Psyllid ID: psy8739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRladeessgwvEELTKGSIEAITLksldldvlnfttenshsFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLedeqglvgkNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNaahnetnnTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA
Flexible Loop (DISEMBL)
AATEKIAKQLQHQLNevqgkldetnrSLNDFDAAKKKLSIENSDLLRQLEEAESQvsqlskikislttqledtkrladeessgwveeltkgsieaITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQqkkkleqengglkkdiedlegdvekqkrkiegdlkltqeAVADLERNKKELEQTIQRKDKEIASLTakledeqglvgknqKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGerleeaggatsaqielnKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHErnaahnetnntrAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQvsqlskikislttqledtkrladeegreratllgkfrnlehDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTkyesegvaraeeleeskseerrvDDLAAEldasqkecRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA
Low Complexity Region (SEG)
AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNqlfqqkkkleqeNGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKelqarieeleeeveaerqSRAKAEKQradlareleelgerleeaggaTSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAeeleeskseeRRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA
Disordered region (IsUnstruct)
***********************************************************************************WVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLY***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LF************************
Disordered Region (DISOPRED)
*****IA***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL**********SKIKISLTTQLED**************ELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL*******************DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQL**********SKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLE**************KANADAQLWRTKYE*******************VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE**********
Disordered Region (DISPRO)
AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AATEKIxxxxxxxxxxxxxxxxxxxxxLNDFDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSAQIELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTRAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNDFDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEDTKRLADEEGRExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYESEGVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNKNLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	558	2.2.26 [Sep-21-2011]
P05661	1962	Myosin heavy chain, muscl	yes	N/A	0.689	0.196	0.822	1e-156
Q91Z83	1935	Myosin-7 OS=Mus musculus	yes	N/A	0.767	0.221	0.459	3e-97
Q02566	1938	Myosin-6 OS=Mus musculus	no	N/A	0.767	0.220	0.463	3e-97
P49824	1935	Myosin-7 OS=Canis familia	yes	N/A	0.767	0.221	0.459	3e-97
P13540	1934	Myosin-7 OS=Mesocricetus	N/A	N/A	0.767	0.221	0.459	4e-97
P12883	1935	Myosin-7 OS=Homo sapiens	yes	N/A	0.767	0.221	0.459	4e-97
P24733	1938	Myosin heavy chain, stria	N/A	N/A	0.684	0.197	0.563	4e-97
P79293	1935	Myosin-7 OS=Sus scrofa GN	yes	N/A	0.767	0.221	0.459	6e-97
P02564	1935	Myosin-7 OS=Rattus norveg	no	N/A	0.767	0.221	0.459	8e-97
P13533	1939	Myosin-6 OS=Homo sapiens	no	N/A	0.767	0.220	0.463	1e-96

>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4

 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 319/388 (82%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1002 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1061

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE++S+TAKLEDEQ +V K+Q+QIKELQARIEELEEEV
Sbjct: 1062 QEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEV 1121

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1122 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1181

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQL R+K
Sbjct: 1182 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLGRDK 1241

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1242 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1301

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1302 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1361

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1362 KANAEAQVWRSKYESDGVARSEELEEAK 1389

Muscle contraction.
Drosophila melanogaster (taxid: 7227)

>sp|Q91Z83|MYH7_MOUSE Myosin-7 OS=Mus musculus GN=Myh7 PE=1 SV=1

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 320/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1004 QQALDDLQAEEDKVNTLTKAKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1056

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1057 GDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1116

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1117 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1176

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1177 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1236

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND  + + KL  EN +L RQL+E E+
Sbjct: 1237 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEA 1296

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1297 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1356

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1357 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1416

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1417 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1476

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1477 LSTELFKLKNAYEESLEHLETFKRENKNL 1505

Muscle contraction.

Mus musculus (taxid: 10090)

>sp|Q02566|MYH6_MOUSE Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 236/509 (46%), Positives = 318/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1006 QQALDDLQAEEDKVNTLTKSKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1058

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K +LE+ +++K+ +I+   +K+EDEQ L  + QK++KE QARIE
Sbjct: 1059 GDLKLTQESIMDLENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQLQKKLKENQARIE 1118

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1119 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1178

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1179 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1238

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+++ L+ Q NE + KL+E  RSLNDF   + KL  EN +L RQLEE E+
Sbjct: 1239 QIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQLEEKEA 1298

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K+S T Q+ED KR  +EEG+ +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1299 LISQLTRGKLSYTQQMEDLKRQLEEEGKAKNALAHALQSSRHDCDLLREQYEEEMEAKAE 1358

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1359 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1418

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1419 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1478

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1479 LSTELFKLKNAYEESLEHLETFKRENKNL 1507

Muscle contraction.

Mus musculus (taxid: 10090)

>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 320/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1004 QQALDDLQAEEDKVNTLTKAKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1056

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1057 GDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1116

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1117 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1176

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1177 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1236

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND  + + KL  EN +L RQL+E E+
Sbjct: 1237 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEA 1296

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1297 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1356

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1357 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1416

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1417 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1476

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1477 LSTELFKLKNAYEESLEHLETFKRENKNL 1505

Muscle contraction.

Canis familiaris (taxid: 9615)

>sp|P13540|MYH7_MESAU Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2

 Score =  355 bits (912), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 320/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1003 QQALDDLQAEEDKVNTLTKSKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1055

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1056 GDLKLTQESIMDLENDKQQLDEKLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1115

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1116 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1175

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1176 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1235

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND  + + KL  EN +L RQL+E E+
Sbjct: 1236 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEA 1295

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + + TL    ++  HD D +REQ EEE E KA+
Sbjct: 1296 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNTLAHALQSARHDCDLLREQYEEETEAKAE 1355

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQ  LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1356 LQCVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1415

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1416 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1475

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1476 LSTELFKLKNAYEESLEHLETFKRENKNL 1504

Muscle contraction.

Mesocricetus auratus (taxid: 10036)

>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5

 Score =  355 bits (912), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 320/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1004 QQALDDLQAEEDKVNTLTKAKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1056

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1057 GDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1116

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1117 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1176

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1177 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1236

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND  + + KL  EN +L RQL+E E+
Sbjct: 1237 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEA 1296

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1297 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1356

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1357 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEK 1416

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1417 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1476

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1477 LSTELFKLKNAYEESLEHLETFKRENKNL 1505

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1

 Score =  355 bits (912), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/385 (56%), Positives = 286/385 (74%), Gaps = 3/385 (0%)

Query: 125  TVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLTQEA 181
            T D LQ EED  N L + K KLEQ    L+ ++E    + GDVEK KRK+E DLK TQE 
Sbjct: 1003 TSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQEN 1062

Query: 182  VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241
            V DLER K+ELE+ ++RK+ EI+SL +KLEDEQ LV + Q++IKELQARIEELEEE+EAE
Sbjct: 1063 VEDLERVKRELEENVRRKEAEISSLNSKLEDEQNLVSQLQRKIKELQARIEELEEELEAE 1122

Query: 242  RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 301
            R +RAK EKQRA+L RELEELGERL+EAGGATSAQIELNKKREAE+ K+RRDLEEA++QH
Sbjct: 1123 RNARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAELLKIRRDLEEASLQH 1182

Query: 302  ESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAAT 361
            E+ ++ LRKKH DA +EM +Q+DQL K+K+K E ++     E ++  +      + K  +
Sbjct: 1183 EAQISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDDLESQMTHNMKNKGCS 1242

Query: 362  EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 421
            EK+ KQ + Q++++  +L+++ RS+N+  + K +L  ENSDL RQLE+AE +VS LSK K
Sbjct: 1243 EKVMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSDLTRQLEDAEHRVSVLSKEK 1302

Query: 422  ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKAN 481
              L++QLED +R  +EE R R+ L  + RN+  D+D IREQLEEE E K+D+QRQLSKAN
Sbjct: 1303 SQLSSQLEDARRSLEEETRARSKLQNEVRNMHADMDAIREQLEEEQESKSDVQRQLSKAN 1362

Query: 482  ADAQLWRTKYESEGVARAEELEESK 506
             + Q WR+K+ESEG  R EELE+ K
Sbjct: 1363 NEIQQWRSKFESEGANRTEELEDQK 1387

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Aequipecten irradians (taxid: 31199)

>sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2

 Score =  355 bits (911), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 319/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ        ++DLEG          D+E+ KRK+E
Sbjct: 1004 QQALDDLQAEEDKVNTLTKAKVKLEQH-------VDDLEGSLEQEKKVRMDLERAKRKLE 1056

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1057 GDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1116

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1117 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1176

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1177 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1236

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND  + + KL  EN +L RQL+E E+
Sbjct: 1237 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEA 1296

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1297 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1356

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1357 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1416

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1417 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1476

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1477 LSTELFKLKNAYEESLEHLETFKRENKNL 1505

Muscle contraction.

Sus scrofa (taxid: 9823)

>sp|P02564|MYH7_RAT Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=2 SV=2

 Score =  354 bits (909), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 319/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1004 QQALDDLQAEEDKVNTLTKAKVKLEQQ-------VDDLEGSLDQDKKVRMDLERAKRKLE 1056

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K++L++ +++KD E+ +L A++EDEQ L  + QK++KELQARIE
Sbjct: 1057 GDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIE 1116

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1117 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1176

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1177 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1236

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+ + L+ Q+NE + K +ET RS+ND    + KL  EN +L RQL+E E+
Sbjct: 1237 QIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTRQRAKLQTENGELSRQLDEKEA 1296

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K++ T QLED KR  +EE + +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1297 LISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1356

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1357 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1416

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1417 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILVEWKQKYEESQSELESSQKEARS 1476

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1477 LSTELFKLKNAYEESLEHLETFKRENKNL 1505

Muscle contraction.

Rattus norvegicus (taxid: 10116)

>sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=5

 Score =  354 bits (908), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 236/509 (46%), Positives = 317/509 (62%), Gaps = 81/509 (15%)

Query: 123  QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIE 172
            Q  +D LQ EED  N L + K KLEQ+       ++DLEG          D+E+ KRK+E
Sbjct: 1006 QQALDDLQVEEDKVNSLSKSKVKLEQQ-------VDDLEGSLEQEKKVRMDLERAKRKLE 1058

Query: 173  GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            GDLKLTQE++ DLE +K +LE+ +++K+ +I    +K+EDEQ L  + QK++KE QARIE
Sbjct: 1059 GDLKLTQESIMDLENDKLQLEEKLKKKEFDINQQNSKIEDEQVLALQLQKKLKENQARIE 1118

Query: 233  ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            ELEEE+EAER +RAK EK R+DL+RELEE+ ERLEEAGGATS QIE+NKKREAE  K+RR
Sbjct: 1119 ELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRR 1178

Query: 293  DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
            DLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++  +  +
Sbjct: 1179 DLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 1238

Query: 353  QLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES 412
            Q+ + KA  EK+++ L+ Q NE + KL+E  RSLNDF   + KL  EN +L RQLEE E+
Sbjct: 1239 QIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQLEEKEA 1298

Query: 413  QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD 472
             +SQL++ K+S T Q+ED KR  +EEG+ +  L    ++  HD D +REQ EEE E KA+
Sbjct: 1299 LISQLTRGKLSYTQQMEDLKRQLEEEGKAKNALAHALQSARHDCDLLREQYEEETEAKAE 1358

Query: 473  LQRQLSKANADAQLWRTKYESEGVARAEELEESKSE------------------------ 508
            LQR LSKAN++   WRTKYE++ + R EELEE+K +                        
Sbjct: 1359 LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAKCSSLEK 1418

Query: 509  -----ERRVDDL----------AAELDASQK-------------------------ECRN 528
                 +  ++DL          AA LD  Q+                         E R+
Sbjct: 1419 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1478

Query: 529  YSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             STELF+LK AYEE+ E LE  +RENKNL
Sbjct: 1479 LSTELFKLKNAYEESLEHLETFKRENKNL 1507

Muscle contraction.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
195035369	2153	GH11564 [Drosophila grimshawi] gi|193905	0.689	0.178	0.827	1e-156
195114526	2153	GI17055 [Drosophila mojavensis] gi|19391	0.689	0.178	0.827	1e-156
194759999	2165	GF15360 [Drosophila ananassae] gi|190615	0.689	0.177	0.824	1e-156
195386602	2153	myosin heavy chain [Drosophila virilis]	0.689	0.178	0.824	1e-156
157110721	1940	myosin heavy chain, nonmuscle or smooth	0.689	0.198	0.822	1e-155
198474044	2166	GA25794 [Drosophila pseudoobscura pseudo	0.689	0.177	0.817	1e-155
386769712	1962	myosin heavy chain, isoform S [Drosophil	0.689	0.196	0.822	1e-154
195344578	2153	GM17204 [Drosophila sechellia] gi|194133	0.689	0.178	0.822	1e-154
170029190	2068	myosin heavy chain [Culex quinquefasciat	0.689	0.186	0.819	1e-154
229472621	836	myosin heavy chain [Bombyx mandarina]	0.494	0.330	0.867	1e-154

>gi|195035369|ref|XP_001989150.1| GH11564 [Drosophila grimshawi] gi|193905150|gb|EDW04017.1| GH11564 [Drosophila grimshawi]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 321/388 (82%), Positives = 353/388 (90%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1193 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKGKRKVEGDLKLT 1252

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE++S+TAKLEDEQ +VGK+Q+QIKELQARIEELEEEV
Sbjct: 1253 QEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVGKHQRQIKELQARIEELEEEV 1312

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1313 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1372

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R ++HNE N TR A DQLAR+K
Sbjct: 1373 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQSSHNELNQTRTACDQLARDK 1432

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1433 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1492

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1493 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1552

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1553 KANAEAQVWRSKYESDGVARSEELEEAK 1580

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114526|ref|XP_002001818.1| GI17055 [Drosophila mojavensis] gi|193912393|gb|EDW11260.1| GI17055 [Drosophila mojavensis]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 321/388 (82%), Positives = 351/388 (90%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1193 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1252

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE++S+TAKLEDEQ +VGK+Q+QIKELQARIEELEEEV
Sbjct: 1253 QEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVGKHQRQIKELQARIEELEEEV 1312

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1313 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1372

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQLAR+K
Sbjct: 1373 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLARDK 1432

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1433 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1492

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1493 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1552

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1553 KANAEAQVWRSKYESDGVARSEELEEAK 1580

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759999|ref|XP_001962229.1| GF15360 [Drosophila ananassae] gi|190615926|gb|EDV31450.1| GF15360 [Drosophila ananassae]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 320/388 (82%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1205 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1264

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE+ S+TAKLEDEQ +VGK+Q+QIKELQARIEELEEEV
Sbjct: 1265 QEAVADLERNKKELEQTIQRKDKELCSITAKLEDEQVVVGKHQRQIKELQARIEELEEEV 1324

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1325 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1384

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQL R+K
Sbjct: 1385 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLGRDK 1444

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1445 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1504

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1505 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1564

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1565 KANAEAQVWRSKYESDGVARSEELEEAK 1592

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386602|ref|XP_002051993.1| myosin heavy chain [Drosophila virilis] gi|194148450|gb|EDW64148.1| myosin heavy chain [Drosophila virilis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 320/388 (82%), Positives = 351/388 (90%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1193 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1252

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAV+DLERNKKELEQTIQRKDKE++S+TAKLEDEQ +VGK+Q+QIKELQARIEELEEEV
Sbjct: 1253 QEAVSDLERNKKELEQTIQRKDKELSSITAKLEDEQVVVGKHQRQIKELQARIEELEEEV 1312

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1313 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1372

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQLAR+K
Sbjct: 1373 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLARDK 1432

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1433 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1492

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1493 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1552

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1553 KANAEAQVWRSKYESDGVARSEELEEAK 1580

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110721|ref|XP_001651219.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108878633|gb|EAT42858.1| AAEL005656-PA [Aedes aegypti]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 319/388 (82%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    L GDVEK KRK+EGDLKLT
Sbjct: 1002 NQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLRGDVEKAKRKVEGDLKLT 1061

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAV+DLERNKKE++QTI RKDKEI++L+AKLEDEQ LVGK QKQIKELQ RIEELEEEV
Sbjct: 1062 QEAVSDLERNKKEMDQTIMRKDKEISALSAKLEDEQNLVGKLQKQIKELQGRIEELEEEV 1121

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE++KLRRDLEEAN
Sbjct: 1122 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELAKLRRDLEEAN 1181

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHE TLANLRKKHNDAV+EM EQ+DQLNKLKTKAEH+R   +NE NNTR+A DQL+REK
Sbjct: 1182 IQHEGTLANLRKKHNDAVAEMAEQVDQLNKLKTKAEHDRANMYNELNNTRSACDQLSREK 1241

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQGKLDETNR+LNDFDAAKKKLSIENSDLLRQLE+AESQVSQLS
Sbjct: 1242 AAQEKIAKQLQHTLNEVQGKLDETNRTLNDFDAAKKKLSIENSDLLRQLEDAESQVSQLS 1301

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLT QLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGK D+QRQLS
Sbjct: 1302 KIKISLTQQLEDTKRLADEEARERATLLGKFRNLEHDLDNLREQVEEEAEGKGDIQRQLS 1361

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQLWR+KYESEGVARAEELEE+K
Sbjct: 1362 KANAEAQLWRSKYESEGVARAEELEEAK 1389

