++A+ YA + TSAK + + E+F+ +++++ +
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 3e-74
Identities = 55/166 (33%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ K+V++G G VGK+S++ RY + F + + T+ FL +++ + + + L +WDTAG
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QE F A+ YYR + VLV+ TD +SFE + +W +++ DI + NKIDL
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLL 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ E+AE A+ + + TS K + + E+F L+++ L+K
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 6e-74
Identities = 61/175 (34%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M++ + FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + +
Sbjct: 3 MSSG--DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ + L +WDTAGQERF +L P Y R S AV+VYDIT+ +SF + W+ +++ G+D+
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ + GNK DL +R V E+ E+ A+ + + TSAK ++++F ++ +
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 4e-71
Identities = 45/170 (26%), Positives = 91/170 (53%), Gaps = 1/170 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTL-QASFLNKKLNIAGKRLNLAIWDTA 72
++K+ L+G+G VGKT+ + R ++ +F + + T+ + L+ G + +WDTA
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQE+ L +YY ++GA+L +D+T + + + WVKE + ++GN+ + + NKID+
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ ++ + ++ + + +F SAK FL L++ +
Sbjct: 130 KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 5e-70
Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
M++ D FK+VL+G+ VGK++++ R+ +++FN +T+ F + L I G
Sbjct: 1 MSSE-DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
KR+ IWDTAGQER+ A+ YYR + GA++VYDI+ S+E +W+ EL++ +++
Sbjct: 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK DL R V E+++ +AQ + TSA + +++ F EL + +K
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179
Query: 182 E-----FDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ D + + + + + + + CC
Sbjct: 180 KHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 8e-70
Identities = 65/207 (31%), Positives = 117/207 (56%), Gaps = 8/207 (3%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L IWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + GNK DL+
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
+R V + A+++A + TSA + +E+ FL +++++ E + + +
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ----QNLNETT 182
Query: 194 RGSMRRNVVVVEDEDLPTSSSTKSGCC 220
+ + V ++ S + GCC
Sbjct: 183 QKKEDKGNVNLKG----QSLTNTGGCC 205
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-69
Identities = 48/181 (26%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA++ FK+VL+G+G GKT+ V R++ +F +K++ TL +
Sbjct: 4 MASAAQGEPQ--VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR 61
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
+ +WDTAGQE+F L YY + A++++D+T +++ V NW ++L ++ +I
Sbjct: 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENI 120
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + GNK+D++ ++ + + + ++ SAK N E+ FL L+++++
Sbjct: 121 PIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178
Query: 182 E 182
Sbjct: 179 L 179
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 5e-69
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + I
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICLT 124
WDTAGQERF +LG +YR ++ VLV+D+T ++F+ + +W E +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
+ GNKIDLE ++ + +F TSAK +E+ F +++ L++ E +
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
Query: 185 LAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCC 220
L + ++ + + ++ C
Sbjct: 182 LYNEFP---------EPIKLDKNE--RAKASAESCS 206
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 9e-69
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 11/192 (5%)
Query: 2 MANSLDRNSSST-----------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA 50
M +S + S+ + FKVVL+GE VGKT+++ R+ ++F+ TT+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60
Query: 51 SFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV 110
F + + + + IWDTAG ER+ A+ YYR + GA+LV+D+T ++ V+ W+
Sbjct: 61 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 120
Query: 111 KELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170
KEL I + + GNK DL + R V E+A +A++ G + TSA + +E F
Sbjct: 121 KELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180
Query: 171 ELSQRMLEKAQE 182
+ + + K +
Sbjct: 181 TVLKEIFAKVSK 192
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 2e-68
Identities = 63/188 (33%), Positives = 112/188 (59%), Gaps = 7/188 (3%)
Query: 2 MANSLDRNSSST-------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN 54
M +S + S+ Y FK +++G+ VGK+ ++L++ + +F H T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60
Query: 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK 114
+ +NI GK++ L IWDTAGQE F ++ YYR + GA+LVYDIT ++F + +W+++ +
Sbjct: 61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120
Query: 115 KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+ +++ + + GNK DLE +R V +E+ E +A+ G + TSAK +EE F+ ++
Sbjct: 121 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
Query: 175 RMLEKAQE 182
+ K Q+
Sbjct: 181 EIYRKIQQ 188
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 3e-68
Identities = 59/189 (31%), Positives = 100/189 (52%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSR 193
R V ++A +A+ TSA + +EE F + + + +A +
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183
Query: 194 RGSMRRNVV 202
+
Sbjct: 184 SPGNNVVDI 192
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-68
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ + FKV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IW
Sbjct: 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICLTI 125
DTAGQERF +L +YR S+ +L + + D SF+ + NW KE I
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEK 179
GNKID+ +R V E+A+ + + G + TSAK + F E +R+L
Sbjct: 122 LGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 5e-68
Identities = 56/165 (33%), Positives = 101/165 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK +++G+ VGK+ ++ ++ E KF T+ F + + ++G+++ L IWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DLE
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
QR V E+A+++A+ G + SAK +E+ FLE ++++ +
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 5e-68
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTA 72
K+V+LG+G GKTS+ + ++ F +++ T+ F +++ + G + L IWD
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML---GNDICLTIAGNK 129
GQ + Y + G +LVYDIT+ SFE +++W +KK+ + + GNK
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
IDLE RT+ E ++ Q G SAK + F +++ +L
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 8e-68
Identities = 64/169 (37%), Positives = 109/169 (64%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK+VL+G VGKT +V R+ + F T+ F+ K + I G+++ L IWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR +N +L YDIT E+SF + W++E+++ N + + GNKIDL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
++R V Q+ AE+++++ + TSAK + +E++FL+L+ R++ +A++
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 9e-68
Identities = 56/169 (33%), Positives = 100/169 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK +++G GK+ ++ +++E+KF + T+ F ++ +N+ GK + L IWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR + GA+LVYDIT +++ + W+ + + + +I + + GNK DL+
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V +A ++AQ + TSA +EE FL+ ++ +L K
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 1e-67
Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 8/189 (4%)
Query: 2 MANSLDRNSSST--------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL 53
M +S + S+ Y FK++L+G VGKTS + RY +D F ++T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
K + KR+ L IWDTAGQER+ + YYR + G +L+YDI +++SF V++W ++
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 114 KKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173
K ++ + + GNK DLE +R V ED + A +G F SAK N ++++F L
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 174 QRMLEKAQE 182
+ EK E
Sbjct: 181 DVICEKMNE 189
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 2e-67
Identities = 57/169 (33%), Positives = 101/169 (59%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L IWDTAG
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GNK DL+
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V +A ++AQ + TSA +EE F++ ++++L K +
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 2e-67
Identities = 59/169 (34%), Positives = 96/169 (56%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
R+ Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK +
Sbjct: 21 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
IWDTAG ER+ A+ YYR + GA+LVYDI ++E V+ W+KEL+ ++I + +
Sbjct: 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
GNK DL R V ++A +A+ G TSA + +E F +
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 3e-67
Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
D + + FK+VL+G+ VGKT VV R+ F+E+ +T+ F K L I GKR+ L
Sbjct: 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
IWDTAGQERF + YYR +NGA+L YDIT SF V +W+++++K G++I +
Sbjct: 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQE 182
GNK DL + R V +A+ A+ + TSAK + +EE FL ++ ++ +
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 3e-67
Identities = 59/166 (35%), Positives = 105/166 (63%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++ V A+++A S+G TSAK +E+ F+ ++ + ++
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 4e-67
Identities = 66/180 (36%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLN-LA 67
+S KV++LG+ VGKTS++ RYV DK+++++ T+ A FL K++ + G ++ +
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQ 61
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK----MLGNDICL 123
+WDTAGQERF +LG +YR ++ VLVYD+T+ SFE +K+W E
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 124 TIAGNKIDLEK-QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQ 181
I GNKID E+ ++ V ++ A++ A+S+G + TSAK ++ F E+++ L++ Q
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 7e-67
Identities = 61/177 (34%), Positives = 108/177 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGK+ ++LR+ +D + E +I+T+ F + + + GK + L IWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+TD++SF VK W++E+ + ++ + GNK DL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
++ V A+++A S+G TSAK +E+ F+ ++ + ++ A +E
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 191
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 1e-66
Identities = 74/188 (39%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA + D Y FK++L+G+ VGKT V+ R+ ED FN I+T+ F + + + G
Sbjct: 1 MAKTYD------YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG 54
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI 121
KR+ L IWDTAGQERF + YYR + G +LVYDIT+E SF+ ++NW++ +++ D+
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 122 CLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
I GNK D+ +R V +E EK A G TSAK N +E F L++ + K
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 182 EFDLAKAS 189
+ A A+
Sbjct: 175 KNWKATAA 182
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-66
Identities = 61/169 (36%), Positives = 98/169 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
++R V E + A+ +G F SAK N + + F L + +K +
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-66
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 6/179 (3%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
++ SS ++K+VL G+ VGK+S ++R +++F E TL F K L + G+R L
Sbjct: 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVL 79
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
+WDTAGQERF ++ Y+R ++G +L+YD+T E SF ++ WV ++ + + +
Sbjct: 80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLV 139
Query: 127 GNKIDL------EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
GNK D+ E Q+ V EK A + GA+ TSAK I E L L++ + ++
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 2e-66
Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK++++G+ VGK+S++LR+ ++ F+ +ITT+ F + + I G+++ L IWDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR ++G ++VYD+T +SF VK W+ E+ + +D+C + GNK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDDP 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+++ V EDA K+A +G F TSAK N +EEMF +++ +L ++
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 3e-66
Identities = 65/177 (36%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ K++++GE VGK+S++LR+ +D F+ + T+ F K +++ G + LAIWDTAG
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDL 132
QERF L P YYR + G +LVYD+T D+F K+ NW+ EL+ NDI + GNKID
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
E R V + + K+A+ + SAK G++ F EL +++++ ++ +
Sbjct: 134 EN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 189
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 3e-66
Identities = 62/179 (34%), Positives = 98/179 (54%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
ER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS 192
+R V E + A +G F SAK N +++ F L + EK E ++
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVT 185
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 5e-66
Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ +V+++G VGKTS++ R+ +D F E +T+ F K + + GK++ L IWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF+++ YYR + G +LVYDIT +++F+ + W+K + K D L + GNK+D E
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 134 KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEK 179
R + ++ EK+AQ + + F SAK N ++E+FL+L +L+K
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 1e-65
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L IWDTAG
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDITDE +F +K W K + + ++ L + GNK D+E
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
R V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 122 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-65
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
++ S S K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I
Sbjct: 6 TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
GK++ L +WDTAGQERF + YYR + G +LVYD+TDE +F +K W K + + ++
Sbjct: 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
L + GNK D+E R V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 126 AQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
Query: 181 QEFDLAKASE 190
L
Sbjct: 185 DSNKLVGVGN 194
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-65
Identities = 58/170 (34%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+FKV+L+G+ VGKT +++R+ + F I+T+ F NK L++ G ++ L +WDTA
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERF ++ YYR ++ +L+YD+T++ SF+ ++ W+ E+ + +D+ L + GNK+D
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS 128
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+R V +ED EK A+ G TSAK ++ F +++ + ++ +
Sbjct: 129 AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-64
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+VLLGE VGK+S+VLR+V + F E T+ A+FL +++ I + IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID--- 131
ERF +L P YYR + A++VYD+T SF K ++WVKEL + DI + + GNKID
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E+ EK A+ G + F TSAK + ++FL + +++ K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 4e-64
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 2/180 (1%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
+ S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNK 129
TAGQ+ + Y NG +LVY +T SFE +K +L M+G I + + GNK
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKAS 189
DL +R + E+ + A+S A +SAK N+ ++F + + K+S
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 4e-63
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 9/188 (4%)
Query: 4 NSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEKHITTLQASFLNKKLNIAG 61
+ ++T KV ++GE VGK++++ + KF + + T + + I
Sbjct: 9 EVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68
Query: 62 KRLNLAIW--DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119
+++ ++ DTAG + + Y+ A+LV+D++ +SFE K W + LK +
Sbjct: 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128
Query: 120 ---DICLTIAGNKIDLEKQR-TVMQEDAEKYAQSVGAVHFHTSAK-MNRGIEEMFLELSQ 174
+ + NK DL QR V + A+ +A + F SA + + FL ++
Sbjct: 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
Query: 175 RMLEKAQE 182
++
Sbjct: 189 TFYRNYED 196
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 6e-63
Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
FK++++G+ VGKT + R+ +F ++ T+ F + ++I G+R+ + +WDTAG
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 74 QERFH-ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKID 131
QERF ++ YYR + V VYD+T+ SF + W++E K+ +L NDI + GNK D
Sbjct: 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAK---MNRGIEEMFLELSQRMLE 178
L V + A+K+A + F TSAK N +E +F+ L+ ++
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 1e-62
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI----------AGKR 63
Y K + LG+ VGKTSV+ +Y + KFN K ITT+ F K++ G+R
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DIC 122
++L +WDTAG ERF +L ++R + G +L++D+T+E SF V+NW+ +L+ + +
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ + GNK DLE QR V +E+A + A+ G +F TSA I L ++++ +
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-62
Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 17/221 (7%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA + + +S KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ + + I DTAGQE + A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+ + GNK DLE +R V E+A+ A+ + TSAK ++++F +L R +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM-REIRAR 178
Query: 181 QEFDLAKASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
+ D + + +R S + + CC+
Sbjct: 179 KMEDSKEKNGKKKRKS--------------LAKRIRERCCI 205
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-62
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 22/203 (10%)
Query: 2 MANSLDRNSSST-----------YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA 50
M +S + S+ Y K++ LG+ VGKT+ + RY ++KFN K ITT+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
Query: 51 SFLNKKLNIAGK----------RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDE 100
F K++ + +++L +WDTAGQERF +L ++R + G +L++D+T +
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ 120
Query: 101 DSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159
SF V+NW+ +L+ + + + GNK DL QR V + A + A G +F TSA
Sbjct: 121 QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180
Query: 160 KMNRGIEEMFLELSQRMLEKAQE 182
+ +E+ L ++++ ++
Sbjct: 181 ATGQNVEKAVETLLDLIMKRMEQ 203
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 3e-61
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 40/206 (19%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-------- 62
S+K VLLGE VGK+S+VLR +D F+E TT+ ASF +N+
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 63 -----------------------------RLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93
+ IWDTAGQER+ ++ P+YYR + A++
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153
V+DI++ ++ ++ K WV +LK ++ + + NKID K V + +KYAQ +
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLL 179
Query: 154 HFHTSAKMNRGIEEMFLELSQRMLEK 179
TSAK I+ +F L++ + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKN 205
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 1e-60
Identities = 51/182 (28%), Positives = 103/182 (56%), Gaps = 2/182 (1%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
++ + +S KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 63
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ + + I DTAGQE + A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++
Sbjct: 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+ + GNK DLE +R V E+A+ A+ + TSAK ++++F +L + + +
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183
Query: 181 QE 182
E
Sbjct: 184 ME 185
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 1e-60
Identities = 52/177 (29%), Positives = 96/177 (54%), Gaps = 2/177 (1%)
Query: 4 NSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR 63
N + KVV+LG CVGKTS+ ++VE +F+E + T++ ++ +K + +
Sbjct: 13 NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDE 71
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-IC 122
+L + DTAGQ+ + L + +G VLVY +T SF+ +++ ++L + G +
Sbjct: 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ + GNK DL +R V + +K A+S GA +SA+ N+ + +F ++ Q +
Sbjct: 132 VVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 186 bits (476), Expect = 2e-60
Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ + + K+V++G G VGK+++ +++++ F + T++ S+ K ++ G L I
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDI 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAG 127
DTAGQE F A+ Y R +G +LV+ I D SF +V ++ ++ D + + G
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
NK DLE QR V + +A + S +F SAK+ ++E F +L + + + ++
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 8e-59
Identities = 49/165 (29%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G G VGK+++ L+++ D+F E + T S+ KK+ + G+ + + I DTAGQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ ++ + + GNK DLE
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E+A+ A + TSAK ++++F +L + + +
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-58
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+ ++V + G G VGK+S+VLR+V+ F E +I T++ ++ + ++ L I DT
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTT 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKI 130
G +F A+ + + +LVY IT S E++K +++ ++ G+ I + + GNK
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
D R V +AE A++ TSAK+N ++E+F EL +
Sbjct: 120 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-58
Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KVV+LG G VGK+++ +++V F EK+ T++ + K++ + L I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F ++ +Y + G +LVY + ++ SF+ +K ++ ++ + + + + GNK+DLE
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
+R V + A+ G TSAK ++E+F E+ R + A
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV-RQMNYA 167
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-58
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
MA S S + ++K+V++G+G VGK+++ +++ + F + + T++ S+ K I
Sbjct: 6 MATS-AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDN 63
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ L + DTAGQE F A+ Y R +G ++VY +TD+ SFE V + + + ++ +
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLELSQRMLEK 179
+ + NK+DL R V ++ ++ A + TSAK +++ F +L + + ++
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-57
Identities = 52/164 (31%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ ++ +++ F ++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D + + + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
RTV A+ A+S G + TSAK +G+E+ F L + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 4e-57
Identities = 49/182 (26%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + ++ +++K++ ++ + + + GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELSRR 194
RTV + A+ A+S G TSAK +G+++ F L + + + ++ + +
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182
Query: 195 GS 196
+
Sbjct: 183 KT 184
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 4e-57
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKV+L+GE VGK+++ + + + H +++ + + + L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 76 RFHALGP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLE 133
+ + ++V+ +TD SF KV + L+ + + + + GNK DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ R V E+ A ++ H TSA ++ E+F +++ +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-57
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 20/214 (9%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ ++VV+ G G VGK+S+VLR+V+ F + +I T++ ++ + ++ L I
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQIT 61
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAG 127
DT G +F A+ + + +LV+ +T + S E++ K + ++ G+ DI + + G
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187
NK D QR V +A+ AQ TSAKMN ++E+F EL + +++
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR----NMSL 176
Query: 188 ASELSRRGSMRRNVVVVEDEDLPTSSSTKSGCCL 221
+ R G +R + K C L
Sbjct: 177 NIDGKRSGKQKR------------TDRVKGKCTL 198
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-57
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRL 64
+L FKV+L+GE VGK+++ + + + H +++ + + +
Sbjct: 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72
Query: 65 NLAIWDTAGQERFHALGP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-IC 122
L ++D Q + + ++V+ +TD SF KV + L+ + +
Sbjct: 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ + GNK DL + R V E+ A ++ H TSA ++ E+F +++ +
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-56
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG 61
N ++ + + K+ + G VGK+++V+R++ +F ++ TL++++ + I
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDD 73
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
+ +++ I DTAGQE + R G VLVYDITD SFE+V L ++
Sbjct: 74 EVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132
Query: 121 ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG-IEEMFLELSQRMLEK 179
+ L + GNK DL+ R V E+ EK A + + SA G I E+F EL + + +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 2e-56
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
+ +K+V++G G VGK+++ ++ +++ F +++ T++ S+ K++ I G+ L
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLL 71
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTI 125
I DTAGQE + A+ Y R G + V+ I + SF + + +++K++ +D + + +
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
GNK DL RTV + A + A+S G TSAK +G+E+ F L + + + +
Sbjct: 132 VGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 174 bits (445), Expect = 4e-56
Identities = 49/163 (30%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ S+ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ +++ ++ + + + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRM 176
+R V +E + A+ F +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-54
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++VVLLG+ VGKTS+ + + + H + + + L + G+ L + DT E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY-ERTLTVDGEDTTLVVVDTWEAE 63
Query: 76 RFH--ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDL 132
+ + + V+VY I D SFE +L++ D + + + GNK DL
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ R V E+ A TSA + + E+F + +++ + ++
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 3e-54
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KV+LLG VGK+++ + + ++ ++ + + G+ +L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQD 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEK 134
L M + V+VY +TD+ SFEK +L++ D + + + GNK DL +
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V ++ A TSA ++ ++ +F + +++ +
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-53
Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV ++G GK+++V RY+ + ++ F K++ + G+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNKIDL-- 132
+ + V V+ + DE SF+ V N+ L + + + G + +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQE 182
R + A K + + ++ T A +E +F +++Q+++ ++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-53
Identities = 31/178 (17%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEK--HITTLQASFLNKKLNIAGKRLN---LAIWD 70
K++++G GKT+++ + ++ K ++ T+ + + I KR L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDS-FEKVKNWVKELKKMLGNDICLTIAGNK 129
AG+E F++ P + + VYD++ + + +K W+ +K + + + G
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA-RASSSPVILVGTH 121
Query: 130 IDLEKQR---TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+D+ ++ M + ++ G HF + + + + ++ + L
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 6e-53
Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 12/185 (6%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL----- 57
A S KV L+G+G GKTS++ + + + F+ K T + + K+
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88
Query: 58 ---NIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK 114
+ K WD GQE HA + S+ +L+ D + W++ ++
Sbjct: 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145
Query: 115 KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
K G + + NKID + Q+ + ++ S K G+E + L
Sbjct: 146 KYGGKSPVI-VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204
Query: 175 RMLEK 179
+L
Sbjct: 205 AVLHP 209
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-52
Identities = 31/174 (17%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ +LG GK+++ ++++ +F ++ L+ ++ + + + + ++L +
Sbjct: 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVM 74
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL---KKMLGNDICLTIA 126
DTA + Y ++ ++VY + SF+ ++++ L K I +
Sbjct: 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL 133
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLELSQRMLEK 179
GNK+D+ + R V + + A G + F SA ++ ++ +F E + +
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-52
Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 13/182 (7%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S ++ +LG+ GK+S++ R++ + + T + K++ + G+ + I
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIR 59
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-----ICLT 124
+ AG + ++ + V+ + DE+SF+ V +L + G + L
Sbjct: 60 EEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 114
Query: 125 IAGNKIDLEKQRTVMQEDAEKY-AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEF 183
++I R V A A ++ T A ++ +F E++Q+++ ++
Sbjct: 115 GTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
Query: 184 DL 185
L
Sbjct: 175 QL 176
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 3e-50
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 9/188 (4%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRY--VEDKFNEKHITTLQASFLNKKLN 58
M +S+ + S ++VVL+GE VGK+++ + V D + + L
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLM 81
Query: 59 IAGKRLNLA---IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKK 115
+ G+ + +W+ G+ + L ++ + ++VY ITD SFEK +L++
Sbjct: 82 VDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR 139
Query: 116 MLGND-ICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+ I + + GNK DL + R V + A TSA + ++E+F + +
Sbjct: 140 ARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199
Query: 175 RMLEKAQE 182
++ +
Sbjct: 200 QVRLRRDS 207
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-45
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Query: 2 MANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN--KKLNI 59
M + + + K+V++G+G VGKT ++L + + + ++ T+ F N +
Sbjct: 10 MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKY 66
Query: 60 AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLG 118
+ L +WDTAGQE + L P+ Y S+ +L + + + SF+ + W E+K +
Sbjct: 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 119 NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQR 175
+ G K+DL + V +++ + Q +G V + S+ G+ E+F +
Sbjct: 127 T-AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185
Query: 176 MLEK 179
+
Sbjct: 186 IFSN 189
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-45
Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 11/189 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRY--VEDKFNEKHITTLQASFLNKKLNIAGKRLNLA---IWD 70
++VVL+GE VGK+++ + V D + + L + G+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG-EDTYERTLMVDGESATIILLDMWE 65
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND-ICLTIAGNK 129
G+ + L ++ + ++VY ITD SFEK +L++ + I + + GNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK--AQEFDLAK 187
DL + R V + A TSA + ++E+F + +++ + ++E + +
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183
Query: 188 ASELSRRGS 196
+ R+ S
Sbjct: 184 LAYQKRKES 192
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-41
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN--KKLNIAGKRLNLAI 68
S++ K V +G+G VGKT +++ Y + F ++ T+ F N + + G +NL +
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGATVNLGL 60
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
WDTAGQE ++ L P+ YR ++ +L + + + S+E V W+ ELK + + + G
Sbjct: 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVG 119
Query: 128 NKIDL----------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
K+DL + E+ + +GA + S+K ++ +F
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 7e-41
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ S + K V +G+G VGKT +++ Y +KF +I T+ +F + + + G+ +NL +
Sbjct: 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGL 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGND-ICLTIA 126
WDTAGQE + L P+ YR ++ VL + + + S+E V W+ EL++ N I L
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL--V 119
Query: 127 GNKIDL--------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRML 177
G K+DL + + E+ + +GA + S+K + ++ +F + +L
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 178 EKAQEFDLAKASELSRRGS 196
+ + ++ + + RR
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-40
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNL 66
+ S KVVL+G+G GKTS+++ + + F E + T+ + L + GK ++L
Sbjct: 26 EEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHL 84
Query: 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTI 125
IWDTAGQ+ + L P++Y ++ +L +D+T +SF+ + N W E+ + + +
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-VPIIV 143
Query: 126 AGNKIDLE------------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLEL 172
G K DL V ++ A+SVGAV + SA+++ + +F E
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Query: 173 SQRMLEKAQE 182
++ L
Sbjct: 204 AEVALSSRGR 213
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-39
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
S K+V++G+G GKT +++ + +D+F E ++ T+ ++ + + GK++ LA+
Sbjct: 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELAL 77
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
WDTAGQE + L P+ Y ++ ++ + + DS E + WV E+K N + + +
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVA 136
Query: 128 NKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
NK DL KQ V +D A + A + SAK G+ E+F
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-38
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK 62
+ ++ + K V++G+G VGKT +++ Y + F ++I T+ ++ + + + GK
Sbjct: 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK 76
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDI 121
+NL +WDTAGQE + L P+ Y ++ ++ + + SFE V+ W E++ N
Sbjct: 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136
Query: 122 CLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEM 168
+ + G K+DL +K + A+ +GAV + SA RG++ +
Sbjct: 137 II-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195
Query: 169 FLE 171
F E
Sbjct: 196 FDE 198
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-38
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
+ K+V++G+G GKT +++ + +D+F E ++ T+ ++ + + GK++ LA+WDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDT 80
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKI 130
AGQE + L P+ Y ++ ++ + I DS E + W E+K N + + + GNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKK 139
Query: 131 DL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
DL KQ V E+ A + A + SAK G+ E+F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-37
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ K V++G+G VGKT +++ Y D F E+++ T+ + + + GK+ L +
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGL 70
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAG 127
+DTAGQE + L P+ Y M++ ++ + + + SF+ VK WV ELK+ N L + G
Sbjct: 71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL-LIG 129
Query: 128 NKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
+IDL K++ + E +K A+ +GA + SA +G++ +F E
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-37
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA 67
+ K VL+G+G VGKTS+V+ Y + + ++I T +F + +++ G+ + L
Sbjct: 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQ 71
Query: 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGND-ICLTI 125
+ DTAGQ+ F L P+ Y ++ +L + + SF+ V WV E++ I L
Sbjct: 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL-- 129
Query: 126 AGNKIDLE------------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
G + DL K++ V +E A+ A+ + A + SA + ++E+F
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 8e-37
Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ K+V++G+ GKT+++ + +D F E ++ T+ ++ I +R+ L++W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGN 128
DT+G + + P+ Y S+ ++ +DI+ ++ + V W E+++ N + + G
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGC 119
Query: 129 KIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RGIEEMF 169
K DL +Q V + A+ +GA + SA + + ++F
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-35
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
++ + + K+V++G+ GKT+++ + +D F E ++ T+ ++ I
Sbjct: 14 LVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID 72
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGN 119
+R+ L++WDT+G + + P+ Y S+ ++ +DI+ ++ + V W E+++ N
Sbjct: 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN 132
Query: 120 -DICLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RG 164
+ L G K DL +Q V + A+ +GA + SA +
Sbjct: 133 TKMLL--VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 165 IEEMF 169
+ ++F
Sbjct: 191 VRDIF 195
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-35
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S + K V++G+G VGKT +++ Y + F ++I T+ ++ + + + GK +NL +WDT
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDT 60
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKI 130
AGQE + L P+ Y ++ +++ + + SFE V+ W E++ N + + G K+
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKL 119
Query: 131 DL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLE 171
DL +K + A+ +GAV + SA RG++ +F E
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-34
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
K+VL+G+ GKT+++ +D + E ++ T+ ++ L +R+ L++WD
Sbjct: 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWD 81
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNK 129
T+G + + P+ Y S+ +L +DI+ ++ + K W E+ + + + G K
Sbjct: 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCK 140
Query: 130 IDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RGIEEMFLELSQR 175
DL +KQ + E A+ +GA + SA + + I +F S
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
Query: 176 MLEKAQ 181
L K
Sbjct: 201 CLNKPS 206
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 4e-24
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ + + + ++ K V++G+G VGKT +++ Y + F ++I T+ ++ + + +
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD 199
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKN-WVKELKKMLGN 119
GK +NL +WDTAG E + L P+ Y ++ ++ + + SF V+ W E++ N
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN 259
Query: 120 DICLTIAGNKIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIE 166
+ + G K+DL +K + A+ +GAV + SA RG++
Sbjct: 260 TPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318
Query: 167 EMFLE 171
+F E
Sbjct: 319 TVFDE 323
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-21
Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-----------NEKHITTLQASFLNKKL-NIAGK 62
+FK+V G G GKT+ L+++ K + TL FL + + G
Sbjct: 14 NFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--- 119
+ ++ GQ ++A + R +G V V D ++ + +++ L
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGL 131
Query: 120 ---DICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVH-FHTSAKMNRGIEEMFLELSQR 175
D+ + I NK DL V E G A +G+ E E+S+
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPV--EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189
Query: 176 MLEK 179
+L +
Sbjct: 190 VLAR 193
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 7e-20
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 34 RYVEDKFNEKHITTLQASF----LNKKLNIAGKRLNLAIWDTAGQERF--HALGPIYYRM 87
+++D+ + H +T + KL A K L D G E+ P +
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEK-LMYFCTDQLGLEQDFEQKQMPDGKLL 162
Query: 88 SNGAVLVYDITDED--SFEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQRTVMQEDAE 144
+G +L D++ +F+ +V L L + + K D +R +
Sbjct: 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF 222
Query: 145 KYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
++ TSA+ N ++ F L ++++K
Sbjct: 223 ALSKK-NLQVVETSARSNVNVDLAFSTLV-QLIDK 255
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 9e-16
Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 17/183 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQA-SFLNKKLNIAGKRLNLAIWDTAGQE 75
K++L+G GK+S + + ++ L A + + L +WD GQ+
Sbjct: 5 KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 76 RF-----HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGN 128
F ++M + V+D+ + + ++ + K LK++ D + + +
Sbjct: 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 129 KIDL--EKQRTVMQEDAEKYAQS------VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
K+DL +R + + K + ++ + + + + ++ ++
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNM 183
Query: 181 QEF 183
Sbjct: 184 SNH 186
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 2e-15
Identities = 35/191 (18%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASF-LNKKLNIAG 61
++ + +++L+G GK+S + + V K + L+++ + K
Sbjct: 8 SSGRENLYFQGSKPRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNS 66
Query: 62 KRLNLAIWDTAGQERFHALGP---IYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKM 116
+N IWD GQ F + +R + + V D D+ ++ ++ V + K+
Sbjct: 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126
Query: 117 LGNDICLTIAGNKIDL-------EKQRTVMQ---EDAEKYAQSVGAVHFHTSAKMNRGIE 166
D+ + +K+D E QR + Q +D + F+ ++ + I
Sbjct: 127 N-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIF 185
Query: 167 EMFLELSQRML 177
E F ++ Q+++
Sbjct: 186 EAFSKVVQKLI 196
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + E T F + L+ K L L +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRL---QIGEVVTTKPTIGFNVETLSY--KNLKLNVWDLGGQT 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
YY + + V D TD+D EL ML + L + NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK---ELHLMLQEEELQDAALLVFANKQD 130
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
+ E +++ + + +SA GI E L + E+
Sbjct: 131 QPGALSA-SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 9e-12
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++++G GKT+++ + K E T F + + K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNICFTVWDVGGQD 84
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ L Y++ + G + V D D + ++ + EL+KML D L + NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD---ELQKMLQEDELRDAVLLVFANKQD 141
Query: 132 LEKQRTVMQEDAEKYA----QSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ V E +K +S T A G+ + LS + ++
Sbjct: 142 MPNAMPV-SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-11
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+V++LG GKTS++ R + T+ + L K ++ +WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV--GVNLETLQY--KNISFEVWDLGGQT 77
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
Y+ ++ + V D TD D K+ EL +L D L I NK D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLLIFANKQD 134
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKA 180
L + E AE+ S+ + +S+K G+ E L +R+ E+
Sbjct: 135 LPDAASE-AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + K E +TT+ N + + K ++ +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKL---KLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
L Y++ + G + V D D + + + EL +ML D L + NK DL
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 133 EKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
E +K S+ +++ T A G+ E LS ++ +
Sbjct: 114 PNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++ L+G GKT+ V +FNE I T+ F +K+ + + +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITK--GNVTIKLWDIGGQP 78
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
RF ++ Y R + V + D D++ E KN EL +L I + + GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
L +E EK ++ S K I+ L Q +
Sbjct: 136 LPGALDE-KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G GKT+++ ++ NE T+ +++ I +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQF---SMNEVVHTSPTIGSNVEEIVI--NNTRFLMWDIGGQE 71
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ YY + ++V D TD + + EL KML ++ L I NK D
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---ELYKMLAHEDLRKAGLLIFANKQD 128
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQ 181
+++ TV E ++ S+ +H A G+ + + R+ + +
Sbjct: 129 VKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-11
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V LG GKT+++ +D+ + H+ TL +++L IAG +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELTIAGMTFT--TFDLGGHIQ 81
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKIDL 132
+ Y NG V + D D + + K +EL ++ ++ + + I GNKID
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILGNKIDR 138
Query: 133 EKQRTVMQ--EDAEKYAQSVGAVH-------------FHTSAKMNRGIEEMFLELSQRM 176
+ + + E Y Q+ G F S +G E F ++Q +
Sbjct: 139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 9e-11
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + I T+ F + + K L +WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTY--KNLKFQVWDLGGLT 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
YY ++ + V D D D K+ EL ML + L + NK D
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILVVFANKQD 119
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEK 179
+E+ T E A ++ + TSA G++E L + + +
Sbjct: 120 MEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-10
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 22/176 (12%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
K++ LG GKT+++ D+ T +++L I + +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTW--HPTSEELAI--GNIKFTTFDLGGH 77
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKI 130
+ L Y+ NG V + D D + F++ + EL + + I GNKI
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVILGNKI 134
Query: 131 DL------EKQRTVMQEDAEKYAQSVGAVH----FHTSAKMNRGIEEMFLELSQRM 176
D + R+ + +Q + F S M G E F LSQ +
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-10
Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ ++ + T N K + + L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF---NGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQK 73
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ Y+ ++G + V D D + + EL+ +L + L I NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAGATLLIFANKQD 130
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQEFD 184
L + E S+ + H+ SA + L + + D
Sbjct: 131 LPGALSC-NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+++LLG GKT+++ + + T F K + + L +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQL---ASEDISHITPTQGFNIKSVQS--QGFKLNVWDIGGQR 71
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND----ICLTIAGNKID 131
+ Y+ ++ + V D D FE+ EL ++L + + + I NK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQD 128
Query: 132 LEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELSQRMLEKAQ 181
L E AE ++ + SA G+++ + + + K +
Sbjct: 129 LLTAAPA-SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 181
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-10
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 28/192 (14%)
Query: 2 MANSLDRNSSSTYSF-------KVVLLGEGCVGKTSVVLRYVEDKFNE--KHITTLQASF 52
M +S + S+ KV+++G GKT+++ ++ NE T+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQF---SMNEVVHTSPTI--GS 55
Query: 53 LNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE 112
+++ I +WD GQE + YY + ++V D TD + + E
Sbjct: 56 NVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE---E 110
Query: 113 LKKMLGND----ICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRG 164
L KML ++ L I NK D+++ TV E ++ S+ +H A G
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEG 169
Query: 165 IEEMFLELSQRM 176
+ + + R+
Sbjct: 170 LCQGLEWMMSRL 181
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-10
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 26/193 (13%)
Query: 2 MANSLDRNSSSTYSFK-------VVLLGEGCVGKTSVVLRY-VEDKFNEKHITTLQASFL 53
M +S + S+ V+ LG GKT+++ + + ++ + T+ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI--GFS 58
Query: 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113
+K L+ ++D +GQ R+ L YY+ + V D +D K EL
Sbjct: 59 IEKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKE---EL 113
Query: 114 KKML------GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNR 163
+L I + NK+DL T + ++ +++ +H + A
Sbjct: 114 DTLLNHPDIKHRRIPILFFANKMDLRDAVTS-VKVSQLLCLENIKDKPWHICASDAIKGE 172
Query: 164 GIEEMFLELSQRM 176
G++E L ++
Sbjct: 173 GLQEGVDWLQDQI 185
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-09
Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 18/181 (9%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77
V+L+G GK+S + + V L+++ + + ++LA+ + GQ +
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59
Query: 78 HALGPI---YYRMSNGAVLVYDITD--EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
++ V V D D ++ + ++ K+ I + + +K+D
Sbjct: 60 FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDG 118
Query: 133 -------EKQRTVMQ---EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ QR +MQ E+ + V F+ ++ + I E F + Q+++ +
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSF 178
Query: 183 F 183
Sbjct: 179 L 179
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+Y +++ G GKTS++ D + + + + G + L
Sbjct: 43 GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP---LSAADYDGSGVTL--V 96
Query: 70 DTAGQERFHALGPIYYRMSNGAV--LVYDI---TDEDSFEKVKNWVKELKKMLGND---- 120
D G + Y + V L++ + D + L +L
Sbjct: 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDILSITESSC 153
Query: 121 ---ICLTIAGNKIDL 132
I + IA NK +L
Sbjct: 154 ENGIDILIACNKSEL 168
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+Y +++ G GKTS++ D + + + + G + L
Sbjct: 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP---LSAADYDGSGVTL--V 60
Query: 70 DTAGQERFHALGPIYYRMSNGAV--LVYDI---TDEDSFEKVKNWVKELKKMLGND---- 120
D G + Y + V L++ + D + L +L
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDILSITESSC 117
Query: 121 ---ICLTIAGNKIDL 132
I + IA NK +L
Sbjct: 118 ENGIDILIACNKSEL 132
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 7e-07
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND- 120
K ++ +WD GQ++ L Y++ + G + V D D + + + EL +ML D
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDE 263
Query: 121 ---ICLTIAGNKIDLEKQRTVMQEDAEKYA-QSVGAVHFH---TSAKMNRGIEEMFLELS 173
L + NK DL E +K S+ +++ T A G+ E LS
Sbjct: 264 LRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322
Query: 174 QRMLEK 179
++ +
Sbjct: 323 NQLRNQ 328
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
+ + V+ +G GKT + +R + ++ + T++ S K+N + +L +
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVN-NNRGNSLTLI 59
Query: 70 DTAGQERF-HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND------IC 122
D G E L + + V V D K + L ++L +
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV--AEFLYQVLIDSMALKNSPS 117
Query: 123 LTIAGNKIDL 132
L IA NK D+
Sbjct: 118 LLIACNKQDI 127
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+ + D T D+ + + W E L + +T+ NK D+ + M E G
Sbjct: 88 LFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRNKADITGETLGMSEVN-------G 139
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
SA+ G++ L + +
Sbjct: 140 HALIRLSARTGEGVD----VLRNHLKQSM 164
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 70 DTAGQERFHALGPIYYRMSNGA-------VLVYDITDEDSFEKVKNWVKELKKMLGNDIC 122
DT G + LG + + +LV D + V N KE++
Sbjct: 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEI----PFV 144
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ + NKID+ ++ +E Y A SA +G +++ +S+ + +
Sbjct: 145 VVV--NKIDVLGEKA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEI 200
Query: 183 FDLAKASELSRRGSMRRNVVVVEDED 208
L +L G + VV ++
Sbjct: 201 PYL---GDLIDGGDLVILVVPIDLGA 223
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151
+ + D+ E +++ +ELK LT+A NK+D + G
Sbjct: 317 LYLLDLGTERLDDELTEI-RELKAAHPAAKFLTVA-NKLDRAANADALIRAIADGT---G 371
Query: 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASEL 191
SA GI+ L Q M + + D + +
Sbjct: 372 TEVIGISALNGDGID----TLKQHMGDLVKNLDKLHEASV 407
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 100.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 100.0 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 100.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 100.0 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 100.0 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 100.0 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 100.0 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 100.0 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 100.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 100.0 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.98 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.98 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.98 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.98 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.98 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.98 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.98 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.98 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.98 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.97 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.97 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.97 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.96 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.96 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.96 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.96 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.96 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.96 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.96 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.96 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.96 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.96 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.96 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.95 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.95 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.95 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.94 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.94 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.94 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.94 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.93 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.93 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.93 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.92 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.91 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.9 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.9 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.89 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.88 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.87 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.87 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.87 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.87 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.87 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.87 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.87 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.86 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.86 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.86 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.86 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.86 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.86 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.86 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.86 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.85 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.85 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.85 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.85 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.84 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.84 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.84 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.84 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.84 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.83 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.83 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.83 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.83 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.83 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.83 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.83 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.82 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.82 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.82 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.82 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.81 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.81 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.79 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.79 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.78 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.78 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.77 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.77 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.75 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.75 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.75 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.75 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.74 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.74 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.74 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.73 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.73 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.72 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.72 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.72 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.72 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.69 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.66 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.65 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.64 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.62 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.6 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.59 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.59 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.56 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.53 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.52 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.52 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.51 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.48 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.47 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.45 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.42 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.41 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.33 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.3 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.3 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.19 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.07 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.87 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.85 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.79 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.73 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.73 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.73 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.67 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.65 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.49 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.39 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.23 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.19 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.13 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.07 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.0 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.84 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.83 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.81 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.79 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.79 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.71 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.24 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.21 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.08 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.07 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.04 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.02 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.0 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.0 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.99 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.98 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.98 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.96 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 96.96 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.95 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.95 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.92 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.88 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.88 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.86 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.8 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.78 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.78 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.77 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.77 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.77 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.76 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.76 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.74 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.73 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.73 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.73 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.72 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.72 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.71 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.71 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.7 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.69 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.69 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.68 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.68 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.67 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.67 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.66 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.65 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.65 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.65 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.64 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.63 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.62 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.62 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.62 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.62 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.62 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.61 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.59 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.59 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.59 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.58 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.58 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.57 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.57 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.57 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.56 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.55 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.55 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.55 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.54 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.54 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.54 | |
| 3uc9_A | 233 | Increased recombination centers protein 6; rossman | 96.53 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.52 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.51 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.51 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.5 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.5 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.5 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.49 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.48 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.47 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.46 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.45 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.44 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.44 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.44 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.44 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.44 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.41 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.4 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.4 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.4 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.39 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.38 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.38 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.38 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.33 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.33 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.32 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.32 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.31 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.29 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.29 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.29 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.29 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.28 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.27 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.27 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.27 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.27 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.26 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.26 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.24 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.24 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.23 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.22 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.22 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.2 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.19 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.19 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.18 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.18 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.18 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.17 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.17 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.15 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.15 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.14 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.14 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.13 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.12 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.12 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.12 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.11 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.11 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.11 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.1 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.1 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.07 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.06 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.05 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.05 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.04 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.02 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.98 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.97 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.97 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.96 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.96 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.96 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 95.95 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.94 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.94 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.93 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 95.93 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.92 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.91 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.88 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.88 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.83 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 95.8 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.79 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.79 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.77 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.77 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.76 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.76 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.74 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 95.73 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.72 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.72 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.69 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.68 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.67 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.65 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 95.64 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.64 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.62 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.57 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.54 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.54 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.49 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.49 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.47 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.46 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.44 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 95.44 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.43 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.4 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.39 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.37 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.36 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.32 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.32 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.32 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.23 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.23 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.23 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.19 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.18 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.13 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.1 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.1 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.04 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.01 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.99 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.97 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.96 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 94.96 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 94.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.96 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 94.93 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.93 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.91 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.9 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.89 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.88 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.87 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.86 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 94.84 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.76 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.75 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.73 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.72 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 94.71 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.71 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.64 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.63 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.63 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.62 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.62 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.6 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.6 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.58 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.53 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.46 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.45 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.42 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.41 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.41 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.41 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 94.41 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.4 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 94.4 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.36 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.35 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 94.33 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.33 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 94.33 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 94.31 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.3 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.29 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 94.29 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 94.28 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.27 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.26 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.25 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.25 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=271.95 Aligned_cols=171 Identities=35% Similarity=0.638 Sum_probs=147.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.++.+++||+|+|++|||||||+++|..+.|...+.+|++.++..+.+..++..+.+.||||+|+++|..++..++++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++++|||++++.+|+.+..|+..+.....+++|++||+||+|+.+.+++..+++++++..++++|+++||++|.||+++|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
+.|++.+....
T Consensus 168 ~~i~~~i~~~~ 178 (216)
T 4dkx_A 168 RRVAAALPGME 178 (216)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhh
Confidence 99999886543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=228.49 Aligned_cols=176 Identities=35% Similarity=0.654 Sum_probs=161.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35778999999999999999999999998888888999999888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8722 171 ELSQRMLEKAQEFDLA 186 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~ 186 (223)
+|.+.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998776555433
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=230.70 Aligned_cols=177 Identities=33% Similarity=0.630 Sum_probs=148.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34778999999999999999999999988888888899988888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8722 171 ELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~ 187 (223)
+|++.+.+.....+...
T Consensus 169 ~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 169 ELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHTTCC-------
T ss_pred HHHHHHHHHhhhcccCc
Confidence 99999987766655443
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=223.60 Aligned_cols=177 Identities=29% Similarity=0.498 Sum_probs=151.6
Q ss_pred cccCCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q psy8722 3 ANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
...-....+..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+.
T Consensus 2 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (206)
T 2bov_A 2 AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRD 80 (206)
T ss_dssp ---------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHH
T ss_pred CcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHH
Confidence 33444445567789999999999999999999998888777777777665 45567788888999999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.+++.+|++++|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||++
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCC
Confidence 999999999999999999999999999999887653 5789999999999988778888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (223)
|.|++++|++|++.+.++.
T Consensus 161 g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 161 RANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc
Confidence 9999999999999998764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=217.65 Aligned_cols=171 Identities=40% Similarity=0.725 Sum_probs=129.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999998888878888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|.+.+.++..+
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876554
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=218.67 Aligned_cols=171 Identities=35% Similarity=0.612 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 46789999999999999999999999888888888999988888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCCCHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 166 (223)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++..+++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998877653 468999999999997 45567788888887 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQEF 183 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~ 183 (223)
++|++|.+.+.+.....
T Consensus 164 ~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 164 QAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998765443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=218.05 Aligned_cols=171 Identities=37% Similarity=0.691 Sum_probs=158.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 35678999999999999999999999988888888999999988888899988999999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|.+.+.++..
T Consensus 182 ~l~~~i~~~~~ 192 (201)
T 2ew1_A 182 DLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999887643
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=215.37 Aligned_cols=173 Identities=34% Similarity=0.681 Sum_probs=159.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34678999999999999999999999999888888999999988889999998999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQEF 183 (223)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (223)
+|.+.+.++....
T Consensus 172 ~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 172 TMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccc
Confidence 9999998876544
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=214.35 Aligned_cols=171 Identities=35% Similarity=0.695 Sum_probs=153.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 35789999999999999999999999988887778888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.++..
T Consensus 177 ~l~~~i~~~~~ 187 (191)
T 2a5j_A 177 NTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=218.44 Aligned_cols=170 Identities=40% Similarity=0.693 Sum_probs=147.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+.++.+||+|+|++|+|||||+++|....+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34577899999999999999999999988888888888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..+++ +++++||+++.|++++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887767899999999999988778888999999999999 9999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 169 FLELSQRMLEK 179 (223)
Q Consensus 169 ~~~i~~~~~~~ 179 (223)
|++|++.+.++
T Consensus 184 ~~~l~~~i~~~ 194 (201)
T 2hup_A 184 FLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=211.67 Aligned_cols=169 Identities=38% Similarity=0.674 Sum_probs=155.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 46789999999999999999999999888888788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
|.+.+.++.
T Consensus 179 l~~~i~~~~ 187 (189)
T 2gf9_A 179 LVDVICEKM 187 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=210.65 Aligned_cols=167 Identities=80% Similarity=1.260 Sum_probs=147.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999888888889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988876667999999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=209.54 Aligned_cols=172 Identities=38% Similarity=0.694 Sum_probs=155.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 35688999999999999999999999988888888999999988888999988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+.... ++.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999988765 4689999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQEF 183 (223)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (223)
+|.+.+.+...+.
T Consensus 164 ~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 164 CITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999998876554
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=212.62 Aligned_cols=172 Identities=33% Similarity=0.643 Sum_probs=158.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46789999999999999999999999888888888989888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988877778999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQEF 183 (223)
Q Consensus 172 i~~~~~~~~~~~ 183 (223)
+.+.+.++....
T Consensus 167 l~~~~~~~~~~~ 178 (186)
T 2bme_A 167 CARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhhhc
Confidence 999998765443
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=210.75 Aligned_cols=168 Identities=33% Similarity=0.679 Sum_probs=154.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35788999999999999999999999888888788888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
+|++.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=208.95 Aligned_cols=171 Identities=34% Similarity=0.652 Sum_probs=146.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
...++.+||+++|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34578999999999999999999999987774 46678888888887778899889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999887788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|.+.+.++.
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=210.61 Aligned_cols=171 Identities=40% Similarity=0.724 Sum_probs=153.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34577899999999999999999999998888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988877789999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+..
T Consensus 167 ~~l~~~~~~~~ 177 (181)
T 2efe_B 167 YEIARRLPRVQ 177 (181)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhcC
Confidence 99998776543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=211.76 Aligned_cols=170 Identities=34% Similarity=0.597 Sum_probs=156.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 35778999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.++.
T Consensus 181 ~l~~~i~~~~ 190 (193)
T 2oil_A 181 TVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=212.19 Aligned_cols=172 Identities=36% Similarity=0.641 Sum_probs=157.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 35678999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQE 182 (223)
Q Consensus 171 ~i~~~~~~~~~~ 182 (223)
+|.+.+.++..+
T Consensus 164 ~l~~~i~~~~~~ 175 (203)
T 1zbd_A 164 RLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876544
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=215.09 Aligned_cols=171 Identities=33% Similarity=0.653 Sum_probs=147.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999998888888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.++..+..|+..+......++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQE 182 (223)
Q Consensus 172 i~~~~~~~~~~ 182 (223)
|.+.+.++...
T Consensus 182 l~~~i~~~~~~ 192 (200)
T 2o52_A 182 CARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999876543
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=213.73 Aligned_cols=175 Identities=46% Similarity=0.713 Sum_probs=153.4
Q ss_pred cCCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q psy8722 5 SLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIY 84 (223)
Q Consensus 5 ~~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (223)
++......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 34444556889999999999999999999999988887788899988888888888888999999999999999999999
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
++.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 99999999999999999999999999999887767899999999999987777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
++++|++|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=206.26 Aligned_cols=165 Identities=42% Similarity=0.792 Sum_probs=151.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35789999999999999999999998888887788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.++..+..|+..+.....+++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877778888999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=204.67 Aligned_cols=165 Identities=46% Similarity=0.761 Sum_probs=152.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 46789999999999999999999999888888888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.++..+..|+..+.....+..|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877778999999999999887788889999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=207.68 Aligned_cols=165 Identities=40% Similarity=0.730 Sum_probs=145.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57999999999999999999999988888888899988888888888888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++..+++..++++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887778999999999999 4456678889999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 174 QRMLEK 179 (223)
Q Consensus 174 ~~~~~~ 179 (223)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=206.66 Aligned_cols=166 Identities=33% Similarity=0.608 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35789999999999999999999999888888888998888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999887765 56899999999999877777889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=217.44 Aligned_cols=171 Identities=36% Similarity=0.643 Sum_probs=157.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34678999999999999999999999888888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999987777899999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999887643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=209.12 Aligned_cols=174 Identities=36% Similarity=0.598 Sum_probs=155.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEE-EEEEEECCe---------EEEEEEEeCCCccccc
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL-NKKLNIAGK---------RLNLAIWDTAGQERFH 78 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~ 78 (223)
..+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+|||||++.+.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 345688999999999999999999999988888888888888877 556666655 7899999999999999
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
..+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 8899999999999999999999999999999999887765 678999999999998777788899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
||+++.|++++|++|.+.+.++...
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=205.61 Aligned_cols=163 Identities=44% Similarity=0.789 Sum_probs=150.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999888888888999988888888889988999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc---ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ---RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|++++.++..+..|+..+......+.|+++|+||+|+... +.+..++..+++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877778999999999999655 67788889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 171 ELSQRM 176 (223)
Q Consensus 171 ~i~~~~ 176 (223)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=207.86 Aligned_cols=166 Identities=27% Similarity=0.472 Sum_probs=151.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 46789999999999999999999998888888888888777 66777889889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC-CCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK-MNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~ 169 (223)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+ ++.|++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence 99999999999999999999887643 4678999999999998888889999999999999999999999 999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 174 ~~l~~~i~~ 182 (183)
T 3kkq_A 174 HDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=212.38 Aligned_cols=168 Identities=38% Similarity=0.721 Sum_probs=147.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999888887788899988888888889988999999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~ 169 (223)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..+ +.+++++||+++.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999998887778999999999999887788888889998875 7899999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 182 ~~l~~~i~~ 190 (192)
T 2il1_A 182 LKLVDDILK 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=209.40 Aligned_cols=169 Identities=30% Similarity=0.458 Sum_probs=151.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35789999999999999999999998888888888888877 66777899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++..++++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999998876643 5789999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+.....
T Consensus 162 ~l~~~~~~~~~ 172 (181)
T 3t5g_A 162 RIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcC
Confidence 99998876543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=207.44 Aligned_cols=168 Identities=36% Similarity=0.657 Sum_probs=153.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
.+.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999888888888999988888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887777899999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
+|.+.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99886643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=205.64 Aligned_cols=169 Identities=30% Similarity=0.499 Sum_probs=151.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3467899999999999999999999988888888888887765 667788888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999888544 44678999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999887654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=209.68 Aligned_cols=167 Identities=18% Similarity=0.336 Sum_probs=143.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+... ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3457789999999999999999999998888888888888776 445677888899999999999988775 56889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC-CCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA-KMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i 165 (223)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++..++++++++|| +++.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 99999999999999999999999887642 57899999999999887888899999999999999999999 899999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
+++|+.|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=208.17 Aligned_cols=167 Identities=30% Similarity=0.514 Sum_probs=148.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-KRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999998888777778888888888888876 67899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..++..+++..++++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999998877532 3344899999999987777888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=212.08 Aligned_cols=170 Identities=22% Similarity=0.335 Sum_probs=145.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-LGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~ 88 (223)
.+..+.+||+|+|++|||||||+++|.+......+.++.+.++....+.+++..+.+.+|||+|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456789999999999999999999975444434456667777777788899999999999999987765 667788999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||+++.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999998887653 4789999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEK 179 (223)
Q Consensus 168 ~~~~i~~~~~~~ 179 (223)
+|++|++.+...
T Consensus 178 lf~~l~~~i~~~ 189 (195)
T 3cbq_A 178 LFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=203.27 Aligned_cols=167 Identities=38% Similarity=0.657 Sum_probs=147.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999888888888999998888888899988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHH-HhCCcEEEecCCCCCCH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 165 (223)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999999887654 678999999999997 55667888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
+++|++|++.+++
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=209.86 Aligned_cols=171 Identities=38% Similarity=0.700 Sum_probs=152.1
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.....+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456789999999999999999999998888888889999888888888999889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++..+++..++++++++||+++.|++++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877778999999999999 45566788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|.+.+.++.
T Consensus 173 ~~~l~~~~~~~~ 184 (213)
T 3cph_A 173 FFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=212.21 Aligned_cols=168 Identities=36% Similarity=0.613 Sum_probs=139.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34678999999999999999999999888877778888888888888889988999999999999999888999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc------ccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE------KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+|+|||++++.++..+..|+..+......++|+++|+||+|+. ..+.+..++..+++...+++++++||+++.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999988776779999999999985 3466778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
++++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-33 Score=207.65 Aligned_cols=172 Identities=24% Similarity=0.518 Sum_probs=148.8
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (223)
.......+.+||+++|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 334455788999999999999999999999888888888888877653 5678888899999999999999999999999
Q ss_pred cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc--cccCCHHHHHHHHHHhCCc-EEEecCCCC
Q psy8722 87 MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK--QRTVMQEDAEKYAQSVGAV-HFHTSAKMN 162 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (223)
++|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.. .+.+..++..+++..+++. ++++||+++
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 99999999999999999997 67988888654 5689999999999965 3677889999999999998 999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (223)
.|++++|++|.+.+.++.
T Consensus 173 ~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp BSHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999887543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=205.79 Aligned_cols=165 Identities=20% Similarity=0.381 Sum_probs=143.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+|+|++|||||||+++|....+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 34577999999999999999999999998888777666 3334 4677889999999999999998775 788999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCc--cccccCCHHHHHHHHHHhC-CcEEEecCCCCCCH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGI 165 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 165 (223)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+ ...+.+..+++.+++..++ ++|+++||+++.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987653 57899999999999 4567788899999999997 89999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKAQ 181 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (223)
+++|++|++.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 168 ERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887643
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=213.53 Aligned_cols=167 Identities=28% Similarity=0.576 Sum_probs=144.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4689999999999999999999998888877778887665 445667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc--------CCHHHHHHHHHHhCC-cEEEecCCCC
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT--------VMQEDAEKYAQSVGA-VHFHTSAKMN 162 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (223)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+...+. +..++..+++..+++ +++++||+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 7999988765 3789999999999865543 367888999999996 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
.|++++|++|++.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHhhhhh
Confidence 9999999999998876543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=203.50 Aligned_cols=165 Identities=23% Similarity=0.352 Sum_probs=135.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccCCEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-LGPIYYRMSNGAVL 93 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 93 (223)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997777666667777788888888999999999999999998876 66777899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887654 478999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=212.36 Aligned_cols=171 Identities=24% Similarity=0.426 Sum_probs=146.5
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
.+..+.+||+|+|++|||||||+++|....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3446789999999999999999999999988888888888776 455667888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEE
Q psy8722 90 GAVLVYDITDEDSFEK-VKNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHF 155 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (223)
++|+|||++++.++.. +..|+..+.... ++.|+++|+||+|+... +.+..+++.+++..+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 688999998875 57999999999999653 67889999999999999 999
Q ss_pred EecCCCCCC-HHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRG-IEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 156 ~~Sa~~~~~-i~~~~~~i~~~~~~~~~~ 182 (223)
++||+++.| ++++|++|++.+..+...
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999998 999999999998766543
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=207.50 Aligned_cols=167 Identities=34% Similarity=0.640 Sum_probs=148.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH-ALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999988888888899988888888899988999999999999887 788889999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC---CCHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN---RGIE 166 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~ 166 (223)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++..++++++++||+++ .|+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999988775 467999999999999887788889999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|++.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=203.05 Aligned_cols=167 Identities=24% Similarity=0.350 Sum_probs=136.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccCCE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--FHALGPIYYRMSNG 90 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 90 (223)
.+.+||+++|++|+|||||+++|.+..+... .++.+.++....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 5689999999999999999999997776544 34566677677778889889999999999887 55666778899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3478999999999998877888888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+..+.
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=202.01 Aligned_cols=164 Identities=18% Similarity=0.374 Sum_probs=141.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|||||||+++|.+..+.. +.+|.+..+ ...+.+++..+.+.+|||+|++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999888876 667777554 56677888889999999999876 45788999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCc--cccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDL--EKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+..... +++|+++|+||+|+ ...+.+..+++.+++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999999998777666543 57899999999999 356677888999998877 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQEF 183 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~~~ 183 (223)
++|++|++.+.......
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998775543
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=210.30 Aligned_cols=170 Identities=29% Similarity=0.444 Sum_probs=145.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 46789999999999999999999999888888788887776 55666677778999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999987653 34689999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQE 182 (223)
Q Consensus 171 ~i~~~~~~~~~~ 182 (223)
+|.+.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999998776544
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=214.08 Aligned_cols=172 Identities=34% Similarity=0.603 Sum_probs=152.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe----------EEEEEEEeCCCccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK----------RLNLAIWDTAGQERFHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~ 80 (223)
+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.||||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3477899999999999999999999988887777788888887777777665 789999999999999888
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 89999999999999999999999999999887765443 57899999999999887788889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++.|++++|++|.+.+.++..+
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999876544
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=204.19 Aligned_cols=170 Identities=37% Similarity=0.625 Sum_probs=136.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
...+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34678999999999999999999999988888888888888888777776 55678999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCcc-ccccCCHHHHHHHHH-HhCCcEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLE-KQRTVMQEDAEKYAQ-SVGAVHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (223)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++..+++. ..+.+++++||+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999998887654 678999999999994 445567888888887 566799999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKA 180 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (223)
|++++|++|.+.+.++.
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999987654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=200.29 Aligned_cols=165 Identities=30% Similarity=0.515 Sum_probs=144.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3579999999999999999999998888777777776665 345677888889999999999999989999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999887654 57999999999999887778889999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=203.80 Aligned_cols=167 Identities=30% Similarity=0.592 Sum_probs=147.3
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
..+..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 90 (194)
T 2atx_A 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 90 (194)
T ss_dssp SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCC
Confidence 34456889999999999999999999998888877788877665 44566788889999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cE
Q psy8722 89 NGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VH 154 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (223)
|++|+|||++++.++..+. .|+..+.... +++|+++|+||+|+... +.+..++..+++..+++ ++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999997 7999888764 36899999999999653 46778899999999998 89
Q ss_pred EEecCCCCCCHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++||+++.|++++|++|++.++
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=205.18 Aligned_cols=170 Identities=26% Similarity=0.472 Sum_probs=140.2
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
....+.+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3457799999999999999999999998878777777776555 456677888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEE
Q psy8722 90 GAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHF 155 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (223)
++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.. .+.+..++...++..++. +++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 69998887653 789999999999965 356778889999999998 899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++||+++.|++++|++|++.+.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999887644
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=202.62 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=149.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 346789999999999999999999998888777777777665 4456678888899999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887654 478999999999998877788899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 170 LELSQRMLEKA 180 (223)
Q Consensus 170 ~~i~~~~~~~~ 180 (223)
++|.+.+.+++
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-32 Score=201.05 Aligned_cols=169 Identities=29% Similarity=0.535 Sum_probs=146.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999988887776666644 44566678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+. .+.+..+...+++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999988754 3578999999999996 4456788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 172 LSQRMLEKAQEF 183 (223)
Q Consensus 172 i~~~~~~~~~~~ 183 (223)
|.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776554
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=205.27 Aligned_cols=168 Identities=39% Similarity=0.710 Sum_probs=152.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45789999999999999999999999888888888999888888888899889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..++..+++...+++++++||+++.|++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999998876542 578999999999994 445678889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.+..
T Consensus 171 ~l~~~~~~~~ 180 (195)
T 1x3s_A 171 ELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHTSG
T ss_pred HHHHHHHhhh
Confidence 9999987654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=205.06 Aligned_cols=168 Identities=31% Similarity=0.491 Sum_probs=147.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 346789999999999999999999998888877778877665 44567788889999999999887 6677888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC-CHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEM 168 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~ 168 (223)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++..++++++++||+++. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 999999999999999999999888764 3579999999999998877888899999999999999999999999 99999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|++|++.+.++.
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=203.80 Aligned_cols=165 Identities=37% Similarity=0.644 Sum_probs=147.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeE-----------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKR----------------------------- 63 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 63 (223)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 568999999999999999999999988888888899888888777777655
Q ss_pred --------EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 --------LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+.+.+|||||++.+...+..+++.+|++|+|+|++++.++..+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8899999999999999999999999999999999999999999999999887653 89999999999 455
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+.+..+++.+++..++++++++||+++.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 677889999999999999999999999999999999999887653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=210.52 Aligned_cols=171 Identities=24% Similarity=0.375 Sum_probs=116.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEECCe--EEEEEEEeCCCccccccccccccccC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIAGK--RLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
.+.+||+|+|++|+|||||+++|.+. .+...+.+|.+.++....+.+++. .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57899999999999999999999987 777777788887887788888876 78999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccc-cccCCHHHHHHHHHHhCCcEEEecCCC-CC
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEK-QRTVMQEDAEKYAQSVGAVHFHTSAKM-NR 163 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 163 (223)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..+++.+++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988766 6799999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~~ 183 (223)
|++++|++|.+.+.+...+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988766544
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=198.54 Aligned_cols=163 Identities=30% Similarity=0.549 Sum_probs=145.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988888777788776653 456677888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++..+ +.+++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887754 357999999999999887788889999999888 789999999999999999999
Q ss_pred HHHHHH
Q psy8722 172 LSQRML 177 (223)
Q Consensus 172 i~~~~~ 177 (223)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=198.75 Aligned_cols=164 Identities=23% Similarity=0.366 Sum_probs=124.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 368999999999999999999986555422 34444444 4566788889999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999999887653 3578999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 173 SQRMLEK 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988765
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=198.22 Aligned_cols=163 Identities=30% Similarity=0.547 Sum_probs=145.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999998888777777766544 5667788888899999999999998888999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.++..+..|+..+..... .+.|+++|+||+|+...+++..++..+++..++++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999988877643 579999999999998777888889999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98774
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=202.62 Aligned_cols=165 Identities=22% Similarity=0.492 Sum_probs=144.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 46789999999999999999999998888877788887766 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (223)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++.+++..++ .+++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67998887764 46899999999999642 5678888999999988 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy8722 158 SAK-MNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 158 Sa~-~~~~i~~~~~~i~~~~~~ 178 (223)
||+ ++.|++++|+.+++.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999988763
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=205.24 Aligned_cols=168 Identities=23% Similarity=0.354 Sum_probs=140.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC--CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK--FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 87 (223)
...+.+||+|+|++|||||||+++|.+.. +... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34667999999999999999999998533 3333 34577777777788899889999999999876 44556778899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988877542 3578999999999998777888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|++.+..+
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=197.50 Aligned_cols=165 Identities=28% Similarity=0.557 Sum_probs=145.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 5789999999999999999999998888877777776655 455678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+... +.+..++..+++..++. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 69988887654 7899999999998653 46678888999999997 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~ 179 (223)
|++|.|++++|++|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=204.20 Aligned_cols=165 Identities=23% Similarity=0.495 Sum_probs=144.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 46789999999999999999999999888887788887776 34566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhC-CcEEEe
Q psy8722 92 VLVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVG-AVHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 157 (223)
|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.. .+.+..+++.+++..++ .+++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 68999887764 4689999999999964 25677888999999988 699999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q psy8722 158 SAK-MNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 158 Sa~-~~~~i~~~~~~i~~~~~~ 178 (223)
||+ ++.|++++|+.|++.++.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998774
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=196.75 Aligned_cols=167 Identities=31% Similarity=0.545 Sum_probs=136.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 45789999999999999999999998887777666666554 45667788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.. +.+..++..+++..++++++++||+++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887654 5789999999999865 55678889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 171 ELSQRMLEKA 180 (223)
Q Consensus 171 ~i~~~~~~~~ 180 (223)
+|.+.+.+.+
T Consensus 176 ~l~~~~~~~~ 185 (190)
T 3con_A 176 TLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=205.00 Aligned_cols=167 Identities=31% Similarity=0.577 Sum_probs=125.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 45789999999999999999999998888777777776554 44567888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q psy8722 92 VLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (223)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+... +.+..++..+++..+++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999997 6998887764 46899999999999654 25677888999999998 99999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
||++|.|++++|++|++.+++..
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-31 Score=198.72 Aligned_cols=163 Identities=29% Similarity=0.588 Sum_probs=144.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||+++|....+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 568999999999999999999999888888878888877653 4677888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 57888887754 46899999999998654 45778889999999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~ 177 (223)
|+++.|++++|++|.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=204.82 Aligned_cols=165 Identities=30% Similarity=0.477 Sum_probs=143.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 356799999999999999999999988887777777765553 4556788888999999999999988888999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999998888777543 3689999999999965 4567788889999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
++|.+.+.+
T Consensus 163 ~~l~~~~~~ 171 (199)
T 2gf0_A 163 QELLTLETR 171 (199)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHHHhh
Confidence 999886643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=195.29 Aligned_cols=162 Identities=31% Similarity=0.497 Sum_probs=142.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 5799999999999999999999988887777777766553 445677888899999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888877643 46899999999999877778888889999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=195.82 Aligned_cols=167 Identities=23% Similarity=0.350 Sum_probs=138.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-FHALGPIYYRMSN 89 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 89 (223)
.+.+||+++|++|||||||+++|.+. .+... .++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999853 33333 34567777777788899989999999999776 4556677889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999998887653 357899999999999777778888888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=201.91 Aligned_cols=169 Identities=26% Similarity=0.530 Sum_probs=139.6
Q ss_pred CCCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q psy8722 6 LDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYY 85 (223)
Q Consensus 6 ~~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (223)
+.+.....+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++
T Consensus 21 m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 99 (204)
T 4gzl_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 99 (204)
T ss_dssp ---------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred HHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHh
Confidence 33444557789999999999999999999998888877777775443 55667788889999999999999999999999
Q ss_pred ccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVGA 152 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~ 152 (223)
+++|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.... .+..++...++..+++
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 9999999999999999999997 7998888765 578999999999986543 3678889999999997
Q ss_pred -cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 153 -VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 153 -~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++++||++|.|++++|++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 599999999999999999998754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-34 Score=215.23 Aligned_cols=167 Identities=35% Similarity=0.714 Sum_probs=143.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999998888888788888888888888999989999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999877777777788899999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 172 LSQRMLE 178 (223)
Q Consensus 172 i~~~~~~ 178 (223)
|.+.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9877643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-32 Score=203.94 Aligned_cols=171 Identities=23% Similarity=0.304 Sum_probs=140.5
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC-----------CccccceeEEEEEE-EECCeEEEEEEEeCCCcc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK-----------HITTLQASFLNKKL-NIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~ 75 (223)
.....++.+||+|+|++|+|||||++.+.+ .+... +.+|.+.++....+ .+++..+.+.+|||||++
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 345568899999999999999999976654 33333 23455556555444 567778899999999999
Q ss_pred ccccccccccccCCEEEEEEECC------CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDIT------DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.+...+..+++++|++|+|||++ +..++..+..|+..+.. ...++|+++|+||+|+... +..+++.+++..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~ 162 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDP 162 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHh
Confidence 99999999999999999999999 56778888888877732 3357899999999998654 678899999999
Q ss_pred hCC-cEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 150 VGA-VHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 150 ~~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++ +++++||+++.|++++|++|.+.+.++..+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999 999999999999999999999999887543
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=197.76 Aligned_cols=165 Identities=29% Similarity=0.577 Sum_probs=139.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...+||+++|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 568999999999999999999999888887777787776644 3677888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKV-KNWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... +.+..++..+++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67988887754 46899999999999654 45677888899999998 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~~ 179 (223)
|+++.|++++|++|.+.++..
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988643
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=205.32 Aligned_cols=171 Identities=26% Similarity=0.485 Sum_probs=147.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+.......+... +..+.+.+|||||++.+...+..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34678999999999999999999999888877777888877766665554 44488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999998887779999999999998777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 170 LELSQRMLEKAQ 181 (223)
Q Consensus 170 ~~i~~~~~~~~~ 181 (223)
++|.+.+.....
T Consensus 167 ~~l~~~~~~~~~ 178 (218)
T 4djt_A 167 LHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHhcccc
Confidence 999998866543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=190.10 Aligned_cols=162 Identities=32% Similarity=0.577 Sum_probs=142.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 368999999999999999999998887777667666544 4556678888999999999999998888889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++..+++..++++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 4789999999999865 4567888999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-32 Score=200.91 Aligned_cols=164 Identities=27% Similarity=0.560 Sum_probs=127.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 356899999999999999999999988887777777765543 2344566678889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc----------CCHHHHHHHHHHhCC-cEEEecC
Q psy8722 92 VLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT----------VMQEDAEKYAQSVGA-VHFHTSA 159 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (223)
++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...+. +..++..+++..++. +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999997 6999888765 3789999999999865543 467888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRML 177 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~ 177 (223)
+++.|++++|++|.+.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=192.00 Aligned_cols=168 Identities=35% Similarity=0.644 Sum_probs=150.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999998888777888888888888889999899999999999999888888899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|+|+.+..++..+..|+..+......+.|+++++||+|+...+.+..+++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999899988876655678999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 173 SQRMLEKA 180 (223)
Q Consensus 173 ~~~~~~~~ 180 (223)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=203.10 Aligned_cols=170 Identities=27% Similarity=0.531 Sum_probs=149.7
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
......+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34456788999999999999999999988777777778888888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
+|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+..... ..+...++...+++++++||+++.|+++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999998875 4689999999999965443 2356678888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEKA 180 (223)
Q Consensus 168 ~~~~i~~~~~~~~ 180 (223)
+|++|.+.+....
T Consensus 165 l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 165 PFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhCc
Confidence 9999999886553
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=194.76 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=129.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC-CCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE-KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
++..+.+||+|+|++|||||||+++|.+..+.. .+.+|.+... ..+...+ +.+.+|||||++.+...+..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 445778999999999999999999999888877 7778877443 3334443 7899999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHcC--------CCCeEEEEEeCCCccccccCCHHHHHHH------HHHhCCcE
Q psy8722 89 NGAVLVYDITDEDSFEKVKNWVKELKKMLG--------NDICLTIAGNKIDLEKQRTVMQEDAEKY------AQSVGAVH 154 (223)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~ 154 (223)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+..... .++..+. +...++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999998888765421 2689999999999965532 2222211 13466789
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
+++||+++.|++++|++|.+.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=185.20 Aligned_cols=166 Identities=35% Similarity=0.654 Sum_probs=150.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999988888888999999888888999988899999999999998888888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|+|..+..+++.+..|+..+......+.|+++++||.|+.+.+....+++..++...++.++++|++++.++.++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998899887766556789999999999987777788889999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 171 ELSQRM 176 (223)
Q Consensus 171 ~i~~~~ 176 (223)
.|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=186.57 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=129.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.+.. ...+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 678999999999999999999999776 55666776644 34455555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999999988877654 23578999999999996543 3344433322 235589999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=191.17 Aligned_cols=157 Identities=24% Similarity=0.321 Sum_probs=123.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.++|+++|++|||||||+++|.+..+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 356789999999999999999999977664 345665554 34556666 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----------------hCCc
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----------------VGAV 153 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 153 (223)
++|+|++++.++..+..|+..+... ...++|+++|+||+|+.. .+..+++.+++.. .+.+
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 9999999999999999998887654 235789999999999965 4567777776653 2357
Q ss_pred EEEecCCCCCCHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
++++||++|.|++++|++|.+.
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=186.16 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=129.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
..+.+||+|+|++|+|||||+++|.+.. +...+.+|.+ +....+.+++ +.+.+|||||++.+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3568999999999999999999999766 5555666665 3445555555 689999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCC
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG---NDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMN 162 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 162 (223)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+... ...++..+.+. ..+++++++||+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999888776533 47899999999999643 34566665553 23568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=186.86 Aligned_cols=159 Identities=20% Similarity=0.291 Sum_probs=126.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|....+.. +.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999777653 45666543 34455554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...+..+. +...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887765532 2578999999999986543 22332222 22345679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-30 Score=187.69 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=121.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+..++ +.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999766653 45666633 33344444 78999999999999888888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 169 (223)
|++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999888877653 23578999999999996542 2233322211 134579999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 170 LELSQRMLEK 179 (223)
Q Consensus 170 ~~i~~~~~~~ 179 (223)
++|.+.+.++
T Consensus 154 ~~l~~~i~~~ 163 (164)
T 1r8s_A 154 DWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999887543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=186.40 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=127.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 366789999999999999999999987765 345666554 44566666 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH------------hCCcEEEec
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS------------VGAVHFHTS 158 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S 158 (223)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+..+++.+.+.. .+++++++|
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 99999999999999999988876542 35789999999999865 4456666665543 345799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQR 175 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~ 175 (223)
|++|.|++++|++|.+.
T Consensus 173 a~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHHhh
Confidence 99999999999998754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=191.09 Aligned_cols=161 Identities=23% Similarity=0.302 Sum_probs=129.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|.+..+...+.+|.+.++.. +...+ +.+.+|||||++.+...+..+++++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 568999999999999999999999888887777888776643 33444 78899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+... ..+++++++||+++.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999888776532 2578999999999986532 2333222221 234578999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=197.89 Aligned_cols=164 Identities=27% Similarity=0.531 Sum_probs=144.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
...++|+++|++|+|||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3568999999999999999999998888777777776555 456678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q psy8722 93 LVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVGA-VHFHTS 158 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 158 (223)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+... +.+..++..+++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 68888887654 7899999999998543 56788899999999997 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy8722 159 AKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 159 a~~~~~i~~~~~~i~~~~~~ 178 (223)
|++|.|++++|+.|.+.++.
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=192.14 Aligned_cols=165 Identities=16% Similarity=0.293 Sum_probs=123.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC--CCCCCCccccceeEEEEEEEE---CCeEEEEEEEeCCCccccccccccccccC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED--KFNEKHITTLQASFLNKKLNI---AGKRLNLAIWDTAGQERFHALGPIYYRMS 88 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (223)
+++||+++|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++
T Consensus 1 ~~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp --CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 3589999999999999999999964 555566788888876655543 23567899999999999988888899999
Q ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC---HHHHHHHHHHhCCc----EEEecCC
Q psy8722 89 NGAVLVYDITDE-DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM---QEDAEKYAQSVGAV----HFHTSAK 160 (223)
Q Consensus 89 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 160 (223)
+++++|||++++ .++..+..|+..+.... ++.|+++|+||+|+...+.+. .+...+++..++++ ++++||+
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 999999999997 58999999999887654 468999999999986554332 23345566667776 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHHH
Q psy8722 161 MNR-GIEEMFLELSQRMLEK 179 (223)
Q Consensus 161 ~~~-~i~~~~~~i~~~~~~~ 179 (223)
++. ++.++++.|.+.+...
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 8999998888776543
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=185.70 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=126.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999977766 455666543 34445555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988877642 257899999999998653 23455544432 235689999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKAQ 181 (223)
Q Consensus 167 ~~~~~i~~~~~~~~~ 181 (223)
++|++|++.+.....