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198474044|ref|XP_002132614.1| GA25794 [Drosophila pseudoobscura pseudoobscura] gi|198138224|gb|EDY70016.1| GA25794 [Drosophila pseudoobscura pseudoobscura]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 317/388 (81%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1206 NQKTGEELQSAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKGKRKVEGDLKLT 1265

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQ IQRKDKE++S+TAKLEDEQ +VGK+Q+QIKELQARIEELEEEV
Sbjct: 1266 QEAVADLERNKKELEQAIQRKDKELSSITAKLEDEQVVVGKHQRQIKELQARIEELEEEV 1325

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1326 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1385

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQ+ R+K
Sbjct: 1386 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQMGRDK 1445

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1446 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1505

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1506 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1565

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA++Q+WR+KYES+GVAR+EELEE+K
Sbjct: 1566 KANAESQIWRSKYESDGVARSEELEEAK 1593

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769712|ref|NP_001246049.1| myosin heavy chain, isoform S [Drosophila melanogaster] gi|383291522|gb|AFH03723.1| myosin heavy chain, isoform S [Drosophila melanogaster]

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 319/388 (82%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1002 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1061

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE++S+TAKLEDEQ +V K+Q+QIKELQARIEELEEEV
Sbjct: 1062 QEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEV 1121

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1122 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1181

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQL R+K
Sbjct: 1182 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLGRDK 1241

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1242 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1301

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1302 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1361

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1362 KANAEAQVWRSKYESDGVARSEELEEAK 1389

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195344578|ref|XP_002038858.1| GM17204 [Drosophila sechellia] gi|194133988|gb|EDW55504.1| GM17204 [Drosophila sechellia]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 319/388 (82%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    + GDVEK KRK+EGDLKLT
Sbjct: 1193 NQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLT 1252

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTIQRKDKE++S+TAKLEDEQ +V K+Q+QIKELQARIEELEEEV
Sbjct: 1253 QEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEV 1312

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE+SKLRRDLEEAN
Sbjct: 1313 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEAN 1372

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHESTLANLRKKHNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQL R+K
Sbjct: 1373 IQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLGRDK 1432

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            AA EKIAKQLQH LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLS
Sbjct: 1433 AAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLS 1492

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLS
Sbjct: 1493 KIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLS 1552

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQ+WR+KYES+GVAR+EELEE+K
Sbjct: 1553 KANAEAQVWRSKYESDGVARSEELEEAK 1580

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029190|ref|XP_001842476.1| myosin heavy chain [Culex quinquefasciatus] gi|167881579|gb|EDS44962.1| myosin heavy chain [Culex quinquefasciatus]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 318/388 (81%), Positives = 347/388 (89%), Gaps = 3/388 (0%)

Query: 122  SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE---DLEGDVEKQKRKIEGDLKLT 178
            +Q T + LQ  ED  N L + K KLEQ    L+  +E    L GDVEK KRK+EGDLKLT
Sbjct: 1111 NQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLRGDVEKAKRKVEGDLKLT 1170

Query: 179  QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
            QEAVADLERNKKELEQTI RKDKEI++L+AKLEDEQ LVGK QKQIKELQ RIEELEEEV
Sbjct: 1171 QEAVADLERNKKELEQTIMRKDKEISALSAKLEDEQSLVGKLQKQIKELQGRIEELEEEV 1230

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            EAERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE++KLRRDLEE+N
Sbjct: 1231 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELAKLRRDLEESN 1290

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
            IQHE TLANLRKKHNDAV+EM EQ+DQLNKLKTKAEH+R   +N+ NNTR A DQLAREK
Sbjct: 1291 IQHEGTLANLRKKHNDAVAEMAEQVDQLNKLKTKAEHDRANMYNDLNNTRTACDQLAREK 1350

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            A+ EKIAKQLQH LNEVQGKLDETNR+LNDFD +KKKLSIENSDLLRQLE+AESQVSQLS
Sbjct: 1351 ASQEKIAKQLQHTLNEVQGKLDETNRTLNDFDTSKKKLSIENSDLLRQLEDAESQVSQLS 1410

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            KIKISLT QLEDTKRLADEE RERATLLGKFRNLEHD+D++REQ+EEEAEGK D+QRQLS
Sbjct: 1411 KIKISLTQQLEDTKRLADEESRERATLLGKFRNLEHDLDSLREQVEEEAEGKGDIQRQLS 1470

Query: 479  KANADAQLWRTKYESEGVARAEELEESK 506
            KANA+AQLWRTKYESEGVARAEELEE+K
Sbjct: 1471 KANAEAQLWRTKYESEGVARAEELEEAK 1498

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229472621|gb|ACQ72825.1| myosin heavy chain [Bombyx mandarina]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 301/347 (86%), Positives = 320/347 (92%)

Query: 160 LEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGK 219
           L  DVEKQ+RK+EGDLKLTQEAVADLERNKKELEQTIQRKDKEI+SLTAKLEDEQ LV K
Sbjct: 19  LRADVEKQRRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKEISSLTAKLEDEQSLVSK 78

Query: 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIEL 279
            QKQIKELQ RIEELEEEVE+ERQ+RAKAEKQRADLARE EELGERLEEAGGATSAQIEL
Sbjct: 79  LQKQIKELQGRIEELEEEVESERQARAKAEKQRADLAREPEELGERLEEAGGATSAQIEL 138

Query: 280 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNA 339
           NKKREAE+SKLRRDLEEANIQHE+TLANLRKKHNDAVSEMGEQ+DQLNKLK KAE ER  
Sbjct: 139 NKKREAELSKLRRDLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQ 198

Query: 340 AHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIE 399
             +E N+ RA  D L+ EKAA EKI KQ QHQLNEVQ K DE NR+LND DAAKKKLSIE
Sbjct: 199 YFSEVNDLRAGLDHLSNEKAAQEKIVKQPQHQLNEVQSKADEANRTLNDLDAAKKKLSIE 258

Query: 400 NSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNI 459
           NSDLLRQLEEAESQVSQLSKIK+SLTTQLEDTKRLADEE RERATLLGKFRNLEHD+DNI
Sbjct: 259 NSDLLRQLEEAESQVSQLSKIKVSLTTQLEDTKRLADEEARERATLLGKFRNLEHDLDNI 318

Query: 460 REQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESK 506
           REQ+EEEAEGKADLQRQLSKANA+AQLWR+KYESEGVAR+EELEE+K
Sbjct: 319 REQVEEEAEGKADLQRQLSKANAEAQLWRSKYESEGVARSEELEEAK 365

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
FB|FBgn0264695	1962	Mhc "Myosin heavy chain" [Dros	0.933	0.265	0.546	3.6e-132
WB|WBGene00006789	1966	unc-54 [Caenorhabditis elegans	0.953	0.270	0.360	7.3e-84
UNIPROTKB|K7GMH0	1130	K7GMH0 "Uncharacterized protei	0.969	0.478	0.355	2.8e-82
ZFIN|ZDB-GENE-080930-1	1938	smyhc3 "slow myosin heavy chai	0.969	0.279	0.357	5.3e-81
UNIPROTKB|F1N2G0	1940	MYH6 "Uncharacterized protein"	0.969	0.278	0.353	6.9e-81
ZFIN|ZDB-GENE-110401-4	1942	si:ch211-24n20.3 "si:ch211-24n	0.969	0.278	0.353	1.4e-80
MGI|MGI:97255	1938	Myh6 "myosin, heavy polypeptid	0.969	0.279	0.351	2.3e-80
ZFIN|ZDB-GENE-061027-393	1943	vmhcl "ventricular myosin heav	0.969	0.278	0.351	6.3e-80
RGD|3138	1940	Myh3 "myosin, heavy chain 3, s	0.967	0.278	0.363	1e-79
UNIPROTKB|G3V6D8	1940	Myh4 "Myosin-4" [Rattus norveg	0.967	0.278	0.363	1e-79

FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 1303 (463.7 bits), Expect = 3.6e-132, P = 3.6e-132
 Identities = 294/538 (54%), Positives = 354/538 (65%)

Query:    27 SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVE 86
             +L D+     KL+ + +DL  QL + + +++Q    +  L  Q +   +         +E
Sbjct:   896 ALQDYQERNAKLTAQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKD-IE 954

Query:    87 ELTKGSIEAITLKSL-DLDVLNFTTENSHSFSI--SLY---------SQDTVDRLQQEED 134
             +L     +A   K+  D  + N   E +H   +   L          +Q T + LQ  ED
Sbjct:   955 DLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAED 1014

Query:   135 ARNXXXXXXXXXXXXNGGLKKDIE---DLEGDVEKQKRKIEGDLKLTQEAVADLERNKKE 191
               N               L+  +E    + GDVEK KRK+EGDLKLTQEAVADLERNKKE
Sbjct:  1015 KINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKE 1074

Query:   192 LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKXXXXXXXXXXXXXXXXXXSRAKAEKQ 251
             LEQTIQRKDKE++S+TAKLEDEQ +V K+Q+QIK                  +RAKAEKQ
Sbjct:  1075 LEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEVEAERQARAKAEKQ 1134

Query:   252 XXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 311
                                  TSAQIELNKKREAE+SKLRRDLEEANIQHESTLANLRKK
Sbjct:  1135 RADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEANIQHESTLANLRKK 1194

Query:   312 HNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQ 371
             HNDAV+EM EQ+DQLNKLK KAEH+R   HNE N TR A DQL R+KAA EKIAKQLQH 
Sbjct:  1195 HNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQTRTACDQLGRDKAAQEKIAKQLQHT 1254

Query:   372 LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDT 431
             LNEVQ KLDETNR+LNDFDA+KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDT
Sbjct:  1255 LNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDT 1314

Query:   432 KRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY 491
             KRLADEE RERATLLGKFRNLEHD+DN+REQ+EEEAEGKADLQRQLSKANA+AQ+WR+KY
Sbjct:  1315 KRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSKANAEAQVWRSKY 1374

Query:   492 ESEGVARAXXXXXXXXXXR-RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548
             ES+GVAR+          + R+ +    +++  ++C        RL    E+ Q +++
Sbjct:  1375 ESDGVARSEELEEAKRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLEVD 1432

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005859 "muscle myosin complex" evidence=ISS;IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0042692 "muscle cell differentiation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0031033 "myosin filament organization" evidence=IMP

WB|WBGene00006789 unc-54 [Caenorhabditis elegans (taxid:6239)]

 Score = 853 (305.3 bits), Expect = 7.3e-84, P = 7.3e-84
 Identities = 197/546 (36%), Positives = 303/546 (55%)

Query:    14 LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDT 73
             L   + +L +    L   +A +K  S + S+L  QL + E + + + + K  +  ++E  
Sbjct:   903 LESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAKKKIEAEVEAL 962

Query:    74 KR-LADEESSGWVEELTKGS----IEAIT--LKSLDLDVLNFTTENSHSFSISLYSQDTV 126
             K+ + D E S    E  K S    I ++   ++  D  +     E  H   I+   +  +
Sbjct:   963 KKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEIN---RKLM 1019

Query:   127 DRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEKQKRKIEGDLKLTQEAVA 183
             + LQ EED  N               L+  +E       D++KQKRK+EG+LK+ QE + 
Sbjct:  1020 EDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRARADLDKQKRKVEGELKIAQENID 1079

Query:   184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKXXXXXXXXXXXXXXXXXX 243
             +  R + +LE  +++K+ E+ S++++LEDEQ LV K Q+QIK                  
Sbjct:  1080 ESGRQRHDLENNLKKKESELHSVSSRLEDEQALVSKLQRQIKDGQSRISELEEELENERQ 1139

Query:   244 SRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAEMSKLRRDLEEANIQHES 303
             SR+KA++                      T+AQ+E+NKKREAE++KLRRDLEEAN+ HE+
Sbjct:  1140 SRSKADRAKSDLQRELEELGEKLDEQGGATAAQVEVNKKREAELAKLRRDLEEANMNHEN 1199

Query:   304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
              L  LRKKH DAV+E+ +Q+DQLNK K K E ++  A  +  +  A  DQ    K   EK
Sbjct:  1200 QLGGLRKKHTDAVAELTDQLDQLNKAKAKVEKDKAQAVRDAEDLAAQLDQETSGKLNNEK 1259

Query:   364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423
             +AKQ + QL E+Q K DE +R L DF + K +L  EN DL+RQLE+AESQV+QL+++K  
Sbjct:  1260 LAKQFELQLTELQSKADEQSRQLQDFTSLKGRLHSENGDLVRQLEDAESQVNQLTRLKSQ 1319

Query:   424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD 483
             LT+QLE+ +R ADEE RER T+  + +N +H+ + ++E LEEE EGK ++ RQLSKANAD
Sbjct:  1320 LTSQLEEARRTADEEARERQTVAAQAKNYQHEAEQLQESLEEEIEGKNEILRQLSKANAD 1379

Query:   484 AQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKECRNYSTELFRLKGAYEE 542
              Q W+ ++E EG+ +A           +++++L   LDA+  +  +      RL G  ++
Sbjct:  1380 IQQWKARFEGEGLLKADELEDAKRRQAQKINELQEALDAANSKNASLEKTKSRLVGDLDD 1439

Query:   543 AQEQLE 548
             AQ  +E
Sbjct:  1440 AQVDVE 1445

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0006936 "muscle contraction" evidence=IMP

GO:0048017 "inositol lipid-mediated signaling" evidence=IPI

GO:0043050 "pharyngeal pumping" evidence=IPI

GO:0018991 "oviposition" evidence=IMP

GO:0005859 "muscle myosin complex" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|K7GMH0 K7GMH0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 200/563 (35%), Positives = 303/563 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q ++     +LND +       K K+ +E    ++  +LE+ E   
Sbjct:    68 EKMVSLLQEK-NDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMN 126

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAITLKSLDLD--VLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T +   LD  +   T
Sbjct:   127 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLT 186

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q  +D LQ EED  N               L+  +E    +  D+E+
Sbjct:   187 KEKK---ALQEAHQQALDDLQAEEDKVNTLTKSKVKLEQQVDDLEGSLEQEKKVRMDLER 243

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE++ DLE +K +LE+ +++K+ EI    +K+EDEQ L  + QK++K 
Sbjct:   244 AKRKLEGDLKLTQESIMDLENDKLQLEEKLKKKEFEINQQNSKIEDEQALALQLQKKLKE 303

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EK                      TS QIE+NKKREAE
Sbjct:   304 NQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAE 363

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++
Sbjct:   364 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDD 423

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               +  +Q+ + KA  EK+++ L+ Q NE + KL+E  RSLNDF   + KL  EN +L RQ
Sbjct:   424 VTSNMEQIIKAKANLEKMSRTLEDQANEYRAKLEEAQRSLNDFSTQRAKLQTENGELSRQ 483

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE E+ +SQL++ K+S T QLED KR  +EEG+ +  L    ++  HD D +REQ EEE
Sbjct:   484 LEEKEALISQLTRGKLSYTQQLEDLKRQLEEEGKAKNALAHALQSARHDCDLLREQYEEE 543

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR LSKAN++   WRTKYE++ + R            +R+ D    ++A   +
Sbjct:   544 TEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAK 603

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:   604 CSSLEKTKHRLQNEIEDLMVDVE 626

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

ZFIN|ZDB-GENE-080930-1 smyhc3 "slow myosin heavy chain 3" [Danio rerio (taxid:7955)]

 Score = 826 (295.8 bits), Expect = 5.3e-81, P = 5.3e-81
 Identities = 201/563 (35%), Positives = 307/563 (54%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q  +     +L D +       K K+ +E    +L  +LE+ E   
Sbjct:   877 EKMVSLLQEK-NDLQLAVQTEQDNLCDAEERCEGLIKNKIQLEAKAKELTERLEDEEEMN 935

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAIT--LKSLDLDVLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T  + +LD  +   T
Sbjct:   936 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAALDEIIAKLT 995

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q T+D LQ EED  N               L+  +E    L  D+E+
Sbjct:   996 KEKK---ALQEAHQQTLDDLQSEEDKVNTLTKAKAKLEQQVDDLEGSLEQEKKLRMDLER 1052

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE+V DLE +K++LE+ +++KD EI+ L++++EDEQ +  + QK++K 
Sbjct:  1053 AKRKLEGDLKLTQESVMDLENDKQQLEERLKKKDFEISQLSSRIEDEQAMAAQLQKKLKE 1112

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EKQ                     T+AQIE+NKKREAE
Sbjct:  1113 LQARIEELEEELEAERAARAKVEKQRADLSRELEEISERLEEAGGATAAQIEMNKKREAE 1172

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               KLRRDLEEA +QHE+T + LRKKH D+VS++GEQID L ++K K E E++    E ++
Sbjct:  1173 FQKLRRDLEEATLQHEATASTLRKKHADSVSDLGEQIDNLQRVKQKLEKEKSELRLELDD 1232

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               +  +Q+A+ KA  EK+ + L+ Q++E + K +E  RS+NDF   K KL  EN +L RQ
Sbjct:  1233 VVSNMEQIAKAKANLEKMCRTLEDQMSEYRTKYEEGQRSINDFTMKKAKLQTENGELSRQ 1292

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE +S VSQL++ K S T Q+ED KR  +EE + +  L    ++  HD + +REQ EEE
Sbjct:  1293 LEEKDSLVSQLTRGKQSYTQQIEDLKRQLEEEVKAKNALAHAVQSARHDAELLREQYEEE 1352

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR LSKAN++   WRTKYE++ + R            +R+ D    ++A   +
Sbjct:  1353 QEAKAELQRSLSKANSEVAQWRTKYETDAIQRTEELEDAKKKLAQRLQDAEEAVEAVNAK 1412