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988755443
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-31 Score=203.55 Aligned_cols=169 Identities=27% Similarity=0.539 Sum_probs=141.6
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (223)
+..-...+.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP 100 (204)
Confidence 3344456789999999999999999999998888777667766554 444566777788999999999999999999999
Q ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCccccc------------cCCHHHHHHHHHHhCC-
Q psy8722 87 MSNGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQR------------TVMQEDAEKYAQSVGA- 152 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~- 152 (223)
++|++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.... .+..++..+++..+++
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 999999999999999999987 78888876543 68999999999996543 4556777888888887
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++++||++|.|++++|++|++.++
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 8999999999999999999987653
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-30 Score=191.54 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=120.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|+|||||+++|..+.+. .+.+|.+ +....+..++ +.+.+|||||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 467899999999999999999999977665 3455555 3344455555 7899999999999999988999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..+++.+... ..+++++++||+++.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999888776532 3578999999999986542 2233222211 12346899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++|++|++.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=184.54 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+++|++|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999998777 44456666443 3445555 7899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+... ...+++.+... ..+++++++||+++.|+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999999888776542 357899999999998653 23444444332 23457999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 166 EEMFLELSQR 175 (223)
Q Consensus 166 ~~~~~~i~~~ 175 (223)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=183.65 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=125.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 367899999999999999999999976543 345666643 34455554 7899999999999988888999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 165 (223)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..+... ..+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999999888776443 23578999999999986543 2333332221 22457999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEK 179 (223)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (223)
+++|++|.+.+.++
T Consensus 166 ~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 166 QDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=187.79 Aligned_cols=160 Identities=22% Similarity=0.272 Sum_probs=126.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|+|||||+++|..+.+.. +.+|.+.. ...+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 678999999999999999999998766643 45666543 34445554 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+.. ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887765532 2578999999999986543 223332221 2234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=190.59 Aligned_cols=163 Identities=22% Similarity=0.290 Sum_probs=123.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEE--EE-CCeEEEEEEEeCCCcccccccc---c
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL--NI-AGKRLNLAIWDTAGQERFHALG---P 82 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~~~~~~---~ 82 (223)
..+..+.+||+++|++|||||||++++.+. +... ++.+.++....+ .+ ++..+.+.+|||+|++.|.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 345678999999999999999999987764 3332 344433333322 23 2556789999999999987776 7
Q ss_pred cccccCCEEEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-------cccCCHHHHHHHHH----H
Q psy8722 83 IYYRMSNGAVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-------QRTVMQEDAEKYAQ----S 149 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~ 149 (223)
.+++++|++|+|||++++ +++..+..|+..+... .++.|+++|+||+|+.. .+.+..++..+++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999997 6777777777776543 35799999999999743 34455566777777 6
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++++|+++||++ .|++++|+.|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 788999999999 99999999998865
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=181.36 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=125.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+++|++|||||||++++..+.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 6789999999999999999999997766 4455666644 34445555 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+.... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888776543 357899999999998653 234444443322 23478999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEK 179 (223)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (223)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=194.38 Aligned_cols=166 Identities=20% Similarity=0.298 Sum_probs=128.1
Q ss_pred CCCCeeeEEEEECCC---------CCcHHHHHHHHhh---CCCCCCCcccc-ceeEEEEEEE--------------ECCe
Q psy8722 10 SSSTYSFKVVLLGEG---------CVGKTSVVLRYVE---DKFNEKHITTL-QASFLNKKLN--------------IAGK 62 (223)
Q Consensus 10 ~~~~~~~~I~viG~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~~--------------~~~~ 62 (223)
....+.+||+|+|.+ |||||||+++|.. ..+...+.+++ +.++....+. +++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345778999999999 9999999999997 56666666665 4443322221 4567
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------cCCEEEEEEECC
Q psy8722 63 RLNLAIWD-----------------------TAGQERFHALGPIYYR---------------------MSNGAVLVYDIT 98 (223)
Q Consensus 63 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 98 (223)
.+.+.||| ++|++++...+..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6777777777877877 799999999999
Q ss_pred CH--HHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 99 DE--DSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 99 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
++ .+++.+..|+..+... ...++|+++|+||+|+...+.+ ++..+++.. .+++++++||+++.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999988765 3457899999999999665543 567777776 4789999999999999999999988
Q ss_pred HHH
Q psy8722 175 RML 177 (223)
Q Consensus 175 ~~~ 177 (223)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=176.07 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=117.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYYR- 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 86 (223)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+.. ....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 368999999999999999999997776655566666666556666666 5789999999887642 2345554
Q ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 87 -MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999998543 3457666654 3689999999999865544432 467788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=181.68 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=121.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 83 (223)
.+.++|+|+|++|+|||||+++|.+..+.....+..+.+........++ ..+.+|||||+... ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998776544444444455444444555 67899999998321 111233
Q ss_pred ccccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH---HHHHHHHHhC--CcEEE
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE---DAEKYAQSVG--AVHFH 156 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 156 (223)
++..+|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+...+.+..+ ...+++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 4678899999999999877642 23455554432 136899999999999776666554 4566777777 79999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy8722 157 TSAKMNRGIEEMFLELSQRMLEKAQEFDL 185 (223)
Q Consensus 157 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~ 185 (223)
+||++|.|++++|++|++.+...+.....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~~ 212 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAESIL 212 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877655443
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=173.91 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=122.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 357899999999999999999999988888777777777776666777774 577999999999999999999999999
Q ss_pred EEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC---------CcEEEecC
Q psy8722 92 VLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG---------AVHFHTSA 159 (223)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa 159 (223)
|+|+|+++ ..+++.+ ......++|+++|+||+|+... ..++........+ ++++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999988 4433322 2223346899999999998653 2333333332222 47999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (223)
+++.|++++|++|++.+...
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999877654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=190.33 Aligned_cols=165 Identities=19% Similarity=0.345 Sum_probs=131.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-----HALGPIYY 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 85 (223)
..+||+++|++|||||||+++|.++... ..+.+|.+..+. .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 5689999999999999999999865322 233455555443 444444 478999999999988 67788889
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--ccc----CCHHHHHHHHHHhC---CcE
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--QRT----VMQEDAEKYAQSVG---AVH 154 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 154 (223)
+++|++|+|||++++.+++.+..|...+.... .+++|+++|+||+|+.. .+. +..+++.+++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999988766555432 35799999999999865 443 45578889999987 689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+++||++ .++.++|..+++.+....+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~~~~ 185 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPNMSN 185 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSCHHH
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999 89999999999887655544
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=181.55 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=113.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe-EEEEEEEeCCCcccccc-ccccccccCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK-RLNLAIWDTAGQERFHA-LGPIYYRMSN 89 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (223)
..+.+||+++|++|+|||||+++|....+...+. +++.++.. +.+++. .+.+.+|||||++.+.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4568999999999999999999999888776654 44444433 445533 47899999999998887 7788899999
Q ss_pred EEEEEEECCCHH-HHHHHHH-HHHHHHHH--cCCCCeEEEEEeCCCccccccCC--HHHHHHHHH---------------
Q psy8722 90 GAVLVYDITDED-SFEKVKN-WVKELKKM--LGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQ--------------- 148 (223)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--------------- 148 (223)
++|+|||+++.. ++..... |...+... ...++|+++|+||+|+....... .+.+.+...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 4555544 44444432 24578999999999986543210 011111111
Q ss_pred ------------------Hh--CCcEEEecCCCC------CCHHHHHHHHHHH
Q psy8722 149 ------------------SV--GAVHFHTSAKMN------RGIEEMFLELSQR 175 (223)
Q Consensus 149 ------------------~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~ 175 (223)
.+ +++|+++||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-28 Score=193.35 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=125.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccCCE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---LGPIYYRMSNG 90 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (223)
||+++|+.|||||||++++..+.++. ...+|.+.++.. ++ ..+.+++|||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887554432 245777776643 22 347899999999999964 35789999999
Q ss_pred EEEEEECCCH--HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc-------ccCCHHHHHHHHHH----hCCcEEEe
Q psy8722 91 AVLVYDITDE--DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ-------RTVMQEDAEKYAQS----VGAVHFHT 157 (223)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 157 (223)
+|+|||++++ .+...+..|+..+... .+++|+++++||+|+... +++..++.++++.. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3344444445555443 357999999999999653 34666677777775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 187 (223)
||++ .+|.++|..+++.+++..+..+.-.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~le~~L 183 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFLENML 183 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9997 6999999999999987766655444
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=172.19 Aligned_cols=159 Identities=21% Similarity=0.236 Sum_probs=125.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------ALGPIYYR 86 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 86 (223)
.+.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 4679999999999999999999997666555566777776666677766 678999999988774 23445554
Q ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 87 --MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 87 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
.++++++|+|..+ ++....|+..+.. .+.|+++|+||+|+...+.+. ++..+++..++++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 4999999999875 4555667766654 468999999999986655443 456778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEKA 180 (223)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (223)
++++|+++.+.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=190.59 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=146.0
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEEC-CeEEEEEEEeCCCccccc--------
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQERFH-------- 78 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~-------- 78 (223)
.+++.+.-.|+++|.+|||||||+|+|++..+. ....+.++..........+ + ..+.||||||+..+.
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~ 81 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHS 81 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHH
Confidence 345678889999999999999999999977765 2334444444444444444 4 678899999986544
Q ss_pred --cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcE
Q psy8722 79 --ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVH 154 (223)
Q Consensus 79 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 154 (223)
.....++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+........+...++...++ .++
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 4456678899999999999998888877777777765 368999999999987444555677777888875 689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccccccceeeecCCCCCCCC
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASELS----RRGSMRRNVVVVEDEDLPTSS 213 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 213 (223)
+.+||++|.|++++|++|.+.+.+....++.+...+.+ ..+..|++......+++||+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~ 221 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSI 221 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCee
Confidence 99999999999999999999886544433333222222 224466667777777777764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-27 Score=174.39 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=120.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG-----------QERFHALGPIY 84 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 84 (223)
+||+++|++|+|||||+++|.+..+...+.++.+..... +.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999888877776766554433 3333 588999999 56666666777
Q ss_pred ccc-CCEEEEEEECCCHHHHHHH-HHHHHH---------HHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCc
Q psy8722 85 YRM-SNGAVLVYDITDEDSFEKV-KNWVKE---------LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAV 153 (223)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (223)
++. ++++++|+++.+..++..+ ..|... +......++|+++|+||+|+.... .+...+++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7777777777777788776 556542 222233578999999999986654 56778888888874
Q ss_pred -------EEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 154 -------HFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 154 -------~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
++++||++|.|++++|++|.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 699999999999999999999886643
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=190.65 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=120.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|+|||||+++|....+... .+|.+..+ ..+...+ +.+.||||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999997776543 35555544 3344444 78999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHH-----hCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-----VGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 166 (223)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.... ..+++...... .+++++++||+++.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999998877666543 23578999999999986543 23333322211 23469999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLE 178 (223)
Q Consensus 167 ~~~~~i~~~~~~ 178 (223)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=176.57 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=123.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG------PIYY 85 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~ 85 (223)
+.+.++|+++|++|+|||||+|+|++..+.....++.+.+.....+..++ ..+.+|||||...+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 35789999999999999999999998776655566666666666666655 678999999988776532 4454
Q ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 86 --RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
..+|++++|+|+++.++.. .|...+.. .++|+++++||+|+...+.+. .+..+++..++++++++||+++.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999865432 34444443 378999999999986655544 34678889999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=171.15 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=116.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 83 (223)
.+.++|+++|++|+|||||+++|.+.... ....++++.++....+.+++. .+.+|||||+..+.... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999966542 333456666666777777774 57899999986542211 13
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
+++.+|++++|+|++++.++. ...|+..+......++|+++|+||+|+..... .++...+.+++++||+++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCT
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCC
Confidence 578999999999999988776 34687777776656799999999999854311 1122346689999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRML 177 (223)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (223)
|++++|++|.+.+.
T Consensus 152 gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 152 GVDVLRNHLKQSMG 165 (172)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-26 Score=169.99 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 81 (223)
....++|+|+|++|+|||||+++|.+..+.....++.+.+........++ .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 35689999999999999999999998775554445554444333344444 588999999 66666667
Q ss_pred ccccccC---CEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--HHHHH-HHHHhCCcEE
Q psy8722 82 PIYYRMS---NGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ--EDAEK-YAQSVGAVHF 155 (223)
Q Consensus 82 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~ 155 (223)
..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.+.. +++.+ +....+.+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777777 9999999999876665532 2222222 4689999999999966543321 22222 2223356899
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++||+++.|++++|++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-26 Score=164.14 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=105.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-------HALGPIYYRM 87 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 87 (223)
.||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999976643 333455555565666666664 6889999998763 3334557889
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCHH
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGIE 166 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (223)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.... ++..+++ .+++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998533322 112222222 368999999999986542 2334455 6677 89999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=195.84 Aligned_cols=165 Identities=23% Similarity=0.341 Sum_probs=126.6
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEE------E--EECCeEEEEEEEeCCCccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK------L--NIAGKRLNLAIWDTAGQERFHALGP 82 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (223)
...+.+||+++|.+|||||||+++|.+..+...+.+|.+.++.... + ..++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999988888777888888775442 1 1233357899999999999999999
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMN 162 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (223)
.+++++|++|+|+|+++. +.+..|+..+.... ++.|+++|+||+|+...+.+..++.++++...+.+++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 55677888888765 36899999999999887788888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEK 179 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (223)
.|++++++.|.+.+...
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999987654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=173.67 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=119.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----------LGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 85 (223)
.+|+++|++|+|||||+|+|++........++.+.+.....+.+++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 38999999999999999999987776666788888877777777774 788999999877654 334556
Q ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC
Q psy8722 86 --RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR 163 (223)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (223)
.++|++|+|+|+++.+....+..|+ ...++|+++|+||+|+...+... .....++..++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l------~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQL------FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHH------TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHH------HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 8899999999999876554443332 23378999999999986544332 23556788889999999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-25 Score=174.27 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYYR- 86 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 86 (223)
..++|+++|++|+|||||+|+|++........++.+.+.... .+.. ...+.+|||||+..+.. ....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999997665555455555443333 3343 46789999999887752 3455554
Q ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 87 -MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.+|++++|+|+++.+.. ..|...+.. .++|+++++||+|+...+.+. .+..+++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555544 368999999999986554443 4567788889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=163.04 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=111.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHA 79 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 79 (223)
.+....++|+|+|++|+|||||+++|.+.... ...++.+.+........+. .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 34467889999999999999999999976633 2234443333333333333 477999999 555666
Q ss_pred ccccccccC---CEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHHHHHHHHHHhC-
Q psy8722 80 LGPIYYRMS---NGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQEDAEKYAQSVG- 151 (223)
Q Consensus 80 ~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~- 151 (223)
.+..+++.+ +++++|+|+.+..+ ...+..|+... +.|+++|+||+|+.... ....++..+++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666676665 99999999987533 33333444332 58999999999985432 233355566666544
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++++++||+++.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987743
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=169.82 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=122.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------LGPIYY-- 85 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 85 (223)
+.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++. .+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999987776667778888877777777774 588999999887665 344454
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
.++|++++|+|+++.. ....|...+... ...|+++++||+|+...+.... ....+...++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998853 222333333332 1289999999999865443332 267788889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLE 178 (223)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (223)
.++|+.+.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-25 Score=173.85 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=119.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----------GPI 83 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 83 (223)
++++|+++|++|+|||||+|+|++..+.....++++.+.....+...+ ..+.+|||||...+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998777666677777777777777666 45778999998876632 122
Q ss_pred c--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 Y--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+ ...+|++|+|+|+++.+....+.. .+... ++|+++|+||+|+...+.. ......++..++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~~---~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTL---QLLEL---GIPCIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHH---HHHHH---TCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHH---HHHhc---CCCEEEEEECccchhhhhH-HHHHHHHHHhcCCCEEEEEcCC
Confidence 2 268999999999998665544433 33333 6899999999998654332 1235677888899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRML 177 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~ 177 (223)
|.|++++|++|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=168.48 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=126.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA---------LGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 83 (223)
...++|+++|++|+|||||+++|.+........+..+.......+..++ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999997665433334444444444444454 5789999999754321 1123
Q ss_pred ccccCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
+...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+..... .++..+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999999876 67777888888877654 689999999999865443 2456667777889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
|+|+++++++|.+.+........
T Consensus 320 g~gi~~l~~~i~~~l~~~~~~~~ 342 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLAEKVA 342 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999876655543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=168.94 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=107.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
...+.++|+++|++|+|||||+++|....+.. .+.++.+.++ ....+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 35678999999999999999999999777654 2344443332 33568999999999998888888877
Q ss_pred ----CCEEEEEEECC-CHHHHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCccccccCC------HHHHHHHHHHhCC
Q psy8722 88 ----SNGAVLVYDIT-DEDSFEKVKNWVKELKKM----LGNDICLTIAGNKIDLEKQRTVM------QEDAEKYAQSVGA 152 (223)
Q Consensus 88 ----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~ 152 (223)
+|++|+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+...+.+. .++..+++...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888898888888777654 34579999999999997665433 4556677777778
Q ss_pred cEEEecCCCCCC
Q psy8722 153 VHFHTSAKMNRG 164 (223)
Q Consensus 153 ~~~~~Sa~~~~~ 164 (223)
+++++|++++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998865
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-25 Score=176.78 Aligned_cols=191 Identities=21% Similarity=0.175 Sum_probs=124.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--------FHALGPI 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (223)
.+..+|+++|.+|+|||||+|+|++..+. ....+.++.+........++ ..+.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 46678999999999999999999977664 23334344433333333344 6789999999765 3344456
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-C-CcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWV-KELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-G-AVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 160 (223)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+..... ...+.+..+ + .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence 789999999999998864433 3443 3444332 4689999999999865432 022233332 3 368999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhh-hhh----hhccccccceeeecCCCCCCC
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQEFDLAKA-SEL----SRRGSMRRNVVVVEDEDLPTS 212 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~ 212 (223)
++.|++++++.|.+.+.+....++.... .+. ...+..|++......+++|++
T Consensus 156 ~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~ 212 (301)
T 1wf3_A 156 DERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYA 212 (301)
T ss_dssp CHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCce
Confidence 9999999999998876443322222211 111 122445666666666666664
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-24 Score=178.48 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=117.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ----------ERFHALG 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 81 (223)
+..+||+++|.+|+|||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999976653 445566777766667777774 5889999997 3333332
Q ss_pred c-cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcEE
Q psy8722 82 P-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVHF 155 (223)
Q Consensus 82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (223)
. .+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+...+....++.. ++... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467889999999999998877665 46666554 46899999999999765554333332 22232 357999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++||++|.|++++|+.+.+.+.....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998876543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=176.32 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=101.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (223)
..++|+++|++|+|||||+|+|.+.. ......++++.+.....+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 46899999999999999999999664 3345567777777777777877 578999999987655433 346
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++++|+|++++.++..+..+...+.... ++|+++|+||+|+...... ...++......+++++||+++.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 799999999999999887754444433333332 6899999999998665432 22334443346899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRML 177 (223)
Q Consensus 165 i~~~~~~i~~~~~ 177 (223)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-24 Score=164.41 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCC--CCCCccccceeEEEEEEEEC-CeEEEEEEEeCCCc----------ccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKF--NEKHITTLQASFLNKKLNIA-GKRLNLAIWDTAGQ----------ERF 77 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~ 77 (223)
+....++|+|+|.+|+|||||+++|++... .....++.+..... ..+. .....+.||||||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 345689999999999999999999997652 22333333333322 2232 22357889999994 333
Q ss_pred cccccccccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHH---
Q psy8722 78 HALGPIYYRM---SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQS--- 149 (223)
Q Consensus 78 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--- 149 (223)
......++.. +|++++|+|+.+..+. ....|+..+.. .++|+++|+||+|+....... .+...+....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 4444555555 7889999999875332 22334444443 468999999999986543221 1222233333
Q ss_pred ----hCCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 150 ----VGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 150 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999998876553
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=176.16 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=123.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG----------QERFHAL 80 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (223)
....++|+++|.+|+|||||+++|.+.. ......++++.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 4567999999999999999999999554 34455566676666666777774 688999999 5556555
Q ss_pred cc-cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----CCcE
Q psy8722 81 GP-IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----GAVH 154 (223)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 154 (223)
.. .+++.+|++|+|+|+++..+ +....|...+.. .++|+++|+||+|+...+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 44 36789999999999998543 223345555544 46899999999999876666667777666655 5799
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (223)
+++||++|.|++++|+.+.+.+........
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999998876654433
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-24 Score=176.80 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=116.4
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG------- 81 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------- 81 (223)
.+..+.++|+|+|+.|+|||||+++|++..+. ....++++.+.....+.+.+. ..+.+|||||++.+....
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 34567899999999999999999999976653 344555566666666666654 278899999998776553
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
..++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...... +...+++..++++++++||++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCC
Confidence 3378899999999999433 2345566666654 6899999999999766543 666677777889999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRML 177 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~ 177 (223)
+.|++++|++|.+.+.
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999998773
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=165.48 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=124.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE---------RFHALGP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~ 82 (223)
.+..+|+++|++|+|||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45668999999999999999999977653 22233333332223333444 578899999986 2344456
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
.++..+|++++|+|+.+ +.....|+... ....+.|+++++||+|+........+...++...+++ .++.+||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~--l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNK--LREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHH--HHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHH--HHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 77899999999999976 32333333222 2234689999999999865222223445556666676 689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccccccceeeecCCCCCCC
Q psy8722 162 NRGIEEMFLELSQRMLEKAQEFDLAKASELS----RRGSMRRNVVVVEDEDLPTS 212 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 212 (223)
+.|++++++.+...+.+....++.....+.+ ..+..|++......+++|++
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~ 213 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYS 213 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred CCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999999999987654332222111111111 12334556666666666665
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=164.39 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=116.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccc---cCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE----RFHALGPIYYR---MSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~---~~d 89 (223)
+|+|+|.+|||||||+++|+.........+.++.......+.+++. ..+.+|||||.. .+..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6889999999999999999965433222333333333334445432 468899999953 33344455544 499
Q ss_pred EEEEEEECCC---HHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCC
Q psy8722 90 GAVLVYDITD---EDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 162 (223)
++|+|+|+++ +.+++.+..|+..+..... .++|+++|+||+|+.... +..+++...+. .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999999887642 478999999999985432 44566667766 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLE 178 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (223)
.|+++++++|.+.+.+
T Consensus 315 ~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 315 EGLRELLFEVANQLEN 330 (342)
T ss_dssp STTHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887743
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=168.13 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=117.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE-RFHAL--------GPIY 84 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~ 84 (223)
.++|+++|.+|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999996543 345567777777777777877 568899999987 55432 2346
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+... +..++..+++. .+.+++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999887765543 22222 36899999999999643 34455544432 446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLE 178 (223)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (223)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=165.02 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=104.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 85 (223)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999966543 455677777777777778875 5789999997642 23345678
Q ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH-HHHHHHhCC-cEEEecCCC
Q psy8722 86 RMSNGAVLVYDITDEDSFEK--VKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA-EKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 161 (223)
+++|++++|+|+.++.+... +..|+. . .++|+++|+||+|+.... ..+. .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 333332 2 258999999999975321 1222 3443 5676 789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (223)
|.|+.++++++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=149.31 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=106.6
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc--ccceeEEEEEEEECCeEEEEEEEeCCCcc----------
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT--TLQASFLNKKLNIAGKRLNLAIWDTAGQE---------- 75 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------- 75 (223)
...+....++|+|+|++|+|||||+|+|++..+.....+ +.+.......+.+++ ..+.||||||..
T Consensus 22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHH
T ss_pred cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHH
Confidence 444557789999999999999999999998777655444 455555555666776 467899999943
Q ss_pred -ccccccccccccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC------HHHHHHH
Q psy8722 76 -RFHALGPIYYRMSNGAVLVYDITDEDS--FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM------QEDAEKY 146 (223)
Q Consensus 76 -~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~ 146 (223)
.+......+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 233334455678899999999875332 22233333322222 135999999999985543332 2467788
Q ss_pred HHHhCCcEEEecCCCC-----CCHHHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMN-----RGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 178 (223)
+...+..++..+...+ .++.++|+.+...+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888988888776644 5778888777666543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=160.18 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=114.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEE----------------EEEEE---CCeEEEEEEEeC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN----------------KKLNI---AGKRLNLAIWDT 71 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~i~D~ 71 (223)
...+.++|+++|++++|||||+++|++.......... ...... ..... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4567899999999999999999999864433211000 000000 00000 122367899999
Q ss_pred CCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHH
Q psy8722 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQS 149 (223)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~ 149 (223)
||++.|...+...+..+|++|+|+|+++..++.....|+..+.... ..|+++++||+|+.+.... ..++..++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888889999999999999999876777777777766553 2489999999998654321 11223333322
Q ss_pred h---CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 150 V---GAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 150 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
. +++++++||++|.|++++++.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 56899999999999999999888754
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=157.12 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=100.2
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHc-CCCCeE
Q psy8722 55 KKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKML-GNDICL 123 (223)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ 123 (223)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3344554 789999999999999999999999999999999999 456777777777766532 257999
Q ss_pred EEEEeCCCccccc---------------cCCHHHHHHHHH-----------HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 124 TIAGNKIDLEKQR---------------TVMQEDAEKYAQ-----------SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 124 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+|++||.|+...+ .+..+++.+++. ..++.+++|||+++.||.++|+++.+.++
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985332 356788888876 34568899999999999999999999887
Q ss_pred HH
Q psy8722 178 EK 179 (223)
Q Consensus 178 ~~ 179 (223)
..
T Consensus 344 ~~ 345 (353)
T 1cip_A 344 KN 345 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=153.23 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccc-cceeEEEEEEEECCeEEEEEEEeCCCccccccccc------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITT-LQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGP------ 82 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~------ 82 (223)
+..+.++|+|+|++|||||||+++|++.. +.....++ ++.........+++ ..+.||||||+..+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34568999999999999999999999665 44444444 45555555556666 4688999999876543222
Q ss_pred -----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEEe-CCCccccccCCH-------HHHHHHH
Q psy8722 83 -----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGN-KIDLEKQRTVMQ-------EDAEKYA 147 (223)
Q Consensus 83 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~ 147 (223)
.+++.+|++|+|+|+.+.... ...++..+....+. ..|.++++| |+|+.... +.. +++.+++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 256889999999999862221 11122333333221 346666665 99986431 111 2244466
Q ss_pred HHhCCc---E--EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 148 QSVGAV---H--FHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 148 ~~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
..++.. + +.+||+++.|++++|++|.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 666543 2 67999999999999999999887643
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=164.89 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=112.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-------FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIY 84 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 84 (223)
..+.++|+++|+.++|||||+++|++.. +..+..++++.+.....+.+++ ..+.+|||||+++|...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3568999999999999999999999655 3334444555555444555666 678899999999998888888
Q ss_pred cccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHh----CCcEE
Q psy8722 85 YRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSV----GAVHF 155 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~ 155 (223)
+..+|++|+|+|+++ +++.+.+. .+.. .++|+++++||+|+.+... ...+++.+++... +.+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999998 44444432 2332 2578899999999864321 1234455566555 56899
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.+||++|.|+++++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999888764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-22 Score=168.00 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=106.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG--------PIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (223)
..++|+++|++|+|||||+|+|.+... .....++++.++....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 468999999999999999999996543 244456777776666777777 567899999976544332 336
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRG 164 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (223)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ...++. .+.+++++||+++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998765544 34444442 36999999999986654432 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=167.56 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=111.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC--CCC-----CC------ccccceeEE--EEEEEE---CCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK--FNE-----KH------ITTLQASFL--NKKLNI---AGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~~ 75 (223)
+-.||+++|+.++|||||+++|+... ... .. ....|.++. ...+.+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998421 111 00 011122222 222222 4567899999999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC---
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA--- 152 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 152 (223)
+|...+..++..+|++|+|+|+++..++.....|..... .++|+++++||+|+...+ ..+...++...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888889999999999999999777777777766554 368999999999996543 23445566666776
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.++.+||++|.|+++++++|.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999887664
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=154.34 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=97.5
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCe
Q psy8722 54 NKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDIC 122 (223)
Q Consensus 54 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p 122 (223)
...+.+++ +.+++||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.... ..++|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 33444555 78999999999999999999999999999999765 4556666666666554332 25799
Q ss_pred EEEEEeCCCccccc----------------cCCHHHHHHHHH----------HhCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 123 LTIAGNKIDLEKQR----------------TVMQEDAEKYAQ----------SVGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 123 ~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++++||+|+...+ ....+++.+++. ..++.++++||+++.||..+|+.+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999985543 456778877743 3456789999999999999999999998
Q ss_pred HHH
Q psy8722 177 LEK 179 (223)
Q Consensus 177 ~~~ 179 (223)
++.
T Consensus 317 l~~ 319 (327)
T 3ohm_A 317 LQL 319 (327)
T ss_dssp HHT
T ss_pred HHH
Confidence 865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=156.41 Aligned_cols=165 Identities=18% Similarity=0.073 Sum_probs=112.2
Q ss_pred eeeE-EEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q psy8722 14 YSFK-VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---------FHALGPI 83 (223)
Q Consensus 14 ~~~~-I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 83 (223)
..++ |+++|++|+|||||+|+|.+........++.+.+.....+.+++ ..+.+|||+|... +.... .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-H
Confidence 3455 99999999999999999997766555556666666677778887 4678999999622 22222 2
Q ss_pred ccccCCEEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHHh---CCcEEEe
Q psy8722 84 YYRMSNGAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSV---GAVHFHT 157 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~ 157 (223)
.+..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+...... ..+.+..++..+ +.+++.+
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 468899999999999876 5666767777776654457899999999998543210 011233334554 2368999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~~~~ 181 (223)
||+++.|++++++.|.+.+.....
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ECCCCcCHHHHHHHHHHHhcccCC
Confidence 999999999999999887765433
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=163.68 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=108.8
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLN 58 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (223)
.+....+||+++|++++|||||+++|+... ...+..++++.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 345678999999999999999999995321 1112224455555555555
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---HHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccc
Q psy8722 59 IAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---FEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEK 134 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (223)
.++ ..+.||||||+++|...+...+..+|++|+|+|+++... |+...++...+......++| +++++||+|+..
T Consensus 92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 555 578999999999998888888999999999999998532 11111222222222223566 999999999843
Q ss_pred c------ccCCHHHHHHHHHHhC------CcEEEecCCCCCCHHHHHH
Q psy8722 135 Q------RTVMQEDAEKYAQSVG------AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 135 ~------~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 170 (223)
. .....++...++..++ ++++.+||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2 1112244455555555 4699999999999999765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=165.76 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=115.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-------------CccccceeEEEEEEEE---CCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-------------HITTLQASFLNKKLNI---AGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G 73 (223)
.++..||+++|+.++|||||+++|+.. .+... ...+.+.......+.+ ++..+.+.||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999742 21110 0111111111112222 45668999999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA- 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 152 (223)
+.+|...+..++..+|++|+|+|+++..+......|..... .++|+++++||+|+.... ..+...++...+++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 99998888888999999999999999877777777766553 368999999999986543 23345566666676
Q ss_pred --cEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 153 --VHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 153 --~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+++.+||++|.|++++|++|.+.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999887664
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=159.57 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=103.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC---CCCCCCcc--ccceeEEEEEEEE-------------C--C----eEEEEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED---KFNEKHIT--TLQASFLNKKLNI-------------A--G----KRLNLAI 68 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 68 (223)
.+.++|+++|+.++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 56799999999999999999999843 33344344 3333333322211 1 1 1368999
Q ss_pred EeCCCccccccccccccccCCEEEEEEECCC----HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHH
Q psy8722 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITD----EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQED 142 (223)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~ 142 (223)
|||||++.|...+...+..+|++|+|+|+++ +++++.+.. +... ...|+++++||+|+..... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999988777777788999999999995 444444432 2222 1247999999999965433 23455
Q ss_pred HHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 143 AEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 143 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+.+++.. .+++++++||++|.|+++++++|.+.+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 6666654 356899999999999999999988654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=159.68 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=109.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC---CCCCCCccccce--eEEEEEEEE-------------C--C----eEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED---KFNEKHITTLQA--SFLNKKLNI-------------A--G----KRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~---~~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 67 (223)
..+.++|+++|+.++|||||+++|++. .+..+..++++. .+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 467899999999999999999999843 333343443333 333222211 1 1 136799
Q ss_pred EEeCCCccccccccccccccCCEEEEEEECCC----HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHH
Q psy8722 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITD----EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQE 141 (223)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 141 (223)
||||||++.|.......+..+|++|+|+|+++ +++.+.+.. +.... ..|+++++||+|+..... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 99999999988777777788999999999995 344444432 22221 257999999999865432 1234
Q ss_pred HHHHHHHH---hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 142 DAEKYAQS---VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 142 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
++.+++.. .+++++.+||+++.|+++++++|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 44555543 356899999999999999999887654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=164.65 Aligned_cols=152 Identities=21% Similarity=0.198 Sum_probs=99.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC--C-----------------------------CCCCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK--F-----------------------------NEKHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (223)
.+.+||+++|++++|||||+++|+... + ..+...+++.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 457999999999999999999997431 1 11112233333333333333
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHH------HHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEK------VKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
...+.||||||+++|...+..++..+|++|+|+|+++..++.. ....+..... . ...|+++++||+|+.+.
T Consensus 110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT
T ss_pred -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc
Confidence 3678999999999999888899999999999999998754322 1122222222 2 12469999999999754
Q ss_pred ccCCHHH----HHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 136 RTVMQED----AEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 136 ~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
++...++ +..++..++ ++++++||++|.|+.++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3322333 333444443 57899999999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=145.31 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCC---CCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM- 87 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (223)
..+.++|+++|++|+|||||+++|.+..+.. ...++.+.++ ..+.+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3678999999999999999999999776543 2223332222 23568899999999888777777766
Q ss_pred ---CCEEEEEEECC-CHHHHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCcccccc
Q psy8722 88 ---SNGAVLVYDIT-DEDSFEKVKNWVKELKKM----LGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999998888776654 235799999999999866543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=158.57 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG---------- 81 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (223)
...++|+++|++|||||||+|+|.+... .....++++.+.....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 4569999999999999999999996653 2344556666666666777875 57899999974332211
Q ss_pred --ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH-HHHHH----hCCcE
Q psy8722 82 --PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE-KYAQS----VGAVH 154 (223)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~ 154 (223)
..++..+|++++|+|+.+..+.... .+...+.. .+.|+++++||+|+...+....++.. .+... .+.++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2356789999999999886555432 22233332 36899999999998655443344333 22222 35689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 155 FHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
+++||++|.|++++|+.+.+.+....
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999998776554
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=153.66 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=93.4
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCC
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDICLTIAGNKI 130 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 130 (223)
..+.+.+|||+|++.++..+..++++++++|+|||++ +..++.....|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788888888888776542 2579999999999
Q ss_pred Ccccccc--C-------------------CHHHHHHHHHH----------------hCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 131 DLEKQRT--V-------------------MQEDAEKYAQS----------------VGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 131 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|+...+. + ..+++.+++.. ..+.+++|||+++.||.++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9844321 1 13556666432 123468999999999999999999
Q ss_pred HHHHHHH
Q psy8722 174 QRMLEKA 180 (223)
Q Consensus 174 ~~~~~~~ 180 (223)
+.+++..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-23 Score=174.24 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=115.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..+|+++|++++|||||+++|....+.....++++.++....+..++. ..+.||||||++.|..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 35678999999999999999999976666556666666655544444221 36889999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHH---HHHh--CCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKY---AQSV--GAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~ 166 (223)
+|+|+++........ .+......++|+++++||+|+...... ..++...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e----~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVE----SIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHH----HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHH----HHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999865443333 333333457899999999998643221 11122111 1112 2478999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999988655
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=150.60 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=92.9
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-cCCCCeEE
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKM-LGNDICLT 124 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~i 124 (223)
.+.+++ +.+.+|||+|++.+...+..++++++++|+|||+++ ..++.....|+..+... ...++|++
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 344444 789999999999999999999999999999999999 67888888888777653 23579999
Q ss_pred EEEeCCCccccc----------------cCCHHHHHHHHH-----------HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 125 IAGNKIDLEKQR----------------TVMQEDAEKYAQ-----------SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 125 vv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
|++||+|+...+ .+..+++.+++. ..++.++++||+++.||.++|+++.+.++
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999985332 256777777652 34567899999999999999999999887
Q ss_pred HHH
Q psy8722 178 EKA 180 (223)
Q Consensus 178 ~~~ 180 (223)
+..
T Consensus 353 ~~~ 355 (362)
T 1zcb_A 353 HDN 355 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=153.83 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=91.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh-CCCCCCC-------ccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE-DKFNEKH-------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF------- 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 77 (223)
...++|+|+|.+|+|||||+|+|.. ..+...+ .+|.+.+.....+..++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3579999999999999999999874 3344443 456666666666656666678999999996322
Q ss_pred cccc-------cccc-------------ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 78 HALG-------PIYY-------------RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 78 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
.... ..++ ..+|+++++++.........-..++..+.. ++|+++|+||+|+.....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 1111 1222 237899999977652211122233333332 689999999999753322
Q ss_pred C--CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 138 V--MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
. ..+.+.+.+...+++++.+|+.+++|+.+++++|.+.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 1 1133455566778999999999999999998887654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=150.51 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=98.1
Q ss_pred EEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHc-CCCCeEEE
Q psy8722 57 LNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKML-GNDICLTI 125 (223)
Q Consensus 57 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~iv 125 (223)
+.+++ +.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+.... ..++|++|
T Consensus 212 ~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiL 289 (402)
T 1azs_C 212 FQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289 (402)
T ss_dssp EEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEE
T ss_pred eecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEE
Confidence 44444 789999999999999999999999999999999999 889999999998887642 35789999
Q ss_pred EEeCCCcccccc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEecCCCC
Q psy8722 126 AGNKIDLEKQRT---V---------------------------MQEDAEKYA-----QS--------VGAVHFHTSAKMN 162 (223)
Q Consensus 126 v~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~ 162 (223)
|+||+|+...+. + ..+++.+++ .. .++.++++||+++
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 999999844322 1 134555553 22 2456789999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (223)
.||.++|..+.+.++....
T Consensus 370 ~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 370 ENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999888876543
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=161.38 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=83.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC------------------C----CCccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN------------------E----KHITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
.+..+|+|+|++|+|||||+++|+..... . ....+++.......+.+++ +.+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 45789999999999999999999611100 0 0012222233333444555 6789999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+.+|......+++.+|++|+|+|+++........-|.. + ...++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~---~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-C---RLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-H---HTTTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-H---HHcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999998766655554432 2 234689999999999854
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-22 Score=165.24 Aligned_cols=151 Identities=14% Similarity=0.204 Sum_probs=97.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE--------RFHALGPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 86 (223)
.+|+++|.+|||||||+|+|.+.... ....++.+.+.....+.+.+ ..+.+|||||.+ .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999966553 23344555555444444444 468899999975 44555667889
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCCCH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNRGI 165 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 165 (223)
.+|++|+|+|+.++.+.... .+...++ ..++|+++|+||+|+..... +..++. .+++ +++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 99999999999986554432 2222232 24789999999999854321 111222 3455 7899999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
.++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999987764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=163.88 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----------------------------CccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-----------------------------HITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (223)
.+.+||+++|+.++|||||+++|+.. .+... ...+++.+.....+..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56799999999999999999999853 33211 012233333333333333
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc----CCCC-eEEEEEeCCCccccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDI-CLTIAGNKIDLEKQR 136 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-p~ivv~nK~Dl~~~~ 136 (223)
..+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|......+. ..+. ++++++||+|+.+..
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 578999999999998888889999999999999999 67776554433332221 1233 689999999986521
Q ss_pred ------cCCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 137 ------TVMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 137 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
....+++.+++..++ ++++++||++|.|+.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112355667777766 5799999999999986654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-20 Score=157.64 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=107.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCC----ccccceeEEEEEE------------EECCeEEEEEEEeCCCcccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH----ITTLQASFLNKKL------------NIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 77 (223)
+.++|+++|++++|||||+++|.+..+.... .++.+..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999865443221 1222322221100 00001125889999999999
Q ss_pred ccccccccccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-------------H-
Q psy8722 78 HALGPIYYRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-------------Q- 140 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~- 140 (223)
..++..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999999 666655442 222 368999999999985432110 0
Q ss_pred --H-------HHHHHHHHhC---------------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 141 --E-------DAEKYAQSVG---------------AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 141 --~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+ +..+.....+ ++++.+||++|.|+++++++|...+..
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 1111122222 278999999999999999999886653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=157.50 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=106.3
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------Ccc---------------------ccceeEEEE
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDK--FNEK----------HIT---------------------TLQASFLNK 55 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~---------------------~~~~~~~~~ 55 (223)
.....+.+||+++|+.++|||||+++|+... +... ... +++.+....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3344677999999999999999999998432 1110 001 112222222
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
.+..++ ..+.||||||+++|...+..++..+|++|+|+|+++... .....|+..+... ...|+++++||+|+.+.
T Consensus 98 ~~~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 98 YFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTS
T ss_pred EeecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcc
Confidence 233333 578899999999998888888999999999999998542 2233444444432 12369999999998652
Q ss_pred cc----CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q psy8722 136 RT----VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 136 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 170 (223)
.. ...++..+++..++ ++++++||++|.|+.++++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 21 12345666777777 5799999999999988544
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-21 Score=159.12 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=88.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh-CCCCCCCc--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE-DKFNEKHI--------TTLQASFLNKKLNIAGKRLNLAIWDTAGQ-------ER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (223)
...++|+|+|++|+|||||+++|.+ ..+...+. ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3468999999999999999999874 33333322 34444443333444566678999999998 55
Q ss_pred cccccc-------cccccC-------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 77 FHALGP-------IYYRMS-------------NGAVLVYDITDEDSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+..+.. .++..+ |+++|+++.. ..++..+. .|+..+ ..++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555554 444433 3444444431 33444443 333333 357899999999998665
Q ss_pred ccCCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 136 RTVMQ--EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 136 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
+.+.. +++.+++..++++++++||+++.+ ++.|.++.+.+...
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 54433 466677777889999999999999 88898888887654
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=153.90 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=107.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
+|+++|++++|||||+++|+ ..+++.+.....+..++ ..+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 22333333333444444 468999999999998777778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEe-CCCccccccCC--HHHHHHHHHHhC---CcEEE--ecCCC---CCC
Q psy8722 97 ITDEDSFEKVKNWVKELKKMLGNDICL-TIAGN-KIDLEKQRTVM--QEDAEKYAQSVG---AVHFH--TSAKM---NRG 164 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~~ 164 (223)
++ ..+....+|+..+... ++|. ++++| |+|+ +..... .+++.+++...+ ++++. +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3445555666655543 4676 88899 9998 432211 134555554443 58999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8722 165 IEEMFLELSQRMLEK 179 (223)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (223)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998876554
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=148.64 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=93.1
Q ss_pred EEEEEEEeCCCccccccccccccccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q psy8722 63 RLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDIT----------DEDSFEKVKNWVKELKKML-GNDICLTIAGNKID 131 (223)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 131 (223)
.+.+++||++|++.++..|..|+++++++|+|||++ +..++.....|+..+.... ..++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 6677877777777665532 35799999999999
Q ss_pred ccccc---------------cCCHHHHHHHHHH-h--------------------------CCcEEEecCCCCCCHHHHH
Q psy8722 132 LEKQR---------------TVMQEDAEKYAQS-V--------------------------GAVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 132 l~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~~~ 169 (223)
+...+ ....+++.+++.. . .+.++++||+++.||..+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 84321 1235555554432 2 3568899999999999999
Q ss_pred HHHHHHHHH
Q psy8722 170 LELSQRMLE 178 (223)
Q Consensus 170 ~~i~~~~~~ 178 (223)
+.+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-21 Score=162.17 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------------------------CCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE-----------------------------KHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (223)
.+.++|+++|+.++|||||+++|+. +.+.. +...+++.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 5679999999999999999999973 22210 0012223333333344444
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccc-
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQR- 136 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 136 (223)
..+.||||||+++|...+...+..+|++|+|+|+++.. +|+...+|...+......++| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57889999999999988888899999999999999863 333222333333333334677 99999999985321
Q ss_pred -----cCCHHHHHHHHHHh-C------CcEEEecCCCCCCHHHHH
Q psy8722 137 -----TVMQEDAEKYAQSV-G------AVHFHTSAKMNRGIEEMF 169 (223)
Q Consensus 137 -----~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~~ 169 (223)
....++..+++... + ++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223466666665 3 569999999999998766
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=155.81 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=105.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCC-------CCCC-------CccccceeEEEEEEEECCeEEEEEEEeCCCcccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDK-------FNEK-------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA 79 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (223)
+.+||+++|+.++|||||+++|.... +... .....+.++......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57999999999999999999998531 1100 001122222222233333335788999999999888
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHHhC----
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQSVG---- 151 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 151 (223)
.+..++..+|++|+|+|+++....+... ++..+.. .++| +++++||+|+..... ...+++.+++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999999854333222 2233333 2578 689999999864211 12245666777766
Q ss_pred -CcEEEecCCCCCC----------HHHHHHHHHHHH
Q psy8722 152 -AVHFHTSAKMNRG----------IEEMFLELSQRM 176 (223)
Q Consensus 152 -~~~~~~Sa~~~~~----------i~~~~~~i~~~~ 176 (223)
++++++||+++.| +.++++.|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999998764 666666665443
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-21 Score=158.54 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=102.4
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhC--------CCCCC---------CccccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVED--------KFNEK---------HITTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
...+.++|+++|++++|||||+++|... .+... ...+.+.+. ....++.....+.||||||
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCC
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCC
Confidence 3467899999999999999999999852 11100 012223333 2333333336788999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHH
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQS 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~ 149 (223)
+++|...+..++..+|++|+|+|+++... .....|+..+... ++| +++++||+|+..... ...++..+++..
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999988643 3344555555443 578 889999999864211 112355666766
Q ss_pred hC-----CcEEEecCCCCCC
Q psy8722 150 VG-----AVHFHTSAKMNRG 164 (223)
Q Consensus 150 ~~-----~~~~~~Sa~~~~~ 164 (223)
++ ++++++||+++.|
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHH
T ss_pred hcccccCCCEEEccHHHhhh
Confidence 65 5899999999987
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=159.55 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=104.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC-------------------------------ccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-------------------------------ITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 60 (223)
..+.+||+++|++++|||||+++|+........ .++++.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999999854322111 1233444444444444
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHH---HHHHHHHHHHHHHHcCCC-CeEEEEEeCCCccccc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDS---FEKVKNWVKELKKMLGND-ICLTIAGNKIDLEKQR 136 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~ 136 (223)
+ ..+.||||||++.|...+..++..+|++|+|+|+++... +.....+...+......+ .|++||+||+|+....
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 4 578999999999998888889999999999999987521 101112222222222223 4599999999986532
Q ss_pred cCC----HHHHHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 137 TVM----QEDAEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 137 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
... .+++..++...+ ++++.+||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222 233444445444 58999999999999876
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-21 Score=165.27 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=108.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++..+|+++|+.++|||||+++|....+.....++++.+.....+..++ ..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999986555544444454444333344444 36789999999999999999999999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc--cCCHH--HHHHHHHHhC--CcEEEecCCCCC
Q psy8722 93 LVYDITDE---DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR--TVMQE--DAEKYAQSVG--AVHFHTSAKMNR 163 (223)
Q Consensus 93 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~ 163 (223)
+|+|+++. ++.+.+ ..+. ..++|+++++||+|+.... .+..+ +...+...++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999883 333222 2222 2368999999999986431 11100 0000112233 689999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999998864
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-20 Score=157.07 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=103.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----------------------------CccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK-----------------------------HITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 60 (223)
..+.++|+++|++++|||||+++|+.. .+... ...+++.+.....+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356899999999999999999999853 22110 01223333333333334
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SFE---KVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (223)
+ ..+.||||||+++|...+..++..+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.
T Consensus 84 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 84 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred C--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 4 67999999999999888888899999999999999763 221 22222222222 2455 89999999986
Q ss_pred cccc----CCHHHHHHHHHHhC-----CcEEEecCCCCCCHHHH
Q psy8722 134 KQRT----VMQEDAEKYAQSVG-----AVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 134 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 168 (223)
.... ...+++.+++..++ ++++++||++|.|+.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3111 12244566666666 58999999999999754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=136.72 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=88.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR----- 86 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 86 (223)
.+.++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46899999999999999999999976642 23233334444445555666 47889999999887666555443
Q ss_pred ----cCCEEEEEEECCCHHHHHHH-HHHHHHHHHHcCCC--CeEEEEEeCCCccccccCC
Q psy8722 87 ----MSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVM 139 (223)
Q Consensus 87 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~ 139 (223)
.+|++++|++++... +... ..|+..+....+.+ .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999998754 4333 46777777765543 4899999999985444333
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=163.07 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=106.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC-------CCC-------CCccccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK-------FNE-------KHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
...+.+||+++|+.++|||||+++|+... +.. ....+.|.++....+.++.....+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 44678999999999999999999998531 000 0011222222222233333346789999999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCcccccc---CCHHHHHHHHHHhC-
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRT---VMQEDAEKYAQSVG- 151 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~- 151 (223)
|...+..++..+|++|+|+|+++.... ....|+..+... ++| +++++||+|+..... ...+++.+++..++
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 988888889999999999999985432 233444444443 577 789999999864221 12245666777766
Q ss_pred ----CcEEEecCCCC--------CCHHHHHHHHHH
Q psy8722 152 ----AVHFHTSAKMN--------RGIEEMFLELSQ 174 (223)
Q Consensus 152 ----~~~~~~Sa~~~--------~~i~~~~~~i~~ 174 (223)
++++++||++| .|+.++++.|.+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 58999999999 346666665554
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-20 Score=163.00 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC-------------------------------CCCCCccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK-------------------------------FNEKHITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (223)
....+||+++|++++|||||+++|+... +..+..++++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996311 111112344444444444443
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED---SF---EKVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (223)
...+.||||||++.|...+...+..+|++|+|+|+++.. .+ ......+..+.. .++| +++|+||+|+.
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 367889999999999988888999999999999998532 11 111111222222 2455 89999999986
Q ss_pred ccccCC----HHHHHHHH-HHhCC-----cEEEecCCCCCCHH
Q psy8722 134 KQRTVM----QEDAEKYA-QSVGA-----VHFHTSAKMNRGIE 166 (223)
Q Consensus 134 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 166 (223)
...... .+++..++ ...++ +++.+||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 522111 13333444 33454 68999999999998
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=144.70 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=100.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC------Cccc----------------------ccee------------
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK------HITT----------------------LQAS------------ 51 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~------~~~~----------------------~~~~------------ 51 (223)
....++|+|+|.+|+|||||+|+|++..+.+. ..++ .+.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999997776321 1122 0000
Q ss_pred -------E----EEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccCCEEE-EEEECCCHHHHHHH
Q psy8722 52 -------F----LNKKLNIAGKRLNLAIWDTAGQER-------------FHALGPIYYRMSNGAV-LVYDITDEDSFEKV 106 (223)
Q Consensus 52 -------~----~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 106 (223)
+ ....+... ....+.||||||... +......+++.++.+| +|+|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 00000111 125689999999642 3344566778888776 79999875444333
Q ss_pred HHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH--hC-CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 107 KNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS--VG-AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
..|+..+ ...+.|+++|+||+|+........+........ .+ .+++++||+++.|++++++.|.+
T Consensus 182 ~~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 182 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3333333 335789999999999865443223222211011 12 35788999999999999999887
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-19 Score=153.05 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=96.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCC--------ccccccccccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAG--------QERFHALGPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 84 (223)
...+|+|+|.+|||||||+|+|.+..+. ....++.+.+.....+...+ ..+.+||||| ++.+......+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 4579999999999999999999966553 23334444443333333333 5789999999 55666677778
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (223)
++.+|++|+|+|..+..+. ...|+..+.+ ..++|+++|+||+|+.... ....++. .+++ .++.+||++|.
T Consensus 100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTA--ADEEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHCSEEEEEEESSSCSCH--HHHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred HhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence 8999999999998764322 2233322222 2478999999999975332 1111222 2333 56899999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|+.++++.+.+.+
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999987654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=150.93 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=81.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc------------------cccceeEEEEEEEECCeEEEEEEEeCCC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI------------------TTLQASFLNKKLNIAGKRLNLAIWDTAG 73 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (223)
..+..+|+++|+.|+|||||+++|.......... ...+.......+... .+.+.+|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 4567899999999999999999998332211000 112222222333333 37789999999
Q ss_pred ccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
+..|......+++.+|++++|+|+.+...... ..++..+.. .++|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99998888889999999999999887543332 234444433 368999999999986
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=130.04 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER----------FHAL 80 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~ 80 (223)
+..+..+|+++|++|+|||||+++|.+..+.....++.|.......+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 346678999999999999999999987654333344444443333333333 467899999742 2222
Q ss_pred ccccc---ccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhC--
Q psy8722 81 GPIYY---RMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVG-- 151 (223)
Q Consensus 81 ~~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~-- 151 (223)
...++ ..++++++++|+.++.+.. .+..|+. . .+.|+++++||+|+....+ ...+.+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 22333 4689999999998865443 2233332 1 3579999999999754321 11234444554444
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+.++.+|++++.|++++++.|.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 467889999999999999998876543
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=146.68 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=85.2
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhhC--CCC------CC----------CccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVED--KFN------EK----------HITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
..+..+..+|+|+|+.|+|||||+++|+.. .+. .. .....+.......+.+++ +.+.|||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 344577899999999999999999999831 110 00 011122222223334444 6789999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+..|...+..+++.+|++|+|+|+++..++.....|..... .++|+++++||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----cCCCEEEEEECCCccc
Confidence 99999998888889999999999999999877766666654332 3689999999999853
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=129.44 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=83.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPI-------- 83 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 83 (223)
...++|+++|.+|+|||||+|+|.+..+. ....++.+.......+..++ ..+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45899999999999999999999976652 22223333333333344444 67899999998766533221
Q ss_pred -ccccCCEEEEEEECCCHHHHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCcccccc
Q psy8722 84 -YYRMSNGAVLVYDITDEDSFEK-VKNWVKELKKMLGND--ICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~ 137 (223)
....+|++++|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 13479999999998763 2433 236777777665433 69999999999865443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=138.45 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=108.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---cccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF----HALGPIY---YRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d 89 (223)
.|+|+|++|||||||++++.+........+..+.......+..++ ...+.+||+||.... ..+...+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999986533222222222222233344443 245789999996432 2222222 34689
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
.+++++|++ ..++..+..|...+..... ...|.++++||+|+... ...+...+.+...+.+++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5667777777766655421 24688999999998654 223445555566678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEK 179 (223)
Q Consensus 168 ~~~~i~~~~~~~ 179 (223)
++++|.+.+.+.
T Consensus 315 L~~~i~~~l~~~ 326 (416)
T 1udx_A 315 LKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=138.30 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=110.0
Q ss_pred HHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHH-HHHHHH
Q psy8722 30 SVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDED-SFEKVK 107 (223)
Q Consensus 30 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (223)
+|++++..+.|. ..+.+|+|..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 578888888888 788899995553 3322222 6899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC--CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 108 NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
.|+..+.. .++|+++|+||+|+...+.+ ++..+++..++ .+++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99988765 36899999999999654432 45677777777 89999999999999999988754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-18 Score=142.59 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEE-----------------------------------------
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLN----------------------------------------- 54 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 54 (223)
.+|+|+|++|||||||+|+|++..+.+....+.+.....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 399999999999999999999877633322222110000
Q ss_pred -----------EEEEE-CCeEEEEEEEeCCCcccc-------------ccccccccccCCEEEEEEECCCHHHHHHHHHH
Q psy8722 55 -----------KKLNI-AGKRLNLAIWDTAGQERF-------------HALGPIYYRMSNGAVLVYDITDEDSFEKVKNW 109 (223)
Q Consensus 55 -----------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 109 (223)
..+.+ ......+.+|||||...+ ......++.++|++|+|+|..+..... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 00000 011135889999997765 445567889999999999876533221 345
Q ss_pred HHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 110 VKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 110 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+..+......+.|+++|+||+|+........+....+...++.+|+.+++..+.++++.+..+
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 555665555678999999999987655555555555555667789999999888877665543
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=144.90 Aligned_cols=166 Identities=12% Similarity=0.133 Sum_probs=108.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccce--------------eE-------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQA--------------SF------------------------- 52 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~--------------~~------------------------- 52 (223)
...++|+|+|.+|+|||||+|+|++.... ....+++.. .+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35789999999999999999999976643 333333310 00
Q ss_pred --------------EEEEEEECCeE--EEEEEEeCCCccc---cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHH
Q psy8722 53 --------------LNKKLNIAGKR--LNLAIWDTAGQER---FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKEL 113 (223)
Q Consensus 53 --------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 113 (223)
....+..+... ..+.||||||... .......++.++|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00001111000 2488999999654 2344567789999999999999887777666565444
Q ss_pred HHHcCCCCeEEEEEeCCCccccccCCHH----------HHHH-----HHHH--------hCCcEEEecCC----------
Q psy8722 114 KKMLGNDICLTIAGNKIDLEKQRTVMQE----------DAEK-----YAQS--------VGAVHFHTSAK---------- 160 (223)
Q Consensus 114 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~---------- 160 (223)
.. .+.|+++|+||+|+.....+..+ .+.+ +... ...+++.+||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 35789999999998544311111 1111 1111 12368999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHH
Q psy8722 161 ----MNRGIEEMFLELSQRMLEKAQ 181 (223)
Q Consensus 161 ----~~~~i~~~~~~i~~~~~~~~~ 181 (223)
++.|++++++.|.+.+...+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999988765443
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=139.19 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=78.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCC--------------------Ccccccee--EEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK--------------------HITTLQAS--FLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~--~~~~~~~~~~~~~~~~i~D 70 (223)
.+.++|+++|++|+|||||+++|+....... ...+.+.+ .....+..++ +.+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 5678999999999999999999985311000 00111111 1122233444 6788999
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+..|......++..+|++|+|+|+.+..... ...++ ......++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~---~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLM---EVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHH---HHHTTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHH---HHHHHcCCCEEEEEcCcCCcc
Confidence 9999999888888999999999999998853221 12222 222334789999999999854
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=139.51 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=85.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC-CCCCCCc--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED-KFNEKHI--------TTLQASFLNKKLNIAGKRLNLAIWDTAGQ-------ER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 76 (223)
.-.++|+|+|++|+|||||+++|.+. .++.... ++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998754 4443321 12222221222223344568999999997 44
Q ss_pred cccccc-------ccccc-------------CCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 77 FHALGP-------IYYRM-------------SNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 77 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
+..... .+++. ++++++..+.+. .+++.+. ...+... ....++++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 444333 33322 234555554322 1222222 1223333 2457999999999986543
Q ss_pred cC--CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 137 TV--MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
++ ..+++.+++..++++++++||+++ +++++|..+.+.+..
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 32 245778888999999999999999 999999999888753
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=140.25 Aligned_cols=121 Identities=16% Similarity=0.064 Sum_probs=84.3
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhC--CCCCC------C----------ccccceeEEEEEEEEC-----CeEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVED--KFNEK------H----------ITTLQASFLNKKLNIA-----GKRLNL 66 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------~----------~~~~~~~~~~~~~~~~-----~~~~~~ 66 (223)
.+.++..||+|+|+.|+|||||+++|+.. .+... . ...++.......+.++ +..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 34567889999999999999999999742 11110 0 1111222222223332 234789
Q ss_pred EEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.||||||+.+|...+..+++.+|++|+|+|+++.........|... . ..++|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H---HcCCCEEEEEeCCCccc
Confidence 9999999999988888899999999999999987655544444332 2 23689999999999743
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-18 Score=143.95 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=47.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKK--L-------------------NIAG-KRLNLAIWDTAG 73 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 73 (223)
++|+++|.+|||||||+|+|++........+.++.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999966543333333332221111 1 1222 246899999999
Q ss_pred ccc----cccccc---cccccCCEEEEEEECCCH
Q psy8722 74 QER----FHALGP---IYYRMSNGAVLVYDITDE 100 (223)
Q Consensus 74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 100 (223)
... ...+.. .+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 456899999999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=138.56 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=83.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCC-------ccccceeEEEEEEEECCeEEEEEEEeCCCccccc------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKH-------ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------ 78 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 78 (223)
.-.++|+|+|++|+|||||++.|.+..+. ... .++.+.......+...+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44678999999999999999999976553 211 1222222222222223333578999999965431
Q ss_pred -c------------------ccccccccCCEEEEEEECCCH-HHHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 79 -A------------------LGPIYYRMSNGAVLVYDITDE-DSFEKVK-NWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 79 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
. ....++.++++.+++|..... .++.... .|+..+. .++|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 1 123355666655555555432 2343333 4555553 3689999999999865544
Q ss_pred CCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 138 VMQ--EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+.. +.+.+.+..+++++|++|++++.++.++|..+...
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 433 56777888889999999999999999877666553
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=140.51 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCCC-----------C-----ccccceeEEEEEEEECCeEEEEEEEeCC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNEK-----------H-----ITTLQASFLNKKLNIAGKRLNLAIWDTA 72 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (223)
+..+..+|+++|++|+|||||+++|+. ..+... + ...++.......+.+++ +.+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 456789999999999999999999984 222100 0 11122222223344454 678999999
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|+..+......+++.+|++|+|+|+.+..+......|.. +.. .++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998888889999999999999998776666555544 332 3689999999999853
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=130.92 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=67.9
Q ss_pred EEEEEEeCCCccc-------------cccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q psy8722 64 LNLAIWDTAGQER-------------FHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNK 129 (223)
Q Consensus 64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 129 (223)
..+.||||||... +......++..+|++++|+|..+.. .... +...+......+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~---~~~i~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD---ALQLAKEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS---HHHHHHHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH---HHHHHHHhCCCCCcEEEEEcC
Confidence 4689999999653 3344566788999999999974322 1111 111222223347899999999
Q ss_pred CCccccccCCHHHHHHHHHHhCCcEEEecCC---C---CCCHHHHHHHHHHHHHH
Q psy8722 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK---M---NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~i~~~~~~ 178 (223)
+|+........+.........+..++.+++. + +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9986544322222221111122456666554 4 78899998888776654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=130.82 Aligned_cols=116 Identities=13% Similarity=0.027 Sum_probs=82.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC----------------------CCCCccccceeEEEEEEEECCeEEEEEEEe
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF----------------------NEKHITTLQASFLNKKLNIAGKRLNLAIWD 70 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (223)
.+.-||+|+|+.++|||||..+|+...- ..+...+++.......+.+++ +.+.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 4567999999999999999999862110 112223333333444556666 5677789
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
|||+.+|.......++-+|++|+|+|+.+.-......-|..... .++|.++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchh
Confidence 99999999999999999999999999998655554444544433 3789999999999743
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=119.85 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=95.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcccccee--------------EEEEEEEE----------------CCeE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--------------FLNKKLNI----------------AGKR 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 63 (223)
+..+|+++|.+|+|||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998542211111111000 00011111 0112
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.+|||+|+.... ..+....+.+++|+|+.+... ....+... . +.|+++++||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 467899999851110 011135688999999876532 11111111 1 368899999999865433456666
Q ss_pred HHHHHHhC--CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 144 EKYAQSVG--AVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 144 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
.+.+...+ .+++++||++|.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 66666553 6899999999999999999999877554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=120.83 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=91.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERFH- 78 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 78 (223)
.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+++. ...+.+|||||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999976654433343333322233444442 1468999999987653
Q ss_pred ---ccccc---ccccCCEEEEEEECCCH----------HHHHHHHHHHHHH-----------------------------
Q psy8722 79 ---ALGPI---YYRMSNGAVLVYDITDE----------DSFEKVKNWVKEL----------------------------- 113 (223)
Q Consensus 79 ---~~~~~---~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 113 (223)
.+... +++.+|++++|+|+++. +++..+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 23222 46899999999999862 2333332211111
Q ss_pred -----------HH-------------------H-cCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC
Q psy8722 114 -----------KK-------------------M-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 114 -----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
.. . ....+|+++++|+.|.........+.+.+++...+.+++.+||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 012489999999998643222345677788888899999999653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-18 Score=132.66 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=93.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEE------------EEEEEEC-CeE-----------------
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFL------------NKKLNIA-GKR----------------- 63 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 63 (223)
+.++|+|+|.+|||||||+++|....+...+.++.+.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999966554444444443332 1111121 111
Q ss_pred --EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHH
Q psy8722 64 --LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 64 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
..+.++|++|.-... ..+-...+..+.++|......... ..... . ..|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 134455665521100 011122344566777532111000 00011 1 3688999999998665445667
Q ss_pred HHHHHHHHh--CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQSV--GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
+..+++... +.+++++||++|.|++++|++|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777777665 5689999999999999999999887653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=135.58 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCC--CCC--------------CCcc--ccceeEEEEEEE------------ECC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDK--FNE--------------KHIT--TLQASFLNKKLN------------IAG 61 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~--------------~~~~--~~~~~~~~~~~~------------~~~ 61 (223)
..+..||+|+|+.++|||||+++|+... ... +... |+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998431 110 0111 221222222222 234
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..++.....|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 46889999999999999999999999999999999999877777666655432 368999999999985
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=130.85 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=93.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCC------cccc----------------------cee-------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH------ITTL----------------------QAS------------- 51 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~~~------------- 51 (223)
....+|+|+|.+|||||||+|+|++..+.+.. .++. +.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999987763221 1220 000
Q ss_pred --------EEEEEEEEC-CeEEEEEEEeCCCccc-------------cccccccccccCCEE-EEEEECCCHHHHHHHHH
Q psy8722 52 --------FLNKKLNIA-GKRLNLAIWDTAGQER-------------FHALGPIYYRMSNGA-VLVYDITDEDSFEKVKN 108 (223)
Q Consensus 52 --------~~~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~ 108 (223)
.....+.+. .....+.||||||... +..+...|+.+++.+ ++|.|++....-. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 000001110 1124689999999532 333455566666544 5566665432211 2
Q ss_pred HHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH--HHHhC-CcEEEecCCCCCCHHHHHHHHHH
Q psy8722 109 WVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY--AQSVG-AVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|...+......+.|+++|+||+|+........+..... ....+ .+++.+||+++.|++++++.+..
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33334444455789999999999865433222211100 00122 24678999999999999988876
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-16 Score=125.98 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=69.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.||||||... ........+|++++|+|....+....+..+ + ...|+++|+||+|+...... ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHH-HHHH
Confidence 5788999999432 122345889999999998765433222210 0 13689999999998543221 1112
Q ss_pred HHHHHH---h-------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 144 EKYAQS---V-------GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 144 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.++... . +.+++.+||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221 2 5789999999999999999999988765
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=117.96 Aligned_cols=156 Identities=17% Similarity=0.089 Sum_probs=94.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG-------------------KRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 76 (223)
++|+++|.+|+|||||+|+|++........+..+.+.......+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999995443222222222211111222221 224689999999775
Q ss_pred ccc----ccc---cccccCCEEEEEEECCCH----------HHHHHHHHHHHHH--------------------------
Q psy8722 77 FHA----LGP---IYYRMSNGAVLVYDITDE----------DSFEKVKNWVKEL-------------------------- 113 (223)
Q Consensus 77 ~~~----~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 113 (223)
... +.. ..++.+|++++|+|+.+. +.+..+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 432 222 246899999999999862 1222221111101
Q ss_pred ---------HHHc------------------------CCCCeEEEEEeCCCcc--cc-ccCCHHHHHHHHHHhCCcEEEe
Q psy8722 114 ---------KKML------------------------GNDICLTIAGNKIDLE--KQ-RTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 114 ---------~~~~------------------------~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.... -..+|+++++||.|.. +. +....+.+.+++...+.+++.+
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0000 0137999999999843 21 1234577888888889999999
Q ss_pred cCCCCCCHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLE 171 (223)
Q Consensus 158 Sa~~~~~i~~~~~~ 171 (223)
||+...++.++...
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987666655544
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-15 Score=127.62 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=80.2
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCC---CCCccccceeEEEEE-------------------------------
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN---EKHITTLQASFLNKK------------------------------- 56 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~------------------------------- 56 (223)
......+|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456789999999999999999999987663 333333321110000
Q ss_pred -----EEECCeE-EEEEEEeCCCccc-----------cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCC
Q psy8722 57 -----LNIAGKR-LNLAIWDTAGQER-----------FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN 119 (223)
Q Consensus 57 -----~~~~~~~-~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 119 (223)
..+++.. ..+.||||||... +......++..+|++|+|+|+++.........|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000000 2478999999764 334445567889999999999875444455556555433 3
Q ss_pred CCeEEEEEeCCCcccc
Q psy8722 120 DICLTIAGNKIDLEKQ 135 (223)
Q Consensus 120 ~~p~ivv~nK~Dl~~~ 135 (223)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5799999999998643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-15 Score=120.10 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.++||+|.... .......+|.+++|+|+..+.....+.. ... ..|.++++||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~il--~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GII--EMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HHH--hcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999995321 1234578999999999987543222211 111 3578999999998532110 1112
Q ss_pred HHHHH----------HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 144 EKYAQ----------SVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 144 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.++.. .++.+++.+||+++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22221 124578999999999999999999887643
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=120.76 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCC--------CC----------CCCccccceeEEEEEEEECC-----eEEEE
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDK--------FN----------EKHITTLQASFLNKKLNIAG-----KRLNL 66 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~ 66 (223)
.+-++--||+|+|+.++|||||..+|+... .. .+....++.......+.+.+ ..+.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 344667799999999999999999986211 10 01122233333333333432 35788
Q ss_pred EEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 67 AIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.|+|||||.+|.......++-+|++|+|+|+.+.-......-|.+.... ++|.++++||+|.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr 149 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDR 149 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccc
Confidence 8999999999999999999999999999999986554444445555544 6899999999996
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-15 Score=128.98 Aligned_cols=112 Identities=19% Similarity=0.120 Sum_probs=79.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh--hCCCCCC----------------CccccceeEEEEEEEECCeEEEEEEEeCCCcccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV--EDKFNEK----------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF 77 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~--~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (223)
.||+|+|+.++|||||..+|+ .+..... ...+++.......+.+++ ..+.|+|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 489999999999999999986 2222110 001222222223334445 56778899999999
Q ss_pred ccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 78 HALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.......++-+|++|+|+|+.+.-..+...-|...... ++|.++++||+|..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEeccccc
Confidence 99999999999999999999986444443445444443 68999999999963
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=108.91 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=91.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----c---ccccccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----L---GPIYYRM 87 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 87 (223)
..+|+++|.||||||||+|+|++........++++.+.....+.+++ ..++++||||...... . .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999997666556667788888788888888 4577889999542211 1 1223578
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccc--------cccCCHHHHHHHHHHhCC
Q psy8722 88 SNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEK--------QRTVMQEDAEKYAQSVGA 152 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~ 152 (223)
+|++++|+|++++.. .......++.... -...|.++++||.|... ......++.+.+...+.+
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 999999999998743 2222223333321 13467888999999632 123456667777666665
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=104.84 Aligned_cols=110 Identities=19% Similarity=0.070 Sum_probs=67.5
Q ss_pred EEEEEEeCCCccccccccc------cccccCCEEEEEEECCCH---HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQERFHALGP------IYYRMSNGAVLVYDITDE---DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
+.+.||||||......... ..+.. +++++++|.... ..+.....+.. ......+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence 4689999999765433221 13455 888889987543 22222211111 111123579999999999854
Q ss_pred cccCCHHHHHH----------------------------HHHHhC--CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 135 QRTVMQEDAEK----------------------------YAQSVG--AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.... ++..+ ++..++ .+++++||+++.|+++++++|.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3321 11111 123333 479999999999999999999877643
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-14 Score=114.82 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=64.6
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCH--H
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQ--E 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 141 (223)
+.+.||||||...... .....+|++++|+|.........+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999654332 24588999999999976543211111 11 1358899999999854321110 1
Q ss_pred HHHHHHHHh-------CCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQSV-------GAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 142 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
+..+..... ..+++.+||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222222 356889999999999999999998765
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=105.83 Aligned_cols=97 Identities=21% Similarity=0.119 Sum_probs=80.2
Q ss_pred ccccccccccccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC-HHHHHHHHHHhC
Q psy8722 74 QERFHALGPIYYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-QEDAEKYAQSVG 151 (223)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 151 (223)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.....+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6777888888999999999999999986 88888999987765 368999999999986543222 345566677788
Q ss_pred CcEEEecCCCCCCHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
++++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-14 Score=123.59 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccce-----------------------------------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQA----------------------------------------- 50 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~----------------------------------------- 50 (223)
....+|+|+|.+++|||||+|+|++..+ +.....++..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3456999999999999999999998765 2221111100
Q ss_pred ---------eEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-ccCCEEEEEEECCCHHHHHHHH
Q psy8722 51 ---------SFLNKKLNIAGKRLNLAIWDTAGQER-------------FHALGPIYY-RMSNGAVLVYDITDEDSFEKVK 107 (223)
Q Consensus 51 ---------~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 107 (223)
+.....+...+ ...+.|+||||-.. +......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00111111111 12477899999443 112223333 5789999999998753322221
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH----hC-CcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 108 NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS----VG-AVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+ +......+.|+++|+||+|+......... ..+ ... .+ .+++.+||+++.|++++++.+.+.
T Consensus 208 ~l---l~~L~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KI---AKEVDPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HH---HHHHCTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HH---HHHHHhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 22 23333457899999999998654433221 111 001 12 246779999999999999988864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-13 Score=106.75 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=62.1
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA 143 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 143 (223)
+.+.|+||+|..... ......+|.+++++|.........+..+ +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 568889999964321 1234789999999998654322111111 11 135577789999643222111222
Q ss_pred HHHHHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 144 EKYAQS----------VGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 144 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
.++... +..+++.+|+.++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233221 1357889999999999999999988654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-12 Score=106.65 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=52.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQERF 77 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 77 (223)
...++|+++|.+|+|||||+|+|++........++++.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 55789999999999999999999977665555555555544445544432 135899999997754
Q ss_pred cc-------ccccccccCCEEEEEEECCCHHH
Q psy8722 78 HA-------LGPIYYRMSNGAVLVYDITDEDS 102 (223)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 102 (223)
.. ....+++.+|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 23456789999999999986544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-11 Score=97.72 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=61.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCe-------------E--EEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGK-------------R--LNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~i~D~~G~~~ 76 (223)
.+..+|+++|++|||||||+|.|++... .....++++.+.....+.+.+. . ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999997665 5555565555554555555541 1 3578999999543
Q ss_pred ccc-------ccccccccCCEEEEEEECCC
Q psy8722 77 FHA-------LGPIYYRMSNGAVLVYDITD 99 (223)
Q Consensus 77 ~~~-------~~~~~~~~~d~~i~v~d~~~ 99 (223)
..+ .....++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 221 22334578999999999864
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=92.33 Aligned_cols=103 Identities=8% Similarity=-0.085 Sum_probs=67.5
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEEeCC-CccccccCCHHHHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-----GNDICLTIAGNKI-DLEKQRTVMQEDAEKY 146 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 146 (223)
|++..+.+|..||.++|++|||+|.+|.+-++ ...-+..+.... ..+.|++|++||. |+. ...+..++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence 78889999999999999999999999875433 222222222221 1468999999985 664 34455555544
Q ss_pred HHHh----CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 147 AQSV----GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 147 ~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.... ...+..|||++|+|+.+.++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3222 2246779999999999999999877643
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=91.01 Aligned_cols=107 Identities=8% Similarity=-0.094 Sum_probs=72.8
Q ss_pred CCCccccccccccccccCCEEEEEEECCCHHHHH---HHHHHHHHHHHH-cCCCCeEEEEEeC-CCccccccCCHHHHHH
Q psy8722 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE---KVKNWVKELKKM-LGNDICLTIAGNK-IDLEKQRTVMQEDAEK 145 (223)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 145 (223)
.+|++..+.+|..|+.++|++|||+|.+|.+-++ .+.++...+... ...+.|++|++|| .|+.. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3578889999999999999999999999976433 222222233222 1247899999996 57743 345555544
Q ss_pred HHHHh----CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 146 YAQSV----GAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 146 ~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
..... ...+..|||.+|+|+.+.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 43221 12367799999999999999999877543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-10 Score=94.27 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=77.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC------CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----c---
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED------KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----G--- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~--- 81 (223)
..+|+++|.+|+|||||+|+|.+. .......++++.+. ..+.+... +.++||||-...... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999854 33333334444333 23333332 678899994322211 1
Q ss_pred -cccc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEec
Q psy8722 82 -PIYY--RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 82 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (223)
..++ ...+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 1111 56789999999843211111110 11122346899999999997543322 2333445555665544444
Q ss_pred CCC
Q psy8722 159 AKM 161 (223)
Q Consensus 159 a~~ 161 (223)
+..
T Consensus 312 ~~~ 314 (369)
T 3ec1_A 312 KRY 314 (369)
T ss_dssp GGG
T ss_pred chh
Confidence 443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=86.54 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=73.7
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHH----HHHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDA----EKYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~ 148 (223)
..+.|.+....+++.++++++|+|+.++. ..|...+.+... +.|+++|+||+|+.... ...+.. .+++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35678888888999999999999999863 456666766654 68999999999985432 233333 33466
Q ss_pred HhCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 149 SVGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 149 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
..++ +++.+||+++.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6777 78999999999999999888654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.4e-09 Score=86.09 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=57.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC----ccccceeEEEEEEEECCeEEEEEEEeCCCccccc-------------
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKH----ITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH------------- 78 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 78 (223)
++++|+|++|+|||||++.|.+..+.... .+..............+-...+.++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999866432211 1111111111111212222367888998843210
Q ss_pred -----ccccc---------ccccC--CE-EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 79 -----ALGPI---------YYRMS--NG-AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 79 -----~~~~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
..... ....+ |+ ++++.|....-+...+ ..+.. ...+.|+|+|+||+|.-
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~-L~~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKK-LDSKVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHH-TCSCSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHH-HhhCCCEEEEEcchhcc
Confidence 00001 11222 33 5556666543332221 22222 23578999999999964
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=79.88 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=68.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCC--------c-cccceeEEEEEEEECCeE--EEEEEEeCCCcccccc----
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKH--------I-TTLQASFLNKKLNIAGKR--LNLAIWDTAGQERFHA---- 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~---- 79 (223)
.++++++|+.|+|||||+|.|.+...+... . .+.... ...+..+... ..+.++|++|-.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~--~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIK--AIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCC--EEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeee--eeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 589999999999999999999853332211 0 011111 1111122222 2578889998321100
Q ss_pred --cc----------------------ccccccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc
Q psy8722 80 --LG----------------------PIYYRMSNGAVLVYDITD-EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134 (223)
Q Consensus 80 --~~----------------------~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 134 (223)
.. ...+..+++.++++|... +-.... ...+..+ ... +++++|++|.|.-.
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCC
Confidence 00 011233688888898542 211111 1222223 223 89999999999643
Q ss_pred cccC--CHHHHHHHHHHhCCcEEE
Q psy8722 135 QRTV--MQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~ 156 (223)
..+. ....+.+.....++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 3221 123344445566776654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.4e-09 Score=88.07 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=83.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh------hCCCC----CCCcccc-----------ceeEEEEEEE-------------
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV------EDKFN----EKHITTL-----------QASFLNKKLN------------- 58 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 58 (223)
.+...|+++|.+|+||||+++.|. +.... ..+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999997 22110 0000100 1111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cc---ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEeCCC
Q psy8722 59 IAGKRLNLAIWDTAGQERFHA-LG---PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICL-TIAGNKID 131 (223)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 131 (223)
.....+.+.|+||||...... .. ... ...+|.+++|+|+...... ......+... .|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeCCc
Confidence 000225688999999653221 11 111 2278999999999875321 1112223322 464 88899999
Q ss_pred ccccccCCHHHHHHHHHHhCCcE------------------EEecCCCCCC-HHHHHHHHHHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVH------------------FHTSAKMNRG-IEEMFLELSQR 175 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~ 175 (223)
...... .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 753221 1222334455543 2368888888 88888887654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=77.99 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=84.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCcccc-ceeEEE-EEEEECCeEEEEEEEeCCCcccccccccc-----cccc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTL-QASFLN-KKLNIAGKRLNLAIWDTAGQERFHALGPI-----YYRM 87 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~ 87 (223)
...++|+|++|+|||||+|.+.+...+..-.-.. +.+... ..+.-......+.+||++|.......... -+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4489999999999999999998643322211111 111000 11111111114678999984321111111 1233
Q ss_pred CCEEEEEEECC--CHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc-------ccccCCHHHH----HHHH----HHh
Q psy8722 88 SNGAVLVYDIT--DEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE-------KQRTVMQEDA----EKYA----QSV 150 (223)
Q Consensus 88 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~ 150 (223)
.+..++ ++.. ...-. .+...+.. .+.|+++|.||.|+- .-.....+++ .++. ...