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:  1413 CSSLEKTKHRLQNEIEDLMVDVE 1435

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N2G0 MYH6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 825 (295.5 bits), Expect = 6.9e-81, P = 6.9e-81
 Identities = 199/563 (35%), Positives = 304/563 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q ++     +LND +       K K+ +E    ++  +LE+ E   
Sbjct:   878 EKMVSLLQEK-NDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMN 936

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAITLKSLDLD--VLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T +   LD  +   T
Sbjct:   937 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLT 996

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q  +D LQ EED  N               L+  +E    +  D+E+
Sbjct:   997 KEKK---ALQEAHQQALDDLQAEEDKVNTLTKSKVKLEQQVDDLEGSLEQEKKVRMDLER 1053

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE++ DL+ +K +LE+ +++K+ +I  L +K+EDEQ L  + QK++K 
Sbjct:  1054 AKRKLEGDLKLTQESIMDLDNDKLQLEEKLKKKEFDINQLNSKIEDEQALALQLQKKLKE 1113

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EK                      TS QIE+NKKREAE
Sbjct:  1114 NQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAE 1173

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++
Sbjct:  1174 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDD 1233

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               +  +Q+ + KA  EK+++ L+ Q NE + KL+E  RSLNDF   + KL  EN +L RQ
Sbjct:  1234 VTSNMEQIIKAKANLEKMSRTLEDQANEYRAKLEEAQRSLNDFSTQRAKLQTENGELSRQ 1293

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE E+ +SQL++ K+S T QLED KR  +EEG+ +  L    ++  HD D +REQ EEE
Sbjct:  1294 LEEKEALISQLTRGKLSYTQQLEDLKRQLEEEGKAKNALAHALQSARHDCDLLREQYEEE 1353

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR LSKAN++   WRTKYE++ + R            +R+ D    ++A   +
Sbjct:  1354 TEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAK 1413

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:  1414 CSSLEKTKHRLQNEIEDLMVDVE 1436

GO:0060420 "regulation of heart growth" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043462 "regulation of ATPase activity" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030049 "muscle filament sliding" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007522 "visceral muscle development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0006941 "striated muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002027 "regulation of heart rate" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-110401-4 si:ch211-24n20.3 "si:ch211-24n20.3" [Danio rerio (taxid:7955)]

 Score = 822 (294.4 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 199/563 (35%), Positives = 306/563 (54%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q  +     +L D +       K K+ +E    +L  +LE+ E   
Sbjct:   881 EKMVSLLQEK-NDLQLAVQSEQDNLCDAEERCEGLIKNKIQLEAKAKELTERLEDEEEMN 939

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAIT--LKSLDLDVLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T  + +LD  +   T
Sbjct:   940 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAALDEIIAKLT 999

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q T+D LQ EED  N               L+  +E    L  D+E+
Sbjct:  1000 KEKK---ALQEAHQQTLDDLQSEEDKVNTLTKAKAKLEQQVDDLEGSLEQEKKLRMDLER 1056

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE+V DLE +K++LE+ +++KD EI+ L++++EDEQ +  + QK++K 
Sbjct:  1057 AKRKLEGDLKLTQESVMDLENDKQQLEERLKKKDFEISQLSSRIEDEQAMAAQLQKKLKE 1116

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EKQ                     T+AQIE+NKKREAE
Sbjct:  1117 LQARIEELEEELEAERAARAKVEKQRADLSRELEEISERLEEAGGATAAQIEMNKKREAE 1176

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               KLRRDLEEA +QHE+T + LRKKH D+VS++GEQID L ++K K E E++    E ++
Sbjct:  1177 FQKLRRDLEEATLQHEATASTLRKKHADSVSDLGEQIDNLQRVKQKLEKEKSELRLELDD 1236

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               +  +Q+ + KA  EK+ + L+ Q++E + K +E  RS+NDF   K KL  EN +L RQ
Sbjct:  1237 VVSNMEQIVKAKANLEKMCRTLEDQMSEYRTKYEEAQRSINDFTMQKAKLQTENGELSRQ 1296

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE +S VSQL++ K S T Q+ED +R  +EE + +  L    ++  HD + +REQ EEE
Sbjct:  1297 LEEKDSLVSQLTRGKQSYTQQIEDLRRQLEEEVKAKNALAHAVQSARHDAELLREQYEEE 1356

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR LSKAN++   WRTKYE++ + R            +R+ D    ++A   +
Sbjct:  1357 QEAKAELQRSLSKANSEVAQWRTKYETDAIQRTEELEDAKKKLAQRLQDAEEAVEAVNAK 1416

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:  1417 CSSLEKTKHRLQNEIEDLMVDVE 1439

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97255 Myh6 "myosin, heavy polypeptide 6, cardiac muscle, alpha" [Mus musculus (taxid:10090)]

 Score = 820 (293.7 bits), Expect = 2.3e-80, P = 2.3e-80
 Identities = 198/563 (35%), Positives = 304/563 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q ++     +LND +       K K+ +E    ++  +LE+ E   
Sbjct:   877 EKMVSLLQEK-NDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMTERLEDEEEMN 935

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAITLKSLDLD--VLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T +   LD  +   T
Sbjct:   936 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLT 995

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q  +D LQ EED  N               L+  +E    +  D+E+
Sbjct:   996 KEKK---ALQEAHQQALDDLQAEEDKVNTLTKSKVKLEQQVDDLEGSLEQEKKVRMDLER 1052

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE++ DLE +K +LE+ +++K+ +I+   +K+EDEQ L  + QK++K 
Sbjct:  1053 AKRKLEGDLKLTQESIMDLENDKLQLEEKLKKKEFDISQQNSKIEDEQALALQLQKKLKE 1112

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EK                      TS QIE+NKKREAE
Sbjct:  1113 NQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAE 1172

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K K E E++    E ++
Sbjct:  1173 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDD 1232

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               +  +Q+ + KA  EK+++ L+ Q NE + KL+E  RSLNDF   + KL  EN +L RQ
Sbjct:  1233 VTSNMEQIIKAKANLEKVSRTLEDQANEYRVKLEEAQRSLNDFTTQRAKLQTENGELARQ 1292

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE E+ +SQL++ K+S T Q+ED KR  +EEG+ +  L    ++  HD D +REQ EEE
Sbjct:  1293 LEEKEALISQLTRGKLSYTQQMEDLKRQLEEEGKAKNALAHALQSSRHDCDLLREQYEEE 1352

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR LSKAN++   WRTKYE++ + R            +R+ D    ++A   +
Sbjct:  1353 MEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEAVNAK 1412

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:  1413 CSSLEKTKHRLQNEIEDLMVDVE 1435

GO:0000146 "microfilament motor activity" evidence=ISO;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001725 "stress fiber" evidence=IDA

GO:0002026 "regulation of the force of heart contraction" evidence=IMP

GO:0002027 "regulation of heart rate" evidence=ISO;IMP

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005859 "muscle myosin complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006936 "muscle contraction" evidence=ISO

GO:0006941 "striated muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=ISO;IMP

GO:0007522 "visceral muscle development" evidence=IMP

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030016 "myofibril" evidence=ISO;IDA

GO:0030018 "Z disc" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=IMP

GO:0030049 "muscle filament sliding" evidence=ISO

GO:0030239 "myofibril assembly" evidence=IMP

GO:0030509 "BMP signaling pathway" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=ISO

GO:0030899 "calcium-dependent ATPase activity" evidence=ISO

GO:0032982 "myosin filament" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043462 "regulation of ATPase activity" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=ISO

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IDA

GO:0060420 "regulation of heart growth" evidence=IDA

ZFIN|ZDB-GENE-061027-393 vmhcl "ventricular myosin heavy chain-like" [Danio rerio (taxid:7955)]

 Score = 816 (292.3 bits), Expect = 6.3e-80, P = 6.3e-80
 Identities = 198/563 (35%), Positives = 303/563 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAA-----KKKLSIENS--DLLRQLEEAESQV 56
             EK+   LQ + N++Q ++     +L D +       K K+ +E    +L  +LE+ E   
Sbjct:   882 EKMVTLLQEK-NDLQLQVQAEQDNLCDAEERCEGLIKNKIQMEAKAKELTERLEDEEEMN 940

Query:    57 SQLSKIKISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAIT--LKSLDLDVLNFT 109
             ++L+  K  L  +  + K+  D  E +   VE+    T+  ++ +T  + +LD  +   T
Sbjct:   941 AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAALDDIIAKLT 1000

Query:   110 TENSHSFSISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEK 166
              E     ++    Q T+D LQ EED  N               L+  +E    +  D+E+
Sbjct:  1001 KEKK---ALQEAHQQTLDDLQSEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKIRMDLER 1057

Query:   167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKX 226
              KRK+EGDLKLTQE++ DLE +K++LE+ +++KD EI+ L +K++DEQ ++ + QK++K 
Sbjct:  1058 AKRKLEGDLKLTQESIMDLENDKQQLEEKLKKKDFEISQLNSKIDDEQSIIIQLQKKLKE 1117

Query:   227 XXXXXXXXXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 286
                              +RAK EKQ                     T+AQIE+NKKREAE
Sbjct:  1118 LQARVEELEEELEAERAARAKVEKQRADLARELEEISERLEEAGGATAAQIEMNKKREAE 1177

Query:   287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
               KLRRDLEEA +QHE+T A LRKK  D+V+E+GEQID L ++K K E E++    E ++
Sbjct:  1178 FQKLRRDLEEATLQHEATAATLRKKQADSVAELGEQIDNLQRVKQKLEKEKSELRLELDD 1237

Query:   347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
               ++ + + + K   EK+ + L+ Q+NE + K +E  RSLNDF   K KL  EN +  RQ
Sbjct:  1238 VASSMEHIVKSKTNMEKVNRTLEDQMNEYRNKCEEYQRSLNDFTTQKAKLQAENDEFSRQ 1297

Query:   407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             LEE ES VSQL++ K S + QLED KR  DEE + +  L    ++  HD D +REQ EEE
Sbjct:  1298 LEEKESLVSQLTRGKNSFSQQLEDLKRQLDEEIKAKNALAHALQSARHDTDLLREQYEEE 1357

Query:   467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKE 525
              E KA+LQR +SKAN +   WRTKYE++ + R            +R+ +    ++A   +
Sbjct:  1358 QEAKAELQRSMSKANTEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAK 1417

Query:   526 CRNYSTELFRLKGAYEEAQEQLE 548
             C +      RL+   E+    +E
Sbjct:  1418 CSSLEKTKHRLQNEIEDLMVDVE 1440

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

RGD|3138 Myh3 "myosin, heavy chain 3, skeletal muscle, embryonic" [Rattus norvegicus (taxid:10116)]

 Score = 814 (291.6 bits), Expect = 1.0e-79, P = 1.0e-79
 Identities = 202/556 (36%), Positives = 300/556 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
             EK   QLQ Q  E +  LD   R  +    AK +L  +  ++  + E+ E   ++L+  K
Sbjct:   884 EKNDLQLQVQA-ESENLLDAEERC-DQLIKAKFQLEAKIKEVTERAEDEEEINAELTAKK 941

Query:    64 ISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAIT--LKSLDLDVLNFTTENSHSF 116
               L  +  + K+  D  E +   VE+    T+  ++ +T  L  LD  +   T E     
Sbjct:   942 RKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEELAGLDETIAKLTREKK--- 998

Query:   117 SISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEKQKRKIEG 173
             ++    Q T+D LQ EED  N               L+  +E    L  D+E+ KRK+EG
Sbjct:   999 ALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLESSLEQEKKLRVDLERNKRKLEG 1058

Query:   174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKXXXXXXXX 233
             DLKL QE++ DLE +K++L++ +++KD E + L +K+EDEQ L  + QK+IK        
Sbjct:  1059 DLKLAQESILDLENDKQQLDERLKKKDFEYSQLQSKVEDEQTLSLQLQKKIKELQARIEE 1118

Query:   234 XXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAEMSKLRRD 293
                       +RAK EKQ                     TS QIELNKKREAE  KLRRD
Sbjct:  1119 LEEEIEAERATRAKTEKQRSDYARELEELSERLEEAGGVTSTQIELNKKREAEFLKLRRD 1178

Query:   294 LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQ 353
             LEEA +QHE+T+A LRKKH D+ +E+ EQID L ++K K E E++    E ++  ++ + 
Sbjct:  1179 LEEATLQHEATVATLRKKHADSAAELAEQIDNLQRVKQKLEKEKSEFKLEIDDLSSSVES 1238

Query:   354 LAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413
             +++ KA  EKI + L+ QL+E +GK +ET RSL++    K +L  E  +L RQLEE ES 
Sbjct:  1239 VSKSKANLEKICRTLEDQLSEARGKNEETQRSLSELTTQKSRLQTEAGELSRQLEEKESI 1298

Query:   414 VSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADL 473
             VSQLS+ K + T Q+E+ KR  +EE + +  L    ++  HD D +REQ EEE EGKA+L
Sbjct:  1299 VSQLSRSKQAFTQQIEELKRQLEEENKAKNALAHALQSSRHDCDLLREQYEEEQEGKAEL 1358

Query:   474 QRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKECRNYSTE 532
             QR LSKAN++   WRTKYE++ + R            +R+ D   +++A   +C +    
Sbjct:  1359 QRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418

Query:   533 LFRLKGAYEEAQEQLE 548
               RL+G  E+    +E
Sbjct:  1419 KQRLQGEVEDLMVDVE 1434

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISO

GO:0030016 "myofibril" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0043292 "contractile fiber" evidence=ISO

UNIPROTKB|G3V6D8 Myh4 "Myosin-4" [Rattus norvegicus (taxid:10116)]

 Score = 814 (291.6 bits), Expect = 1.0e-79, P = 1.0e-79
 Identities = 202/556 (36%), Positives = 300/556 (53%)

Query:     4 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
             EK   QLQ Q  E +  LD   R  +    AK +L  +  ++  + E+ E   ++L+  K
Sbjct:   884 EKNDLQLQVQA-ESENLLDAEERC-DQLIKAKFQLEAKIKEVTERAEDEEEINAELTAKK 941

Query:    64 ISLTTQLEDTKRLAD--EESSGWVEE---LTKGSIEAIT--LKSLDLDVLNFTTENSHSF 116
               L  +  + K+  D  E +   VE+    T+  ++ +T  L  LD  +   T E     
Sbjct:   942 RKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEELAGLDETIAKLTREKK--- 998

Query:   117 SISLYSQDTVDRLQQEEDARNXXXXXXXXXXXXNGGLKKDIED---LEGDVEKQKRKIEG 173
             ++    Q T+D LQ EED  N               L+  +E    L  D+E+ KRK+EG
Sbjct:   999 ALQEAHQQTLDDLQAEEDKVNSLSKLKSKLEQQVDDLESSLEQEKKLRVDLERNKRKLEG 1058

Query:   174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKXXXXXXXX 233
             DLKL QE++ DLE +K++L++ +++KD E + L +K+EDEQ L  + QK+IK        
Sbjct:  1059 DLKLAQESILDLENDKQQLDERLKKKDFEYSQLQSKVEDEQTLSLQLQKKIKELQARIEE 1118

Query:   234 XXXXXXXXXXSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAEMSKLRRD 293
                       +RAK EKQ                     TS QIELNKKREAE  KLRRD
Sbjct:  1119 LEEEIEAERATRAKTEKQRSDYARELEELSERLEEAGGVTSTQIELNKKREAEFLKLRRD 1178

Query:   294 LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQ 353
             LEEA +QHE+T+A LRKKH D+ +E+ EQID L ++K K E E++    E ++  ++ + 
Sbjct:  1179 LEEATLQHEATVATLRKKHADSAAELAEQIDNLQRVKQKLEKEKSEFKLEIDDLSSSVES 1238

Query:   354 LAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413
             +++ KA  EKI + L+ QL+E +GK +ET RSL++    K +L  E  +L RQLEE ES 
Sbjct:  1239 VSKSKANLEKICRTLEDQLSEARGKNEETQRSLSELTTQKSRLQTEAGELSRQLEEKESI 1298

Query:   414 VSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADL 473
             VSQLS+ K + T Q+E+ KR  +EE + +  L    ++  HD D +REQ EEE EGKA+L
Sbjct:  1299 VSQLSRSKQAFTQQIEELKRQLEEENKAKNALAHALQSSRHDCDLLREQYEEEQEGKAEL 1358

Query:   474 QRQLSKANADAQLWRTKYESEGVARAXXXXXXXXX-XRRVDDLAAELDASQKECRNYSTE 532
             QR LSKAN++   WRTKYE++ + R            +R+ D   +++A   +C +    
Sbjct:  1359 QRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418

Query:   533 LFRLKGAYEEAQEQLE 548
               RL+G  E+    +E
Sbjct:  1419 KQRLQGEVEDLMVDVE 1434

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05661	MYSA_DROME	No assigned EC number	0.8221	0.6899	0.1962	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	558
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	5e-91
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	4e-20
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-12
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
pfam04156	186	pfam04156, IncA, IncA protein	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	4e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	5e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	6e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.001
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.001
TIGR03017	444	TIGR03017, EpsF, chain length determinant protein	0.001
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	0.001
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
PRK05729	874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	0.002
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.003
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.004
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.004
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	0.004

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  297 bits (763), Expect = 5e-91
 Identities = 217/375 (57%), Positives = 278/375 (74%), Gaps = 1/375 (0%)

Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
           +LER K+ELE  + RK+ E++ L++KLEDEQ LV + QK+IKEL+ARI ELEEE+EAER 
Sbjct: 1   ELERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60

Query: 244 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
           +RAKAEK RADL+RELEEL ERLEEAGGAT+AQIELNKKREAE++KLR+DLEEAN+QHE 
Sbjct: 61  ARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEE 120

Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
            LA LRKKH DA++E+ EQI+QL K K KAE E++    E ++  A  DQ+A+ K   EK
Sbjct: 121 ALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEK 180

Query: 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423
            AKQL+ QL+E+Q KLDE  R LND  + K +L  ENSDL RQLEEAE+QVS LSK+K  
Sbjct: 181 KAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQ 240

Query: 424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD 483
           L +QLE+ KR  +EE RERA L  + R LEHD+D++REQLEEE+E KA+L+RQLSKANA+
Sbjct: 241 LESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAE 300

Query: 484 AQLWRTKYESEGVARAEELEESKSE-ERRVDDLAAELDASQKECRNYSTELFRLKGAYEE 542
            Q WR+K+ESEG  RAEELEE K +  +++ +L    +A+  +C +      RL+   E+
Sbjct: 301 IQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELED 360

Query: 543 AQEQLEAVRRENKNL 557
            Q +LE        L
Sbjct: 361 LQIELERANAAASEL 375

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 136/520 (26%), Positives = 232/520 (44%), Gaps = 36/520 (6%)

Query: 1   AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 60
              EK AKQL+ QL+E+Q KLDE  R LND  + K +L  ENSDL RQLEEAE+QVS LS
Sbjct: 176 LNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLS 235

Query: 61  KIKISLTTQLEDTKRLADEES---SGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFS 117
           K+K  L +QLE+ KR  +EES   +    +L +   +  +L+    +      E     S
Sbjct: 236 KLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLS 295

Query: 118 -ISLYSQDTVDRLQQEEDARNQLFQQ-KKKLEQENGGLKKDIEDLE---GDVEKQKRKIE 172
             +   Q    + + E   R +  ++ KKKL Q+   L++  E        +EK K +++
Sbjct: 296 KANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQ 355

Query: 173 GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIE 232
            +L+  Q  +        ELE+  +  DK +A    K+++ Q  +   Q++ + L   + 
Sbjct: 356 SELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELF 415

Query: 233 ELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
            L+ E+E  +       ++  +L  E+ +L ++L E G       +  ++ EAE  +L+ 
Sbjct: 416 RLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQA 475

Query: 293 DLEEA----------------NIQH------------ESTLANLRKKHNDAVSEMGEQID 324
            LEEA                 +              E    N RK H  A+  +   ++
Sbjct: 476 ALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLE 535

Query: 325 QLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNR 384
              K K +A   +     + N    A D   +  A  +K  K+ Q Q+ E+Q +++E  R
Sbjct: 536 AEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQR 595

Query: 385 SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERAT 444
           +  D            + L  +LEE  S + Q  + +    T+L +     +E   + ++
Sbjct: 596 AREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSS 655

Query: 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADA 484
           L+ + R LE ++  ++  L+E        + +  KA ADA
Sbjct: 656 LIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADA 695

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 137/564 (24%), Positives = 235/564 (41%), Gaps = 42/564 (7%)

Query: 9   QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTT 68
           QLQ ++ E++ ++ E    L    AA+ K     +DL R+LEE              L+ 
Sbjct: 36  QLQKKIKELEARIRELEEELEAERAARAKAEKARADLSRELEE--------------LSE 81

Query: 69  QLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDR 128
           +LE+       +      EL K     +     DL+  N   E     +++   +   D 
Sbjct: 82  RLEEAGGATAAQI-----ELNKKREAELAKLRKDLEEANLQHEE----ALATLRKKHQDA 132

Query: 129 LQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDV----------EKQKRKIEGDLKLT 178
           + +  +   QL +QK K E+E   L+ +++DL   +          EK+ +++E  L   
Sbjct: 133 INELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSEL 192

Query: 179 QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV 238
           Q  + +L+R   +L     R   E + LT +LE+ +  V    K   +L++++EE +  +
Sbjct: 193 QVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSL 252

Query: 239 EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
           E E + RA  + Q   L  +L+ L E+LEE   A +       K  AE+ + R   E   
Sbjct: 253 EEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEG 312

Query: 299 IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
                 L  L+KK N  +SE+ E  +  N      E  ++   +E  + +   ++     
Sbjct: 313 ALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAA 372

Query: 359 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
           +  EK  K     L E + K+DE    L+      + LS E   L  +LEE + QV  L 
Sbjct: 373 SELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALR 432

Query: 419 KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
           +   +L  ++ D      E GR    L    R LE + D ++  LEE        + ++ 
Sbjct: 433 RENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVL 492

Query: 479 KANADAQLWRTKYESEGVARAEELEES-KSEERRVDDLAAELDASQKECRNYSTELFRLK 537
           +A  +    R++ E     + EE E + K+ +R ++ L A L+A  K       E  RLK
Sbjct: 493 RAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAK----GKAEASRLK 548

Query: 538 GAYE----EAQEQLEAVRRENKNL 557
              E    E +  L+   + N   
Sbjct: 549 KKLEGDINELEIALDHANKANAEA 572

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 72.1 bits (177), Expect = 5e-13
 Identities = 79/337 (23%), Positives = 160/337 (47%), Gaps = 25/337 (7%)

Query: 123 QDTVDRLQQEEDARNQLFQQKKKLE------QENGGLKKDIEDLEGDV--------EKQK 168
           + T + L++ ED   +L +Q +KLE      +    LK ++ +LE  +         K+ 
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241

Query: 169 RKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQ 228
            ++E +L   +E + +L+   +E E+ I+    E+  L  +LE+ Q  + + +++I+EL+
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 229 ARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 288
             I  L E +E       + E +  +L   LEEL E++E    A   ++E  +    E+ 
Sbjct: 302 GEISLLRERLE-------ELENELEELEERLEELKEKIE----ALKEELEERETLLEELE 350

Query: 289 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTR 348
           +L  +LEEA  + E  L+ L ++  +    + E++ +L     +  +E      E  +  
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 349 AAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLE 408
              ++L+      ++  K+L+ +L E+Q +L+E N  L + +   ++L     +L R+L 
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 409 EAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATL 445
           E + ++ +L K   SL  +L+  +         RA L
Sbjct: 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVL 507

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 64/301 (21%), Positives = 133/301 (44%), Gaps = 6/301 (1%)

Query: 39  SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITL 98
             E  +L  ++EE E ++++L K    L  +LE+ +   ++      E   + S     L
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 99  KSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE 158
             L+ +V       +    +S    +    +++ E+   +  ++  + E E   L+  IE
Sbjct: 736 ARLEAEVEQLEERIAQ---LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 159 DLEGDVEKQKRKI---EGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG 215
            L+ +++  +  +     +L L  E  A+L    + LE+ I   ++ +  L  ++E+   
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 216 LVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSA 275
            +     +I+EL+  IEELE E+EA    RA  E+  A L  ELEEL E L E     S 
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 276 QIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEH 335
                ++   ++++L   LE   ++ ++    L ++++  + E     +++   + +A  
Sbjct: 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972

Query: 336 E 336
            
Sbjct: 973 R 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 69.3 bits (170), Expect = 3e-12
 Identities = 122/556 (21%), Positives = 244/556 (43%), Gaps = 41/556 (7%)

Query: 4   EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA----ESQVSQL 59
           EK    L  +L E+  +L+E   +        KK   E + L + LEEA    E  ++ L
Sbjct: 66  EKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATL 125

Query: 60  SKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSIS 119
            K       +L +      ++ +   +E ++   E   L +  LD +     N+   +  
Sbjct: 126 RKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLA-QLDQIAKAKLNAEKKAKQ 184

Query: 120 LYSQDTVDRLQQEEDAR--NQLFQQKKKLEQENGGLKKDIEDLEGDVE---KQKRKIEGD 174
           L SQ +  +++ +E  R  N L  QK +L+ EN  L + +E+ E  V    K K ++E  
Sbjct: 185 LESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQ 244

Query: 175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
           L+  + ++ +  R +  L+  +++ + ++ SL  +LE+E     + ++Q+ +  A I++ 
Sbjct: 245 LEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQW 304

Query: 235 EEEVEAERQSRAKA-EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRD 293
             + E+E   RA+  E+ +  L +++ EL E  E A     +  +   + ++E+  L+ +
Sbjct: 305 RSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIE 364

Query: 294 LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQ 353
           LE AN    S L   +K  +  ++E   ++D+L      A+ E      E    +   ++
Sbjct: 365 LERAN-AAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEE 423

Query: 354 LAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ 413
           L  +  A  +  K LQ +++++  +L E  R++++ + A+++L  E  +L   LEEAE+ 
Sbjct: 424 LKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAA 483

Query: 414 VSQ-----------------------------LSKIKISLTTQLEDTKRLADEEGRERAT 444
           +                                   + +    +E  +   + E + +A 
Sbjct: 484 LELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAE 543

Query: 445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEE 504
                + LE DI+ +   L+   +  A+ Q+ + K     +  +T+ E E  AR +  E+
Sbjct: 544 ASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQ 603

Query: 505 SKSEERRVDDLAAELD 520
               ERR   L AEL+
Sbjct: 604 LAVAERRATALEAELE 619

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 76/347 (21%), Positives = 153/347 (44%), Gaps = 21/347 (6%)

Query: 221  QKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 280
            ++++ EL+A++E+LEEE+++ +      E    +L R+LEEL  +LEE       ++   
Sbjct: 673  EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR----ELAAL 728

Query: 281  KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEH----- 335
            ++   ++     +LEE   + E  L  L+++  +   E+    + L KLK + E      
Sbjct: 729  EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 336  -----ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFD 390
                 E      E        D L RE  + E+  ++L+ ++ E++ +++E    L++ +
Sbjct: 789  QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848

Query: 391  AAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFR 450
               ++L  E  +L  +LEE E++  +L      L  + E+ +    E   E A L  +  
Sbjct: 849  EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908

Query: 451  NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEER 510
             L   ++ +  +LE       +L+ +L +   D        E+E     E LEE      
Sbjct: 909  KLRERLEELEAKLERLEVELPELEEELEEEYED------TLETELEREIERLEEEIEALG 962

Query: 511  RVDDLA-AELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKN 556
             V+  A  E +  ++      ++   L+ A E+  E +E + +E + 
Sbjct: 963  PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.1 bits (159), Expect = 7e-11
 Identities = 55/279 (19%), Positives = 125/279 (44%), Gaps = 21/279 (7%)

Query: 126 VDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGD----------VEKQKRKIEGDL 175
           V RL++  +   +L ++ K+ E+E   L  ++++LE            +E++  +++ +L
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE 235
                 ++ LE+ K+ L + +   ++++  L A+LE+ +  + +  +++ EL+ ++EEL+
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350

Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAGGA---TSAQIELNKKREAEMSKLRR 292
           EE+E+      + E +  +L   LEEL E+LE           QI         +     
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410

Query: 293 DLEEA-NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351
            LE+      +     L+K     + E+  ++++L +   + + E             A 
Sbjct: 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-------EEAL 463

Query: 352 DQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFD 390
           ++L  E    E+     + +L ++Q +LD   R   + +
Sbjct: 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 73/355 (20%), Positives = 142/355 (40%), Gaps = 54/355 (15%)

Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
            +LE   +ELE+ I   +K +A L  +LE+ +  + + +K+++EL  +I  L +++    
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 243 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 302
               + E++ A L++EL EL   +EE         E   + EAE+ +L   +E+   + +
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 303 STLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATE 362
           +    L +              +L  L  +A            N R   + L R  AATE
Sbjct: 800 ALREALDELRA-----------ELTLLNEEA-----------ANLRERLESLERRIAATE 837

Query: 363 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKI 422
           +  + L+ Q+ E+   ++     + + +                +EE ES++  L   + 
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEIEELEE--------------LIEELESELEALLNERA 883

Query: 423 SLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEE----EAEGKADLQRQLS 478
           SL   L   +   +E   E   L  K   L  +++ +RE+L +        +  +     
Sbjct: 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943

Query: 479 KANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTEL 533
           + + +  L               LEE+++ E +++D   E     K   N   EL
Sbjct: 944 RLSEEYSL--------------TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 70/326 (21%), Positives = 152/326 (46%), Gaps = 18/326 (5%)

Query: 186 ERNKKELEQTIQRKDKEIAS--LTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
           ER K E  Q + ++ +E     L  + E  +      ++Q+  L+  +E+L EE+    +
Sbjct: 206 EREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265

Query: 244 SRAKAEKQRADLARELEELGE----RLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 299
              + E+   +L +++++LGE    R++E  G   A+I   ++  AE  +   D EE   
Sbjct: 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325

Query: 300 QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKA 359
           + E+ +  L  +      E+  +I++  K + K   E      E  + RA  +++ +E A
Sbjct: 326 KLEAEIDKLLAEI----EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381

Query: 360 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSK 419
            T    K  + +L +++ +++E  R L+      ++LS E +DL   +   E+++++L +
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441

Query: 420 IKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSK 479
            K     +++  +   ++   + +    +  +L+ + D + ++L +       LQR+L++
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK-------LQRELAE 494

Query: 480 ANADAQLWRTKYESEGVARAEELEES 505
           A A A+         G A  E L+ S
Sbjct: 495 AEAQARASEE-RVRGGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 6e-10
 Identities = 67/346 (19%), Positives = 155/346 (44%), Gaps = 15/346 (4%)

Query: 127  DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIE---GDLKLTQEAVA 183
            + L + E    +L ++ K L+ E   L+  +E+L   +E+ +R++E    +L   +E + 
Sbjct: 674  EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELE 733

Query: 184  DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
             L+   +ELE+ ++  ++E+  L  +LE+ +  +   ++ + +L+  IEELEE+ +A ++
Sbjct: 734  QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793

Query: 244  SRAKAEKQRADLARELEELGERL---EEAGGATSAQIELNKKREAEMSKLRRDLEEANIQ 300
               + E++  +  R L+ L   L   E+       +IE  ++   E+ +   +LEE    
Sbjct: 794  ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE--- 850

Query: 301  HESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAA 360
                L    ++  + + E+  + ++L     + E E+     E     +   +L  E   
Sbjct: 851  -LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909

Query: 361  TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI 420
              +  ++L+ +L  ++ +L E    L +      +  +E     R++E  E ++  L  +
Sbjct: 910  LRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE-----REIERLEEEIEALGPV 964

Query: 421  KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
             +    + E+ +   +E   +R  L      L   I+ + ++  E 
Sbjct: 965  NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 61.2 bits (149), Expect = 9e-10
 Identities = 66/325 (20%), Positives = 149/325 (45%), Gaps = 42/325 (12%)

Query: 127  DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEG---DLKLTQEAVA 183
              L++ E+  ++L Q+     ++ G ++K+IE LE + EK K ++E    DL   ++ + 
Sbjct: 695  SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754

Query: 184  DLERNKKELEQTIQRKDKEIASLTAKLED------------EQGLVGKNQKQIKELQARI 231
            +++   KELE  I+  ++++  L   L D             Q  + K ++++  ++AR+
Sbjct: 755  NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814

Query: 232  EELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLR 291
             E+E+++      +   EK+  +L  +  +L E+++        +IE    ++ E+ +  
Sbjct: 815  REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELEEEL 870

Query: 292  RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351
             +LE A    ES L +L+K+ ++  +++ E   ++ +L+ + E +R           A  
Sbjct: 871  EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930

Query: 352  DQLAR---------EKAATEKIAKQLQHQLNEVQGKL--------------DETNRSLND 388
            ++L+          E    E   + +Q +L  V+ ++              +E  + L++
Sbjct: 931  EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE 990

Query: 389  FDAAKKKLSIENSDLLRQLEEAESQ 413
                + KL  E   +L ++EE E +
Sbjct: 991  LKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 75/359 (20%), Positives = 157/359 (43%), Gaps = 8/359 (2%)

Query: 25   NRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGW 84
             RS        K+L  E ++L  QLE+ E ++  L     SL   LE+ +R  +E     
Sbjct: 659  KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 85   VEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKK 144
             E   + +     L+ L   +     E           Q+ ++ L++E ++  +   + K
Sbjct: 719  EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 145  KLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIA 204
            +  +E    ++ +++   ++E++  + E  L   +  +  LE+ ++ LEQ I+  ++EI 
Sbjct: 779  EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 205  SLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGE 264
             L  KL++ +  + + +K+++EL+  +EELE E E       + E+++ +L  EL EL  
Sbjct: 839  ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 265  RLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTL-ANLRKKHNDAVSEMGEQI 323
             L E         E  ++ EA++ +L  +L E   + E      L  +    +  + E+I
Sbjct: 899  ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958

Query: 324  DQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDET 382
            + L  +  +A  E               ++L  ++   E+  ++L   + E+  +  E 
Sbjct: 959  EALGPVNLRAIEEYEEVEER-------YEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 8/272 (2%)

Query: 282 KREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAH 341
           +R+AE ++  ++L+    + E  L  LR +      E+ E++++L +   +AE E     
Sbjct: 206 ERQAEKAERYKELKAELRELELALLVLRLE------ELREELEELQEELKEAEEELEELT 259

Query: 342 NETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENS 401
            E        ++L  E +  E+  ++LQ +L  +  ++    +           L  +  
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319