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554 7765 22211 11122222 357999999999962 1122233333 3332 122
Q ss_pred C---CcEEEecC--CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8722 151 G---AVHFHTSA--KMNRGIEEMFLELSQRMLEKAQEF 183 (223)
Q Consensus 151 ~---~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~~~~ 183 (223)
+ ...+.+|+ ..+.|++++.+.+.+.+.+....+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 2 25678898 556679999999988775555443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-10 Score=90.60 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=71.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC-------CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc----c--
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFN-------EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL----G-- 81 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~-- 81 (223)
..+|+++|.+|+|||||+|+|.+.... ....+.++.+. ..+.+... +.++||||-...... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 358999999999999999999854211 12223333222 22333332 678899995332211 1
Q ss_pred --ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEE
Q psy8722 82 --PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHF 155 (223)
Q Consensus 82 --~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (223)
..+ ....+..+++++......+..+.. +......+.|+++++||.|...... .......+.+..|..++
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~ 307 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLS 307 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBC
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccC
Confidence 111 256788888888743211111100 1112234689999999999754432 23333444455554433
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=83.76 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=71.7
Q ss_pred CccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHH----HHHH
Q psy8722 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE----KYAQ 148 (223)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~ 148 (223)
.++.|.+....++..++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.... ...+... +++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 477888888888899999999999999763 45555555543 68999999999985432 2233333 3456
Q ss_pred HhCC---cEEEecCCCCCCHHHHHHHHHHH
Q psy8722 149 SVGA---VHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 149 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
..|. .++.+||+++.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 6676 68999999999999999888654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-08 Score=77.80 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=71.0
Q ss_pred eCCCcc-ccccccccccccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHH
Q psy8722 70 DTAGQE-RFHALGPIYYRMSNGAVLVYDITDEDSFE--KVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKY 146 (223)
Q Consensus 70 D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 146 (223)
..|||. +........+.++|+++.|+|+.++.+.. .+.+|+ .++|.++|+||+|+..... .+...++
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 688876 44455566789999999999999987654 344333 3689999999999865321 2333445
Q ss_pred HHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 147 AQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
....+++++.+||.++.|+.++++.+.+.+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 555678999999999999999999887776544
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=74.86 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
...++|+++|.+|+|||||+|+|.+.. ......++++.+.. .+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999654 33343444443332 222332 47789999954
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=73.92 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=34.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
++++++|.+|+|||||+|+|.+.... ....++.+... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999965542 22223222222 2222222 478999999653
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=9.2e-07 Score=76.21 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.+.++|+|+|.+|+|||||+|+|.+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 567899999999999999999999665
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=70.44 Aligned_cols=86 Identities=20% Similarity=0.082 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccccccc----c--cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHALG----P--IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|........ . .....+|.+++|+|+...... ......+... -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCccc--
Confidence 568889999944322111 1 112357899999998864332 2222333332 2355688999997432
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.-.+..+....+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23345556678888877765
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-07 Score=69.40 Aligned_cols=94 Identities=16% Similarity=0.024 Sum_probs=62.2
Q ss_pred CCCccc-cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH
Q psy8722 71 TAGQER-FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS 149 (223)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (223)
.|||.. ........+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+..... .+...++...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 577653 2344566778999999999999986653211 11 11 589999999999865321 2333445556
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 150 VGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.+.++ .+||.++.|+.++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 68888 99999999999988776543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=66.65 Aligned_cols=83 Identities=20% Similarity=0.070 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccccc-cc-----ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC-e-EEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQERFHA-LG-----PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI-C-LTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~~ 135 (223)
+.+.|+||||...... .. ......+|.+++|+|+..... .......+. ... | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 5678889999553211 11 111236899999999876431 111122222 234 5 7889999997422
Q ss_pred ccCCHHHHHHHHHHhCCcEEEe
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
......+....+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 123344666677776554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-06 Score=66.91 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=60.1
Q ss_pred cccccccccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc--CCHHHHHHHHHHhCCcEE
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDS-FEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT--VMQEDAEKYAQSVGAVHF 155 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 155 (223)
.+......++|.+++|+|+.++.. ...+.+++...+. .++|.++|+||+|+..... ...+...+.....|.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 334456789999999999997653 3344554444333 3689999999999965432 012344455556788999
Q ss_pred EecCCCCCCHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFL 170 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~ 170 (223)
.+|+.++.|+++++.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999988887765543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=68.89 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN 41 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~ 41 (223)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 3999999999999999999876433
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=62.13 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccc
Q psy8722 64 LNLAIWDTAGQER--FHA-LGP-----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEK 134 (223)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 134 (223)
+.+.|+||||... ... ... .....+|.+++|+|..... ........+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5688899999665 211 111 1234689999999986432 12222222322 245 678899999642
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
....+..+....+.|+..++ .|++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 23345567778888887766 355554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=66.81 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccc--ccc-cc---cc--ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQER--FHA-LG---PI--YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
+.+.|+||||... ... .. .. .....+.+++|+|+...... ......+.... .+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEecccccc-
Confidence 5677889999543 111 11 11 11246899999999865332 22223344332 35678999999642
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
..-.+.......+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 234455666678999877775 5544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-05 Score=60.28 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=56.9
Q ss_pred ccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC-CHHHHHHHHHHhCCcEEEecCCC
Q psy8722 84 YYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV-MQEDAEKYAQSVGAVHFHTSAKM 161 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 161 (223)
...++|.+++|.+.. +. +...+..++...... ++|.++|+||+|+...... ..+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468899999887654 54 344455565554443 5788999999998654210 01223334456788999999999
Q ss_pred CCCHHHHHHH
Q psy8722 162 NRGIEEMFLE 171 (223)
Q Consensus 162 ~~~i~~~~~~ 171 (223)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999887654
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-06 Score=74.23 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=62.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER--FHALG--------P 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 82 (223)
...++|+++|.+|+||||+.++|...... ....+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998743211 1111111100000000111112346789988732 22222 4
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (223)
.++...++.++|+|.++. +......|+..+... +.+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 455567888999999987 456666777776654 34555444
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.8e-05 Score=63.48 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=22.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+-.-|+|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34667799999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=53.40 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999874
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
--++|+|++|||||||++.|..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999974
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999874
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00032 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=52.15 Aligned_cols=22 Identities=45% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=-++|+|++|||||||++.+.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999874
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00037 Score=52.61 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998843
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00038 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|+|++|+|||||++.+.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999885
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.--|+|+|++|+|||||++.|..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 444688999999999999999984
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00025 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-.++|+|++|+|||||+|.|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 347899999999999999999753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00043 Score=50.84 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+|||||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.|+|+|++|||||||++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=49.92 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0045 Score=51.53 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcccccc-ccc-----cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccc
Q psy8722 64 LNLAIWDTAGQERFHA-LGP-----IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQR 136 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~ 136 (223)
+.+.|+||||...... ... .....++.+++|+|+..... .......+... .+ ..+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence 5688889999543321 111 11346889999999875432 22222233322 33 34688999964322
Q ss_pred cCCHHHHHHHHHHhCCcEEE
Q psy8722 137 TVMQEDAEKYAQSVGAVHFH 156 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (223)
..+..+....+.|+..
T Consensus 257 ----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKF 272 (433)
T ss_dssp ----THHHHHHHHHCCCEEE
T ss_pred ----HHHHHHHHHHCCCeEE
Confidence 2333555566765433
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0004 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00049 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+...|+|+|++|+|||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00051 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--|+|+|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999854
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0006 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998543
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00054 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999988753
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00068 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00072 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-|+|+|++|||||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00076 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|++|+||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00079 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+|+|+.|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998874
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00068 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0008 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00079 Score=49.79 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
...|+|+|++||||||+++.|....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478999999999999999987543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00089 Score=47.89 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=18.5
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q psy8722 16 FKVVLLGEGCVGKTSVVLRY 35 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l 35 (223)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00091 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00091 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+|.|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00088 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999998543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00084 Score=52.07 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00086 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988753
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0013 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.....+...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444555677899999999999999998863
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00094 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00092 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00096 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+|+|++|+|||||++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00091 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999999874
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00099 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
....+.|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00094 Score=51.63 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=50.80 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=47.97 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=50.97 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0014 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+|+|++|+||||+.+.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=51.47 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.=.++|+|++|+|||||++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 33689999999999999999874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=52.35 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999999874
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+...|+|+|++||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999886
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.|+++|++|+||||+.+.|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999886
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=48.96 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|+|+|||||+|....|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998876
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=51.21 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68899999999999999998543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=52.20 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=47.53 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-++++|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=48.13 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998863
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998854
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0021 Score=51.17 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+..-|+|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=50.68 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
|
| >3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=49.34 Aligned_cols=135 Identities=8% Similarity=0.009 Sum_probs=64.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEE-eCCC-ccccc----c-cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW-DTAG-QERFH----A-LGPIYY 85 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~~G-~~~~~----~-~~~~~~ 85 (223)
.+.+=|++-|+++.||++|++++.+..... .. ......+..+.....+-|| |.-. ...+. + ......
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~~~~---~~---i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCSSTG---IS---IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCCCCS---SC---EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred CCceEEEecCcccccHHHHHHHHhcccccc---cc---cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence 444445555999999999999998652211 11 1223334555666667666 5433 11111 1 111112
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEe
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHT 157 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
.-..++|+||+...+...+.+.. ..........+++|+.-.+.........++....+..+|+.|+..
T Consensus 101 ~viggII~~f~~p~~~~~~~i~~----~~~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~ 168 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLHQ----FMIAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNW 168 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHHH----HHHHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEEC
T ss_pred HhcceEEEEEeCCCcchHHHHHH----HhccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEe
Confidence 23478999998655444333332 222233344455554333221110001122222233456777764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00084 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=15.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh-hC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV-ED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~-~~ 38 (223)
--|+|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998 54
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=50.91 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+.++|+|.|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999986
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0021 Score=47.65 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+...|+|+|++|+||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999998753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+..+|+|+|++|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=47.05 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.+|+++|++|+||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0017 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0055 Score=51.01 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh---h---------------CCCCCC---CccccceeEEEEEEEE---CCeEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV---E---------------DKFNEK---HITTLQASFLNKKLNI---AGKRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~---~---------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~ 67 (223)
..+-.-|.|+|+.++|||+|+|.|+ . ..|... ...|.|.-.....+.+ ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 3566778899999999999999654 1 222221 1223333322222211 56678899
Q ss_pred EEeCCCccc
Q psy8722 68 IWDTAGQER 76 (223)
Q Consensus 68 i~D~~G~~~ 76 (223)
+.||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++|+|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=47.47 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.-.|+|+|++|+||||+.+.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|+.|+|||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.002 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987654
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0032 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999987753
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...+..-|+|.|++||||||+.+.|..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=52.05 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++|+|+.|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.001 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|+|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0023 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0026 Score=50.73 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
....+-|+|+|++|||||||++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999999886
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0023 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0025 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0021 Score=46.36 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|+|++|+||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999885
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.003 Score=49.66 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+...|+|+|++|+|||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999998875
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0022 Score=52.00 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999988754
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.......|+++|++|+||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999863
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0027 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+++|++|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999886
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0027 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999988754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=51.65 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=47.87 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+.|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999987643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0027 Score=46.67 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999875
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0037 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+...|+|.|++|+||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999886
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999998754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0026 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=45.45 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0032 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|+.|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998874
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=50.30 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred EEEEEeCCCcccccc-cc-----------ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 65 NLAIWDTAGQERFHA-LG-----------PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~-~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
.+.+.|++|...... .. .......+.++++.|...... +...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc--C-CcEEEEECCcc
Confidence 356779999532211 00 112345777888999876543 222223333322 2 34577899885
Q ss_pred cccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 133 EKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.... -.+.......+.|+.++..
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEEC
T ss_pred cccc----cHHHHHHHHHCCCeEEEeC
Confidence 3221 2234556677888776653
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0029 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0036 Score=46.26 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|+|++|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0028 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999998754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0028 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.003 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.002 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++++|++|+|||+|++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999874
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0035 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..+..-|+|.|+.|+|||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355678999999999999999988753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
....+|+|+|++|+||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0032 Score=51.39 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
=.|+|+|++|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999874
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=49.88 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--++++|+.|+||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 44578999999999999999875
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0037 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.004 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999874
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0035 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.004 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0024 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0041 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|.|++|+||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=48.29 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|+|+|++|+|||||.+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999885
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0035 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.++|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999886
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0015 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0032 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|+|.|++|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.|+|+|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0043 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998863
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0044 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.+.|++.|++|+||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0041 Score=48.36 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999999874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0054 Score=49.12 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred EEEEEeCCCcccccccc-cc-----ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC
Q psy8722 65 NLAIWDTAGQERFHALG-PI-----YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV 138 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 138 (223)
.+.++|++|........ .. ..-..|-.+++.|..... .+......+.... -.-.+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence 35678999964322111 11 012368889999976542 3333333444332 233677899985221
Q ss_pred CHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 139 MQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.-.+.......+.|+.+++ +|++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 2335566777888887776 455553
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0042 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999873
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0052 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0041 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0051 Score=43.90 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+|.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999875
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0035 Score=45.09 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0029 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=15.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0023 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0043 Score=44.88 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999863
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
-.++|+|++|||||||++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0055 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0054 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0049 Score=44.67 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+|+|++|+||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999998886
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.-.|+++|+.|+||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44578999999999999999875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0052 Score=49.60 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0058 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0084 Score=45.04 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|+|+|+|||||+|....|.
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998876
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0062 Score=46.16 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=22.0
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
++..+...|+|+|++|+||||+.+.|..
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456677899999999999999988763
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0059 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
...+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0073 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
-..+.|++.|..||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0056 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.|+++|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999874
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0053 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-+|+|+|++|+||||+.+.|.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0046 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
=.++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0058 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--|+|+|+.|+|||||++.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 44578999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.007 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0091 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+..-|+|.|++|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999873
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0078 Score=47.29 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
......-+++.|++|+|||+|.+.+..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556788889999999999999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0056 Score=48.06 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|++|+|||||++.+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999988743
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0067 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0081 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+++|++|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998863
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0043 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|+|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999854
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0069 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0071 Score=42.52 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999975
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=42.30 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=56.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCccccccCCHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML--GNDICLTIAGNKIDLEKQRTVMQE 141 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 141 (223)
+.+.|+|+|+.. .......+..+|.+|+++..+... ..+..++..+.... .++.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 567889999865 333445667799999999887654 66666666666543 345678999999985322 224
Q ss_pred HHHHHHHHhCCcEE
Q psy8722 142 DAEKYAQSVGAVHF 155 (223)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (223)
+..+....++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555666665544
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0076 Score=42.02 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.01 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988643
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0079 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.7
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=.++|+|+.|+|||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 357899999999999999986
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.....++|.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999998665
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0074 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.||+|+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0082 Score=47.13 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|+++|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0084 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0082 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
+++++|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999998854
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.011 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.+.=-++++|+.|+|||||++.+.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334468999999999999999988643
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0094 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.++|.|++|+|||+|++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999987543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0099 Score=43.84 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0099 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 44699999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.01 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0089 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999988753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.011 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-.|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.013 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.013 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+++.|+|++||||||+...|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.014 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~ 39 (223)
=.++++|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999987543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999874
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.012 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+ .+|+|+.|+|||||++.+.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4589999999999999976
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...-.+++.|++|+|||+|++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=46.67 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998874
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.019 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||++++.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999998874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.016 Score=42.65 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=43.34 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998743
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.017 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987543
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...-|+++|++|+||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0087 Score=51.69 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999987764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.02 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.019 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.014 Score=45.95 Aligned_cols=85 Identities=18% Similarity=0.033 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccccccc-c---ccccc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHAL-G---PIYYR--MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
+.+.|+||+|....... . ...+. ..+..++|+|.... ...+..+...+.. -+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence 46788899996543221 1 11222 35778899987643 2333333332221 11 23466799996432
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTS 158 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S 158 (223)
...+...+...+.|+..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355667777888765554
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.01 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988743
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999874
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.017 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998743
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.019 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
..|+|+|++|+|||||...|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998876
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-++++|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987775
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=47.01 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999988764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=45.65 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccccc-------cc-----ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHALG-------PI-----YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.++|+||........ .. .-..++.+++|+|.... .+.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 357888999953221110 00 11247889999998733 222222 12233221 2 3346679999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.... .-.+..+....+.|+.++..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 5322 22366778888988877654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.017 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998743
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.73 E-value=0.019 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.-.|++.|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.018 Score=46.24 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.-|+|+|++|||||||...|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 468999999999999999886
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.023 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~ 39 (223)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999988543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
+.-.|++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.019 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-|+|+|++|+|||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=42.18 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999875
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.021 Score=45.21 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
--+.|+|++|+|||||++.+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999853
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.0086 Score=47.05 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=17.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.019 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.--|++.||||+|||+|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999874
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.027 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
...+|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.021 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+||+|+|||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 578999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+...|+|.|..|+||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988863
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.022 Score=42.38 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.|++.|++|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.0099 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999874
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.023 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.--|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445799999999999999999874
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.02 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998874
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.++|.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.02 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
-+++++|++|+|||++++.+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 378999999999999999886
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.028 Score=40.55 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=26.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 187 (223)
+|.+.+-...|.|+..+.+........+..-+....
T Consensus 128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk~~G~~~a~ 163 (181)
T 3tqf_A 128 VPKILFPIHPGRNLPLLIETLVRNHRLKMEGYDSSH 163 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeccCCCCcHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467778888899999988888776666655554444
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.024 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6889999999999999998743
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.027 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
..|++.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999873
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.032 Score=42.02 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+......+..-|++.|..|+||||+++.|.
T Consensus 13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334444567789999999999999999886
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.025 Score=41.12 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999844
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.029 Score=51.25 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~ 40 (223)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986443
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.028 Score=46.67 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.+.-.|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3455799999999999999999874
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.22 Score=36.80 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=55.9
Q ss_pred EEEEEEeCCCc-cccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHH
Q psy8722 64 LNLAIWDTAGQ-ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQED 142 (223)
Q Consensus 64 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 142 (223)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...+..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56788899986 32 22344567899999999876 456677777777666633 4568899999985430 12345
Q ss_pred HHHHHHHhCCcEE
Q psy8722 143 AEKYAQSVGAVHF 155 (223)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (223)
..+....++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555666776554
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.025 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.|++.|++|+|||+|++.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999863
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.026 Score=43.32 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
..|++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999998754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.022 Score=48.55 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy8722 17 KVVLLGEGCVGKTSVVLRY 35 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l 35 (223)
-++|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999995
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.026 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.++++|++|+|||||++.+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 33689999999999999998863
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.024 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
...|++.|++|+|||++.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.035 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
.-|+|+||+|+|||+|...|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 357899999999999999986
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.017 Score=52.72 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.028 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-.|+|.|++|+|||+|++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 223 | ||||
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 7e-48 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-46 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-43 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-42 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-42 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 8e-42 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-41 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 6e-41 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-41 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 5e-40 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-40 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-39 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 2e-37 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 2e-37 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 3e-33 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-33 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 9e-33 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-32 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 7e-32 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-31 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-31 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 3e-31 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 9e-30 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-29 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 4e-29 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 9e-29 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 1e-28 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 5e-28 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-27 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-27 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-27 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 4e-27 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-27 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-26 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 4e-25 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-25 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 6e-24 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 5e-23 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-22 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 6e-22 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 3e-21 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 3e-21 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 1e-20 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-20 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-18 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-18 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-18 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 3e-18 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-18 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 8e-18 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-17 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 9e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-15 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 4e-15 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-14 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 4e-08 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 3e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 8e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 2e-05 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.001 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.003 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 0.003 |
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 153 bits (387), Expect = 7e-48
Identities = 69/166 (41%), Positives = 101/166 (60%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G+ VGKT V+ R+ ED FN I+T+ F + + + GKR+ L IWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR + G +LVYDIT+E SF+ ++NW++ +++ D+ I GNK D+
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E EK A G TSAK N +E F L++ + K
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (377), Expect = 2e-46
Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K++L+G+ VGK+ +++R+VEDKFN ITT+ F K ++I GK++ L IWDTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF + YYR + G +LVYDITDE +F +K W K + + ++ L + GNK D+ +
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V + E A+ +G +SAK + + E+F L++ + EK
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (357), Expect = 2e-43
Identities = 64/168 (38%), Positives = 108/168 (64%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK+VL+G VGKT +V R+ + F T+ F+ K + I G+++ L IWDTAG
Sbjct: 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR +N +L YDIT E+SF + W++E+++ N + + GNKIDL
Sbjct: 64 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
++R V Q+ AE+++++ + TSAK + +E++FL+L+ R++ +A+
Sbjct: 124 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 140 bits (354), Expect = 1e-42
Identities = 61/177 (34%), Positives = 110/177 (62%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++L+G VGK+ ++LR+ +D + +I+T+ F K + + GK + L IWDTAG
Sbjct: 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF + YYR S+G ++VYD+TD++SF VK W++E+ + + + + GNK DL+
Sbjct: 65 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 124
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLAKASE 190
+R V + A+++A + TSA + +E+ FL +++++ E + +L + ++
Sbjct: 125 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 181
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (351), Expect = 2e-42
Identities = 58/164 (35%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKH-ITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+FKV+L+G+ VGKT +++R+ + F I+T+ F NK L++ G ++ L +WDTA
Sbjct: 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 64
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQERF ++ YYR ++ +L+YD+T++ SF+ ++ W+ E+ + +D+ L + GNK+D
Sbjct: 65 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS 124
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+R V +ED EK A+ G TSAK ++ F +++ +
Sbjct: 125 AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (346), Expect = 8e-42
Identities = 133/165 (80%), Positives = 151/165 (91%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
YSFKVVLLGEGCVGKTS+VLRY E+KFN+KHITTL ASFL KKLNI GKR+NLAIWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERFHALGPIYYR SNGA+LVYDITDEDSF+KVKNWVKEL+KMLGN+ICL I GNKIDLE
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
K+R V ++AE YA+SVGA H+HTSAK N+GIEE+FL+L +RM+E
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 136 bits (342), Expect = 3e-41
Identities = 62/166 (37%), Positives = 96/166 (57%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK++++G VGKTS + RY +D F ++T+ F K + KR+ L IWDTAG
Sbjct: 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + G +L+YDIT+E+SF V++W ++K ++ + + GNK D+E
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E + A +G F SAK N +++ F L + EK
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (341), Expect = 6e-41
Identities = 59/173 (34%), Positives = 98/173 (56%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FKVVL+G+ VGK++++ R+ ++FN + +T+ F + + + GK + IWDTAG
Sbjct: 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QER+ + YYR + GA+LVYDI ++E V+ W+KEL+ ++I + + GNK DL
Sbjct: 63 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDLA 186
R V ++A +A+ TSA + +EE F + + + +A
Sbjct: 123 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 175
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (340), Expect = 7e-41
Identities = 56/163 (34%), Positives = 100/163 (61%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
Y FK +++G+ VGK+ ++ ++ E KF T+ F + + ++G+++ L IWDTAG
Sbjct: 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF A+ YYR + GA++VYDIT ++ + +W+ + + + + + + GNK DLE
Sbjct: 63 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
QR V E+A+++A+ G + SAK +E+ FLE ++++
Sbjct: 123 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (335), Expect = 5e-40
Identities = 60/170 (35%), Positives = 107/170 (62%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+Y FK +++G+ VGK+ ++L++ + +F H T+ F + +NI GK++ L IWDTA
Sbjct: 1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132
GQE F ++ YYR + GA+LVYDIT ++F + +W+++ ++ +++ + + GNK DL
Sbjct: 61 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 120
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
E +R V +E+ E +A+ G + TSAK +EE F+ ++ + K Q+
Sbjct: 121 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (335), Expect = 6e-40
Identities = 56/164 (34%), Positives = 97/164 (59%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K++++GE VGK+S++LR+ +D F+ + T+ F K +++ G + LAIWDTAGQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ERF L P YYR + G +LVYD+T D+F K+ NW+ EL+ + + + ++
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
R V + + K+A+ + SAK G++ F EL +++++
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 131 bits (331), Expect = 2e-39
Identities = 57/168 (33%), Positives = 101/168 (60%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ FK +++G GK+ ++ +++E KF + T+ F +K +N+ GK + L IWDTAG
Sbjct: 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
QERF ++ YYR + GA+LVYDIT +++ + NW+ + + + +I + + GNK DL+
Sbjct: 64 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 123
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
R V +A ++AQ + TSA +EE F++ ++++L K +
Sbjct: 124 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 171
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 126 bits (317), Expect = 2e-37
Identities = 60/161 (37%), Positives = 101/161 (62%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+V LGE VGKTS++ R++ D F+ + T+ FL+K + + + + L +WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF +L P Y R S AV+VYDIT+ +SF++ W+ +++ G+D+ + + GNK DL +
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R V E+ E+ A+ + + TSAK ++++F ++ +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 126 bits (318), Expect = 2e-37
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 11/180 (6%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGK----------R 63
Y K++ LG+ VGKT+ + RY ++KFN K ITT+ F K++ + +
Sbjct: 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 63
Query: 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKV-KNWVKELKKMLGNDIC 122
++L +WDTAGQERF +L ++R + G +L++D+T + SF V + +
Sbjct: 64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 123
Query: 123 LTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
+ + GNK DL QR V + A + A G +F TSA + +E+ L ++++ ++
Sbjct: 124 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 3e-33
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y +KF +++ T+ + I G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E + L P+ Y ++ ++ + + SFE VK + G +IDL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 135 QRTV------------MQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQ 181
+ E AEK A+ + AV + SA +G++ +F E LE +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
Query: 182 E 182
Sbjct: 182 P 182
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (289), Expect = 3e-33
Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FKV+LLG+G VGK+S++ RYV +KF+ + T+ FLNK L + G + + IWDTAGQE
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML----GNDICLTIAGNKID 131
RF +L +YR S+ +L + + D SF+ + NW KE I GNKID
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLE 178
+ +R V E+A+ + + G + TSAK + F E +R+L
Sbjct: 127 I-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (286), Expect = 9e-33
Identities = 69/164 (42%), Positives = 113/164 (68%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
FK+VLLGE VGK+S+VLR+V+ +F+E +T+ A+FL + + + + IWDTAGQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
ER+H+L P+YYR + A++VYDIT+E+SF + KNWVKEL++ +I + ++GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
+R V ++A+ YA + TSAK + + E+F+ +++++ +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (286), Expect = 1e-32
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAI 68
+ K V++G+G VGKT +++ Y D F E+++ T+ + + GK+ L +
Sbjct: 3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGL 61
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128
+DTAGQE + L P+ Y M++ ++ + + + SF+ VK K ++ + G
Sbjct: 62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 121
Query: 129 KIDL------------EKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQR 175
+IDL K++ + E +K A+ +GA + SA +G++ +F E
Sbjct: 122 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181
Query: 176 MLE 178
+L
Sbjct: 182 ILT 184
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 7e-32
Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K V++G+G VGKT +++ Y + F ++I T+ ++ + GK +NL +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGQ 63
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E + L P+ Y ++ +++ + + SFE V+ + + + + G K+DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 135 QRTVMQE------------DAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEK 179
+ +++ A+ +GAV + SA RG++ +F E + +L
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 111 bits (278), Expect = 1e-31
Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV LLG+ VGK+S++ R+VED F+ T+ ASF+ K + + IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
RF AL P+YYR S A++VYDIT E++F +KNWV+EL++ I + IAGNK DL
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
R VM+ DA+ YA S+ A+ TSAK I E+F+E+S+R+
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (278), Expect = 1e-31
Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
S K+VLLGE VGK+S+VLR+V + F E T+ A+FL +++ I + IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL-- 132
ERF +L P+YYR + A++VYD+T SF K ++WVKEL + DI + + GNKID+
Sbjct: 63 ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122
Query: 133 -EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V +E+ EK A+ G + F TSAK + ++FL + +++ K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 3e-31
Identities = 50/163 (30%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KVV+LG G VGK+++ +++V F EK+ T++ F K++ + L I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
+F ++ +Y + G +LVY + ++ SF+ +K ++ ++ + + + GNK+DLE
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRML 177
+R V + A+ G TSAK ++E+F E+ ++M
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 9e-30
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+ + K+V++G G VGK+++ +++++ F + T++ K ++ G L I DTA
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTA 62
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTI-AGNKID 131
GQE F A+ Y R +G +LV+ I D SF +V ++ ++ D + GNK D
Sbjct: 63 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
LE QR V + +A + S +F SAK+ ++E F +L + + + ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 105 bits (263), Expect = 2e-29
Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
+ K+V++G G VGK+S++ RY + F + + T+ FL +++ + + + L +WDTAGQ
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK 134
E F A+ YYR + VLV+ TD +SFE + +W +++ +G+ I + NKIDL
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLD 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
+ E+AE A+ + + TS K + + E+F L+++ L+
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 105 bits (261), Expect = 4e-29
Identities = 49/165 (29%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV+++G G VGK+++ L+++ D+F E + T +A KK+ + G+ + + I DTAGQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+ A+ Y+R G + V+ IT+ +SF ++ +++ ++ + ++ + GNK DLE
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+R V E+A+ A + TSAK ++++F +L + + +
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (258), Expect = 9e-29
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK++++G+ VGKT + R+ +F ++ T+ F + ++I G+R+ + +WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 76 RFHALG-PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLE 133
RF YYR + V VYD+T+ SF + W++E K+ L NDI + GNK DL
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAK---MNRGIEEMFLEL 172
V + A+K+A + F TSAK N +E +F+ L
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 1e-28
Identities = 54/173 (31%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Query: 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWD 70
S +++V++G G VGK+++ +++++ F + T++ K+ I + L I D
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILD 59
Query: 71 TAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTI-AGNK 129
TAGQE F A+ Y R G +LV+ +TD SFE++ + +++ ++ D I GNK
Sbjct: 60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQE 182
DL+ QR V QE+ ++ A+ + + SAK+ +++ F EL R++ K QE
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV-RVIRKFQE 171
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (253), Expect = 5e-28
Identities = 49/164 (29%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V++G G VGK+++ ++ +++ F +++ T++ S+ + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
+ A+ Y R G + V+ I + SFE + + +++K++ +D+ + + GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLE 178
RTV A+ A+S G + TSAK +G+E+ F L + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 1e-27
Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K+V++G+ GKT+++ + +D F E ++ T+ I +R+ L++WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPY 62
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE--- 133
+ + P+ Y S+ ++ +DI+ ++ + V K + + + + G K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 134 ---------KQRTVMQEDAEKYAQSVGAVHFH-TSAKMN-RGIEEMFLELSQRMLEK 179
+Q V + A+ +GA + SA + + ++F + + K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 100 bits (250), Expect = 2e-27
Identities = 45/167 (26%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
++K+V++G+G VGK+++ +++ + F + T++ S+ K I + L + DTAGQ
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133
E F A+ Y R +G ++VY +TD+ SFE V + + + ++ + + + NK+DL
Sbjct: 63 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAK-MNRGIEEMFLELSQRMLEK 179
R V ++ ++ A + TSAK +++ F +L + + ++
Sbjct: 123 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (251), Expect = 2e-27
Identities = 56/174 (32%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
KV++LG+ VGKTS++ +YV KF+ ++ T+ A FL K++ + + + + IWDTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNW----VKELKKMLGNDICLTIAGNKID 131
RF +LG +YR ++ VLV+D+T ++F+ + +W + + + + GNKID
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL 185
LE ++ + +F TSAK +E+ F +++ L++ E +L
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (248), Expect = 4e-27
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K+V++G+G GKT +++ +D+F E ++ T+ + + GK++ LA+WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+ L P+ Y ++ ++ + I DS E + K ++ + + GNK DL
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121
Query: 136 RTV------------MQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLE 178
E+ A +GA + SAK G+ E+F ++ L+
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.4 bits (246), Expect = 7e-27
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLA-IWDTAGQ 74
KV++LG+ VGKTS++ RYV DK+++++ T+ A FL K++ + G ++ +WDTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 75 ERFHALGPIYYRMSNGAVLVYDITDEDSFE----KVKNWVKELKKMLGNDICLTIAGNKI 130
ERF +LG +YR ++ VLVYD+T+ SFE ++ I GNKI
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 131 DLEKQRTVMQE-DAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQ 181
D E+ + ++ E A++ A+S+G + TSAK ++ F E+++ L++ Q
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.1 bits (243), Expect = 2e-26
Identities = 50/163 (30%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+K+V+LG G VGK+++ +++V+ F EK+ T++ K++ + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTE 62
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVK-ELKKMLGNDICLTIAGNKIDLEK 134
+F A+ +Y + G LVY IT + +F +++ + L+ D+ + + GNK DLE
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 QRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRM 176
+R V +E + A+ F +SAK + E+F +L +++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.7 bits (234), Expect = 4e-25
Identities = 47/169 (27%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
FK+VL+G+G GKT+ V R++ +F +K++ TL + + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135
+F L YY + A++++D+T +++ V NW ++ + +I + + GNK+D++ +
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIKDR 122
Query: 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ-EF 183
+ + + + ++ SAK N E+ FL L+++++ EF
Sbjct: 123 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 169
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 93.6 bits (231), Expect = 9e-25
Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 9/164 (5%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
+++++G GKT+++ + + T + K ++ +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-----TVEYKNISFTVWDVGGQDK 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNK---IDL 132
L Y++ + G + V D D + + + + L + D L + NK +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ + + T A G+ E LS ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (226), Expect = 6e-24
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 3/166 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++V + G G VGK+S+VLR+V+ F E +I T++ ++ + ++ L I DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN--DICLTIAGNKIDLE 133
+F A+ + + +LVY IT S E++K +++ ++ G+ I + + GNK D
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V +AE A++ TSAK+N ++E+F EL +
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.3 bits (220), Expect = 5e-23
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 4/166 (2%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K+ + G VGK+++V+R++ +F ++ TL++++ + I + +++ I DTAGQE
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEK 134
+ R G VLVYDITD SFE+V L ++ ++ L + GNK DL+
Sbjct: 62 DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRG-IEEMFLELSQRMLEK 179
R V E+ EK A + + SA G I E+F EL + + +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 87.7 bits (216), Expect = 2e-22
Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 9/183 (4%)
Query: 1 MMANSLDRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIA 60
+ ++ D+ S ++++LG GKT+++ R + T ++
Sbjct: 3 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE-----TLS 57
Query: 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND 120
K L L +WD GQ YY + + V D TD+D + + +
Sbjct: 58 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ 117
Query: 121 ICLTI-AGNKIDLEKQRTV---MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
+ NK D + +E + +SA GI E L +
Sbjct: 118 DAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
Query: 177 LEK 179
E+
Sbjct: 178 KEE 180
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 86.5 bits (213), Expect = 6e-22
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 9/169 (5%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
++++LG GKT+++ + + T K + +WD
Sbjct: 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-----KNVKFNVWDV 63
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKI 130
GQ++ L YY + G + V D D D ++ + + + D + I NK
Sbjct: 64 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123
Query: 131 DLEKQRT---VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
DL + ++ + + A G+ E L+
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.7 bits (208), Expect = 3e-21
Identities = 31/177 (17%), Positives = 74/177 (41%), Gaps = 13/177 (7%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
S ++ +LG+ GK+S++ R++ + T + K++ + G+ + I +
Sbjct: 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREE 59
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKM-----LGNDICLTIA 126
AG + ++ + V+ + DE+SF+ V +L + G + L
Sbjct: 60 AGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 114
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQRMLEKAQE 182
++I R V A + ++ T A ++ +F E++Q+++ ++
Sbjct: 115 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.8 bits (208), Expect = 3e-21
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+ S K+ +LG VGK+S+ +++VE +F + + T++ +F K + + G+ +L + DTA
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTA 60
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV-KELKKMLGNDICLTIAGNKID 131
GQ+ + Y NG +LVY +T SFE +K K L + I + + GNK D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172
L +R + E+ + A+S A +SAK N+ ++F +
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 1e-20
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+KV+LLG VGK+++ + + + ++ + + G+ +L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAA--GHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTI-AGNKIDLEK 134
L M + V+VY +TD+ SFEK +L++ D I GNK DL +
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119
Query: 135 QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
R V ++ A TSA ++ ++ +F + +++ +
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 82.4 bits (202), Expect = 2e-20
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 9/169 (5%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
+ KV+++G GKT+++ ++ ++ T N +WD
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT-----RFLMWDI 66
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKI 130
GQE + YY + ++V D TD + + + + L L I NK
Sbjct: 67 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 126
Query: 131 DLEKQRT---VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
D+++ T + Q + A G+ + + R+
Sbjct: 127 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.4 bits (192), Expect = 1e-18
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K++LLG G GK++ + + + + T + + + D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE----YPFDLQSVIFRMVDVGGQR 56
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDS-----------FEKVKNWVKELKKMLGNDICLT 124
+ + + +++ D E + + + +
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
+ NK DL +++ + + + + G +A+ I +MF++L+
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF--ILKMFVDLNPD 165
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 77.7 bits (190), Expect = 2e-18
Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 9/171 (5%)
Query: 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIW 69
S+ +++LLG GKT+++ + + + T + + L +W
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVW 65
Query: 70 DTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGN 128
D GQ + Y+ ++ + V D D FE+ + EL + + + + I N
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 129 KIDLEKQRT---VMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
K DL + + + SA G+++ + + +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.4 bits (189), Expect = 2e-18
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
K++ LG GKT+++ D+ TLQ ++ +A + +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEKQ 135
L Y+ NG V + D D + F++ + + L + D+ I GNKID
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 136 RTVMQ----------EDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174
+ + +++ F S M G E F LSQ
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.2 bits (189), Expect = 3e-18
Identities = 22/175 (12%), Positives = 56/175 (32%), Gaps = 20/175 (11%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K++LLG G GK++ + + + T + K + + D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQR 55
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV-------KELKKMLGN----DICLT 124
+ + + ++ D + ++ N ++ +
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ NK DL +++ + + + + G H + + E F + ++
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF--LVECFRGKRRDQQQR 168
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 76.2 bits (186), Expect = 4e-18
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 9/168 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ ++ + T+ + + + L IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKIDLEK 134
+ Y+ ++G + V D D + + ++ L L I NK DL
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 135 QRTV---MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ + +S SA + L + +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (184), Expect = 8e-18
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
++VVL+GE VGK+++ + + + L + L + G+ + + D
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61
Query: 73 -GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKI 130
+ L ++ + ++VY ITD SFEK +L++ DI + + GNK
Sbjct: 62 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121
Query: 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
DL + R V + A TSA + ++E+F + +++ +
Sbjct: 122 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 75.1 bits (183), Expect = 1e-17
Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 9/168 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++++LG GKT+++ R + T + K L +WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPT-----IGFNVETVTYKNLKFQVWDLGGLT 60
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEK 134
YY ++ + V D D D K+ + L++ L + NK D+E+
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 135 QRTV---MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
T + F TSA G++E L + + +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 72.8 bits (177), Expect = 9e-17
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 8/165 (4%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
++ L+G GKT+ V +FNE I T+ + I + + +WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLE- 133
RF ++ Y R + V + D D++ E KN + L K I + + GNK DL
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118
Query: 134 --KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
++ ++++ Q + S K I+ L Q
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.6 bits (169), Expect = 2e-15
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
K++LLG G GK+++V + I K L+ ++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH---------FTFKDLHFKMFDVGGQR 53
Query: 76 RFHALGPIYYRMSNGAVLVYDITDEDSF-----------EKVKNWVKELKKMLGNDICLT 124
+ + ++D D E +K + D +
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 125 IAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179
+ NK DL +++ Y + G+ + +A I+ F +L++R K
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY---IQCQFEDLNKRKDTK 165
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.4 bits (169), Expect = 4e-15
Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 28/201 (13%)
Query: 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
+ +++LLG G GK+++V + + T ++N ++D G
Sbjct: 5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE----TKFQVDKVNFHMFDVGG 56
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWV-------KELKKMLGN----DIC 122
Q + + V + + + N K + N I
Sbjct: 57 QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116
Query: 123 LTIAGNKIDLEKQRTVMQEDA-EKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQ 181
+ + NK DL ++ + + E Y A G + +A+
Sbjct: 117 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRV--------TRAK 168
Query: 182 EFDLAKASELSRRGSMRRNVV 202
F + +S R+
Sbjct: 169 YFIRDEFLRISTASGDGRHYC 189
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 67.0 bits (162), Expect = 1e-14
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 21/180 (11%)
Query: 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT 71
+ K+V LG GKT+++ +D+ + T + + +D
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDL 64
Query: 72 AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGN-DICLTIAGNKI 130
G + + Y NG V + D D + + K + L ++ + I GNKI
Sbjct: 65 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124
Query: 131 DLEKQRTV---------------MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175
D + + + K + F S +G E F ++Q
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.3 bits (150), Expect = 1e-12
Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 10/199 (5%)
Query: 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76
V+ +G GKT + +R + ++ + T++ S K+N I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 77 FHALGPIYYRMSNGAVLVYDITDEDSF-EKVKNWVKEL---KKMLGNDICLTIAGNKIDL 132
L + + V V D + V ++ ++ L N L IA NK D+
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 133 EKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFDL----AKA 188
++ + ++ + + + SA + K EF +
Sbjct: 121 AMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF 179
Query: 189 SELSRRGSMRRNVVVVEDE 207
E S +G +
Sbjct: 180 LECSAKGGRGDTGSADIQD 198
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 26/200 (13%), Positives = 57/200 (28%), Gaps = 16/200 (8%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTA 72
+Y +++ G GKTS++ D + + + ++
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKL 59
Query: 73 GQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGN 128
+ L + +V D ++ ++ + N I + IA N
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 129 KIDLEKQRT--VMQEDAEK------YAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180
K +L R +++ E + E L
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQ---STDG 176
Query: 181 QEFDLAKASELSRRGSMRRN 200
+F +AS ++ GS+ +
Sbjct: 177 FKFANLEASVVAFEGSINKR 196
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 3e-06
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 13/167 (7%)
Query: 16 FKVVLLGEGCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQ 74
KVV+ G GK+S++ + I L + ++I G L++ +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 75 ERFHALGPIYYRMSNGA-----VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNK 129
R VL E L + +T+ NK
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 130 IDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRM 176
D+ + ++ G SA+ G++ + L Q M
Sbjct: 122 ADITG-------ETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 42.8 bits (99), Expect = 8e-06
Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 11/179 (6%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRY-------VEDKFNEKHITTLQASFLNKKLNIAGKRLN 65
TYS V ++G+ VGK++++ + + ++ +
Sbjct: 3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 62
Query: 66 LAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTI 125
L A E N V V D+ + E K L + + +
Sbjct: 63 LHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARA--LKPLVGKVPILL 120
Query: 126 AGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
GNK+D K + + A SA R + E+ +L M E +
Sbjct: 121 VGNKLDAAKYPEEAMKAYHELLP--EAEPRMLSALDERQVAELKADLLALMPEGPFFYP 177
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 16/177 (9%), Positives = 53/177 (29%), Gaps = 6/177 (3%)
Query: 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDT- 71
+Y + ++G VGK++++ + + K + ++ G + +
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 72 ----AGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAG 127
+ + LV + + + V + G +
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRE-GKAPVILAVN 121
Query: 128 NKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
+++++ ++ +Q SA+ ++ + + + + E F
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 178
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 36.2 bits (82), Expect = 0.001
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKF---NEKHITTLQASFLNKKLNIAGKRLNLAI------ 68
++ G VGK++++ R K +T K I +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 69 WDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELK-------KMLGNDI 121
++ + + AVLV D K E+ + DI
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 122 CLTIAGNKID-LEKQRTVMQEDAEKYAQSVGAVH---FHTSAKMNRGIEEMFLELSQRML 177
+A NK+D ++ + V+ AEK+ + + SAK IE + + + +
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182
Query: 178 EK 179
E+
Sbjct: 183 ER 184
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 35.1 bits (79), Expect = 0.003
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 6/171 (3%)
Query: 18 VVLLGEGCVGKTSVVLRYVEDKF----NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAG 73
V+++G VGK+++ + V+ K +E+ +T + K ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 74 QERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133
Q+ + + K + + + + NK +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 134 KQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQRMLEKAQEFD 184
++ + E Y+ G SA+ N ++ M + +++ EK + +
Sbjct: 123 REFE-REVKPELYSLGFGEPIP-VSAEHNINLDTMLETIIKKLEEKGLDLE 171
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (79), Expect = 0.003
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75
+V G GK+S + K + T + L +A + + + E
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 76 RFHALGPIYY---------RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIA 126
+ + R S ++V + + ++ + L
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 127 GNKIDLEKQRTVMQEDAEKYAQSVGAVHFH-TSAKMNRGIEEMFLELSQ 174
+K+ ++ + E G V S+ +G++++ +L
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 223 | |||
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.97 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.96 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.92 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.92 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.89 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.89 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.87 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.86 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.85 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.83 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.81 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.81 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.79 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.78 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.75 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.72 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.65 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.65 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.64 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.64 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.5 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.49 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.25 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.22 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.17 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.13 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.11 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.93 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.55 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.2 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.2 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.06 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.02 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.84 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.62 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.57 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.56 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.44 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.43 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.4 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.35 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.35 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.27 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.26 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.25 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.25 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.2 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.16 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.13 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.03 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.98 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.97 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.95 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.94 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.94 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.91 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.88 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.86 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.85 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.83 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.83 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.81 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.8 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.78 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.78 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.78 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.78 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.77 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.77 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.76 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.72 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.71 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.69 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.69 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.69 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.67 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.66 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.64 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.62 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.61 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.6 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.58 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.57 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.57 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.56 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.55 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.55 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.5 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.45 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.45 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.45 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.44 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.41 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.39 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.38 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.36 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.26 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.16 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.08 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.06 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.06 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.04 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.01 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.95 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.89 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.82 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.79 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.76 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.67 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.66 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.66 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.64 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.58 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.55 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.47 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.42 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.41 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.06 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.91 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.89 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.87 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.8 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.7 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.57 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.54 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.53 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.43 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.39 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.36 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.28 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.26 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.11 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.0 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.87 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.64 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.58 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.56 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.4 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.31 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.26 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 93.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 93.16 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.09 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.01 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.98 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.98 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.95 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.89 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.73 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.61 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.37 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.35 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.16 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.15 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.99 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.79 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.45 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.34 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.32 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.02 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.33 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.08 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.26 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 88.09 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.67 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 86.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.71 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.66 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 85.79 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 84.83 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 83.31 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 82.99 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 82.13 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.02 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.01 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.96 |
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3e-37 Score=226.05 Aligned_cols=168 Identities=36% Similarity=0.657 Sum_probs=157.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
++.+.+||+|+|++|+|||||+++|..+.+.+.+.++.+.+.....+...+..+.+.+|||||++.+..++..+++++|+
T Consensus 1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~ 80 (169)
T d3raba_ 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG 80 (169)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 35678999999999999999999999999998989999999988889899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+........|+++++||.|+...+.+..++++++++.++++++++||++|.|++++|+
T Consensus 81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~ 160 (169)
T d3raba_ 81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999999999999888887777899999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 171 ELSQRMLE 178 (223)
Q Consensus 171 ~i~~~~~~ 178 (223)
+|++.+++
T Consensus 161 ~l~~~i~e 168 (169)
T d3raba_ 161 RLVDVICE 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-37 Score=224.45 Aligned_cols=169 Identities=38% Similarity=0.695 Sum_probs=159.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.+||+|+|++|||||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+|||+|++.+..++..++++++++
T Consensus 2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~ 81 (171)
T d2ew1a1 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 81 (171)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
++|||++++.++..+..|+..+........|+++|+||+|+...+.+..++++++++.+++++++|||++|.||+++|.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~ 161 (171)
T d2ew1a1 82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 161 (171)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence 99999999999999999999988877778999999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 172 LSQRMLEKA 180 (223)
Q Consensus 172 i~~~~~~~~ 180 (223)
|+++++...
T Consensus 162 l~~~l~~~~ 170 (171)
T d2ew1a1 162 LACRLISEA 170 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-37 Score=224.61 Aligned_cols=165 Identities=81% Similarity=1.275 Sum_probs=149.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+|+|++|||||||+++|..+.+.+.+.++.+.++.......++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 67999999999999999999999999999999999999988898899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||+++++||+.+..|+..+........|+++++||+|+...+.+..++++++++.++++|+++||++|.||+++|.+|+
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~ 161 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 161 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence 99999999999999999988877767789999999999998889999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 174 QRMLE 178 (223)
Q Consensus 174 ~~~~~ 178 (223)
+++++
T Consensus 162 ~~i~~ 166 (167)
T d1z08a1 162 KRMIE 166 (167)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98863
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-37 Score=224.73 Aligned_cols=171 Identities=29% Similarity=0.486 Sum_probs=154.8
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
+++.+.+||+|+|++|||||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++++|
T Consensus 1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 79 (173)
T d2fn4a1 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 79 (173)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence 3567899999999999999999999999999888777654 455667888999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++++.++..+..|+..+.+.. ..+.|+++|+||+|+...+.+..+++..++..++++|++|||++|.||+++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~ 159 (173)
T d2fn4a1 80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 159 (173)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence 9999999999999999999999887654 467899999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKAQ 181 (223)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (223)
|+.|++.+.++++
T Consensus 160 f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 160 FEQLVRAVRKYQE 172 (173)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-37 Score=222.74 Aligned_cols=163 Identities=34% Similarity=0.629 Sum_probs=153.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|||||||+++|..+.+...+.+|.+.++........+..+.+.+||++|++.+......++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 48999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+++.+..|+..+....+ ++|+++|+||+|+...+.+..++++++++.++++|+++||++|.|++++|++|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 160 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence 999999999999999999887654 5899999999999888889999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8722 175 RMLE 178 (223)
Q Consensus 175 ~~~~ 178 (223)
++++
T Consensus 161 ~~lq 164 (164)
T d1z2aa1 161 KHLQ 164 (164)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8863
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-36 Score=220.54 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=135.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+|+|++|||||||+++|.+..+... .++ +.+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence 7999999999999999999997766433 333 34444567788999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
|++++.+++.+..|+..+..... ..+|+++|+||+|+...+++..++++++++.++++|+++||++|.|++++|..|++
T Consensus 80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~ 159 (168)
T d2gjsa1 80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 99999999999999999887653 56899999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 175 RMLEKAQ 181 (223)
Q Consensus 175 ~~~~~~~ 181 (223)
.+..++.
T Consensus 160 ~i~~~~~ 166 (168)
T d2gjsa1 160 QIRLRRD 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-36 Score=219.22 Aligned_cols=164 Identities=34% Similarity=0.694 Sum_probs=155.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+-+||+|+|++|||||||+++|.++.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus 2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i 81 (166)
T d1z0fa1 2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 81 (166)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence 46799999999999999999999999999998899999998889999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||+++.+++..+..|+..+........|+++++||.|+.....+..+++.++++.++++++++||++|.||+++|++|
T Consensus 82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i 161 (166)
T d1z0fa1 82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 161 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988888889999999999998888888999999999999999999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
++++
T Consensus 162 ~~~i 165 (166)
T d1z0fa1 162 AKKI 165 (166)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-36 Score=219.54 Aligned_cols=164 Identities=30% Similarity=0.459 Sum_probs=151.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+.+||+|+|++|||||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..+...++.++|++|
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 80 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence 5678999999999999999999999999888889988876 456788999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++.+++++++++|+++||++|.|++++|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 160 (167)
T d1xtqa1 81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 160 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999887765 467999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 172 LSQRML 177 (223)
Q Consensus 172 i~~~~~ 177 (223)
|++.+.
T Consensus 161 li~~~~ 166 (167)
T d1xtqa1 161 IILEAE 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.4e-36 Score=218.88 Aligned_cols=164 Identities=46% Similarity=0.764 Sum_probs=155.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
-+++||+|+|.+|||||||+++|..+.+.+.+.++.+..+.......++....+.+||++|++.+...+..+++.++++|
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 47899999999999999999999999999999999999998888888999899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++++|+.+..|+..+.....+..|+++|+||+|+...+.+..+++++++..++++|+++||++|.||+++|.+|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999999999988888899999999999998888899999999999999999999999999999999999
Q ss_pred HHHH
Q psy8722 173 SQRM 176 (223)
Q Consensus 173 ~~~~ 176 (223)
++++
T Consensus 162 ~~~i 165 (167)
T d1z0ja1 162 SRRI 165 (167)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.5e-36 Score=219.29 Aligned_cols=165 Identities=27% Similarity=0.474 Sum_probs=151.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|++|+|||||++++.++.+.+.+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 81 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence 579999999999999999999999999888888877655 4566789999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC-CHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~ 171 (223)
|||++++.||..+..|+..+.+.. ..+.|+++++||+|+...+.+..+++.++++.++++|+++||+++. ||+++|..
T Consensus 82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~ 161 (169)
T d1x1ra1 82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence 999999999999999999987764 4578999999999999888999999999999999999999999886 99999999
Q ss_pred HHHHHHHH
Q psy8722 172 LSQRMLEK 179 (223)
Q Consensus 172 i~~~~~~~ 179 (223)
|++.++++
T Consensus 162 l~~~i~~~ 169 (169)
T d1x1ra1 162 LVRVIRQQ 169 (169)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99988763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-36 Score=220.14 Aligned_cols=170 Identities=34% Similarity=0.660 Sum_probs=159.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+|+|++|||||||+++|..+.+.+.+.++.+.......+..++..+.+.+||++|++.+..++..++.+++++
T Consensus 2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (174)
T d2bmea1 2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 81 (174)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence 46779999999999999999999999999999899999888888888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|+|||.++++++..+..|+..+......+.|+++++||+|+....+...+...++++.++++++++||++|.|++++|.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~ 161 (174)
T d2bmea1 82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 161 (174)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence 99999999999999999999998888888999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 172 LSQRMLEKAQ 181 (223)
Q Consensus 172 i~~~~~~~~~ 181 (223)
++++++++.+
T Consensus 162 l~~~i~~~~~ 171 (174)
T d2bmea1 162 CARKILNKIE 171 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=218.30 Aligned_cols=168 Identities=36% Similarity=0.704 Sum_probs=153.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+-+||+|+|++|||||||++++.++.+.+.+.++.+...........+..+.+.+||++|++.+...+..++..+|++|+
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 81 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence 56899999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||++++.+|+.+..|+..+......++|++||+||+|+...+....++..+++..++++|+++||++|.||+++|.+|+
T Consensus 82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~ 161 (173)
T d2a5ja1 82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 161 (173)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999999888778899999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 174 QRMLEKAQ 181 (223)
Q Consensus 174 ~~~~~~~~ 181 (223)
+.++++.+
T Consensus 162 ~~i~~~~~ 169 (173)
T d2a5ja1 162 KEIYRKIQ 169 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-36 Score=218.37 Aligned_cols=161 Identities=37% Similarity=0.698 Sum_probs=152.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 69999999999999999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
|++++.++..+..|+..+.....++.|+++|+||+|+...+.+..+++.+++..++++|++|||++|.||+++|++|+++
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~ 160 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence 99999999999999999988887889999999999998888889999999999999999999999999999999999987
Q ss_pred H
Q psy8722 176 M 176 (223)
Q Consensus 176 ~ 176 (223)
+
T Consensus 161 l 161 (164)
T d1yzqa1 161 L 161 (164)
T ss_dssp S
T ss_pred h
Confidence 5
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4.2e-36 Score=219.69 Aligned_cols=164 Identities=30% Similarity=0.522 Sum_probs=148.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+-+||+|+|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il 81 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence 568999999999999999999999999988889888776 4567789999999999999999998889999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+++.+..|+..+.+.. .+++|+++|+||+|+...+++..++++++++.++++|+++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l 161 (168)
T d1u8za_ 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence 999999999999999999987764 4679999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
++++..
T Consensus 162 ~~~i~~ 167 (168)
T d1u8za_ 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 988754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-35 Score=219.56 Aligned_cols=177 Identities=34% Similarity=0.652 Sum_probs=163.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+...-+||+|+|++|||||||+++|..+.+...+.++.+..+....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ 81 (194)
T d2bcgy1 2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 81 (194)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 45678999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+|+|||++++.++..+..|+..+.+....+.|+++|+||.|+.+...+..++...++...+++|+++||++|.|+.++|+
T Consensus 82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~ 161 (194)
T d2bcgy1 82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 161 (194)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence 99999999999999999999998887778899999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8722 171 ELSQRMLEKAQEFDLAK 187 (223)
Q Consensus 171 ~i~~~~~~~~~~~~~~~ 187 (223)
.|++.+.+.........
T Consensus 162 ~l~~~i~~~~~~~~~~~ 178 (194)
T d2bcgy1 162 TMARQIKESMSQQNLNE 178 (194)
T ss_dssp HHHHHHHHHCCHHHHHT
T ss_pred HHHHHHHHHhhhcccCc
Confidence 99999987765554443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-35 Score=218.20 Aligned_cols=170 Identities=34% Similarity=0.641 Sum_probs=155.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++-+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+...+..+++.++++|
T Consensus 2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i 81 (175)
T d2f9la1 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 81 (175)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence 46799999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||.+++.|+..+..|+..+.....+++|+++|+||+|+.+.+....+....+...++.+++++||++|.|++++|+++
T Consensus 82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l 161 (175)
T d2f9la1 82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161 (175)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence 99999999999999999999999888889999999999998887778888889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 173 SQRMLEKAQE 182 (223)
Q Consensus 173 ~~~~~~~~~~ 182 (223)
++.+.+...+
T Consensus 162 ~~~i~~~~~~ 171 (175)
T d2f9la1 162 LTEIYRIVSQ 171 (175)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9998766554
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-35 Score=218.23 Aligned_cols=169 Identities=41% Similarity=0.735 Sum_probs=129.8
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+-+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 56789999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
+|||++++.++..+..|+..+......+.|+++|+||.|+...+....+++.+++...+++|+++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l 163 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988878889999999999998888888888999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8722 173 SQRMLEKAQ 181 (223)
Q Consensus 173 ~~~~~~~~~ 181 (223)
++.+.++..
T Consensus 164 ~~~i~~k~~ 172 (173)
T d2fu5c1 164 ARDIKAKMD 172 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999977654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-35 Score=218.91 Aligned_cols=168 Identities=29% Similarity=0.578 Sum_probs=146.9
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRM 87 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (223)
++.+....+||+|+|++|||||||+++|..+.+...+.+|.+.. ....+..++..+.+.+||++|++.+...+..++++
T Consensus 2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~ 80 (185)
T d2atxa1 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 80 (185)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence 34566889999999999999999999999999998888888644 45667788888999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhC-Cc
Q psy8722 88 SNGAVLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVG-AV 153 (223)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~ 153 (223)
+|++++|||+++++||+++.. |...++. ..++.|+++|+||+|+.+ .+.+..+++.++++.++ ++
T Consensus 81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~ 159 (185)
T d2atxa1 81 TDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 159 (185)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred cceeeeccccchHHHHHHHHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence 999999999999999998766 5555554 456799999999999853 46778899999999988 68
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
|++|||++|.||+++|+.++++++
T Consensus 160 ~~E~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 160 YVECSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHHc
Confidence 999999999999999999998875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-35 Score=216.11 Aligned_cols=164 Identities=32% Similarity=0.491 Sum_probs=146.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+|+|++|+|||||+++|..+.+.+.+.+|.+..+.. .+..++..+.+.+||++|++.+. ....++++++++++|
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv 79 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV 79 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence 5899999999999999999999999999999998887744 44578888999999999998764 456688999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCC-CHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNR-GIEEMFLEL 172 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i 172 (223)
||++++.++..+..|+....... ..+.|+++|+||+|+...+.+..++++++++.++++|+++||++|. ||+++|..|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l 159 (168)
T d2atva1 80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence 99999999999999887765543 3679999999999998888999999999999999999999999998 599999999
Q ss_pred HHHHHHHH
Q psy8722 173 SQRMLEKA 180 (223)
Q Consensus 173 ~~~~~~~~ 180 (223)
++.+.+++
T Consensus 160 ~~~i~~~r 167 (168)
T d2atva1 160 CREVRRRR 167 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99987764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-35 Score=215.58 Aligned_cols=164 Identities=42% Similarity=0.793 Sum_probs=155.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
.++||+++|++|||||||+++|..+.+...+.++.+.++........+..+.+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 47899999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELS 173 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 173 (223)
|||+.+..++..+..|...+.+...++.|+++|+||+|+...+.+..+++++++..++++|+++||++|.||+++|..|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~ 164 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888888899999999999998899999999999999999999999999999999999998
Q ss_pred HHHH
Q psy8722 174 QRML 177 (223)
Q Consensus 174 ~~~~ 177 (223)
+++.
T Consensus 165 ~~i~ 168 (170)
T d1r2qa_ 165 KKLP 168 (170)
T ss_dssp HTSC
T ss_pred HHHh
Confidence 8653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-35 Score=218.14 Aligned_cols=162 Identities=31% Similarity=0.502 Sum_probs=147.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+|+|++|||||||+++|..+.+.+.+.+|.+..+ .....+++..+.+.+||++|++.+...+..+++++|++++
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 79 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 79 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence 478999999999999999999999999888888888665 4456788999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG--NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||+++++++..+..|+..+..... .++|+++|+||+|+...+++..++++++++.++++|+++||++|.||+++|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 159 (171)
T d2erxa1 80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 159 (171)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 9999999999999999988876543 67899999999999888889999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|++.+
T Consensus 160 l~~~~ 164 (171)
T d2erxa1 160 LLNLE 164 (171)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=215.84 Aligned_cols=166 Identities=28% Similarity=0.511 Sum_probs=146.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
+..+||+|+|++|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+||++|.+.+......+++.+|+++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL 81 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEE
Confidence 34689999999999999999999999988888887764 45667788999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
+|||.+++.|++.+..|+..+.... ....|+++|+||+|+...+.+..+++.++++.++++|++|||++|.||+++|..
T Consensus 82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~ 161 (171)
T d2erya1 82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE 161 (171)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence 9999999999999999998876654 457899999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8722 172 LSQRMLEK 179 (223)
Q Consensus 172 i~~~~~~~ 179 (223)
|++.+.++
T Consensus 162 l~~~i~k~ 169 (171)
T d2erya1 162 LVRVIRKF 169 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988644
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-35 Score=213.71 Aligned_cols=163 Identities=31% Similarity=0.556 Sum_probs=149.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|++|||||||+++|..+.+...+.++.+. .......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 6799999999999999999999999998888787764 445667789999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.++..+..|+..+..... +++|++||+||+|+...+.+..+++..+++.++++|+++||++|.|++++|..|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i 160 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence 9999999999999999998877543 678999999999998888889999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 173 SQRML 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
++++.
T Consensus 161 ~~~i~ 165 (167)
T d1kaoa_ 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=213.12 Aligned_cols=163 Identities=29% Similarity=0.499 Sum_probs=142.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
+.||+|+|++|+|||||+++|..+.+.+.+.+|.+.. ......+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 80 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence 5799999999999999999999999998888887744 456677889999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
||++++.||+.+..|.........+++|++||+||+|+.. .+.+..+++.++++.++. +|++|||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999988755554444556799999999999853 245778899999999985 899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (223)
|.||+++|+.+++++++
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999998763
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-34 Score=209.72 Aligned_cols=166 Identities=35% Similarity=0.667 Sum_probs=145.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC-CccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK-HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
+...+||+|+|+++||||||+++|..+.+... ..++.+.++....+..++..+.+.+|||+|++.+..++..+++++|+
T Consensus 3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~ 82 (170)
T d2g6ba1 3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 82 (170)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence 56789999999999999999999998887544 45566788888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
+++|||++++.++..+..|+..+........|+++++||.|+.....+..+++.++++.++++|+++||++|.|++++|.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~ 162 (170)
T d2g6ba1 83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 162 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999988888777899999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8722 171 ELSQRML 177 (223)
Q Consensus 171 ~i~~~~~ 177 (223)
+|++.+.
T Consensus 163 ~l~~~i~ 169 (170)
T d2g6ba1 163 AIAKELK 169 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9998875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-35 Score=218.85 Aligned_cols=171 Identities=34% Similarity=0.600 Sum_probs=152.5
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC----------eEEEEEEEeCCCcccccccc
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG----------KRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~ 81 (223)
+.+.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||+|++.+..++
T Consensus 2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~ 81 (186)
T d2f7sa1 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 81 (186)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence 56779999999999999999999999999888888888887766665432 44689999999999999999
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
..+++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+...+.+..+++.++++.++++|+++||+
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak 161 (186)
T d2f7sa1 82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 161 (186)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999999999999998766543 3568999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
+|.|++++|++|++.+.++.++
T Consensus 162 ~~~~i~e~f~~l~~~i~~k~~~ 183 (186)
T d2f7sa1 162 TGQNVEKAVETLLDLIMKRMEQ 183 (186)
T ss_dssp TTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-34 Score=214.57 Aligned_cols=163 Identities=28% Similarity=0.459 Sum_probs=142.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|++|||||||+++|..+.+...+.+|.+... ......++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 80 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 80 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence 479999999999999999999999999988888887544 5566678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhC-CcEEEecCC
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVG-AVHFHTSAK 160 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (223)
|||+++++||+.+..|+........++.|+++|+||+|+.. .+.+..+++.+++..++ ++|+++||+
T Consensus 81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999999999998755554444556799999999999853 34578899999999875 699999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRML 177 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~ 177 (223)
+|.||+++|+.++..++
T Consensus 161 ~~~~V~e~f~~l~~~~~ 177 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAAL 177 (191)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999998887654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-34 Score=210.78 Aligned_cols=162 Identities=44% Similarity=0.812 Sum_probs=151.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
.+||+++|++|+|||||+++|..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 68999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc---cccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK---QRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
||++++.+++.+..|+..+........|+++++||.|+.+ .+.+..+++.++++.++++|+++||++|.||+++|..
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~ 162 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888887777899999999999844 4678889999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|++++
T Consensus 163 i~~~i 167 (170)
T d1ek0a_ 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHh
Confidence 88654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-34 Score=210.34 Aligned_cols=163 Identities=30% Similarity=0.554 Sum_probs=148.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+|+|++|||||||+++|..+.+.+.+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|++|+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 579999999999999999999999999988888888665 4556778888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-CCcEEEecCCCCCCHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-GAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|||++++.+|+.+..|+..+.+.. .+++|+++|+||+|+.....+..++...++... +++|+++||++|.||+++|.+
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~ 160 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence 999999999999999999887654 467899999999999888888899999999874 689999999999999999999
Q ss_pred HHHHHH
Q psy8722 172 LSQRML 177 (223)
Q Consensus 172 i~~~~~ 177 (223)
|++++.
T Consensus 161 l~~~i~ 166 (167)
T d1c1ya_ 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998774
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-35 Score=217.20 Aligned_cols=161 Identities=29% Similarity=0.559 Sum_probs=142.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 68999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.||+.+..|+..+.+.. +++|+++|+||+|+..... .++...++...+++|+++||++|.|++++|.+|++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~ 159 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988765 4699999999999966543 34556788889999999999999999999999999
Q ss_pred HHHH
Q psy8722 175 RMLE 178 (223)
Q Consensus 175 ~~~~ 178 (223)
.++.
T Consensus 160 ~l~~ 163 (170)
T d1i2ma_ 160 KLIG 163 (170)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-34 Score=207.97 Aligned_cols=163 Identities=31% Similarity=0.567 Sum_probs=147.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+|+|++|||||||+++|.++.+...+.++.+..+.. .+...+..+.+.+||++|++.+...+..+++.++++++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii 80 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence 57999999999999999999999999998888888877654 45678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG-NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLEL 172 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 172 (223)
|||++++.+|+.+..|+..+.+... +++|+++|+||+|+. .+.+..++++++++.++++|+++||++|.|++++|.+|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i 159 (166)
T d1ctqa_ 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence 9999999999999999999887654 568999999999985 45667899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8722 173 SQRMLE 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
++++.+
T Consensus 160 ~~~i~~ 165 (166)
T d1ctqa_ 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-34 Score=208.41 Aligned_cols=164 Identities=41% Similarity=0.743 Sum_probs=146.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
-+||+++|++|||||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||||++.+..++..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHH
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLELSQ 174 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 174 (223)
||++++.+++.+..|+..+........|++++++|.|+.. +....+++.+++..++++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~ 160 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 160 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999998888888899999999999854 456788999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8722 175 RMLEK 179 (223)
Q Consensus 175 ~~~~~ 179 (223)
.+.++
T Consensus 161 ~i~~k 165 (166)
T d1g16a_ 161 LIQEK 165 (166)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=209.72 Aligned_cols=165 Identities=28% Similarity=0.545 Sum_probs=144.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+++.+||+|+|++|||||||+++|+.+.+...+.+|.+.. ....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence 5789999999999999999999999999998888888754 456677899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCcccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q psy8722 92 VLVYDITDEDSFEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQ------------RTVMQEDAEKYAQSVG-AVHFHT 157 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (223)
++|||++++++|+.+.. |...++. ...++|++||+||+|+... ......+...+++.++ ++|++|
T Consensus 81 ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~ 159 (183)
T d1mh1a_ 81 LICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (183)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred eeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence 99999999999999987 5555554 4567999999999998432 3456678888998887 699999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q psy8722 158 SAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 158 Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
||++|.||+++|..|++.++.
T Consensus 160 SAk~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 160 SALTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCcCHHHHHHHHHHHHcC
Confidence 999999999999999998753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=207.37 Aligned_cols=169 Identities=38% Similarity=0.704 Sum_probs=154.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
..+.+||+|+|++|||||||+++|.++.+...+.++.+..+....+.+++..+.+.+|||+|++.+..++..++.++|++
T Consensus 4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i 83 (177)
T d1x3sa1 4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 83 (177)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 46789999999999999999999999999999889999888888889999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
++|||++++.++..+..|+..+.+.. ....|+++++||.|.. .+.+..++++++++.++++++++||++|.|++++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~ 162 (177)
T d1x3sa1 84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887654 3468899999999974 467788999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQ 181 (223)
Q Consensus 171 ~i~~~~~~~~~ 181 (223)
+|++.+++...
T Consensus 163 ~l~~~l~~~p~ 173 (177)
T d1x3sa1 163 ELVEKIIQTPG 173 (177)
T ss_dssp HHHHHHHTSGG
T ss_pred HHHHHHccCcc
Confidence 99999987643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=207.01 Aligned_cols=165 Identities=23% Similarity=0.367 Sum_probs=142.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCC---ccccccccccccccCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAG---QERFHALGPIYYRMSN 89 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d 89 (223)
..+||+++|++|+|||||+++|....+. ....++.+.++....+.+++..+.+.+||+++ ++++ ++..+++++|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 4689999999999999999999966554 34456777788888888999999999999875 4444 4567889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEEM 168 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (223)
++|+|||++++.++..+..|+..+.... .+++|+++|+||+|+...+++..+++++++..++++|+++||++|.|++++
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~ 159 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 159 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence 9999999999999999999999887653 367999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 169 FLELSQRMLEKA 180 (223)
Q Consensus 169 ~~~i~~~~~~~~ 180 (223)
|..|++++..++
T Consensus 160 f~~l~~~i~~rr 171 (172)
T d2g3ya1 160 FEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcc
Confidence 999999987664
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-33 Score=205.97 Aligned_cols=166 Identities=39% Similarity=0.676 Sum_probs=133.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNI-AGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
-+||+++|++|||||||+++|.++.+.+.+.++.+.......... +...+.+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 589999999999999999999999998888888877766666554 3445678999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccc-cCCHHHHHHHHHHhC-CcEEEecCCCCCCHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQR-TVMQEDAEKYAQSVG-AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 167 (223)
|||++++.+|..+..|+..+..... .++|+++++||+|+...+ .+..+++++++..++ ++|+++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e 161 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 161 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence 9999999999999999998876542 478999999999997654 467788999999986 6899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8722 168 MFLELSQRMLEKA 180 (223)
Q Consensus 168 ~~~~i~~~~~~~~ 180 (223)
+|.+|++.++++.
T Consensus 162 ~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 162 AFEEIARSALQQN 174 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998775
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-32 Score=202.69 Aligned_cols=166 Identities=39% Similarity=0.675 Sum_probs=146.9
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCE
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNG 90 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (223)
...+-+||+|+|++|||||||+++|..+.+.+.+.++.+..........++..+.+.+||++|...+...+..++..+++
T Consensus 2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 81 (174)
T d1wmsa_ 2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 81 (174)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence 34567899999999999999999999999999999999998888888889999999999999999888889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCCCH
Q psy8722 91 AVLVYDITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNRGI 165 (223)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 165 (223)
++++||.+++.+++.+..|+..+..... ++.|+++|+||.|+.+ +.+..+++++++++.+ ++|+++||++|.||
T Consensus 82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence 9999999999999999999988876542 4689999999999954 6788999999998875 79999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRML 177 (223)
Q Consensus 166 ~~~~~~i~~~~~ 177 (223)
+++|++|+++++
T Consensus 161 ~e~f~~l~~~il 172 (174)
T d1wmsa_ 161 AAAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5e-33 Score=206.09 Aligned_cols=168 Identities=36% Similarity=0.638 Sum_probs=150.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+|+|.+|||||||+++|.++.+...+.+|.+.++........+..+.+.+||++|+..+...+..++..+|++++||
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 79999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCccccccCCHHHHHHHHHH-hCCcEEEecCCCCCCHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKMLG----NDICLTIAGNKIDLEKQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 170 (223)
|.++..++..+..|+..+..... .++|+++|+||+|+.+ +.+..++..+++.. .++++++|||++|.|++++|+
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~ 161 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ 161 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999988876542 4689999999999865 45567777777654 578999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 171 ELSQRMLEKAQEFD 184 (223)
Q Consensus 171 ~i~~~~~~~~~~~~ 184 (223)
+|++.++++..+.+
T Consensus 162 ~l~~~i~~~~~~~~ 175 (184)
T d1vg8a_ 162 TIARNALKQETEVE 175 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccc
Confidence 99999988766543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.3e-33 Score=202.39 Aligned_cols=160 Identities=36% Similarity=0.662 Sum_probs=144.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccCCEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA-LGPIYYRMSNGAV 92 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 92 (223)
+.+||+|+|++|||||||+++|..+.+...+.++.+..+......+.+....+.+||++|...+.. .+..+++++|++|
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 358999999999999999999999999999999999888888888999999999999999776654 4577899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCC---CCCHHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKM---NRGIEEM 168 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~ 168 (223)
+|||++++.+|+.+..|+..+.+.. .+++|++||+||+|+...+++..++++++++.++++|+++||++ ++||+++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~ 160 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 160 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence 9999999999999999999987764 46799999999999988888999999999999999999999987 4699999
Q ss_pred HHHHH
Q psy8722 169 FLELS 173 (223)
Q Consensus 169 ~~~i~ 173 (223)
|.+|+
T Consensus 161 F~~lA 165 (165)
T d1z06a1 161 FMTLA 165 (165)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98773
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.7e-33 Score=205.37 Aligned_cols=163 Identities=22% Similarity=0.432 Sum_probs=142.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEE
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLV 94 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (223)
++||+++|++|||||||+++|..+.+...+.+|.+... .....+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 80 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence 57999999999999999999999999988888876544 45566788999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc------------cccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 95 YDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK------------QRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
||+++++||+.+..|+........++.|+++||||+|+.. .+.+..++..++++.++. .|+||||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160 (179)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999999988755554444456899999999999853 456788999999999875 899999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q psy8722 162 NR-GIEEMFLELSQRMLE 178 (223)
Q Consensus 162 ~~-~i~~~~~~i~~~~~~ 178 (223)
|. +++++|+.++..++.
T Consensus 161 ~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 161 SENSVRDIFHVATLACVN 178 (179)
T ss_dssp BHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 98 599999999998874
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-31 Score=196.70 Aligned_cols=166 Identities=18% Similarity=0.349 Sum_probs=139.6
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+-+.+||+++|++|||||||++++.++.+... .++.+..+ .+.+.+++..+.+.+|||+|+..+ .+++.+|++
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ 74 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 74 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence 34689999999999999999999998888543 45554444 566788999999999999998754 478899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCcc--ccccCCHHHHHHHHHH-hCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKKML---GNDICLTIAGNKIDLE--KQRTVMQEDAEKYAQS-VGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 165 (223)
|+|||++++.||+.+..|+..+.... ...+|+++|+||.|+. ..+.+..+++++++.. ++++|++|||+++.|+
T Consensus 75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence 99999999999999999999887654 3567999999988874 4566778888888655 5679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8722 166 EEMFLELSQRMLEKAQEFD 184 (223)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~ 184 (223)
+++|..+++.++..+.+.+
T Consensus 155 ~~~F~~l~~~i~~~~~~~~ 173 (175)
T d2bmja1 155 DRVFQEVAQKVVTLRKQQQ 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 9999999999998877654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.97 E-value=6.1e-31 Score=191.27 Aligned_cols=156 Identities=25% Similarity=0.324 Sum_probs=127.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|++|+|||||+++|..+.+.+.+.+|.+.++. .+..++ +.+.+||+||++.+...+..++.+++++++
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 76 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 76 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence 4799999999999999999999999998888888876653 344554 789999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCCCHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 167 (223)
|||+++..++.....|+..+... ..+++|+++|+||.|+.+.. ...+..+.. ...+++++++||++|.|+++
T Consensus 77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e 154 (164)
T d1zd9a1 77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 154 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence 99999999999998877766443 34679999999999986543 233322222 23345789999999999999
Q ss_pred HHHHHHHH
Q psy8722 168 MFLELSQR 175 (223)
Q Consensus 168 ~~~~i~~~ 175 (223)
+|++|++.
T Consensus 155 ~~~~l~~~ 162 (164)
T d1zd9a1 155 TLQWLIQH 162 (164)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.97 E-value=1.7e-29 Score=183.61 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=123.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|++|||||||+++|.+..+. ...+|.+... ..+..++ +.+.+||++|++.+...+..++..++++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 75 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence 4789999999999999999999876653 4456665443 3445555 789999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHH-HHcCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHHH
Q psy8722 94 VYDITDEDSFEKVKNWVKELK-KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 167 (223)
|||+++..++.....|+.... .....++|+++|+||.|+.+... .++...... ..++++++|||++|+|+.+
T Consensus 76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 153 (165)
T d1ksha_ 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 153 (165)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence 999999999988777655443 33346799999999999965443 333333221 2234789999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
+|++|++++..