Query: 402 DLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461
           +L  QLEE ES++ +L++    L  +LE+ K   +    E   L  +   LE  ++ + E
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379

Query: 462 QLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDA 521
           QLE      A L+ Q++  N + +    + E     R    +E +   +++++  AEL  
Sbjct: 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKE 437

Query: 522 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553
            Q E      EL  L+   E  +E LE +R E
Sbjct: 438 LQAELEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 72/352 (20%), Positives = 157/352 (44%), Gaps = 12/352 (3%)

Query: 144  KKLEQENGGLKKDIEDLE---GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD 200
            ++LE++   L++ I +LE    ++ K+  ++E +L+  ++ + +L R    L + + R +
Sbjct: 680  EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 201  KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELE 260
             E+  L  ++      + + + +I+EL+ R+EE EEE+        + E Q   L  EL+
Sbjct: 740  AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 261  ELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG 320
             L E L+E     +   E        +  L R +     + E  L    ++ ++ +  + 
Sbjct: 800  ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLA 858

Query: 321  EQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLD 380
             +I++L +L  + E E  A  NE  +   A   L  E     +  ++L+ + +E++ +L+
Sbjct: 859  AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918

Query: 381  ETNRSLNDFDAAKKKLSIENSDLLRQL--------EEAESQVSQLSKIKISLTTQLEDTK 432
            E    L   +   + L +   +L  +L        EEAE+  +++   +     +L+  +
Sbjct: 919  ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978

Query: 433  RLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADA 484
                E G      + ++  L+   D +  Q E+  E K  L+  + + + +A
Sbjct: 979  NKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREA 1030

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 7e-09
 Identities = 78/340 (22%), Positives = 153/340 (45%), Gaps = 14/340 (4%)

Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQ--RKDKEIA----SLTAKLEDEQGLVG 218
           +++K + E  L+ T+E +  LE   +ELE+ ++   +  E A     L A+L + +  + 
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230

Query: 219 -----KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGAT 273
                + +K+++EL+  +  LEEE+E  ++   +AEK+  +L  ELEEL E LEE     
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 274 SAQIELNKKREAEMSKLRR---DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK 330
               E  ++ E E+S LR    +LE    + E  L  L++K      E+ E+   L +L+
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFD 390
                   A         A  ++L     A  +   +L+ +L E++ +L+E  R +   +
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 391 AAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFR 450
              ++LS    DL  +L+E E+++ +L      L  +LE+ +   +E       L  +  
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTK 490
            L+ ++  + ++L         L+ +   +     +    
Sbjct: 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEAL 510

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.2 bits (141), Expect = 8e-09
 Identities = 53/248 (21%), Positives = 105/248 (42%), Gaps = 6/248 (2%)

Query: 123 QDTVDRLQQEEDARNQLFQQKKKL-EQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEA 181
            +   RL++ E    +L ++ K L E+E   +K+ I +LE ++   +R I       +  
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA----EKERE 316

Query: 182 VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241
           + D E    +LE  I +   EI  L  ++E+E+    K  ++  EL+  +E+L  E+E  
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376

Query: 242 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 301
            +  A+   +  D   +LE+L   + E         E  ++   E++ L   +     + 
Sbjct: 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436

Query: 302 ESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAAT 361
            + L   ++     + +   +++QL    +K E E      E +       +L RE A  
Sbjct: 437 -NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495

Query: 362 EKIAKQLQ 369
           E  A+  +
Sbjct: 496 EAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 75/339 (22%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 144 KKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEI 203
           +KLE+    L + +ED+  ++E+Q + +E   +  +    +L+   +ELE  +     E 
Sbjct: 179 RKLERTRENLDR-LEDILNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRLE- 235

Query: 204 ASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELG 263
             L  +LE+ Q  + + +++++EL A ++ELEE++E  R   ++ E++  +L +EL  L 
Sbjct: 236 -ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 264 ERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 323
             +         Q ++ ++R A + +   +LE    + ES L  L ++    ++E+ E++
Sbjct: 295 NEISRL----EQQKQILRERLANLERQLEELEAQLEELESKLDELAEE----LAELEEKL 346

Query: 324 DQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETN 383
           ++L +     E E      E     +  ++L  +         QL+ Q+  +  +++   
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 384 RSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443
             L   +  +++L  E  +LL++LEEAE                L++ +   +E   E  
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAE----------------LKELQAELEELEEELE 450

Query: 444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA 482
            L  +   LE  ++ +RE+LEE  +     +R+L++  A
Sbjct: 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 70/306 (22%), Positives = 140/306 (45%), Gaps = 3/306 (0%)

Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
            T + L + ED  N+L +Q K LE++    ++  E      E +   +   L+  +E + 
Sbjct: 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE 242

Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
           +L+   KE E+ ++    E+  L  KLE+ +  V + +++I+ELQ  +  L  E+    Q
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 244 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
            +    ++ A+L R+LEEL  +LEE         E   + E ++ +L+ +LE    + E 
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE- 361

Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
            L    ++    + E+ EQ++ L     + E +  + +NE     A  ++L   +   ++
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423
             ++L  +L E +  L E    L + +   ++L  E   L   LEE   ++ +  +   +
Sbjct: 422 EIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479

Query: 424 LTTQLE 429
              +L 
Sbjct: 480 AERELA 485

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 68/339 (20%), Positives = 145/339 (42%), Gaps = 13/339 (3%)

Query: 224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
           + + + R EE E ++E   ++  + E    +L ++LE+L  + E+A      Q    + R
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA---ERYQELKAELR 223

Query: 284 EAEMSKLRRDLEEANIQHESTLANLR------KKHNDAVSEMGEQIDQLNKLKTKAEHER 337
           E E++ L   L+E   + E     L       ++  + + E  ++I++L     +   E 
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283

Query: 338 NAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLS 397
                E    +   ++L  E +   +  ++L+++L E++ +L+E    +       ++  
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE 343

Query: 398 IENSDLLRQLEEAESQVSQ----LSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLE 453
               +L + L E E    +    LS +   L    E  +    E   E A +  +   L+
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Query: 454 HDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVD 513
            +I+++ E+LE  +E   DL+ +L +  A+ +  +T+ E       E  E+ +    R+ 
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Query: 514 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 552
           +L  EL   Q+E +    EL  L+   +  + +  A + 
Sbjct: 464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 58/270 (21%), Positives = 121/270 (44%), Gaps = 18/270 (6%)

Query: 4   EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
           E  A+  + +L  +  KL E  + L + +    +L  E  +L  +LEEAE ++ +L    
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276

Query: 64  ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
             L  +LE+ +               +       ++ L+ ++           +     +
Sbjct: 277 EELREELEELQ--------------EELLELKEEIEELEGEISLLRERLEELENELEELE 322

Query: 124 DTVDRLQQEEDARNQLF----QQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQ 179
           + ++ L+++ +A  +         ++LEQ    L++  E+LE  +     ++E   +  +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 180 EAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE 239
           E +A+LE    E+   ++   +EI SL  +LE     +   ++++KEL+A +EEL+ E+E
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE 442

Query: 240 AERQSRAKAEKQRADLARELEELGERLEEA 269
              +   + E+Q  +L   L+EL   L E 
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAEL 472

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 70/332 (21%), Positives = 138/332 (41%), Gaps = 25/332 (7%)

Query: 223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK 282
           +++ L+ R+E L+ E+ + +    + E +  +L++EL +   ++ E       +IE  ++
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQ 730

Query: 283 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTK-AEHERNAAH 341
            E ++ +   +LEE     E  + N++ +  +  + + E  + L+KL+    + E   +H
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 342 NETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENS 401
           +     +A   +L  E +  E                L E  + LN     K+ L  E  
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEAR--------------LREIEQKLNRLTLEKEYLEKEIQ 836

Query: 402 DLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE 461
           +L  Q  + + Q+  + K   +L  + E+ +   +E       L  +  +L+ + D +  
Sbjct: 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896

Query: 462 QLEEEAEGKADLQRQLSKANADAQLWRTKYE------SEGVARAEELEESKSEERRVDDL 515
           QL E      +L+ Q+ K        + K E      SE      E EE   EE  ++D+
Sbjct: 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 516 AAELDASQKECRNYSTELFRLKGAYEEAQEQL 547
            AEL   ++E R            YEE  ++L
Sbjct: 957 QAELQRVEEEIRALEPVNMLAIQEYEEVLKRL 988

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 114/528 (21%), Positives = 218/528 (41%), Gaps = 52/528 (9%)

Query: 31  FDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTK 90
            +  KKKL+ + S+L    E A ++   L K K  L ++LED  ++  E ++    EL K
Sbjct: 319 LEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDL-QIELERANAAASELEK 377

Query: 91  GSIEA---ITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLE 147
                   +      +D L    + +   + +L ++    + + EE     L  Q + L 
Sbjct: 378 KQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEE-----LKDQVEALR 432

Query: 148 QENGGLKKDIEDLEG----------DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQ 197
           +EN  L+ +I DL            ++EK +R++E +    Q A+ + E   +  E  + 
Sbjct: 433 RENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVL 492

Query: 198 RKDKEIASLTAKLEDEQGLVGKNQK---QIKELQARIEELEEEVEAERQSRAKAEKQRAD 254
           R   E++ +  + E E+ L  K ++     K  Q  IE L+  +EAE + +A+A + +  
Sbjct: 493 RAQVELSQI--RSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKK 550

Query: 255 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL------ 308
           L  ++ EL   L+ A  A +   +  KK + ++ +L+  +EE     E     L      
Sbjct: 551 LEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERR 610

Query: 309 RKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQL 368
                  + E+   ++Q  + + +AE E   A    N   A    L  +K   E     L
Sbjct: 611 ATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAAL 670

Query: 369 QHQLNEVQGKL----DETNRSLND-----------------FDAAKKKLSIENSDLLRQL 407
           Q  L+E   +L    +   ++  D                  +  +K+L  +  +L  +L
Sbjct: 671 QSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQVKELQVRL 730

Query: 408 EEAESQVSQLSKIKIS-LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE 466
           +EAE+   +  K  I  L  ++ + +   D E R  A      R +E  +  ++ Q+EE+
Sbjct: 731 DEAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKELQFQVEED 790

Query: 467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDD 514
            +    LQ  + K  A  + ++ + E         L + +  +R ++D
Sbjct: 791 KKNLERLQDLVDKLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELED 838

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 53/256 (20%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEG---DLKLTQ 179
           ++    +++ +    +L ++ ++L++E   LK++IE+LEG++   + ++E    +L+  +
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322

Query: 180 EAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQ----IKELQARIEELE 235
           E + +L+   + L++ ++ ++  +  L   L + +    + +++    ++EL+   E L 
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 236 EEVEAERQSRAKAEKQRADLARELEEL---GERLEEAGGATSAQIELNKKREAEMSKLRR 292
           EE+       A+   +  +L RE+E L    ERL E       ++   K+ EAE+ +L+ 
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL---KELEAELEELQT 439

Query: 293 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAAD 352
           +LEE N + E     L +   D + E+  ++ +L +   + E E ++     +   A   
Sbjct: 440 ELEELNEELEELEEQLEELR-DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Query: 353 QLAREKAATEKIAKQL 368
                +A  E +   L
Sbjct: 499 ASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 59/279 (21%), Positives = 121/279 (43%), Gaps = 25/279 (8%)

Query: 279 LNKKRE-AEMSKLRRDLEEANIQHESTLANLRKKH---NDAVSEMGEQIDQLNKLKTKAE 334
           L ++RE  E+ +   +LEE   + E  LA LRK+     + + ++ +++++L++  +   
Sbjct: 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732

Query: 335 HERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKK 394
            +      E         QL++E    E   ++L+ +L E + +L E    + + +A  +
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEH 454
           +L  E   L   L+E  ++++ L++   +L  +LE  +R      R    L  +   L  
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 455 DIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDD 514
           DI+++  ++EE  E   +L+ +L                        L E  S E  +  
Sbjct: 853 DIESLAAEIEELEELIEELESEL---------------------EALLNERASLEEALAL 891

Query: 515 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553
           L +EL+   +E R   ++   L+   EE +E+L  +   
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 84/419 (20%), Positives = 174/419 (41%), Gaps = 16/419 (3%)

Query: 146 LEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIAS 205
           LE E   L ++IE  E   E+ +   + +     E   +     + LE  I+   + IA 
Sbjct: 211 LESELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAE 269

Query: 206 LTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGER 265
              + E+    V   +++++EL+   ++L  E   +       E +R +L    EEL +R
Sbjct: 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR 329

Query: 266 LEE---AGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQ 322
           LEE   A  A + + E  ++   ++ +   +L E   + ES L   R    +AV +  E+
Sbjct: 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR----EAVEDRREE 385

Query: 323 IDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDET 382
           I++L +   +       A  +  N     ++L  E+    +   +L+  L   + +++E 
Sbjct: 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445

Query: 383 NRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRER 442
              L      +    +E S  +  +EE   +V +L      L  ++E+ +    E   + 
Sbjct: 446 EALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDL 504

Query: 443 ATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEEL 502
                +   LE   +++ E + E  E   + + +  +    A     + E+E   + E  
Sbjct: 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA----ELEAEAEEKREAA 560

Query: 503 EESKSEERRVDDLAAELDASQKECRNYSTELFRLK---GAYEEAQEQLEAVRRENKNLA 558
            E++ E     +  AEL++   E +     L R++    A  +A++++E +R + + LA
Sbjct: 561 AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALA 619

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 355 AREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQV 414
            R   A ++  K+L+ +L E++ +L++    L       + L     +L RQLEE E Q+
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQ 474
            +L +   +L  +LE  +   +E   E   L  +   L+  ++ + E+LE   E  A L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 475 RQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELF 534
            ++ +     Q       +      E  EE +  ERR+D L  EL++ ++       E+ 
Sbjct: 779 EEIEELEEKRQ-------ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 535 RLKGAYEEAQEQLEAVRRENKNL 557
            L+   EE +E+L+ +  E + L
Sbjct: 832 ELEEEIEELEEKLDELEEELEEL 854

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 83/433 (19%), Positives = 178/433 (41%), Gaps = 5/433 (1%)

Query: 127 DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLE 186
           + L++E +   +  +  + L +E   L + ++ LE  +EK + K+E      +E   +  
Sbjct: 294 EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353

Query: 187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
              K LE+ ++  ++ +  L  +LE     + + ++ I+EL+  + EL   +E  ++   
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE 413

Query: 247 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 306
           + EK+  +L RELEEL E +++       QI   + +E  +++L    E+  +  +    
Sbjct: 414 ELEKELEELERELEELEEEIKKL----EEQINQLESKELMIAELAGAGEKCPVCGQELPE 469

Query: 307 NLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAK 366
              K+  +      E++++    + +    R          R   ++L       E + +
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKE 529

Query: 367 QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIEN-SDLLRQLEEAESQVSQLSKIKISLT 425
           +L+ +L +++  L+E           + K  +    D L++L+E   ++  L   K  L 
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELE 589

Query: 426 TQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQ 485
              E  K L  +       L      L+    +  E   EEAE + + + +     A+ +
Sbjct: 590 ELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELE 649

Query: 486 LWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE 545
                   E   + EELE     E +  +   +L+   +E      EL +L+   EE  +
Sbjct: 650 ELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLK 709

Query: 546 QLEAVRRENKNLA 558
           +L  + +  + L 
Sbjct: 710 KLGEIEQLIEELE 722

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 101/467 (21%), Positives = 196/467 (41%), Gaps = 71/467 (15%)

Query: 153 LKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQT---IQRKDKEIASLTAK 209
           L K+ E    +V ++  +I  +L   +E +  LE+  KELE+    I+  +KE+ SL   
Sbjct: 194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253

Query: 210 LEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA---------DLARELE 260
               +  + + +++I+EL+  IEELEE+V+  ++ + KAE+            D  RE+E
Sbjct: 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313

Query: 261 ELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG 320
           +   RLEE       +I+  +++E  + +L++ L+E     E  L  L ++H +   E  
Sbjct: 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL----EKRLEELEERH-ELYEEAK 368

Query: 321 EQIDQLNKLKT--------KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQL 372
            + ++L +LK         K E E                ++       +K  K+L+  +
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428

Query: 373 NEVQ---GKLDETNRSLNDFDAA--KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQ 427
            E++   GK     R L +       ++ + E   + ++L+E E +  +L K    L   
Sbjct: 429 EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488

Query: 428 LEDTKRL------------------------ADEEGRERATLLGKFRNLEHDIDNIREQL 463
           L+    L                         +++  E   L  K   L+ +I +++++L
Sbjct: 489 LKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548

Query: 464 EEEAE---GKADLQRQLSKANADAQLWRTKYESEGVARAEELEES--------------K 506
           E+  E     A+L+++L +   +      + E  G    EELEE               K
Sbjct: 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK 608

Query: 507 SEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553
             E+ ++    EL   ++E      EL   +   EE +++LE + ++
Sbjct: 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 98/569 (17%), Positives = 228/569 (40%), Gaps = 26/569 (4%)

Query: 4   EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
            ++++ L+   + ++   +E        +  +++   E    +  LEE  +++ +  +  
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251

Query: 64  ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
             L  +L + + L  E      EEL +       L+     +     E           +
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311

Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
             ++ L++  +    L ++ +KLE++   L+ ++E+L  +  +  + +E  LK  +E + 
Sbjct: 312 ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLE 371

Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
           +LE+  ++  + +++ ++ I  L  +L +    + + Q++++EL+  +EELE E+E   +
Sbjct: 372 ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEE 431

Query: 244 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
              K E+Q   L    E     + E  GA        ++   E  K   +L E  ++   
Sbjct: 432 EIKKLEEQINQL----ESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
              +  K+  +   E+ E   +L +L+ +                   ++L       E+
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547

Query: 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENS------DLLRQLEEAESQVSQL 417
           + ++LQ  L +++ +L +    L +     ++L +  +      +L  +L+E + ++ +L
Sbjct: 548 LKEKLQ--LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKEL 605

Query: 418 SKIKISLTTQLE----DTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADL 473
            +    L   L+           EE  E      +  NL+ +++ + +   EE E K + 
Sbjct: 606 EERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEE 665

Query: 474 QRQLSKANADAQLWRTKYESEGV----------ARAEELEESKSEERRVDDLAAELDASQ 523
                +          + E +               EELEE   +   ++ L  EL++ +
Sbjct: 666 LEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRK 725

Query: 524 KECRNYSTELFRLKGAYEEAQEQLEAVRR 552
            E      EL +L+ A E  +E  E + +
Sbjct: 726 AELEELKKELEKLEKALELLEELREKLGK 754

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 76/430 (17%), Positives = 178/430 (41%), Gaps = 16/430 (3%)

Query: 130  QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
            + EE  +    ++K +  ++    KK  E+ +   +  K+K E   K  + A A+ E   
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

Query: 190  KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
             E E   ++ +          +       K +++ K  +A+ +  E++ +A+   +A A 
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416

Query: 250  KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 309
            K++AD      E  ++ EE   A  A+ +  + ++A+  + ++  EEA    E+      
Sbjct: 1417 KKKAD------EAKKKAEEKKKADEAKKKAEEAKKAD--EAKKKAEEAKKAEEAKKKAEE 1468

Query: 310  KKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQ 369
             K  D   +  E+  + ++ K KAE  +  A        A       +KA   K A + +
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528

Query: 370  HQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ-------VSQLSKIKI 422
                  +    +        D  KK   ++ ++  ++ EEA+         + +  + K 
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588

Query: 423  SLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA 482
            +   ++E+  +L +EE + +A    K    +   + +++  EEE +    L+++ ++   
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKK 1647

Query: 483  DAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEE 542
             A+  +   E   +  AEE ++++ ++++ ++     +  +K       E    K A E 
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707

Query: 543  AQEQLEAVRR 552
             +++ E  ++
Sbjct: 1708 KKKEAEEKKK 1717

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 5e-05
 Identities = 102/453 (22%), Positives = 190/453 (41%), Gaps = 34/453 (7%)

Query: 130  QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGD---VEKQKRKIEGDLKLTQEAVADLE 186
            ++ E+A+      K + E      +   E  E      E+ K+K +   K  +E     E
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395

Query: 187  RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL----EEEVEAER 242
              KK  E   +  + + A+   K  DE     + +K+  E + + EE     E + +AE 
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455

Query: 243  QSRAKAEKQRADLARELEELGERLEEAGGATSA--QIELNKKREAEMSKLR--------- 291
              +A+  K++A+ A++ +E  ++ EEA  A  A  + E  KK+  E  K           
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515

Query: 292  RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAA 351
            +  EEA    E+  A   KK ++A  +  E+  + ++LK KAE  + A   +       A
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEA--KKAEEKKKADELK-KAEELKKAEEKKKAEEAKKA 1572

Query: 352  DQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAE 411
            ++         + AK+ +    E   KL E  + +   +A K + +   ++ L++ EE +
Sbjct: 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632

Query: 412  SQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKA 471
             +V QL K +     + E+ K+  +E   + A    K    +   +  ++  E+E +   
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692

Query: 472  DLQRQLSKANADAQLWRTKYESEGVARAEEL-----------EESKSEERRVDDLAAELD 520
             L+++  +A    +L   K E+E   +AEEL           EE+K E       A E  
Sbjct: 1693 ALKKEAEEAKKAEEL--KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

Query: 521  ASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553
              ++E +  +      +   EE +++ EAV  E
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 7/261 (2%)

Query: 304 TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
            L     +    + ++ E++  L       E        +        ++L RE AA E+
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIEN-------SDLLRQLEEAESQVSQ 416
             +QLQ +L E++ +L+E    L +     ++L  E        + L  ++EE E +   
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 417 LSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQ 476
           L +    L  +LE+ +R  D   RE  +L  +   LE +I+ + E++EE  E   +L+ +
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Query: 477 LSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRL 536
           L +   + +  + + E     + E  +E K  E   ++L  EL   + E      E+ +L
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 537 KGAYEEAQEQLEAVRRENKNL 557
           +   EE + +LE +  E   L
Sbjct: 911 RERLEELEAKLERLEVELPEL 931

Length = 1163

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEE 233
            L+  Q  +++L++   EL++ ++  ++ IA L ++LED +  +   ++ +K L+ R+E 
Sbjct: 73  KLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLES 132

Query: 234 LEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 290
           LEE ++       +  + R DL  E+EEL E LE          E  ++ ++ + +L
Sbjct: 133 LEESIKE---LAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 43/231 (18%), Positives = 101/231 (43%), Gaps = 8/231 (3%)

Query: 329 LKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLND 388
           LK K E+E      E        + + R+ A+ E+  ++L  +++E++ +L+E  + L +
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276

Query: 389 FDAAKKKLSIENSDLLR-QLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLG 447
            +   K L  E    ++ ++ E E++++ L +        + + +R  ++     A L  
Sbjct: 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLER-------SIAEKERELEDAEERLAKLEA 329

Query: 448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKS 507
           +   L  +I+ +  ++EEE + +  L  + ++   + +  R + E      AE  +E K 
Sbjct: 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389

Query: 508 EERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558
              +++ L  E++  ++E      EL RL     +    +  +  +   L 
Sbjct: 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 3/196 (1%)

Query: 362 EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 421
           E  A+  + +L  +  KL E  + L + +    +L  E  +L  +LEEAE ++ +L    
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276

Query: 422 ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKAN 481
             L  +LE+ +    E   E   L G+   L   ++ +  +LEE  E   +L+ ++    
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 482 ADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYE 541
            + +   T  E      AE  E  +  E ++  L  EL+   +  R    EL  L+    
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE---ELAELEAELA 393

Query: 542 EAQEQLEAVRRENKNL 557
           E + +LE ++RE ++L
Sbjct: 394 EIRNELEELKREIESL 409

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 39/303 (12%)

Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAV 182
           +    + +  E     L ++ +KL +E   L+K +E++E  +E+  +KI+    L +E  
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK---DLGEEEQ 289

Query: 183 ADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER 242
             ++    ELE  I   ++ IA    +LED +  + K + +I +L A IEELE E+E ER
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 243 QSRAK-------AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 295
           + R K        +++  DL  ELEE+ +   E                 E+   R  LE
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAET--------------RDELKDYREKLE 395

Query: 296 EANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA 355
           +   +       L               D+L +   +   E    +       A  ++L 
Sbjct: 396 KLKREINELKREL---------------DRLQEELQRLSEELADLNAAIAGIEAKINELE 440

Query: 356 REKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVS 415
            EK       K+ + +L ++   L +  + L D      ++  E S L R+L EAE+Q  
Sbjct: 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

Query: 416 QLS 418
              
Sbjct: 501 ASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 88/405 (21%), Positives = 162/405 (40%), Gaps = 19/405 (4%)

Query: 157 IEDLEGDVEKQKRKIEGDLKLTQEAVADLER---NKKELEQTIQRKDKEIASLTAKLEDE 213
            E+LE   E+ + ++E      Q    + E    +  +LE+  +   +E A L ++LE+ 
Sbjct: 316 REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375

Query: 214 QGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGAT 273
           +  V   +++I+EL+  IEEL E           AE    +L  E +EL ER  E     
Sbjct: 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE----L 431

Query: 274 SAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKA 333
            A +   ++R  E       L EA    E         H + + E  E++++L       
Sbjct: 432 EATLRTARERVEE----AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDL 487

Query: 334 EHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAK 393
           E E               +   R +   E+  + L+  + E +  ++E      +     
Sbjct: 488 EEEVEEVEERLERAEDLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERA 546

Query: 394 KKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLE 453
            +L  E  +      EAE +  +  +    L ++L + K   +   R R TLL    + E
Sbjct: 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-TLLAAIADAE 605

Query: 454 HDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVD 513
            +I+ +RE+ E  AE   + + +L++          K E E       +EE++ ++ R +
Sbjct: 606 DEIERLREKREALAELNDERRERLAEKR------ERKRELEAEFDEARIEEAREDKERAE 659

Query: 514 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558
           +   +++    E R    +L    GA E   E+LE +R   + L 
Sbjct: 660 EYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALE 704

Length = 880

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 132 EEDARNQLFQQKKKLEQENGGLKKDIEDLEG--DVEKQKRKIEGDLKLTQEAVADLERNK 189
           EE+A+  L + KK+ E     +KK+   LE   ++ K + + E +L+  +  +  LE+  
Sbjct: 37  EEEAKRILEEAKKEAEA----IKKEAL-LEAKEEIHKLRNEFEKELRERRNELQKLEKRL 91

Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEA--ERQSRAK 247
            + E+ + RK + +     +LE ++  + + Q+++++ +  +EEL EE     ER S   
Sbjct: 92  LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151

Query: 248 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 287
           AE+ +  L   LE++ E           +IE   K EA+ 
Sbjct: 152 AEEAKEIL---LEKVEEEARHEAAVLIKEIEEEAKEEADK 188

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 42/214 (19%), Positives = 92/214 (42%)

Query: 337 RNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKL 396
               ++     R   ++L  +    E+   +L+  L E++ +L+E    L       ++L
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI 456
           S + S L + L   E++V QL +    L+ +L + +   +E          +    E +I
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

Query: 457 DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLA 516
           + +  Q+E+  E    L+  L +  A+  L   +  +             + ERR++DL 
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844

Query: 517 AELDASQKECRNYSTELFRLKGAYEEAQEQLEAV 550
            +++   ++  + + E+  L+   EE + +LEA+
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEAL 878

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 37/210 (17%), Positives = 87/210 (41%)

Query: 349 AAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLE 408
               +L +  A   K  ++L+ +L +++ +L+E +R ++       +L  E   L  ++ 
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

Query: 409 EAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAE 468
           +   ++++L      L  +LE+ +    E   E   L  +   L+ ++  +RE L+E   
Sbjct: 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810

Query: 469 GKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRN 528
               L  + +      +    +  +      +  E+ +     ++ LAAE++  ++    
Sbjct: 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870

Query: 529 YSTELFRLKGAYEEAQEQLEAVRRENKNLA 558
             +EL  L       +E L  +R E + L+
Sbjct: 871 LESELEALLNERASLEEALALLRSELEELS 900

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 50/248 (20%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 310 KKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQ 369
           ++  + + E+ E+I +L K   +   E      E    R   ++L+R+ +A  K   +L+
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 370 HQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLE 429
            ++ +++ ++ + ++ L + +A  ++L     +   +L EAE+++ +L      L  +L+
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 430 DTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRT 489
             +   DE   E   L  +  NL   ++++  ++        DL+ Q+ + + D +    
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE---- 855

Query: 490 KYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 549
                  + A E+EE    E  +++L +EL+A   E  +    L  L+   EE  E+L  
Sbjct: 856 -------SLAAEIEE---LEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

Query: 550 VRRENKNL 557
           +  +   L
Sbjct: 906 LESKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 68/352 (19%), Positives = 147/352 (41%), Gaps = 26/352 (7%)

Query: 203 IASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL 262
           +A    K E     + + ++ I+ L   I+E  +++E  R+ R KAE+ +A L  + E  
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE 224

Query: 263 GERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQ 322
           G  L +   A   Q E     E +++ L  +LE+        L     +    + E+ + 
Sbjct: 225 GYELLKEKEALERQKE---AIERQLASLEEELEK--------LTEEISELEKRLEEIEQL 273

Query: 323 IDQLN-KLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE 381
           +++LN K+K   E E+     +     A    L R  A  E+  +  + +L +++ ++D+
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333

Query: 382 TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRE 441
               + + +              R++EE   +  +L++    L  +LED +   +E  +E
Sbjct: 334 LLAEIEELE--------------REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379

Query: 442 RATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEE 501
            A    + ++    ++ ++ ++ E       LQ +L + + +                E 
Sbjct: 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439

Query: 502 LEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE 553
            EE + +   +     +L+    +   Y  EL+ LK  Y+  +++L  ++RE
Sbjct: 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 87/412 (21%), Positives = 188/412 (45%), Gaps = 28/412 (6%)

Query: 164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQ 223
           ++++  ++E  +K T+     ++  +KELE+ + R+  EI+S   +L +E   + K  K+
Sbjct: 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVL-REINEISSELPELREELEKLEKEVKE 232

Query: 224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
           ++EL+  IEELE+E+E+   S+ K E++  +L   +EEL + +EE         EL +K 
Sbjct: 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292

Query: 284 EA--EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAH 341
           E   ++S+   +  +   + E  L+ L ++    ++ + E+I +L + + + E  +    
Sbjct: 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEE----INGIEERIKELEEKEERLEELK---- 344

Query: 342 NETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL-----DETNRSLNDFDAAKKKL 396
            +        ++L  E+    + AK  + +L  ++ +L     ++  + L + + AK+++
Sbjct: 345 KKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403

Query: 397 SIENSDLLRQLEEAESQVSQLSKIKISLTT---QLEDTKRLADEEGRER--ATLLGKFRN 451
             E S +  ++ E + ++ +L K    L     +     R   EE R+        + + 
Sbjct: 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKR 463

Query: 452 LEHDIDNIREQLEE------EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEES 505
           +E ++  I E+  +      E E     + +L K    A+  +   E       EELE+ 
Sbjct: 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523

Query: 506 KSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
             E  ++ +   +L    K  +    +L  LK    E +++L+ +  E   L
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 332 KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
           +   E      E +      ++L  E    EK  ++L+ +L E++ +L+E    L +   
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 392 AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRN 451
             ++L  E S L  +LEE E+++ +L +    L  ++E  K    EE  ER TLL +   
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK----EELEERETLLEELEQ 351

Query: 452 LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERR 511
           L  +++  +E+LEE+     +   +L +A       R +        AE   E +  +R 
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEA------LREELAELEAELAEIRNELEELKRE 405

Query: 512 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
           ++ L   L+   +   +   EL  L+   EE Q +LE +  E + L
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 26/273 (9%)

Query: 8   KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 67
           K+L+ +L E++  L      +   +  +++L     +L  +L+EAE ++ +L+     L 
Sbjct: 216 KELKAELRELELAL-----LVLRLEELREELE----ELQEELKEAEEELEELTAELQELE 266

Query: 68  TQLEDTKRLADEESSGWVEELTKGSIEAITLKS---LDLDVLNFTTENSHSFSISLYSQD 124
            +LE   RL   E    +EEL K         S       +L     N       L +Q 
Sbjct: 267 EKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ- 324

Query: 125 TVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKI---EGDLKLTQEA 181
               L++ E   ++L ++  +LE++   LK+++E LE ++E+ + ++   E  L+  +E 
Sbjct: 325 ----LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380

Query: 182 VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQ-----ARIEELEE 236
           +  L     +LE  I   + EI  L A+LE  +    + Q++I+EL      A ++EL+ 
Sbjct: 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440

Query: 237 EVEAERQSRAKAEKQRADLARELEELGERLEEA 269
           E+E   +   + +++   L   LEEL E LEEA
Sbjct: 441 ELEELEEELEELQEELERLEEALEELREELEEA 473

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 44/211 (20%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQK 222
             +KQ ++I+ ++   ++ + + +  + +LE+ ++  + EIASL A+L +    + K +K
Sbjct: 35  ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94

Query: 223 QIKELQARIEELEEEVEAERQSRAK--AEKQRADLARELEELGERLEEAGGATSAQI--E 278
           QI +L AR+  LE +   +R+  A+  A  QR+        L    +       A     
Sbjct: 95  QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154

Query: 279 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERN 338
           LN  R   +  L+  L++      + +A  + +    +SE   Q  +L +L    E ++ 
Sbjct: 155 LNPARAERIDALKATLKQLAAV-RAEIAAEQAELTTLLSEQRAQQAKLAQL--LEERKKT 211

Query: 339 AAHNETNNTRAAADQLAREKAATEKIAKQLQ 369
            A   +    A   +L   +A   ++  ++ 
Sbjct: 212 LAQLNS-ELSADQKKLEELRANESRLKNEIA 241

Length = 420

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 65/339 (19%), Positives = 127/339 (37%), Gaps = 54/339 (15%)

Query: 226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 285
           EL+ R+++ EE +++    + +AE+Q      ELEE      EA  A        K+   
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTAL-------KQARL 656

Query: 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL-NKLKTKAEHERNAAHNET 344
           ++ +L+ + +    + E  +A  +++    + ++  Q+ QL  + +   E  ++      
Sbjct: 657 DLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELR 716

Query: 345 NNTRAA--------ADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKL 396
               A          +QLA+  AA E    Q + +L E++            +D     L
Sbjct: 717 TERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELK----------KQYDRELASL 766

Query: 397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKF---RNLE 453
            ++            + V +L +    L T +E       E    RA +   +    +L 
Sbjct: 767 DVD-----------PNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLR 815