T Consensus 154 ~~~~l~~~i~~ 164 (165)
T d1ksha_ 154 GIDWLLDDISS 164 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.96 E-value=1.1e-29 Score=186.40 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=124.6
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCC
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSN 89 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (223)
..+++++||+++|++|||||||+++|.++.+... .++.+.+ ...+...+ +.+.+||++|++.+...+..++..+|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~--~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 85 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD 85 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee--EEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence 4457889999999999999999999998776432 3444433 34445555 78999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHH-----HHhCCcEEEecCCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYA-----QSVGAVHFHTSAKMNR 163 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 163 (223)
++|+|||+++..++..+..|+..+... ...++|+++++||.|+..... .....+.. ...+++++++||++|+
T Consensus 86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~ 163 (176)
T d1fzqa_ 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (176)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 999999999999999998877665543 335789999999999965432 23332222 2234578999999999
Q ss_pred CHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQR 175 (223)
Q Consensus 164 ~i~~~~~~i~~~ 175 (223)
|++++|+||++.
T Consensus 164 gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 164 GVQDGMNWVCKN 175 (176)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHhc
Confidence 999999999875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.96 E-value=2.2e-30 Score=191.35 Aligned_cols=167 Identities=22% Similarity=0.259 Sum_probs=126.3
Q ss_pred CCCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q psy8722 7 DRNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYR 86 (223)
Q Consensus 7 ~~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (223)
+..-...+++||+++|++|||||||+++|....+.. ..+|.+... .....++ +.+.+||++|++.+...+..++.
T Consensus 9 ~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~ 83 (182)
T d1moza_ 9 DKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYA 83 (182)
T ss_dssp GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTT
T ss_pred HHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhc
Confidence 344567889999999999999999999998666643 345555543 3334444 78899999999999999999999
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecCC
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSAK 160 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 160 (223)
+++++++|+|++++.++.....|+..... ....+.|+++++||+|+.+.. ..+++.+. +...++++++|||+
T Consensus 84 ~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~ 161 (182)
T d1moza_ 84 DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAI 161 (182)
T ss_dssp TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred cceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 99999999999999999998887765443 334578999999999986432 33333332 22334578999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (223)
+|+|++++|++|++.+.+++
T Consensus 162 ~g~gv~e~~~~l~~~i~~~~ 181 (182)
T d1moza_ 162 KGEGITEGLDWLIDVIKEEQ 181 (182)
T ss_dssp GTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999987653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.96 E-value=2.3e-29 Score=184.40 Aligned_cols=158 Identities=18% Similarity=0.306 Sum_probs=122.9
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
+.+.+||+++|++|||||||+++|..+.+.. ..+|.+... ....... +.+.+||+||++.+...+..++++++++
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i 83 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 83 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EEeeccc--eeeEEecCCCcchhhhHHHhhhcccceE
Confidence 4678999999999999999999999766543 234444433 3334444 7889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCccccccCCHHHHHHH-----HHHhCCcEEEecCCCCCCH
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELKK-MLGNDICLTIAGNKIDLEKQRTVMQEDAEKY-----AQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i 165 (223)
|+|+|+++..++..+..|+..... ......|+++++||+|+.+.. ...++... +...++.++++||++|+||
T Consensus 84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc--cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence 999999999999999887766544 334579999999999986543 22332222 2223456899999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 166 EEMFLELSQRM 176 (223)
Q Consensus 166 ~~~~~~i~~~~ 176 (223)
+++|++|.+.+
T Consensus 162 ~e~~~~l~~~~ 172 (173)
T d1e0sa_ 162 YEGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.94 E-value=6.7e-28 Score=173.69 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=120.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEE
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (223)
+||+++|++|||||||+++|.++.+.......... ....+...+.+.+||++|...+......++..++++++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 75 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence 69999999999999999999977775543333222 1223344578999999999999888999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccC---CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHH
Q psy8722 96 DITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTV---MQEDAEKYAQSVGAVHFHTSAKMNRGIEEMFLE 171 (223)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (223)
|..++.++..+..|+..+... .....|+++++||.|+.+.... .......++...+++++++||++|+|++++|++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~ 155 (160)
T d1r8sa_ 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (160)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence 999999999988877776543 3356899999999998654321 111122233445668999999999999999999
Q ss_pred HHHHH
Q psy8722 172 LSQRM 176 (223)
Q Consensus 172 i~~~~ 176 (223)
|++++
T Consensus 156 l~~~l 160 (160)
T d1r8sa_ 156 LSNQL 160 (160)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.92 E-value=2.2e-24 Score=157.81 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=116.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+++||+|+|.+|||||||++++.+..+... .++.+.. .......+ +.+.+||+++.+.....+..++..+++++
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 87 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 87 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence 6779999999999999999999998776533 2333322 23333444 67899999999998888999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCccccccCCHHHHHHHHH-----HhCCcEEEecCCCCCCHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKELKKM-LGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ-----SVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 166 (223)
+++|.++..++.....+....... .....|+++|+||.|+.... ...+..+... ..+++++++||++|+|++
T Consensus 88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~ 165 (177)
T d1zj6a1 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 165 (177)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence 999999999988877655444332 33678999999999986543 2333333332 234579999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
++|++|.+++
T Consensus 166 e~~~~L~~~l 175 (177)
T d1zj6a1 166 QGLEWMMSRL 175 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.92 E-value=2e-24 Score=156.38 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=121.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
.+++||+++|++|||||||+++|.++.+... .++.+.. ......++ +.+.+||.+|.+.+.......+..+++++
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 77 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee--eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhh
Confidence 3568999999999999999999998877543 3444332 23334444 67889999999999888889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCccccccCCHHHHH----HHHHHhCCcEEEecCCCCCCHHH
Q psy8722 93 LVYDITDEDSFEKVKNWVKE-LKKMLGNDICLTIAGNKIDLEKQRTVMQEDAE----KYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
+++|+.+..++.....+... +........|+++++||.|+...... .+... .++...+++++++||++|.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 156 (169)
T d1upta_ 78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDE 156 (169)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence 99999998888777764444 33334467899999999998654331 12222 23344556899999999999999
Q ss_pred HHHHHHHHHHH
Q psy8722 168 MFLELSQRMLE 178 (223)
Q Consensus 168 ~~~~i~~~~~~ 178 (223)
+|++|.+.+.+
T Consensus 157 ~~~~l~~~l~~ 167 (169)
T d1upta_ 157 AMEWLVETLKS 167 (169)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999887743
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=8.8e-25 Score=162.17 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=115.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|..|||||||+++|....+++. +. ....+.... +.+.+||++|++.+...+..+++.++++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~ 71 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence 579999999999999999999987666433 22 122334444 789999999999999999999999999999
Q ss_pred EEECCCHHHH-----------HHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc---------------ccCCHHHHHHH-
Q psy8722 94 VYDITDEDSF-----------EKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ---------------RTVMQEDAEKY- 146 (223)
Q Consensus 94 v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~- 146 (223)
|+|+++..++ +....|...+......+.|+++++||.|+... ......+....
T Consensus 72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
T d1svsa1 72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 151 (195)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence 9999987655 33444666665555677999999999996211 11122222211
Q ss_pred ----HHH------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 147 ----AQS------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 147 ----~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
... ..+.+++|||+++.||+++|+.+.+.++++
T Consensus 152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 111 123467899999999999999998887764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=4.3e-25 Score=164.50 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=124.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+++||+++|..|||||||+++|..+.+ .+.||.|.++.. +.. ..+.+.+||++|++.+...+..+++.++++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 74 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--FDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMF 74 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--EEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE--Eec--cceeeeeccccccccccccccccccccceeeE
Confidence 579999999999999999999996666 356888876533 333 34789999999999999999999999999999
Q ss_pred EEECCCH-----------HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc----------------cCCHHHHHHH
Q psy8722 94 VYDITDE-----------DSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR----------------TVMQEDAEKY 146 (223)
Q Consensus 94 v~d~~~~-----------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~~ 146 (223)
++|.++. ..++....|...+......+.|+++++||.|+...+ +...+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (200)
T d2bcjq2 75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 154 (200)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence 9999875 346667778888877766789999999999973211 1122333333
Q ss_pred HHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q psy8722 147 AQS----------VGAVHFHTSAKMNRGIEEMFLELSQRMLEK 179 (223)
Q Consensus 147 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 179 (223)
... ..+.++++||++|.|+.++|+.+.+.+++.
T Consensus 155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 221 123468999999999999999998888765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.5e-23 Score=153.72 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=108.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL--------GPIY 84 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (223)
+.-.|+|+|.+|||||||+|+|++.... ....++.+...........+ ..+.+|||||....... ...+
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 81 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence 4447999999999999999999966542 33344444555455555555 56889999996543222 2344
Q ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC-CcEEEecCCCCC
Q psy8722 85 YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG-AVHFHTSAKMNR 163 (223)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (223)
+.++|++|+|+|++++..... ..|...++. ...+.|+++|+||+|+.... .+....+...++ ..++++||+++.
T Consensus 82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 82 LADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER 156 (178)
T ss_dssp TSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred cccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence 688999999999988644322 334444443 33468999999999985432 233444445555 478899999999
Q ss_pred CHHHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQRM 176 (223)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (223)
|+++++++|++.+
T Consensus 157 gi~~L~~~i~~~l 169 (178)
T d1wf3a1 157 QVAELKADLLALM 169 (178)
T ss_dssp HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.2e-22 Score=146.22 Aligned_cols=151 Identities=25% Similarity=0.333 Sum_probs=115.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYD 96 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (223)
||+++|++|||||||+++|.++.+. ...++.+... ......+ +...+||++|...+......++..++++++++|
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 76 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence 7999999999999999999987765 3345544333 3333444 568899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCccccccCCHHHHHHHHH------------HhCCcEEEecCCCCC
Q psy8722 97 ITDEDSFEKVKNWVKELKKML-GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQ------------SVGAVHFHTSAKMNR 163 (223)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~ 163 (223)
.++..++.....|+....... ..+.|+++++||.|+.... ...+..+... ...+.+++|||++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~ 154 (166)
T d2qtvb1 77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 154 (166)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence 999999888887776665543 3578999999999985432 3333332221 112368999999999
Q ss_pred CHHHHHHHHHH
Q psy8722 164 GIEEMFLELSQ 174 (223)
Q Consensus 164 ~i~~~~~~i~~ 174 (223)
|++++|+||.+
T Consensus 155 Gv~e~~~~l~~ 165 (166)
T d2qtvb1 155 GYLEAFQWLSQ 165 (166)
T ss_dssp SHHHHHHHHTT
T ss_pred CHHHHHHHHhC
Confidence 99999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.4e-24 Score=153.95 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=111.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA--------LGPIYYR 86 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 86 (223)
+||+++|++|||||||+|+|++.... ....++.+.......+...+ ..+.+||++|...... ....++.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE 79 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence 79999999999999999999965543 34445555555555566666 5677899999543321 1234578
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.+|++++++|..+..++.....|...+... ..+.|+++|+||+|+...... +.+..+.+++++||+++.|++
T Consensus 80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~ 151 (161)
T d2gj8a1 80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD 151 (161)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence 899999999999988777777666655544 346899999999998544321 112345689999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 167 EMFLELSQRM 176 (223)
Q Consensus 167 ~~~~~i~~~~ 176 (223)
+++++|.+.+
T Consensus 152 ~L~~~l~~~l 161 (161)
T d2gj8a1 152 VLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=1.8e-22 Score=150.24 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=109.3
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEEE
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVL 93 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (223)
+.+||+++|.+|||||||+++|. +...+.||.|... ..+..++ ..+.+||++|++.+...+..+++.++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~ 73 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF 73 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence 35899999999999999999994 4556678888654 3455555 778999999999999999999999999999
Q ss_pred EEECCCHHH----------HHHHHH-HHHHHHHHcCCCCeEEEEEeCCCcccc----------------ccCCHHHHHHH
Q psy8722 94 VYDITDEDS----------FEKVKN-WVKELKKMLGNDICLTIAGNKIDLEKQ----------------RTVMQEDAEKY 146 (223)
Q Consensus 94 v~d~~~~~s----------~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~ 146 (223)
++|.++..+ +..... |...+......+.|+++++||.|+... .....+.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (200)
T d1zcba2 74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 153 (200)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence 999988532 222222 222333333467999999999997321 11122333333
Q ss_pred HHHh-----------CCcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 147 AQSV-----------GAVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 147 ~~~~-----------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
.... .+.++++||+++.||.++|+.+.+.+++..
T Consensus 154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~ 198 (200)
T d1zcba2 154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 198 (200)
T ss_dssp HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence 2221 234678999999999999999988877653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.8e-22 Score=148.16 Aligned_cols=157 Identities=17% Similarity=0.069 Sum_probs=103.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----cc---cccccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH----AL---GPIYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~~~~~~~~d 89 (223)
+|+++|.+|||||||+|+|++.........+.+.+........ .....+.+|||||..... .. ....+..++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 81 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeee-cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999865543333333333333322222 222467899999943211 11 123457889
Q ss_pred EEEEEEECCCHH--HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 90 GAVLVYDITDED--SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 90 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
++++++|..... +......|+...... ..++|+++|+||+|+..... .++..+.+...+.+++.+||++|.|+++
T Consensus 82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~ 158 (180)
T d1udxa2 82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA 158 (180)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence 999999987642 333333343332211 12479999999999865432 3455566667788999999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 168 MFLELSQRML 177 (223)
Q Consensus 168 ~~~~i~~~~~ 177 (223)
+++.|.+.+.
T Consensus 159 L~~~i~~~l~ 168 (180)
T d1udxa2 159 LKEALHALVR 168 (180)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.88 E-value=3.9e-22 Score=146.33 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=113.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGA 91 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (223)
.++..||+++|++|||||||+++|.+..+... .++.+... ..+..++ ..+.+||+.++..+...+..++...+++
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI 84 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhccccee
Confidence 47789999999999999999999997776533 34444333 3345555 4677899999999988899999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHH-HHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----------------CCc
Q psy8722 92 VLVYDITDEDSFEKVKNWVKELK-KMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----------------GAV 153 (223)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~ 153 (223)
++++|+.+...+.....++.... .....+.|+++++||.|+... ....++.+..... +++
T Consensus 85 ~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
T d1f6ba_ 85 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLE 162 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred eeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence 99999999988877766444333 333467999999999997543 3344444443221 235
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH
Q psy8722 154 HFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++|||++|+|++++|+||++.+
T Consensus 163 ~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 163 VFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHhh
Confidence 88999999999999999998753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.88 E-value=2.4e-22 Score=147.36 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=105.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCc-------cccceeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHI-------TTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYY 85 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (223)
.+.+||+++|++|+|||||+|+|++........ ...+.......+..++ ..+.++|++|+..+.......+
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l 80 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 80 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence 467899999999999999999998533221111 1111122222233444 5677889999998888888888
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHH----hCCcEEEecC
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQS----VGAVHFHTSA 159 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa 159 (223)
..+|++++|+|+.+........ ....+.. .++|+++|+||+|+....... .+...++... .+.+++.+||
T Consensus 81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 81 DIIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp TSCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hhccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 9999999999999864332222 2222222 368999999999986543211 1222232222 1357899999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy8722 160 KMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (223)
++|+|++++++.|.+.+.+
T Consensus 157 ~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 157 KTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhcCCc
Confidence 9999999999999877654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.7e-22 Score=145.99 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=99.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------HALGPIYYR 86 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 86 (223)
.|+|+|++|||||||+|+|++.... ....+..+.......+...+ ..+.+||++|.... ......++.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 79 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 79 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence 6999999999999999999865443 23333333333334444455 56889999993221 112233457
Q ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 87 MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.+|+++++.|.++...... ..|+..+... ++|+++|+||+|+.... ..+...++.......++++||++|.|++
T Consensus 80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD 153 (171)
T ss_dssp TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence 8999999999887544332 3455555543 57999999999985432 1222233333333467999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8722 167 EMFLELSQRMLEKA 180 (223)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (223)
+++++|++.+.++.
T Consensus 154 ~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 154 TMLETIIKKLEEKG 167 (171)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCC
Confidence 99999998876653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.3e-21 Score=142.80 Aligned_cols=163 Identities=18% Similarity=0.146 Sum_probs=105.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc----------
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---------- 78 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------- 78 (223)
++....+||+++|++|+|||||+|+|++.... ....++.+.......+.+++ ..+.++|+||.....
T Consensus 3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~ 80 (186)
T d1mkya2 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY 80 (186)
T ss_dssp CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence 44566899999999999999999999965432 23233333333344455666 456788999954321
Q ss_pred --cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh-----C
Q psy8722 79 --ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV-----G 151 (223)
Q Consensus 79 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~ 151 (223)
......++.+|++++|+|++.+.. .....++..+.. .+.|+++++||+|+........++..+..... .
T Consensus 81 ~~~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T d1mkya2 81 SNYRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY 156 (186)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred hhHHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence 122334578999999999987533 222334444443 36899999999998655444445444443332 2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
.+++.+||++|.|+++++++|.+.+..
T Consensus 157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 157 SPLIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999776543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.2e-21 Score=140.85 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=101.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH---------ALGPIYY 85 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 85 (223)
+||+++|.+|||||||+|+|++... .....++.+.......+...+ ..+.+|||||..... ......+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~ 78 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 78 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence 6999999999999999999985443 334444555544455566666 568899999943211 1112235
Q ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q psy8722 86 RMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGI 165 (223)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (223)
..+|++++|+|++++.......-+. .. ...++++++||.|+.... ..++..+. ...+.+++.+||++|.|+
T Consensus 79 ~~ad~ii~v~d~~~~~~~~~~~~~~-----~~-~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi 149 (160)
T d1xzpa2 79 EKADIVLFVLDASSPLDEEDRKILE-----RI-KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL 149 (160)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHH-----HH-TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred HhCCEEEEEEeCCCCcchhhhhhhh-----hc-ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence 7899999999999876554432221 11 246899999999986543 33333322 223468999999999999
Q ss_pred HHHHHHHHHH
Q psy8722 166 EEMFLELSQR 175 (223)
Q Consensus 166 ~~~~~~i~~~ 175 (223)
++++++|.++
T Consensus 150 ~~L~~~I~ke 159 (160)
T d1xzpa2 150 EKLEESIYRE 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=1.8e-21 Score=143.06 Aligned_cols=150 Identities=21% Similarity=0.196 Sum_probs=99.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc---------------cccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF---------------HALG 81 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~ 81 (223)
.|+++|++|||||||+|+|++........++++.+.. .+...+ +.+|||||.... ....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--cccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence 5899999999999999999987766555565555432 233333 568899994211 1112
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHH----------HHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhC
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVK----------NWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVG 151 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (223)
...++.+|++++|+|........... .++..+. ..++|+++|+||+|+..... .....+....+
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~ 149 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE 149 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence 33457899999999997653322211 1222222 23689999999999754322 22222233332
Q ss_pred -------CcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 152 -------AVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 152 -------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
..++.+||++|.|++++++.|.+.+.+
T Consensus 150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence 247889999999999999999888765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=2.5e-21 Score=146.48 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=115.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccccccCCEEE
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAV 92 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (223)
++.+||+++|..|||||||++++..+.+ .||.|... ..+.+++ +.+.+||++|++.++..+..++.++++++
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii 75 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII 75 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence 4678999999999999999999975433 46777543 4455666 78999999999999999999999999999
Q ss_pred EEEECCCHH-----------HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc----C-------------------
Q psy8722 93 LVYDITDED-----------SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT----V------------------- 138 (223)
Q Consensus 93 ~v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~------------------- 138 (223)
+|+|.++.. ..+....|...+......++|++|++||+|+...+. .
T Consensus 76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~ 155 (221)
T d1azta2 76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT 155 (221)
T ss_dssp EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence 999998642 223333344444443345799999999999732210 0
Q ss_pred -------CHHHHHHH-----HHHhC--------CcEEEecCCCCCCHHHHHHHHHHHHHHHH
Q psy8722 139 -------MQEDAEKY-----AQSVG--------AVHFHTSAKMNRGIEEMFLELSQRMLEKA 180 (223)
Q Consensus 139 -------~~~~~~~~-----~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 180 (223)
..+++.++ ...+. +.++++||+++.++..+|+.+.+.|++..
T Consensus 156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~ 217 (221)
T d1azta2 156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 217 (221)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence 01222222 22111 23568999999999999999888877653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=6.9e-20 Score=137.05 Aligned_cols=118 Identities=23% Similarity=0.273 Sum_probs=86.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccCCEEEEEE
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH-ALGPIYYRMSNGAVLVY 95 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~ 95 (223)
+|+++|++|||||||+++|++..+... .++.+.++....+ .++..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~ 79 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence 699999999999999999998777654 3555555433332 24455789999999998775 45677889999999999
Q ss_pred ECCCHHHH-HHHHHHHH-HHHHH--cCCCCeEEEEEeCCCccccc
Q psy8722 96 DITDEDSF-EKVKNWVK-ELKKM--LGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 96 d~~~~~s~-~~~~~~~~-~~~~~--~~~~~p~ivv~nK~Dl~~~~ 136 (223)
|+++..++ .....|+. .+... ....+|++|++||+|+....
T Consensus 80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 99997653 44444443 33322 23568999999999997544
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.83 E-value=1.1e-20 Score=143.60 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=98.7
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCcccccee--EEEEE--------------EEECCeEEEEEEEeCCCcccccccc
Q psy8722 18 VVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQAS--FLNKK--------------LNIAGKRLNLAIWDTAGQERFHALG 81 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (223)
|+|+|++++|||||+++|+..........+.+.. ..... ..+......+.++||||+..|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 9999999999999999998433221111111111 10000 0112223467788999999998888
Q ss_pred ccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--------------------HH
Q psy8722 82 PIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--------------------QE 141 (223)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--------------------~~ 141 (223)
...+..+|++|+|+|+.+.-..... ..+..+.. .++|+++++||+|+....... ..
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence 8888999999999999875433332 22222332 368999999999985432211 00
Q ss_pred HHHHHHH---Hh---------------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 142 DAEKYAQ---SV---------------GAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 142 ~~~~~~~---~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
...+... .. ..+++.+||.+|.|++++++.|.....+
T Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111111 11 1357899999999999999888775543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.83 E-value=4.1e-20 Score=137.17 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=105.7
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhhCCCCC---CCcccccee--EEEEEEE-------------------ECCeEEEEE
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVEDKFNE---KHITTLQAS--FLNKKLN-------------------IAGKRLNLA 67 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~--~~~~~~~-------------------~~~~~~~~~ 67 (223)
.++.+||+++|+.++|||||+++|++..... ....+.+.+ +...... .......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 3678999999999999999999998532211 111111111 1111111 011235688
Q ss_pred EEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHH
Q psy8722 68 IWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEK 145 (223)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~ 145 (223)
++|+||+..|.......+..+|++++|+|+.+........+.+..+.... ..++++++||+|+.+.... ..+...+
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence 88999999998888888889999999999998643233333333444332 2357888999998654321 1223334
Q ss_pred HHHHhC---CcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 146 YAQSVG---AVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 146 ~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
+....+ ++++.+||++|+|++++++.|.+.
T Consensus 160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~ 192 (195)
T d1kk1a3 160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDF 192 (195)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 443332 578999999999999999888764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=1.5e-20 Score=138.30 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=96.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccc----ccc---cccccCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA----LGP---IYYRMSN 89 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~---~~~~~~d 89 (223)
+|+|+|++|||||||+|+|++........++.+.+.......+.+. ..+.+|||||...... ... ..+..++
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999865543333333333333333333221 3577899999532111 111 2235688
Q ss_pred EEEEEEECCCHHHHHHHHH--HHHHHHHHc---CCCCeEEEEEeCCCccccccCCHHHHHHHHHHh--CCcEEEecCCCC
Q psy8722 90 GAVLVYDITDEDSFEKVKN--WVKELKKML---GNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV--GAVHFHTSAKMN 162 (223)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~--~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~ 162 (223)
.++++++............ +........ ..++|+++|+||+|+.+.. +..+.+...+ +.+++.+||++|
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g 157 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 157 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence 8988887765432222221 111112221 2368999999999986432 2333344433 568899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy8722 163 RGIEEMFLELSQRM 176 (223)
Q Consensus 163 ~~i~~~~~~i~~~~ 176 (223)
.|++++++.|.+.+
T Consensus 158 ~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 158 EGLRELLFEVANQL 171 (185)
T ss_dssp STTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=1.8e-19 Score=133.52 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=90.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC--CCCccccceeEEEEEEEECCeEEEEEEEeCCCcccc-------------cc
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFN--EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERF-------------HA 79 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~ 79 (223)
-.+|+|+|++|||||||+|+|++.... ....++.+.+.. ...... .+.+.|++|.... ..
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--EEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecc--cccccc---cceEEEEEeeccccccccccchhhhHHh
Confidence 348999999999999999999965432 222223332222 222222 2334566662211 11
Q ss_pred ccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHh----CCcEE
Q psy8722 80 LGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSV----GAVHF 155 (223)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~ 155 (223)
.....+..++++++++|+.++.. .....+++.+... ++|+++|+||+|+...... .+....+...+ ..+++
T Consensus 98 ~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 172 (195)
T d1svia_ 98 TYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEE
T ss_pred hhhccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEE
Confidence 11223456799999999986532 2223444455443 6899999999998543321 22233333333 34789
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q psy8722 156 HTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 156 ~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.+||++|.|+++++++|.+.+
T Consensus 173 ~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998775
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=8.7e-19 Score=130.87 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCC---Cccccc--eeEEEEEEEE------------------------CC
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEK---HITTLQ--ASFLNKKLNI------------------------AG 61 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~ 61 (223)
...+.+||+++|+.++|||||+++|++...... ...... .......... ..
T Consensus 4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T d2qn6a3 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK 83 (205)
T ss_dssp CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence 346789999999999999999999985322110 000000 0000000000 11
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM-- 139 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-- 139 (223)
....+.++|+|||..|.......+..+|++|+|+|+.+.-.-...++.+..+... .-.|++|++||+|+.......
T Consensus 84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~ 161 (205)
T d2qn6a3 84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQ 161 (205)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHH
Confidence 2235788899999999888777788999999999998753222222222223332 124888999999985443211
Q ss_pred HHHHHHHHHHh---CCcEEEecCCCCCCHHHHHHHHHHH
Q psy8722 140 QEDAEKYAQSV---GAVHFHTSAKMNRGIEEMFLELSQR 175 (223)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~ 175 (223)
.....++.... +++++.+||++|.|++++++.|...
T Consensus 162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ 200 (205)
T d2qn6a3 162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 200 (205)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence 12222222222 3579999999999999999887654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.78 E-value=2.6e-19 Score=132.41 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=102.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC----------------CCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED----------------KFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (223)
++.+||+++|+.++|||||+++|+.. ....+...+++.+.....+..++ ..+.++||||+..
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~ 78 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHAD 78 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHH
Confidence 36799999999999999999998631 11122223333343334444445 4566779999999
Q ss_pred cccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC---CHHHHHHHHHHhC--
Q psy8722 77 FHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV---MQEDAEKYAQSVG-- 151 (223)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 151 (223)
|.......+..+|++++|+|+.+...- +-.+.+..+... ...|++|++||+|+...... ...++..++...+
T Consensus 79 f~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 155 (196)
T d1d2ea3 79 YVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (196)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCC
Confidence 988888888999999999999985332 222333333332 13578899999998543221 1123445555454
Q ss_pred ---CcEEEecCCCC----------CCHHHHHHHHHH
Q psy8722 152 ---AVHFHTSAKMN----------RGIEEMFLELSQ 174 (223)
Q Consensus 152 ---~~~~~~Sa~~~----------~~i~~~~~~i~~ 174 (223)
++++.+|+++| .++.++++.|.+
T Consensus 156 ~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~ 191 (196)
T d1d2ea3 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (196)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence 46899999887 366666655433
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.4e-17 Score=121.26 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=101.7
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCCC-CCCccccceeEEEEEEEECCeEEEEEEEeCCCccc---------cccccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKFN-EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER---------FHALGP 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~ 82 (223)
.+--.|+|+|.+|||||||+|+|++.... ....++............+. ..+..||++|... ......
T Consensus 3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T d1egaa1 3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 80 (179)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence 34457999999999999999999965543 23333333333333333444 3456678887331 122233
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCC-cEEEecCCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGA-VHFHTSAKM 161 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (223)
.....+++++++.|..+.... ...+...+. ....|.++++||.|+.............+...++. +++.+||++
T Consensus 81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 155 (179)
T ss_dssp SCCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cchhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence 345667888899998764322 222222222 23578899999999765544334555556666664 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8722 162 NRGIEEMFLELSQRM 176 (223)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (223)
|.|++++++.|.+.+
T Consensus 156 g~gi~~L~~~i~~~l 170 (179)
T d1egaa1 156 GLNVDTIAAIVRKHL 170 (179)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=3.1e-18 Score=127.54 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=94.0
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC--CC---------------CCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED--KF---------------NEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
++++||+++|+.++|||||+++|+.. .. +++....++.+.....+.+++. .+.|+||||+.
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~--~i~iiDtPGh~ 78 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHA 78 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe--EEEEEeCCCch
Confidence 46799999999999999999999621 00 1111124455555556666675 45677999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCccccccC---CHHHHHHHHHHhC
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDIC-LTIAGNKIDLEKQRTV---MQEDAEKYAQSVG 151 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 151 (223)
.|.......+..+|++|+|+|+.+....+..+-|.. +.. .++| +++++||+|+.+.... ..+++..+...++
T Consensus 79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~ 154 (204)
T d2c78a3 79 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154 (204)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence 998888888899999999999998655444333332 322 2565 7778999998543221 1233444444444
Q ss_pred -----CcEEEecCC
Q psy8722 152 -----AVHFHTSAK 160 (223)
Q Consensus 152 -----~~~~~~Sa~ 160 (223)
++++..|+.
T Consensus 155 ~~~~~i~~i~~sa~ 168 (204)
T d2c78a3 155 FPGDEVPVIRGSAL 168 (204)
T ss_dssp SCTTTSCEEECCHH
T ss_pred CCcccceeeeeech
Confidence 356777764
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.72 E-value=5.4e-17 Score=122.02 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=99.1
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHhh--CCCCC-------------------------------CCccccceeEEEE
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYVE--DKFNE-------------------------------KHITTLQASFLNK 55 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-------------------------------~~~~~~~~~~~~~ 55 (223)
.++.+..+||+++|+.++|||||+.+|+. +.... ....+.+.+....
T Consensus 3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 82 (222)
T d1zunb3 3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 82 (222)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence 45567899999999999999999999962 22111 0011122222233
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEEeCCCccc
Q psy8722 56 KLNIAGKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDI-CLTIAGNKIDLEK 134 (223)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 134 (223)
.+...+ ..+.++|+||+..|..........+|++|+|+|+.+...-+.. +.+..+.. .++ .+++++||+|+.+
T Consensus 83 ~~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~---~gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 83 YFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASL---LGIKHIVVAINKMDLNG 156 (222)
T ss_dssp EEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEEECTTTTT
T ss_pred EEeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHH---cCCCEEEEEEEcccccc
Confidence 334445 4567779999999988888888999999999999885433222 22222222 244 4788999999865
Q ss_pred cccCCH----HHHHHHHHHhCC-----cEEEecCCCCCCHHH
Q psy8722 135 QRTVMQ----EDAEKYAQSVGA-----VHFHTSAKMNRGIEE 167 (223)
Q Consensus 135 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 167 (223)
..+... +++..++...++ +++.+||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 332211 234455555554 578999999999843
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.2e-17 Score=124.59 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=81.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccccccccccc----cccCC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALGPIY----YRMSN 89 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d 89 (223)
++.+|+|+|++|||||||+|+|++..+. ++++.+.....+..++ ..+.+||+||++.+...+..+ ...++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~ 75 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 75 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence 4568999999999999999999987654 3343333333333334 567899999988765554433 35568
Q ss_pred EEEEEEECCC-HHHHHHHHHHH----HHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 90 GAVLVYDITD-EDSFEKVKNWV----KELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 90 ~~i~v~d~~~-~~s~~~~~~~~----~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
.+++++|+.+ ..++.....|+ ..+......++|+++++||+|+....
T Consensus 76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 8899998765 44455554444 44455566789999999999986543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=6.4e-16 Score=119.12 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=82.0
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh--CCCC----------------CCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE--DKFN----------------EKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
+--||+++|+.++|||||+.+++. +... .+.....+.......+.+++ ..+.|+||||+.
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~ 82 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV 82 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence 344899999999999999999862 2111 11122233334445566677 456777999999
Q ss_pred ccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcc
Q psy8722 76 RFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLE 133 (223)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 133 (223)
.|.......+.-+|++|+|+|+.+.-......-|... ...++|.++++||.|.+
T Consensus 83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a----~~~~lP~i~fINKmDr~ 136 (276)
T d2bv3a2 83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA----EKYKVPRIAFANKMDKT 136 (276)
T ss_dssp SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH----HTTTCCEEEEEECTTST
T ss_pred hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH----HHcCCCEEEEEeccccc
Confidence 9999999999999999999999987554444444332 33479999999999963
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.9e-16 Score=115.68 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=83.5
Q ss_pred CCCCCCeeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc-ccceeEEEEEEEECCeEEEEEEEeCCCcccccc-------
Q psy8722 8 RNSSSTYSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT-TLQASFLNKKLNIAGKRLNLAIWDTAGQERFHA------- 79 (223)
Q Consensus 8 ~~~~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 79 (223)
++.+.++.++|+++|.+|||||||+|+|.+......... +.............+ ...+..++.++......
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhh
Confidence 344567889999999999999999999986554322221 111111122222222 12222222222111110
Q ss_pred ccccc---cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHHHHHHHHHh--CC
Q psy8722 80 LGPIY---YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QEDAEKYAQSV--GA 152 (223)
Q Consensus 80 ~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~ 152 (223)
..... ......++.+.+........ ...++..+.. ...++++++||.|+.+..... .+...+..... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 11111 12334555566665543222 2233333333 357889999999975432211 12222222222 24
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 153 VHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
+++.+||++|.|++++++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 789999999999999999887643
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.2e-16 Score=121.40 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=101.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh--CCCC-----------------------------CCCccccceeEEEEEEEEC
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE--DKFN-----------------------------EKHITTLQASFLNKKLNIA 60 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (223)
..+.+||+++|+.++|||||+.+|+. +... .+...+++.+.....+.++
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence 45679999999999999999999862 2111 0112344445555556666
Q ss_pred CeEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHH------HHHHHHHHHHHHcCCCCe-EEEEEeCCCcc
Q psy8722 61 GKRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE------KVKNWVKELKKMLGNDIC-LTIAGNKIDLE 133 (223)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 133 (223)
+ .++.|+|+|||..|...+..-...+|++|+|+|+.+...-. +....+..... .++| +++++||+|+.
T Consensus 83 ~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~ 157 (239)
T d1f60a3 83 K--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 157 (239)
T ss_dssp S--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred C--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCC
Confidence 6 56777799999999988888889999999999998753211 12222222222 2454 78899999986
Q ss_pred ccccCC----HHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 134 KQRTVM----QEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 134 ~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
+..... .++...++...+ ++++.+|+..|.|+.+
T Consensus 158 ~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 158 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 543221 234455555555 4588999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.64 E-value=3.1e-15 Score=114.94 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=80.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC--CCCCC----------------CccccceeEEEEEEEECCeEEEEEEEeCCCccccc
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED--KFNEK----------------HITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFH 78 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (223)
||+++|+.++|||||+.+|+.. ..... .....+.......+.+++. ++.++||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCchhhhh
Confidence 7999999999999999999621 11110 0122334444556667774 56677999999999
Q ss_pred cccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 79 ALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
......++-+|++|+|+|+.+.-......-|..... .++|.++++||+|.
T Consensus 82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~----~~~p~~i~iNk~D~ 131 (267)
T d2dy1a2 82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER----LGLPRMVVVTKLDK 131 (267)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh----cccccccccccccc
Confidence 999889999999999999998765555554543333 36899999999995
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.64 E-value=2e-16 Score=119.37 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=92.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh--CCCC-----------------------------CCCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE--DKFN-----------------------------EKHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (223)
++.+||+++|+.++|||||+.+|+. +... .+.....+.......+..++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 3589999999999999999998862 1110 11112222223333334444
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHH------HHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE------KVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
..+.++|||||..|.......+.-+|++|+|+|+.+..... ...+-+..... . ...++++++||+|+...
T Consensus 81 --~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~-~~~~iIv~iNK~D~~~~ 156 (224)
T d1jnya3 81 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-M-GLDQLIVAVNKMDLTEP 156 (224)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-T-TCTTCEEEEECGGGSSS
T ss_pred --ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-h-CCCceEEEEEcccCCCc
Confidence 56777899999999998888889999999999999853221 11221222222 2 12468888999998542
Q ss_pred cc--C----CHHHHHHHHHHhC-----CcEEEecCCCCCCHHH
Q psy8722 136 RT--V----MQEDAEKYAQSVG-----AVHFHTSAKMNRGIEE 167 (223)
Q Consensus 136 ~~--~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 167 (223)
.. . ...++..+...++ ++++.+||..|.|+.+
T Consensus 157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 11 0 1123444444444 3678999999998853
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.62 E-value=1.6e-15 Score=115.60 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=83.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh--CCCC-----------------------------CCCccccceeEEEEEEEECC
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE--DKFN-----------------------------EKHITTLQASFLNKKLNIAG 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (223)
++.+||+++|+.++|||||+.+|+. +... .+.....+.+.....+..++
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 101 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 101 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence 5688999999999999999999952 1110 00011122222222333344
Q ss_pred eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHH------HHHHHHHHHHHHcCCCC-eEEEEEeCCCccc
Q psy8722 62 KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFE------KVKNWVKELKKMLGNDI-CLTIAGNKIDLEK 134 (223)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 134 (223)
..+.+.|+||+..|..........+|++++|+|+.+...-. ...+.+..+... ++ ++++++||+|+..
T Consensus 102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~ 176 (245)
T d1r5ba3 102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPS 176 (245)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCc
Confidence 45777899999999988888889999999999998753111 122222222222 34 4789999999854
Q ss_pred ccc--CCH----HHHHHHHHHh-------CCcEEEecCCCCCCHHHHHH
Q psy8722 135 QRT--VMQ----EDAEKYAQSV-------GAVHFHTSAKMNRGIEEMFL 170 (223)
Q Consensus 135 ~~~--~~~----~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~ 170 (223)
... ... +++..+.... .++++.+||++|+|+.++++
T Consensus 177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 321 111 2222232332 24689999999999976543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.53 E-value=1.1e-13 Score=106.16 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=77.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcccccccc-------c--
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQERFHALG-------P-- 82 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~-- 82 (223)
...++|+|+|.+|+|||||+|.+++.. +.....+..+.+........++ ..+.++||||-....... .
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence 467999999999999999999999654 3333334444444455556677 467788999943221111 1
Q ss_pred cccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCccccccCC
Q psy8722 83 IYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGND--ICLTIAGNKIDLEKQRTVM 139 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~ 139 (223)
......|+++||++++...--......+..+...++.+ .++++|.||.|........
T Consensus 108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~ 166 (257)
T d1h65a_ 108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 166 (257)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence 11245689999998875321111222333344443322 4789999999975544333
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=4.3e-14 Score=115.04 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=89.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCCCCCcc-----ccceeEEEEEEEECCeEEEEEEEeCCCccccccc-----ccc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFNEKHIT-----TLQASFLNKKLNIAGKRLNLAIWDTAGQERFHAL-----GPI 83 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~ 83 (223)
..++|+|+|.+|+|||||+|+|.+......... .++.+..... ..++ -.+.+|||||....... ...
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~--~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNI--PNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSC--TTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCC--CeEEEEeCCCcccccccHHHHHHHh
Confidence 468999999999999999999997544322111 1122221111 1122 24779999995432221 122
Q ss_pred ccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccc-------cccCCHHH--------HHHHHH
Q psy8722 84 YYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEK-------QRTVMQED--------AEKYAQ 148 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~--------~~~~~~ 148 (223)
.+..+|.+|++.|..-...- ..+...+.. .++|+++|.||+|... ......+. ......