Query: 454 HDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVD 513
            +  N+  QL E      +LQ++L++   D +L R K E               E + ++
Sbjct: 816 EERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLE--------------QERKALE 861

Query: 514 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 552
               +LD   +  R+   +L  LK      Q +     R
Sbjct: 862 KQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSISER 900

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG--DVEKQKRKIEGDLKLTQEAVADLER 187
           ++   A     +  ++ ++E   LKK+   LE   +V K + ++E +LK  +  +  LER
Sbjct: 25  KKLGSAEELAKRIIEEAKKEAETLKKEAL-LEAKEEVHKLRAELERELKERRNELQRLER 83

Query: 188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEA--ERQSR 245
              + E+T+ RK + +      LE ++  +   +K + E +  +EEL  E     ER S 
Sbjct: 84  RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG 143

Query: 246 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 286
              E+ +  L   LEE+ E           +IE   K EA+
Sbjct: 144 LTQEEAKEIL---LEEVEEEARHEAAKLIKEIEEEAKEEAD 181

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 56/272 (20%), Positives = 119/272 (43%), Gaps = 14/272 (5%)

Query: 7   AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISL 66
            ++L+ +L E++ ++ E    + +       L+ E S L +Q +    +++ L +    L
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 67  TTQLEDT--KRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISL---- 120
             QLE+   K     E    +EE  +   E +     +L+ L    E   S    L    
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381

Query: 121 --YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLT 178
                       Q     N++ + + +LE+     ++  +++E   E  K+  E +LK  
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE---ELLKKLEEAELKEL 438

Query: 179 QEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARI---EELE 235
           Q  + +LE   +EL++ ++R ++ +  L  +LE+ +  +   ++++ +LQAR+   E L+
Sbjct: 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLE 267
           E +E   +      K ++ L+  L  L E + 
Sbjct: 499 ENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 59/315 (18%), Positives = 120/315 (38%), Gaps = 32/315 (10%)

Query: 107 NFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEK 166
                   +  +    ++     +     RN L  Q+ + +Q    L++DI+ L     +
Sbjct: 179 ALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLT----Q 234

Query: 167 QKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKE 226
           +K++ +  L+ TQ+  A+LER K EL+Q +++        T +  DE+      Q + ++
Sbjct: 235 KKQENDRVLEGTQDIEAELERMKGELKQRLKKM-------TIQRRDEETERIDLQLENEQ 287

Query: 227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 286
           L   +  L+E +E+ +Q                  LGE L   G      I    +   E
Sbjct: 288 LHEDLRTLQERLESSQQKAGL--------------LGEELASLGSLRDHTIAELHQSRLE 333

Query: 287 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNN 346
            +++   L + N+  +   +   ++            D++ KL  +          E + 
Sbjct: 334 SAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQ 393

Query: 347 TRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQ 406
                 +L  EK          + QL+E + +L E   +L      K++L  E  +LL  
Sbjct: 394 REKLEVELGIEKDCN-------RVQLSENRRELSELRSALRVLQKEKEQLQEEKQELLDY 446

Query: 407 LEEAESQVSQLSKIK 421
           +   E ++ + +  K
Sbjct: 447 IRVLELRLDKEADEK 461

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 64/315 (20%), Positives = 143/315 (45%), Gaps = 8/315 (2%)

Query: 4   EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
           E   K  Q  +  +Q  L+   +   +    KKKL  + ++L   L+ A    ++  K  
Sbjct: 517 ENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNV 576

Query: 64  ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
                Q+++ +   +EE     +   + ++      +L+ ++    +    +      ++
Sbjct: 577 KKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAE 636

Query: 124 ----DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG---DVEKQKRKIEGDLK 176
               +  +R+ +     + L  QK+KLE E   L+ D+++        E++ +K + D  
Sbjct: 637 TELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAA 696

Query: 177 LTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED-EQGLVGKNQKQIKELQARIEELE 235
              E +   + + + LE+  ++ + ++  L  +L++ E   +   +K I++L+AR+ ELE
Sbjct: 697 RLAEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELE 756

Query: 236 EEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 295
            E++ E++  A+ +K    + R ++EL  ++EE         +L  K +A++   +R LE
Sbjct: 757 AELDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVDKLQAKIKTYKRQLE 816

Query: 296 EANIQHESTLANLRK 310
           EA    +  L+  RK
Sbjct: 817 EAEEVAQINLSKYRK 831

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 48/287 (16%), Positives = 99/287 (34%), Gaps = 24/287 (8%)

Query: 126 VDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADL 185
            +     + AR  L + + + +     L+  I + +   E Q R+++  LK   E     
Sbjct: 645 AEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAF 704

Query: 186 ERNKKE--LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
               K+   E   +R  K              L    +    + +AR++EL+++ + E  
Sbjct: 705 LEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELA 764

Query: 244 SRAKAEKQRADLARELEELGERLEEAGG-----------------ATSAQIELNKKREAE 286
           S         +L R++EEL   +E                        +  E       +
Sbjct: 765 SLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQ 824

Query: 287 MSKLRRDLEEANIQH---ESTLANLRKKHNDAVSEMGEQIDQLNKLKT--KAEHERNAAH 341
           + +L    EE   +           RKK       + +Q+DQL++L    + E  + A  
Sbjct: 825 LRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAEL 884

Query: 342 NETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLND 388
            E  N   A   ++      E+  ++ +    +++  L+  +  + D
Sbjct: 885 KEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKD 931

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 39/273 (14%), Positives = 95/273 (34%), Gaps = 26/273 (9%)

Query: 224 IKELQ----ARIEELEEEVEAERQS--RAKAEKQRADLARELEELGERLEEAGGATSAQI 277
           + EL       +E+LEE  +  ++      AE  +  L+  L E+ + L    G      
Sbjct: 22  LAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLF 81

Query: 278 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL-NKLKTKAEHE 336
            L +    ++    + LEE     E   + + +       ++ E++ +L  +L+   +  
Sbjct: 82  ILPE-EVEKLEAELKSLEEVIKPAEKFSSEVEE----LTRKLEERLSELDEELEDLEDLL 136

Query: 337 RNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDET------NRSLNDFD 390
                    +       L   K    ++    + +L  + G +++       N   +   
Sbjct: 137 EELEPLAYLDF--DLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVI 194

Query: 391 AAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFR 450
                       + + L E   ++ ++ +     +  + + + +  E   E  +L  +  
Sbjct: 195 VVAHGAED-LDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELE 253

Query: 451 NL----EHDIDNIREQLEEEAEGKADLQRQLSK 479
            L      ++  +RE LE E     D+  +L++
Sbjct: 254 ALAEKIAEELLAVREILEIEKA-LGDVLSKLAR 285

Length = 660

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 51/274 (18%), Positives = 115/274 (41%), Gaps = 26/274 (9%)

Query: 26  RSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWV 85
           +     +  K+ +  + + L  +LE+   ++S+L K    +   LE+  +         +
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK--------I 281

Query: 86  EELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKK 145
           ++L +     +  K  +L+             I+   +   ++ ++ EDA  +L     K
Sbjct: 282 KDLGEEEQLRVKEKIGELEA-----------EIASLERSIAEKERELEDAEERL----AK 326

Query: 146 LEQENGGLKKDIEDLEGDVE---KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKE 202
           LE E   L  +IE+LE ++E   K++ K+  +    +E + DL    +E+++       E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 203 IASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEEL 262
           +     KLE  +  + + ++++  LQ  ++ L EE+     + A  E +  +L  E E+ 
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 263 GERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 296
              +++             K E E+  L+ + + 
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 51/272 (18%), Positives = 119/272 (43%), Gaps = 5/272 (1%)

Query: 1   AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 60
           +  E+  ++LQ +L E + +++E    L +     ++L  E  +L  ++EE E ++S L 
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 61  -KIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSIS 119
            +++       E  +RL + +      +      E +  +   L       +      +S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 120 LYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQ 179
              ++  +  +   +   +L  +  ++  E   LK++IE LE  +E+   ++E   +  +
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 180 EAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE 239
           E  A+LE  + ELE+     ++E+  L  +LE+ +  + + ++++ ELQ  ++ LE+E+ 
Sbjct: 429 ELEAELEELQTELEE----LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELS 484

Query: 240 AERQSRAKAEKQRADLARELEELGERLEEAGG 271
           +      + E ++         L        G
Sbjct: 485 SLEARLDRLEAEQRASQGVRAVLEALESGLPG 516

Length = 1163

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 48/263 (18%), Positives = 98/263 (37%), Gaps = 32/263 (12%)

Query: 220 NQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIEL 279
           + KQ+K++Q  I  LE+++  ++  RAK EKQ   L  E+  L  +L E           
Sbjct: 36  DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIET---------- 85

Query: 280 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNA 339
                 ++ KLR+ + + N    + L  L  +         EQ  +L +          A
Sbjct: 86  ----ADDLKKLRKQIADLN----ARLNALEVQE-------REQRRRLAEQ-------LAA 123

Query: 340 AHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIE 399
                 N   A      +   + ++A            ++D    +L    A + +++ E
Sbjct: 124 LQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAE 183

Query: 400 NSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNI 459
            ++L   L E  +Q ++L+++       L         + ++   L      L+++I + 
Sbjct: 184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243

Query: 460 REQLEEEAEGKADLQRQLSKANA 482
                +  E  A  +   ++A A
Sbjct: 244 EAAAAKAREAAAAAEAAAARARA 266

Length = 420

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 56/333 (16%), Positives = 132/333 (39%), Gaps = 46/333 (13%)

Query: 124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEG---DLKLTQE 180
           D +DRL    D  N L ++KK     +  +  +IE LE ++++Q  K E    ++   + 
Sbjct: 182 DLIDRLAG--DLTNVLRRRKKSELPSS--ILSEIEALEAELKEQSEKYEDLAQEIAHLRN 237

Query: 181 AVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLV----GKNQKQIKELQAR------ 230
            + + +R+ + LE+  + +  ++     +LE +   +      N+ Q++EL A       
Sbjct: 238 ELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLL 297

Query: 231 ----IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 286
               ++  + +++ E QS+     Q     R+  EL E L +         E+  +    
Sbjct: 298 IPNLLDSTKAQLQKEEQSQQNQLTQEELEERDK-ELLESLPKLALPAEHVKEIAAELAEI 356

Query: 287 MSKLRRDLE-------EANIQHESTLANLRKKHNDAVS-------EMGEQIDQLNKLKTK 332
                 D E           Q E  +  ++++  DA S       E+ E++ +++K    
Sbjct: 357 DKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDK---- 412

Query: 333 AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDF--- 389
            +     +  +         +   E   +E   ++L  QL  ++  ++   ++L++    
Sbjct: 413 -KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471

Query: 390 --DAAKKKLSIENSDLLRQLEEAESQVSQLSKI 420
             +A + + +I  +D  ++  +   +     K+
Sbjct: 472 KINAFELERAITIADKAKKTLKEFREKLLERKL 504

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 19/109 (17%), Positives = 46/109 (42%)

Query: 192 LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQ 251
           L + I  KD  +  L +++ +   L+   ++  ++LQ  +  L   + A    R++ +  
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 252 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQ 300
            A+LA        R  E      ++ +++ +  A++  L + +     Q
Sbjct: 104 LAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152

Length = 343

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEA 181
           +QD   RL+   + R QL  Q + L+     L+     L+  V         DLKL    
Sbjct: 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL--------DLKLRSAQ 197

Query: 182 VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE 241
           +    +N        Q + +E+A   A  +     + +   QI +   +I    E++   
Sbjct: 198 IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRER 257

Query: 242 RQSRAKAEKQRADLARELEEL 262
            +   + E  +A L +E+ +L
Sbjct: 258 ERQLQRLETAQARLEQEVAQL 278

Length = 499

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 61/314 (19%), Positives = 120/314 (38%), Gaps = 54/314 (17%)

Query: 115 SFSISLYSQDTVDRLQQEEDARNQL--FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIE 172
             S +     +   L  E D + QL    ++K LE E+  +++D+E              
Sbjct: 21  CLSSAFARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQ------------- 67

Query: 173 GDLKLTQEAVADLERNKKE---LEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQA 229
                T   +  ++R K+E   L+Q + +   ++    A+LE    L   N ++ +E  +
Sbjct: 68  -----TLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA---LKDDNDEETRETLS 119

Query: 230 R--IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 287
              + +LE  +         A+   A+   +L  L  + E A  A  A    N +R   +
Sbjct: 120 TLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA----NSQR---L 172

Query: 288 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNT 347
            ++R  L+   +  ++   + R       + +  Q D   K              E N  
Sbjct: 173 QQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL------------EGNTQ 220

Query: 348 RAAADQLAREKAATEKIAKQLQHQLNEVQG-----KLDETNRSLNDFDAAKKKLSIENSD 402
                Q  R+   T +I  +L+HQL  +Q      +L  + +++ +  +  +   I+ + 
Sbjct: 221 LQDLLQKQRDY-LTARIQ-RLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANP 278

Query: 403 LLRQLEEAESQVSQ 416
           L+ Q  E   Q+SQ
Sbjct: 279 LVAQELEINLQLSQ 292

Length = 1113

>gnl|CDD|132062 TIGR03017, EpsF, chain length determinant protein EpsF

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 25/185 (13%)

Query: 130 QQEEDARNQLFQQKKKL---EQENGGLKKDIEDLEGDVEKQK-RKIEGDLKLTQEAVADL 185
           QQ    R  L + + KL   +QE G +  D E L  DVE+ +  ++   L   Q  V D 
Sbjct: 178 QQIAALREDLARAQSKLSAYQQEKGIVSSD-ERL--DVERARLNELSAQLVAAQAQVMDA 234

Query: 186 ERNKKELEQT-----------IQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
              +                 IQ    +IA   +KL +    +G N  Q K  QA I  L
Sbjct: 235 SSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSL 294

Query: 235 EEEVEAE--RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 292
           + ++ AE  + + +     R    RE  EL E LE         +ELN++R+ EMS L+R
Sbjct: 295 KSQLNAEIKKVTSSVGTNSRILKQRE-AELREALENQKAKV---LELNRQRD-EMSVLQR 349

Query: 293 DLEEA 297
           D+E A
Sbjct: 350 DVENA 354

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer. Length = 444

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 11/197 (5%)

Query: 182  VADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE---EV 238
            V DL      +++ I + D+++A L  KL++   +       +++ +AR EEL E   ++
Sbjct: 837  VIDLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKL 896

Query: 239  EAERQ--SRAKAEKQRADLARELEELGERLEEAGGATSAQIE--LNKKREAEMSKLRRDL 294
            EA R   S ++A   R D      E     +          E  + +  E  ++ +    
Sbjct: 897  EAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAA 956

Query: 295  EEANIQHESTLANLR----KKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAA 350
            ++A     S +  +     K    +V +       + K   K    + AA  +    +AA
Sbjct: 957  QQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAA 1016

Query: 351  ADQLAREKAATEKIAKQ 367
            A +   +KA  +K+A++
Sbjct: 1017 AKKKVAKKAPAKKVARK 1033

Length = 1052

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 97/422 (22%), Positives = 186/422 (44%), Gaps = 40/422 (9%)

Query: 8   KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQ--------- 58
           K LQ +++++  +L E  R++++ + A+++L  E  +L   LEEAE+ +           
Sbjct: 436 KNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQ 495

Query: 59  --LSKIKISLTTQL-------EDTKR---LADEESSGWVEELTKGSIEAITLKS-LDLDV 105
             LS+I+  +  +L       E+T++    A E     +E   KG  EA  LK  L+ D+
Sbjct: 496 VELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDI 555

Query: 106 LNFTTENSHSFSISLYSQDTVDRLQQE---------------EDARNQLFQQKKKLEQEN 150
                   H+   +  +Q  V + QQ+               EDAR QL   +++     
Sbjct: 556 NELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALE 615

Query: 151 GGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKL 210
             L++    LE   E+ +++ E +L    E V +L      L    ++ + E+A+L + L
Sbjct: 616 AELEELRSALE-QAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDL 674

Query: 211 EDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA- 269
           ++    +   +++ K+ QA    L EE+  E++     E+ R  L  +++EL  RL+EA 
Sbjct: 675 DEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAE 734

Query: 270 GGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL 329
             A     ++ +K EA + +L  +L+    +H  T  NLRK     V E+  Q+++  K 
Sbjct: 735 AAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLRKMER-RVKELQFQVEEDKKN 793

Query: 330 KTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDF 389
             + +   +    +    +   ++            ++ Q +L + + + D   RSLN  
Sbjct: 794 LERLQDLVDKLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELEDAEERADTAERSLNKL 853

Query: 390 DA 391
            A
Sbjct: 854 RA 855

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 52/284 (18%), Positives = 112/284 (39%), Gaps = 24/284 (8%)

Query: 281 KKREAEMSKLRRDLEEANIQHESTLANLRKKHN------DAVSEMGEQIDQLNKLKTKAE 334
           +   AE+ +LR  LE    +  S  + LR+  N        +S+   +I ++ K   + E
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 335 HERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKK 394
            E                 L +E    +   K+L+ ++ E++  L +   +LND +A   
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEH 454
              I       +L + E +VS++      +  +L       +   +E   L  +  +L+ 
Sbjct: 790 HSRIPEIQ--AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 455 DIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSE-ERRVD 513
            I +I +++E     K +L+ +L +  A                  +LE    + ++  D
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEA---------------ALRDLESRLGDLKKERD 892