T Consensus 132 ~~~~~d~~l~~~~~~~~~~d---~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKKND---IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp TGGGCSEEEEEESSCCCHHH---HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcceEEEEecCCCCCHHH---HHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 35678988888875433221 223334443 3689999999999621 11111111 122223
Q ss_pred HhCC---cEEEecCCCC--CCHHHHHHHHHHHHHH
Q psy8722 149 SVGA---VHFHTSAKMN--RGIEEMFLELSQRMLE 178 (223)
Q Consensus 149 ~~~~---~~~~~Sa~~~--~~i~~~~~~i~~~~~~ 178 (223)
..++ ++|.+|..+. .++.++.+.+.+.+.+
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 3343 5677887643 4888888888776543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=4.2e-14 Score=112.11 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=80.4
Q ss_pred ee-EEEEECCCCCcHHHHHHHHhh--CCCC--------------CCCccccceeEEEEEEEE--------------CCeE
Q psy8722 15 SF-KVVLLGEGCVGKTSVVLRYVE--DKFN--------------EKHITTLQASFLNKKLNI--------------AGKR 63 (223)
Q Consensus 15 ~~-~I~viG~~~~GKSsli~~l~~--~~~~--------------~~~~~~~~~~~~~~~~~~--------------~~~~ 63 (223)
.+ ||+|+|+.++|||||+.+|+. +... .+.....+.......+.+ ++..
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 45 699999999999999999962 2111 111122222222222221 3456
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCc
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDL 132 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 132 (223)
+.+.++||||+..|.......++-+|++|+|+|+.+.-......-|..... .++|.++++||+|.
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr 160 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDR 160 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECccc
Confidence 778999999999999999999999999999999999766555554444443 36899999999995
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.25 E-value=1.1e-12 Score=99.20 Aligned_cols=110 Identities=17% Similarity=0.040 Sum_probs=64.2
Q ss_pred EEEEEeCCCccccccccccc-----cccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 65 NLAIWDTAGQERFHALGPIY-----YRMSNGAVLVYDITD---EDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
.+.+.|+||+..+....... ....+.+++++|+.. +..+............. ...|.++++||+|+....
T Consensus 96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE 173 (244)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence 47788999987653322211 134568899999754 33332222111111111 257999999999985432
Q ss_pred cCCH-----------------------HHHHH---HHHH--hCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy8722 137 TVMQ-----------------------EDAEK---YAQS--VGAVHFHTSAKMNRGIEEMFLELSQRM 176 (223)
Q Consensus 137 ~~~~-----------------------~~~~~---~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 176 (223)
.... ..... .... ..++++.+||++|+|+++++..|.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~ 241 (244)
T d1yrba1 174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 1100 00000 0111 246899999999999999998887753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.22 E-value=1.4e-11 Score=96.99 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=89.2
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhC----CC-------CCCCcc---------------ccceeEEEEEEEECC-----
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVED----KF-------NEKHIT---------------TLQASFLNKKLNIAG----- 61 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~----~~-------~~~~~~---------------~~~~~~~~~~~~~~~----- 61 (223)
.+.++|.|.|+||||||||+++|... .. ++.... ........+.....+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 46789999999999999999998631 10 000000 001111111111110
Q ss_pred -------------eEEEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy8722 62 -------------KRLNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGN 128 (223)
Q Consensus 62 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 128 (223)
..+.+.|++|.|...-... ....+|.+++|......+..+..+.- +-. ++=++|+|
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvN 197 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVN 197 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhh---Hhh-----hhheeeEe
Confidence 1145677788885432222 33559999999999887644333321 111 34488999
Q ss_pred CCCccccccCCHHHHHHHHHH----------hCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q psy8722 129 KIDLEKQRTVMQEDAEKYAQS----------VGAVHFHTSAKMNRGIEEMFLELSQRMLE 178 (223)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 178 (223)
|.|+.+...........+... +..+++.+||.+++|++++++.|.+....
T Consensus 198 KaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~ 257 (323)
T d2qm8a1 198 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 257 (323)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 999865543322222222222 34579999999999999999999776543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.5e-11 Score=96.88 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=57.6
Q ss_pred EEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCC--HHH
Q psy8722 65 NLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVM--QED 142 (223)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~ 142 (223)
.+.+++|.|...-. ..+...+|.+++|.+....+.....+. .+.. ++-++|+||.|........ ..+
T Consensus 148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e-----~aDi~VvNKaD~~~~~~~~~~~~~ 216 (327)
T d2p67a1 148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLME-----VADLIVINKDDGDNHTNVAIARHM 216 (327)
T ss_dssp SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHHH-----HCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhch---hhhc-----cccEEEEEeecccchHHHHHHHHH
Confidence 35555666532211 124466899999998765544433333 2222 2447888999986532211 122
Q ss_pred HHHHHH-------HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy8722 143 AEKYAQ-------SVGAVHFHTSAKMNRGIEEMFLELSQRML 177 (223)
Q Consensus 143 ~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 177 (223)
...... .+..+++.+||.+|+|++++++.|.+...
T Consensus 217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 222222 22347899999999999999999977553
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.13 E-value=1.8e-10 Score=89.00 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEEEECC------------eE---EEEEEEeCCCcccc--
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKLNIAG------------KR---LNLAIWDTAGQERF-- 77 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~i~D~~G~~~~-- 77 (223)
.+||.+||-|+||||||+++++.........|+++.+-....+.+.+ .. ..+.++|+||.-.-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 57999999999999999999996665544445544433333333322 11 24778899994321
Q ss_pred --cccccc---ccccCCEEEEEEECC
Q psy8722 78 --HALGPI---YYRMSNGAVLVYDIT 98 (223)
Q Consensus 78 --~~~~~~---~~~~~d~~i~v~d~~ 98 (223)
..+... .++.+|+++.|+|..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 223333 357899999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.11 E-value=1.1e-09 Score=85.20 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEEECCe---------------EEEEEEEeCCCccc
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLNIAGK---------------RLNLAIWDTAGQER 76 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~ 76 (223)
...++|.+||.|+||||||+|++++... .....|+++.+-....+.+.+. ...+.+.|+||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 3568999999999999999999996543 2344455544433333444321 13678889998442
Q ss_pred c----cccccc---ccccCCEEEEEEECCC
Q psy8722 77 F----HALGPI---YYRMSNGAVLVYDITD 99 (223)
Q Consensus 77 ~----~~~~~~---~~~~~d~~i~v~d~~~ 99 (223)
- ..+... -++.+|++|.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2 122222 3588999999999855
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.96 E-value=7.6e-10 Score=87.02 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=44.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCccccceeEEEEEE----E------------------ECCeEEEEEEEeCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKFNEKHITTLQASFLNKKL----N------------------IAGKRLNLAIWDTAG 73 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~----~------------------~~~~~~~~~i~D~~G 73 (223)
++|+++|.|+||||||+|+|++........|+++.+-..... . .......+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 589999999999999999999665555444544432111100 0 011235788999999
Q ss_pred cccc----cccc---ccccccCCEEEEEEECCC
Q psy8722 74 QERF----HALG---PIYYRMSNGAVLVYDITD 99 (223)
Q Consensus 74 ~~~~----~~~~---~~~~~~~d~~i~v~d~~~ 99 (223)
.-.. .... -..++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 4321 1111 223578999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.7e-09 Score=84.16 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCccccceeEEEEEEE-----------------------------------
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVEDKF-NEKHITTLQASFLNKKLN----------------------------------- 58 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------- 58 (223)
..+|+|+|..++|||||||+|++..+ +....+++..-.......
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence 34799999999999999999998775 444433332111111000
Q ss_pred -------------EC-CeEEEEEEEeCCCcccc-------------ccccccccccCC-EEEEEEECCCHHHHHHHHHHH
Q psy8722 59 -------------IA-GKRLNLAIWDTAGQERF-------------HALGPIYYRMSN-GAVLVYDITDEDSFEKVKNWV 110 (223)
Q Consensus 59 -------------~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~ 110 (223)
+. .....+.++|+||.... ..+...|+.+.+ ++++|.++....+-.....+.
T Consensus 106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~ 185 (299)
T d2akab1 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence 00 00113778899994321 122344555666 556677776654444444443
Q ss_pred HHHHHHcCCCCeEEEEEeCCCccccc
Q psy8722 111 KELKKMLGNDICLTIAGNKIDLEKQR 136 (223)
Q Consensus 111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~ 136 (223)
.. ......++++|+||.|.....
T Consensus 186 ~~---~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 186 KE---VDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HH---HCTTCSSEEEEEECGGGSCTT
T ss_pred HH---hCcCCCceeeEEeccccccch
Confidence 33 333456899999999985543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.74 E-value=1.1e-08 Score=79.80 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVEDKF 40 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~~~ 40 (223)
.+|+|+|..++|||||||+|++..+
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999998776
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.55 E-value=3.2e-08 Score=75.80 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCeeeEEEEECCCCCcHHHHHHHHhhCC-CCCCCccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 11 SSTYSFKVVLLGEGCVGKTSVVLRYVEDK-FNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 11 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
.....++|+|+|.||||||||+|+|.+.. ......|+++.+... +..+. .+.++||||--
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~~~---~~~l~DTPGi~ 168 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVGK---ELELLDTPGIL 168 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEETT---TEEEEECCCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EECCC---CeEEecCCCcc
Confidence 45678999999999999999999999544 345556666655432 33333 36788999943
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=2.3e-06 Score=62.88 Aligned_cols=84 Identities=20% Similarity=0.145 Sum_probs=61.7
Q ss_pred ccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHH--hCCcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQS--VGAVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~ 160 (223)
...|.|.+++|+++.+|. +...+.+|+-..... +++.+||+||+||.+... .+...++... .+.+++.+|++
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~ 81 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK 81 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence 347889999999998864 456677777766664 789999999999965332 2333333433 34688999999
Q ss_pred CCCCHHHHHHHH
Q psy8722 161 MNRGIEEMFLEL 172 (223)
Q Consensus 161 ~~~~i~~~~~~i 172 (223)
++.|++++.+.+
T Consensus 82 ~~~g~~~L~~~l 93 (225)
T d1u0la2 82 TGMGIEELKEYL 93 (225)
T ss_dssp TCTTHHHHHHHH
T ss_pred cchhHhhHHHHh
Confidence 999999988765
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.20 E-value=7.5e-06 Score=57.70 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+||+++|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.06 E-value=4.3e-06 Score=63.62 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=67.6
Q ss_pred cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccCCHHHHHHHHHHhCCcEEEecCC
Q psy8722 81 GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTVMQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
....+..+|++|+|+|+.++.+..+- .+..... ++|.++|+||+|+.... ..+...++....+...+.+|+.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~~-~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~ 80 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILK-NKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSV 80 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCS-SSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTT
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHHc-CCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecc
Confidence 34567899999999999987654321 1222222 57999999999986543 2344455556667889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy8722 161 MNRGIEEMFLELSQRMLEKAQE 182 (223)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~ 182 (223)
++.+..++...+.+.+.+....
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~ 102 (273)
T d1puja_ 81 NGQGLNQIVPASKEILQEKFDR 102 (273)
T ss_dssp TCTTGGGHHHHHHHHHHHHHHH
T ss_pred cCCCccccchhhhhhhhhhhhh
Confidence 9999999988887776665443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=1.7e-06 Score=63.61 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
..+++|++|||||||+|+|...
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCCHHHHHHhhcch
Confidence 5789999999999999999743
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.84 E-value=3.6e-06 Score=62.04 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=61.8
Q ss_pred ccccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCCCccccccC--CHHHHHHHHHHhCCcEEEecCC
Q psy8722 84 YYRMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRTV--MQEDAEKYAQSVGAVHFHTSAK 160 (223)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~ 160 (223)
...|.|.+++|+++.+|. ++..+.+++-..... +++.+||+||+||...... ..+...+.....|.+++.+|+.
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~ 83 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK 83 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence 347899999999998864 566677777665553 7899999999998654221 1122333445678999999999
Q ss_pred CCCCHHHHHHHH
Q psy8722 161 MNRGIEEMFLEL 172 (223)
Q Consensus 161 ~~~~i~~~~~~i 172 (223)
++.|++++...+
T Consensus 84 ~~~gl~~L~~~l 95 (231)
T d1t9ha2 84 DQDSLADIIPHF 95 (231)
T ss_dssp HHTTCTTTGGGG
T ss_pred ChhHHHHHHHhh
Confidence 999988776543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=3.6e-06 Score=62.04 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
..+++|++|||||||+|+|...
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred eEEEECCCCccHHHHHHhhccH
Confidence 5679999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.62 E-value=1.7e-05 Score=55.50 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.++.++|+|.|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999999863
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=7.2e-05 Score=54.83 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
++|-|.-|||||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 578899999999999999854
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=1.7e-05 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-+|+|.|++|+|||||+++|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.44 E-value=3e-05 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
..+|+|+|++||||||+.+.|.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.43 E-value=3.8e-05 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
++.++|+++|+|||||||+.+.|.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999886
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=4.1e-05 Score=53.11 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+|++|||||||+++|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999974
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.35 E-value=5.1e-05 Score=53.45 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+||+|+|+|||||||+.+.|.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998875
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=8.9e-05 Score=56.19 Aligned_cols=61 Identities=16% Similarity=0.029 Sum_probs=39.2
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhCCCC--CC---CccccceeEEEEEEEECCeEEEEEEEeCCCcc
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVEDKFN--EK---HITTLQASFLNKKLNIAGKRLNLAIWDTAGQE 75 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (223)
+-.=|.++|+.++|||+|+|.|.+.... .. ...|.|.-.....+ ..+....+.++||.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~ 96 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG 96 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence 4557889999999999999999865532 22 12344433322222 13344568889999954
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.33 E-value=6.9e-05 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.+-++|+|+|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=7.7e-05 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+||+|+|++||||||+.+.|.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999986
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.26 E-value=7.5e-05 Score=50.87 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|++.|++|||||||+++|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.25 E-value=7.8e-05 Score=52.67 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
++|+|+|+|||||||+.+.|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988863
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.25 E-value=6e-05 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
..++|+|+|++||||||+.+.|.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999998886
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=9.8e-05 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.++|+|+|++||||||+.+.|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=9.3e-05 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+||+|+|++||||||..+.|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998885
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.16 E-value=0.00013 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|+|+|++||||||+.+.|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999863
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.13 E-value=0.00011 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|.|++||||||+.+.|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999873
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00011 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.10 E-value=0.00014 Score=50.47 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|.|+|.+|||||||+++|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999863
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00016 Score=50.51 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|++.|++|+|||||++.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.98 E-value=0.00018 Score=49.72 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+++|++||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998875
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.00017 Score=50.02 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
||+++|++||||||+.+.|.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998875
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00022 Score=50.58 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+||||+||+++|..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.95 E-value=0.00031 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+.+-|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998876
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00023 Score=52.65 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
+|+|+|++|+|||||++.+.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999988753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.94 E-value=0.00022 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.5
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
++..=|+++|.+||||||+.+++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445578899999999999999886
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00029 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
+.|+|+|++||||||....|.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998885
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.88 E-value=0.00027 Score=49.76 Aligned_cols=20 Identities=50% Similarity=0.599 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+|||||||++.|..
T Consensus 5 ivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999873
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.86 E-value=0.00029 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
=|+++|.||+||||+.++|.
T Consensus 4 li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999987
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0003 Score=49.54 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+|+||+||+++|..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.84 E-value=0.00035 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5789999999999999998753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.00088 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+..-|++-|+-|||||||++.+..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHh
Confidence 455688999999999999999983
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.83 E-value=0.00031 Score=49.12 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+|.|++||||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0004 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|||||||++.+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.80 E-value=0.00047 Score=50.98 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 30 ~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00035 Score=48.29 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
++|+|++||||||+.+.|..
T Consensus 9 ivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55789999999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00037 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++|+.|+|||||++.+.+
T Consensus 42 ~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 789999999999999998864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.78 E-value=0.0004 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 5789999999999999977653
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.78 E-value=0.00037 Score=49.54 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+|+||+|||||||+++|.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.77 E-value=0.00035 Score=52.08 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++|+|++|+|||||++.+.+
T Consensus 43 ~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 799999999999999988864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.77 E-value=0.00041 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=20.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...-|++.||||+|||||.+.+..
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444599999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.76 E-value=0.00039 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|||||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4578999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00041 Score=49.99 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+||+|||||||++.|..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999983
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.72 E-value=0.00038 Score=48.26 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|.|++||||||+.+.|..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999988864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.71 E-value=0.00058 Score=48.17 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.8
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
....+-|+|-|++|||||||.+.|.
T Consensus 19 ~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456779999999999999999986
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.69 E-value=0.00043 Score=48.56 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.4
Q ss_pred eEEE-EECCCCCcHHHHHHHHh
Q psy8722 16 FKVV-LLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~-viG~~~~GKSsli~~l~ 36 (223)
+||+ |.|.+||||||+++.|.
T Consensus 1 mkiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3565 56999999999999885
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.69 E-value=0.00054 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5799999999999999988754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.69 E-value=0.00044 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++|+|+.|+|||||++.+.+-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999988753
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.67 E-value=0.00041 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 48899999999999999988643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.00075 Score=47.90 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.--|+|+|++||||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344588999999999999999863
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.64 E-value=0.00051 Score=47.49 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|.|++||||||+.+.|..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55669999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.63 E-value=0.00059 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+|+|.|++|+|||||++.|...
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 47999999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.62 E-value=0.00055 Score=47.56 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+++|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998885
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.61 E-value=0.00066 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5889999999999999988754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00064 Score=48.38 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=+++++|++|+|||++++.|.
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA 64 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHH
Confidence 389999999999999998876
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00051 Score=50.62 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999988753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.57 E-value=0.00068 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.0007 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++++|+.|+|||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00051 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+-+...|.++|.+||||||+.+.|.
T Consensus 16 ~~~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 16 GFRGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp SCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3356678899999999999999886
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00045 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-++++|+.|+|||||++.+.+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999886
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.55 E-value=0.00058 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|+|+|||||||+...|..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.50 E-value=0.00043 Score=51.58 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
+++|+|++|+|||||++.+.+
T Consensus 46 ~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 899999999999999987654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00083 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=++++||++|+|||++++.|.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la 60 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLA 60 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHH
Confidence 389999999999999998876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.00069 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
-.+++.||||+||||+.+.+..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHh
Confidence 3699999999999999998864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.00091 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.+++.||||+||||+++.+..
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.45 E-value=0.0008 Score=47.70 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 10 SSSTYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 10 ~~~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...+.+-|+|-|..||||||+++.|..
T Consensus 4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4456778999999999999999998863
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.44 E-value=0.00088 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.++|++-||+||||||+...|.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998886
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.41 E-value=0.00047 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999988753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.39 E-value=0.0009 Score=49.88 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
.++++|+.|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999988753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.38 E-value=0.001 Score=49.46 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++++|+.|+|||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4789999999999999998764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0019 Score=46.65 Aligned_cols=92 Identities=17% Similarity=0.060 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcccccccc----ccccc--------cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHALG----PIYYR--------MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.|+||+|...+.... ..+.. ..+-.++|+|+.... +.+.......... -+--+++||.|
T Consensus 94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlD 167 (213)
T d1vmaa2 94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLD 167 (213)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEeccc
Confidence 457888999944332211 11111 146688999987542 3333332333322 13457789999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIEE 167 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (223)
.... .=.+...+...+.|+..++. |+++++
T Consensus 168 e~~~----~G~~l~~~~~~~~Pi~~i~~--Gq~v~D 197 (213)
T d1vmaa2 168 GTAK----GGITLAIARELGIPIKFIGV--GEKAED 197 (213)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred CCCc----ccHHHHHHHHHCCCEEEEeC--CCCccc
Confidence 5322 23455667788888877763 555543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0014 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.+-|+|-|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.16 E-value=0.0015 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
++++.||+|+||||+++.+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.15 E-value=0.0021 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+...|++.||+|+|||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 446799999999999999999863
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.08 E-value=0.0018 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-.++|.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998743
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.06 E-value=0.0017 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-+++.|++|+|||++++.+..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 345569999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.06 E-value=0.0024 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
+++-|+|.|.+||||||+.+.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5678999999999999999988643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.04 E-value=0.0016 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|+++||+|+|||.|.+.+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35789999999999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0026 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..-.+++.||+|+||||+++.+..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999874
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.95 E-value=0.0018 Score=47.98 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
.|+|.|++|+|||||++++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 57889999999999999886
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.89 E-value=0.0019 Score=51.97 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
||+++||+|+|||-|.++|.
T Consensus 51 NILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999985
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0026 Score=45.65 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|++.||+||||+|+...|.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46777999999999998876
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.80 E-value=0.0027 Score=45.66 Aligned_cols=91 Identities=20% Similarity=0.081 Sum_probs=52.2
Q ss_pred EEEEEEeCCCcccccc------ccccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccc
Q psy8722 64 LNLAIWDTAGQERFHA------LGPIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQ 135 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 135 (223)
..+.++||+|...+.. ....+ ....+-.++|+|+..... .+......... . ++ --+++||.|...
T Consensus 95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~-~--~~-~~lI~TKlDet~- 167 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA-S--KI-GTIIITKMDGTA- 167 (211)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH-C--TT-EEEEEECTTSCS-
T ss_pred CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc-c--Cc-ceEEEecccCCC-
Confidence 4678889999543321 11111 123567888998876432 22222222222 1 22 246689999633
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 136 RTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
..=.+...+...+.|+..++. |++++
T Consensus 168 ---~~G~~l~~~~~~~lPi~~it~--Gq~v~ 193 (211)
T d1j8yf2 168 ---KGGGALSAVAATGATIKFIGT--GEKID 193 (211)
T ss_dssp ---CHHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred ---cccHHHHHHHHHCcCEEEEeC--CCCcc
Confidence 345566778888999887774 66554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.76 E-value=0.0027 Score=46.94 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|++.||+|+|||+|++.+..
T Consensus 44 giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHH
Confidence 599999999999999999984
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0044 Score=44.49 Aligned_cols=91 Identities=16% Similarity=0.057 Sum_probs=50.5
Q ss_pred EEEEEEeCCCccccccc----cccc---cc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 64 LNLAIWDTAGQERFHAL----GPIY---YR-----MSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
+.+.++||+|....... ...+ .+ ..+-.++|.|+.... +.+.......... -+--+++||.|
T Consensus 92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlD 165 (211)
T d2qy9a2 92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLD 165 (211)
T ss_dssp CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCT
T ss_pred CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecC
Confidence 45788899994332211 1111 11 246788999987643 2222222222221 13357789999
Q ss_pred ccccccCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q psy8722 132 LEKQRTVMQEDAEKYAQSVGAVHFHTSAKMNRGIE 166 (223)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (223)
.... .=.+...+...+.|+..++. |++++
T Consensus 166 e~~~----~G~~l~~~~~~~~Pi~~i~~--Gq~v~ 194 (211)
T d2qy9a2 166 GTAK----GGVIFSVADQFGIPIRYIGV--GERIE 194 (211)
T ss_dssp TCTT----TTHHHHHHHHHCCCEEEEEC--SSSGG
T ss_pred CCCC----ccHHHHHHHHHCCCEEEEeC--CCCcc
Confidence 6332 23445667788899887773 66553
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0029 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
++++.||+|+||||+++.+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHH
Confidence 489999999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0023 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
++++.||+|+||||+++.+..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.003 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
++++.||+|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHH
Confidence 589999999999999988763
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0045 Score=47.16 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCCCCeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 9 NSSSTYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 9 ~~~~~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
.......+-|+|.|++|||||||.+.|.
T Consensus 74 ~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 74 TNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3445678999999999999999998875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0034 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.||+|+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34699999999999999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.55 E-value=0.0041 Score=44.59 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=47.7
Q ss_pred EEEEEEeCCCcccccccc----cccc--------ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q psy8722 64 LNLAIWDTAGQERFHALG----PIYY--------RMSNGAVLVYDITDED-SFEKVKNWVKELKKMLGNDICLTIAGNKI 130 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~~--------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 130 (223)
+.+.++||+|...+.... ..+. ...+-.++|+|+.... ....+... .... + +--+++||.
T Consensus 89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~---~~~~---~-~~~lI~TKl 161 (207)
T d1okkd2 89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF---HEAV---G-LTGVIVTKL 161 (207)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHH---HHHH---C-CSEEEEECT
T ss_pred CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHh---hhcc---C-CceEEEecc
Confidence 467888999954433211 1111 1346788999987643 23333322 2222 1 224678999
Q ss_pred CccccccCCHHHHHHHHHHhCCcEEEecC
Q psy8722 131 DLEKQRTVMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
|..... =.+...+...+.|+..++.
T Consensus 162 Det~~~----G~~l~~~~~~~~Pi~~i~~ 186 (207)
T d1okkd2 162 DGTAKG----GVLIPIVRTLKVPIKFVGV 186 (207)
T ss_dssp TSSCCC----TTHHHHHHHHCCCEEEEEC
T ss_pred CCCCCc----cHHHHHHHHHCCCEEEEeC
Confidence 964332 2234557778888777664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.0036 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-.|++.||+|+|||++++.+..
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHH
Confidence 34699999999999999998874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0034 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
++++.||+|+||||+++.+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 589999999999999999874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.47 E-value=0.0041 Score=44.60 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCcccccc
Q psy8722 64 LNLAIWDTAGQERFHALG----PIY--YRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLTIAGNKIDLEKQRT 137 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 137 (223)
..+.++||+|........ ..+ ..+.+-.++|.|+.....- + .....+....+ .--+++||.|....
T Consensus 93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~--~-~~~~~f~~~~~---~~~~I~TKlDe~~~-- 164 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA--L-SVARAFDEKVG---VTGLVLTKLDGDAR-- 164 (207)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH--H-HHHHHHHHHTC---CCEEEEECGGGCSS--
T ss_pred CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhH--H-HHHHHHHhhCC---CCeeEEeecCcccc--
Confidence 467899999954333211 111 2356788999998765322 2 12222333221 22477899995332
Q ss_pred CCHHHHHHHHHHhCCcEEEecC
Q psy8722 138 VMQEDAEKYAQSVGAVHFHTSA 159 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (223)
.=.+..++...+.|+..++.
T Consensus 165 --~G~~l~~~~~~~~Pi~~i~~ 184 (207)
T d1ls1a2 165 --GGAALSARHVTGKPIYFAGV 184 (207)
T ss_dssp --CHHHHHHHHHHCCCEEEEC-
T ss_pred --chHHHHHHHHHCCCEEEEeC
Confidence 34456677888888877653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.0046 Score=43.91 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998876
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.41 E-value=0.0055 Score=43.89 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
..+..-|.+.|.+|||||||.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667799999999999999998863
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.003 Score=49.79 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=17.6
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~ 36 (223)
=|+++||++|||||++++.|.
T Consensus 44 ~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHH
Confidence 367999999999999996554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.06 E-value=0.0057 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.7
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
+.-.|++.|++|+|||+|++.+..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHH
Confidence 344699999999999999999874
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.95 E-value=0.003 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
+|+++|++|+|||+|++++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 69999999999999999885
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.014 Score=41.14 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-+.|.|++|+|||+|...+..+.
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999987443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.89 E-value=0.0066 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.4
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.-+++++||+|||||-|.++|.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHH
Confidence 45579999999999999999985
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.012 Score=41.95 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.+-|+|.|..||||||+.+.|...
T Consensus 3 k~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCcCCHHHHHHHHHHC
Confidence 356889999999999999987643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.80 E-value=0.011 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-|++.|++|+||||+.-.|...
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 35899999999999999988754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.70 E-value=0.014 Score=41.45 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
+-|+|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999988753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.0086 Score=42.65 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+|-|..||||||+++.|.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7788999999999999876
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0022 Score=45.11 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=16.3
Q ss_pred EEECCCCCcHHHHHHHHh
Q psy8722 19 VLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 19 ~viG~~~~GKSsli~~l~ 36 (223)
+|+|+.|+|||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 477999999999999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.014 Score=43.75 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.4
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~ 36 (223)
...+=|.|-|++|+|||||...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 456889999999999999987653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.014 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.-.++++||+|+|||.|.+.|.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCcchhHHHHHHHH
Confidence 3478999999999999999986
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.47 E-value=0.012 Score=40.78 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.=|++.|++|+||||+.-.|...
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0063 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.|+|-|+.||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.39 E-value=0.014 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--+++.||||+|||+|.+.+.
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHH
Confidence 34478999999999999999986
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.011 Score=42.33 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+|-|+.||||||+++.|.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6777999999999888775
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.031 Score=40.10 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
-++|.|++|+|||+|...+...
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999988743
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.02 E-value=0.0065 Score=45.69 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
..-|+|.|++||||||+.++|.
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3359999999999999998864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.00 E-value=0.018 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-|++.|++|+||||+.-.|...
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 46899999999999999888754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.92 E-value=0.015 Score=42.23 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~ 38 (223)
=++|.|++|+|||+|.-.+...
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988743
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.0092 Score=44.94 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~ 36 (223)
.++ +++|+.|+||||+++++.
T Consensus 25 ~ln-vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 25 RVT-AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp SEE-EEECCTTTCSTHHHHHHH
T ss_pred CeE-EEECCCCCcHHHHHHHHH
Confidence 344 589999999999999874
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.86 E-value=0.017 Score=43.05 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-|.|.|..|+|||||...+.+
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.64 E-value=0.019 Score=45.27 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
|+|.|++|+||||.+..++..
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHhhh
Confidence 889999999999999999853
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.58 E-value=0.019 Score=41.48 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=20.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
+.--++|.|++|+|||+|+..+..+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445789999999999999998743
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.56 E-value=0.021 Score=43.48 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
+++.|+||+|||.|.+.+..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999999873
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.02 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|=|.-||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477889999999999999873
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.026 Score=40.10 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
+++.|++|+||||+++.+..
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999997763
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.26 E-value=0.02 Score=40.49 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.9
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
++.--|++.||+++|||.|+..+..
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4455788999999999999998863
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=93.22 E-value=0.17 Score=34.67 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=56.5
Q ss_pred CeeeEEEEECC-CCCcHHHHHHHHh-hCCCCCCCccccceeEEEEEEEECCeEEEEEEEeCCCccc--------------
Q psy8722 13 TYSFKVVLLGE-GCVGKTSVVLRYV-EDKFNEKHITTLQASFLNKKLNIAGKRLNLAIWDTAGQER-------------- 76 (223)
Q Consensus 13 ~~~~~I~viG~-~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------- 76 (223)
.+.+||+|+|. .++|-+.+. .|. +..+... ..+.+.+.|.+....
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~~------------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~ 82 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLF-KLASGEVFGQD------------------QPIALKLLGSERSFQALEGVAMELEDSLY 82 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHH-HHHHTTTTCTT------------------CCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHH-HHHcCcccCCC------------------ceEEEEEecCccccchhcchhhhhccccc
Confidence 56789999996 778866555 454 4333222 113344555544110
Q ss_pred -------cccccccccccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 77 -------FHALGPIYYRMSNGAVLVYDITDE----------DSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 77 -------~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
........+.++|++|++-..... ....-++.+.+.+.++..++..+++++|-.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd 154 (175)
T d7mdha1 83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 154 (175)
T ss_dssp TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence 011113346788999998765442 1112233455556666655677888888776
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.022 Score=44.62 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.6
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.+++ |+|+.|+|||+++.++.
T Consensus 25 ~~l~~-i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTS-IIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEE-EECSTTSSHHHHHHHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHHH
Confidence 45655 78999999999999974
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.09 E-value=0.027 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
-++|.|=|+-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46899999999999999998863
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.029 Score=40.67 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
+++.|++|+|||++++.+.
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7889999999999998875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.98 E-value=0.026 Score=40.55 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVEDK 39 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~~~ 39 (223)
-++|.|++|+|||+|...+..+.
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999987433
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.98 E-value=0.03 Score=40.00 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q psy8722 18 VVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~~ 38 (223)
+.+.|++|+|||-|++.+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998743
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.03 Score=40.45 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
--++|.|++|+|||+|...+..
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.89 E-value=0.034 Score=42.61 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-++|.|=|+-|+||||+++.|..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 467999999999999999998874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.73 E-value=0.029 Score=40.02 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
|+|=|.-||||||+++.|.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7889999999999998886
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.61 E-value=0.026 Score=43.27 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.8
Q ss_pred eeeEEEEECCCCCcHHHHHHHHhhC
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYVED 38 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~~~ 38 (223)
.-++|.|=|+-|+||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.031 Score=44.10 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q psy8722 15 SFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 15 ~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-+++|+|.+|+|||+++..++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 34799999999999999987763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.35 E-value=0.039 Score=40.69 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
++|.|++|+|||+|+..+.
T Consensus 38 ~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6789999999999988876
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.16 E-value=0.053 Score=41.14 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
.++++||+|+|||.+.+.|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678889999999999998763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.15 E-value=0.04 Score=39.27 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=18.5
Q ss_pred eeeEEEEECCCCCcHHHHHHHHh
Q psy8722 14 YSFKVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 14 ~~~~I~viG~~~~GKSsli~~l~ 36 (223)
+.--++|.|++|+|||+|...+.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 33457889999999999987764
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.99 E-value=0.031 Score=41.70 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.1
Q ss_pred EEEECCCCCcHHHHH
Q psy8722 18 VVLLGEGCVGKTSVV 32 (223)
Q Consensus 18 I~viG~~~~GKSsli 32 (223)
++|+|++|+||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 689999999999754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.79 E-value=0.051 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-|+|.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998863
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.45 E-value=0.04 Score=41.42 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=13.2
Q ss_pred EEEECCCCCcHHHHH
Q psy8722 18 VVLLGEGCVGKTSVV 32 (223)
Q Consensus 18 I~viG~~~~GKSsli 32 (223)
++|.|++|+||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 789999999999754
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.34 E-value=0.061 Score=39.78 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.1
Q ss_pred CeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 13 TYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 13 ~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.++--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4566788899999999999999873
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.061 Score=40.20 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
|++++|++|+|||+|+..+..
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHH
Confidence 899999999999999988864
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=0.058 Score=39.61 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.7
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
++|.|++|+|||+|+-.+.
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5689999999999998765
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.33 E-value=0.1 Score=33.45 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCeeeEEEEECCCCCcHHHHHHHHhh
Q psy8722 12 STYSFKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 12 ~~~~~~I~viG~~~~GKSsli~~l~~ 37 (223)
.++-+-|.+-|..|+|||+|.+.|..
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHHH
Confidence 46778999999999999999999963
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.08 E-value=0.12 Score=39.87 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.5
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy8722 17 KVVLLGEGCVGKTSVVLRY 35 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l 35 (223)
-.+|.|++|+|||+++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 4678899999999987553
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.26 E-value=0.45 Score=31.62 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.0
Q ss_pred eeeEEEEECC-CCCcHHHHHH
Q psy8722 14 YSFKVVLLGE-GCVGKTSVVL 33 (223)
Q Consensus 14 ~~~~I~viG~-~~~GKSsli~ 33 (223)
..+||+|+|. .++|.+....
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~ 22 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYS 22 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHH
T ss_pred CceEEEEECCCCHHHHHHHHH
Confidence 4689999995 7899887654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.09 E-value=0.78 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=30.2
Q ss_pred cccccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 83 IYYRMSNGAVLVYDITDE----------DSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
..++++|++|+....... ....-++++...+.+...++.-++++.|-.|
T Consensus 76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD 134 (154)
T d1y7ta1 76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN 134 (154)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence 456889999998865432 1223334455666665555566777777776
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.67 E-value=0.17 Score=37.36 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
|++++|++|+|||+|+..+..
T Consensus 70 r~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHH
Confidence 899999999999999988864
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.95 E-value=2 Score=29.82 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccccccccccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCccccccCCHHH
Q psy8722 64 LNLAIWDTAGQERFHALGPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLGNDICLT-IAGNKIDLEKQRTVMQED 142 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~ 142 (223)
+.+.++|+++... ......+..+|.++++...+ ..+.....+....+.+ .+.|++ +|+|+.+.... ....+.
T Consensus 112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~~ 184 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPEA 184 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHHH
T ss_pred CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhHH
Confidence 5688889987542 22334456799999999875 5566666666655554 356754 78899986433 334444
Q ss_pred HHHH
Q psy8722 143 AEKY 146 (223)
Q Consensus 143 ~~~~ 146 (223)
.+++
T Consensus 185 ~~~~ 188 (237)
T d1g3qa_ 185 AEDV 188 (237)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4333
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.71 E-value=0.21 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~~ 37 (223)
-+.|.|++++|||+|+-.+..
T Consensus 56 itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHH
Confidence 467899999999999987763
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.66 E-value=0.21 Score=36.29 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q psy8722 16 FKVVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 16 ~~I~viG~~~~GKSsli~~l~~ 37 (223)
.-|+|.|++|+||+.+.+.+..
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 3589999999999999988863
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=85.79 E-value=0.24 Score=36.10 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=53.6
Q ss_pred EEEEEEeCCCccccccc-cccccccCCEEEEEEECCCHHHHHHHHHHHHHHHHHcC-CCCe-EEEEEeCCCccccccCCH
Q psy8722 64 LNLAIWDTAGQERFHAL-GPIYYRMSNGAVLVYDITDEDSFEKVKNWVKELKKMLG-NDIC-LTIAGNKIDLEKQRTVMQ 140 (223)
Q Consensus 64 ~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~Dl~~~~~~~~ 140 (223)
+.+.++|+|+.-..... .......+|.++++.+. +..++..+......+..... .+.+ .-++.|+.+.... .
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~ 190 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence 46788899874322222 12223457888777776 46677766666666655443 2333 3477899875432 4
Q ss_pred HHHHHHHHHhCCcEEE
Q psy8722 141 EDAEKYAQSVGAVHFH 156 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~~ 156 (223)
+..++++...+.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (269)
T d1cp2a_ 191 ELLDAFAKELGSQLIH 206 (269)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred chhhhhHhhcCCeEEE
Confidence 5677788888887654
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=84.83 E-value=0.25 Score=34.04 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q psy8722 18 VVLLGEGCVGKTSVVLRYVE 37 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~~ 37 (223)
|+|+|...+|||.+..++..
T Consensus 2 iLVtGGarSGKS~~AE~l~~ 21 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHHh
Confidence 68999999999999999874
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.31 E-value=3.4 Score=26.81 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=27.8
Q ss_pred cccccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q psy8722 83 IYYRMSNGAVLVYDITD----------EDSFEKVKNWVKELKKMLGNDICLTIAGNKID 131 (223)
Q Consensus 83 ~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 131 (223)
..++++|++++..-... .....-++++.+.+.++ .++.-++++.|-.|
T Consensus 64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD 121 (144)
T d1mlda1 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN 121 (144)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence 34577898888765422 12223344455556555 34566777777777
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.99 E-value=0.39 Score=34.44 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
++|-|+..+||||+++.+.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5788999999999999863
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.13 E-value=0.44 Score=33.92 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q psy8722 18 VVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 18 I~viG~~~~GKSsli~~l~ 36 (223)
++|-||..+||||+++.+.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6799999999999999863
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.01 E-value=0.3 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
|++++|++|+|||+|+..+.
T Consensus 70 r~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 70 RELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp BCEEEESTTSSHHHHHHHHH
T ss_pred EEEeecCCCCChHHHHHHHH
Confidence 88999999999999987776
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.96 E-value=0.33 Score=31.22 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=15.9
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy8722 17 KVVLLGEGCVGKTSVVLRYV 36 (223)
Q Consensus 17 ~I~viG~~~~GKSsli~~l~ 36 (223)
..+|.++.|+|||.++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 34678999999999886554
|