Query: 514 DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
           +L A+L   +++      ++ + +    E + +LEA+  E   +
Sbjct: 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 78/396 (19%), Positives = 166/396 (41%), Gaps = 21/396 (5%)

Query: 127  DRLQQEEDARNQLFQQKKKLEQENGG--LKKDIEDLEGDVE-----KQKRKIEGDLKLTQ 179
            D L++   A+ +  + KKK E++      KK  E+ +   E     ++ +K E   K  +
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467

Query: 180  EAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELE-EEV 238
            EA    E  KK  E     + K+ A    K  DE     + +K+  E +   E  + +E 
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527

Query: 239  EAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 298
            +   +++   E ++A+  ++ +EL +  E        + E  KK E + +   R  EEA 
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587

Query: 299  IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREK 358
               E+ +  + K + +      E+  +  + K KAE  + A        +   +QL +++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKE 1642

Query: 359  AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLS 418
            A  +K A++L+        K +E N+     +A K +   + ++  ++ EE E + ++  
Sbjct: 1643 AEEKKKAEELK--------KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694

Query: 419  KIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLS 478
            K +     + E+ K+   EE ++   L       +   +  +++ EE+ +   + ++   
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754

Query: 479  KANADAQLWRTKYESEGVARAEELEESKSEERRVDD 514
            +    A L + + +     R E+    + E    D+
Sbjct: 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790

Length = 2084

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 166 KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIK 225
           ++   ++  LK      A++   + EL   +  +  + A L   LE+ +  + +   ++ 
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220

Query: 226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA 269
             Q ++EEL       +   A AE   A  ARE     E     
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAA-AAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 184 DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
           D+E     LE+ + + +KEI  +  KL +E G V K  +++             VE ER+
Sbjct: 808 DVEAELARLEKELAKLEKEIERVEKKLSNE-GFVAKAPEEV-------------VEKERE 853

Query: 244 SRAKAEKQRADLARELEELGE 264
             A+ E++ A L   L  L  
Sbjct: 854 KLAEYEEKLAKLKERLARLKA 874

Length = 874

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 196 IQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK---QR 252
           ++   + IA+L    E E   + +      +   R+ EL  E+ A     A  E    Q 
Sbjct: 421 LEDLRRRIAAL----ELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQE 476

Query: 253 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTL 305
            +L   +  L   LE    A +          A++++L   L  A  Q E  L
Sbjct: 477 KELVEAILALRAELEADADAPADDDAA---LRAQLAELEAALASA--QGEEPL 524

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 58/294 (19%), Positives = 113/294 (38%), Gaps = 52/294 (17%)

Query: 219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE 278
               +I+ L+A ++E  E+ E   Q  A    +  +  R LE L ++    GG    + E
Sbjct: 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEERE 265

Query: 279 LNKKREAEMSKLRRDLEEANIQH--------------ESTLANLRK----KHNDAVSEMG 320
             +++  E+   R+       +               +ST A L+K    + N    E  
Sbjct: 266 QLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEEL 325

Query: 321 EQIDQ-----LNKLKTKAEH---------ERNAAHNETNNT--RAAADQLAREKAATEKI 364
           E+ D+     L KL   AEH         E +      +    R +  +L + +   +++
Sbjct: 326 EERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQV 385

Query: 365 AK-------QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQL 417
            +       QL  +L E++ +L E ++ ++   + ++      + LL +L EA++++ + 
Sbjct: 386 KRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQI-----AQLLEELGEAQNELFRS 440

Query: 418 SKIKISLTTQLEDTKRLADE---EGRERATLLGKFRNLEHDI---DNIREQLEE 465
                 L  QLE  K   +       E+         LE  I   D  ++ L+E
Sbjct: 441 EAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKE 494

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 52/258 (20%), Positives = 117/258 (45%), Gaps = 4/258 (1%)

Query: 130 QQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNK 189
           Q+E ++  Q  ++++++  +     K+ E  +   E++ + +  + +  +  +  LER K
Sbjct: 251 QEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 310

Query: 190 KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE 249
            + E+ ++  +KE+  L  +L+ E+  + + +K++KEL+ + E  EEE E   + + K E
Sbjct: 311 VDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLE 370

Query: 250 KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 309
           +   +L  + +   ERL  A        E   + + E  K  + L E + Q E  L   +
Sbjct: 371 QLEEELLAKKKLESERLSSAA----KLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEK 426

Query: 310 KKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQ 369
           K+    V E+ E ++      T+ + E      +    +    +       T+ +    Q
Sbjct: 427 KEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQ 486

Query: 370 HQLNEVQGKLDETNRSLN 387
            +L  ++ KL+E ++  +
Sbjct: 487 LELLLLRQKLEEASQKES 504

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 151 GGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKL 210
           G  K+ + +L   +E+ +R++E   +  +  + + E+ K+ELE+  ++  +E   L  + 
Sbjct: 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571

Query: 211 EDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA 269
           E E       Q+ IKE +   +E+ +E+   ++    + K     A EL E  +RL +A
Sbjct: 572 EKEA------QQAIKEAKKEADEIIKELRQLQKGGYASVK-----AHELIEARKRLNKA 619

Length = 782

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 49/298 (16%), Positives = 107/298 (35%), Gaps = 41/298 (13%)

Query: 122 SQDTVDRLQQEEDARNQ----LFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKL 177
           SQ   D  +++    +Q      +Q  +          D+ DL                 
Sbjct: 180 SQGLEDYRKRKRQRLDQKAAEYLRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFTR 239

Query: 178 TQEAVADLERNK-------KELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQAR 230
           T++                   E   + ++ E+ +L  ++++ +  + +   +IK L ++
Sbjct: 240 TEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASK 299

Query: 231 IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 290
           I+++ EE+   RQ   + E++   + +   EL    E       A +  + +R   + +L
Sbjct: 300 IKQVNEELTTVRQENEELEEEY-KIKKRTVELLPDAENNVAKLQALVVASSER---LLEL 355

Query: 291 RRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEH------ERNAAHNET 344
            +  E           +L++K+ +   E   Q+D++ KL+ K E        +   + + 
Sbjct: 356 AQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQL 415

Query: 345 NNTRAAADQLAREKAATEKI--------------------AKQLQHQLNEVQGKLDET 382
            +    A +     A T +I                     + LQ ++N + GKLD T
Sbjct: 416 LDEYENAPKSVSRSAYTRRILEIIKNIKKQKEDIDKILSDTRSLQKEINNITGKLDRT 473

This family consists of several eukaryotic proteins of unknown function. Length = 536

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	558
KOG0161|consensus	1930		100.0
KOG0161|consensus	1930		100.0
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.97
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.96
PRK02224	880	chromosome segregation protein; Provisional	99.65
PRK02224	880	chromosome segregation protein; Provisional	99.58
KOG0977|consensus	546		99.56
PF00038	312	Filament: Intermediate filament protein; InterPro:	99.5
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.35
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.34
KOG4674|consensus	1822		99.33
KOG4674|consensus	1822		99.33
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.22
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.19
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.1
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.9
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.88
PRK03918	880	chromosome segregation protein; Provisional	98.86
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.78
KOG0612|consensus	1317		98.78
PRK04778	569	septation ring formation regulator EzrA; Provision	98.69
KOG0977|consensus	546		98.69
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.62
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.58
KOG0971|consensus	1243		98.57
KOG0996|consensus	1293		98.51
KOG0971|consensus	1243		98.48
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.42
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.41
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.32
KOG0612|consensus	1317		98.3
KOG0996|consensus	1293		98.27
KOG4643|consensus	1195		98.26
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.25
KOG4643|consensus	1195		98.13
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.02
KOG0933|consensus	1174		97.87
PRK01156	895	chromosome segregation protein; Provisional	97.86
KOG0976|consensus	1265		97.82
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.79
PRK04778	569	septation ring formation regulator EzrA; Provision	97.73
PHA02562	562	46 endonuclease subunit; Provisional	97.64
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.61
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.54
KOG0994|consensus	1758		97.52
KOG0976|consensus	1265		97.49
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.49
KOG0964|consensus	1200		97.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.35
KOG0250|consensus	1074		97.31
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.3
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.29
PRK11637	428	AmiB activator; Provisional	97.28
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.18
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.18
KOG0933|consensus	1174		97.16
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.16
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.13
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.08
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.06
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.93
PRK09039	343	hypothetical protein; Validated	96.88
KOG4673|consensus	961		96.86
KOG0018|consensus	1141		96.83
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.8
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.77
KOG0978|consensus	698		96.76
PRK09039	343	hypothetical protein; Validated	96.72
KOG1029|consensus	1118		96.72
PRK04863	1486	mukB cell division protein MukB; Provisional	96.68
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.67
KOG0250|consensus	1074		96.66
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.64
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.52
KOG0980|consensus	980		96.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.33
KOG4673|consensus	961		96.31
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.29
KOG0963|consensus	629		96.27
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.24
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.23
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.16
KOG1003|consensus	205		96.01
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.99
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.96
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.88
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.52
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.5
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.48
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.45
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	95.27
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.27
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.09
KOG0978|consensus	698		95.07
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.93
KOG0999|consensus	772		94.86
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	94.83
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.82
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.53
KOG0964|consensus	1200		94.49
KOG0946|consensus	970		94.48
PRK11281	1113	hypothetical protein; Provisional	94.36
KOG1029|consensus	1118		94.26
KOG0946|consensus	970		94.25
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.25
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.18
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.61
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.54
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.44
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.34
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.09
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.84
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.61
KOG0995|consensus	581		92.61
KOG0994|consensus	1758		92.47
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.19
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.19
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.89
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.98
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.83
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.27
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.65
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.61
KOG1899|consensus	861		89.6
COG4372	499	Uncharacterized protein conserved in bacteria with	89.56
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.32
KOG0963|consensus	629		88.93
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	88.46
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.28
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.26
COG4372	499	Uncharacterized protein conserved in bacteria with	87.86
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	87.67
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	87.46
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	87.07
KOG4593|consensus	716		86.52
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.25
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.09
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	85.81
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	85.69
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	85.22
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	84.95
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.77
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	84.24
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	83.95
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	83.85
PRK10884	206	SH3 domain-containing protein; Provisional	83.36
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.2
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	83.04
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.01
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.01
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	82.48
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.42
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	82.27
KOG0249|consensus	916		81.97
COG4477	570	EzrA Negative regulator of septation ring formatio	81.67
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.61
KOG0995|consensus	581		80.27

>KOG0161|consensus

Probab=100.00  E-value=3.5e-35  Score=331.99  Aligned_cols=529  Identities=47%  Similarity=0.650  Sum_probs=495.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhhhh
Q psy8739           6 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWV   85 (558)
Q Consensus         6 ~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~~~   85 (558)
                      ..-.++..+.++...+++.......+.....+++.++.++...+.+.+..+..+..++.....++..+...+.       
T Consensus       902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~-------  974 (1930)
T KOG0161|consen  902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN-------  974 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            4556788888899999999999999999999999999999999999999999999999998888876544222       


Q ss_pred             hhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q psy8739          86 EELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE---G  162 (558)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~---~  162 (558)
                                    .+++.+.++.++++   .++..+..+.+.+..+++++..+.+.+.+|+++++++...++...   +
T Consensus       975 --------------~~~e~~~kL~kekk---~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen  975 --------------SLDENISKLSKEKK---ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM 1037 (1930)
T ss_pred             --------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          34444555555554   357788999999999999999999999999999999999999764   8


Q ss_pred             hHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         163 DVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAER  242 (558)
Q Consensus       163 ~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~  242 (558)
                      ++++.++++++++...++.+..+...+..+...+.+.+.++..+..++++.......+++.++.|+++|.+|.++++.++
T Consensus      1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Q psy8739         243 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQ  322 (558)
Q Consensus       243 ~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~  322 (558)
                      ..+.++++.+++|..++.++..++++.++.+...++..++++.++..++..+++....++..+..+|..|...+.++..+
T Consensus      1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888899988888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHH
Q psy8739         323 IDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSD  402 (558)
Q Consensus       323 le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~  402 (558)
                      ++++.+.+..+++++..++.++.++..++..+...+.+++..++.++.++.+++..+++..+.+.++..+..++..++..
T Consensus      1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         403 LLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA  482 (558)
Q Consensus       403 l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~  482 (558)
                      +..++++.+..++.+.+....+..++.+++.+++...+.+..+...++.++.++..++.++++....+..+...+++++.
T Consensus      1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHhHHhhhhHHHHHHHhhh-----------------------------------------------------
Q psy8739         483 DAQLWRTKYESEGVARAEELEESKSEE-----------------------------------------------------  509 (558)
Q Consensus       483 e~~~~k~kle~~~~~~~~~~ee~k~~~-----------------------------------------------------  509 (558)
                      ++.+|+.++++.+....+++++.++++                                                     
T Consensus      1358 e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~ 1437 (1930)
T KOG0161|consen 1358 ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQ 1437 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988899999998776                                                     


Q ss_pred             -----------hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8739         510 -----------RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA  558 (558)
Q Consensus       510 -----------~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l~  558 (558)
                                 .....+..+++.++.+.+.+++++.++++.++++.+.++.+.+++++|+
T Consensus      1438 k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~ 1497 (1930)
T KOG0161|consen 1438 KRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS 1497 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       5778888899999999999999999999999999999999999998763

>KOG0161|consensus

Probab=100.00  E-value=1.7e-26  Score=262.10  Aligned_cols=468  Identities=27%  Similarity=0.382  Sum_probs=405.7

Q ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739           2 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES   81 (558)
Q Consensus         2 ~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~   81 (558)
                      +++.+++.++.++.+++.++++..+.++++..+..++.+++.++.+++++.+..+..+.+.+..+..++.++++.++.++
T Consensus      1235 ~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1235 DLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739          82 SGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE  161 (558)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~  161 (558)
                      +.+..       +.+.+.+++.+                 +..|+.++++..+....|.+...++..++.+|+.+++...
T Consensus      1315 r~k~~-------l~~~l~~l~~e-----------------~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~ 1370 (1930)
T KOG0161|consen 1315 REKSA-------LENALRQLEHE-----------------LDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEV 1370 (1930)
T ss_pred             HHHHH-------HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98864       45566665544                 5889999999999999999999999999999999998752


Q ss_pred             ----hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH--------
Q psy8739         162 ----GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQA--------  229 (558)
Q Consensus       162 ----~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~--------  229 (558)
                          .+++..++++...+..++..+..+......+++.+.+++.++.++...++........++++.+.+..        
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                66788888888888888888888888888888888888888888888777766655555555444332        


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHH
Q psy8739         230 --------------------RIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMS  288 (558)
Q Consensus       230 --------------------~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~  288 (558)
                                          .+..+...++........+.+.++.+..++.++..++.+ .|++.++++..+++ +.++.
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e-~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE-GGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence                                222233333444444557888899999999999999999 56788899888887 88888


Q ss_pred             HHHHHHHHHHHhhH----------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739         289 KLRRDLEEANIQHE----------------------------STLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAA  340 (558)
Q Consensus       289 ~lk~~le~~~~~~~----------------------------~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~l  340 (558)
                      .|+..|+++...+.                            ++++..++.|+..|..++..++...+.+..+-+.++++
T Consensus      1530 elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkl 1609 (1930)
T KOG0161|consen 1530 ELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKL 1609 (1930)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh
Confidence            88888877664332                            34556778889999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI  420 (558)
Q Consensus       341 e~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~  420 (558)
                      +.++.+++..++.+++...++.+.++++...+.+++..+++......++.+++..++..+..+...++++...+..+.+.
T Consensus      1610 e~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1610 EGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERA 1689 (1930)
T ss_pred             hcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739         421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE  494 (558)
Q Consensus       421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~  494 (558)
                      ++.++.++.++...+......+..+....+.++.++..++..+++.............++..++..+...+..+
T Consensus      1690 rr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~E 1763 (1930)
T KOG0161|consen 1690 RRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKE 1763 (1930)
T ss_pred             HHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888777777777777777777666544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.97  E-value=1.1e-32  Score=303.07  Aligned_cols=466  Identities=29%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739           2 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES   81 (558)
Q Consensus         2 ~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~   81 (558)
                      ++++.++.++.++.+++.++++..+.++++...+.+|.+++.+|..++++.+..+..+.+.+.++.++|.+++..+++++
T Consensus       177 ~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEt  256 (859)
T PF01576_consen  177 EAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEET  256 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739          82 SGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE  161 (558)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~  161 (558)
                      +.+..       +.+.+.+++.+                 +..|++.++++......+.+.+.+++.+|.+|+.+|+...
T Consensus       257 r~k~~-------L~~~l~~le~e-----------------~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~  312 (859)
T PF01576_consen  257 RAKQA-------LEKQLRQLEHE-----------------LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA  312 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhh-------hHHHHHHHHHH-----------------HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            98864       34555555444                 5788899999999999999999999999999999998753


Q ss_pred             ----hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH-------
Q psy8739         162 ----GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQAR-------  230 (558)
Q Consensus       162 ----~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~-------  230 (558)
                          ..++.+|++|...+.++...++.....+..+++.+.++..++.++...++...+.+..+.++.+.|...       
T Consensus       313 ~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~  392 (859)
T PF01576_consen  313 EQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK  392 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                467888999999999999999999999999999999999999998888888777766666665444443       


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHH
Q psy8739         231 ---------------------IEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMS  288 (558)
Q Consensus       231 ---------------------i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~  288 (558)
                                           +..|...++........+.+.++.|..+|.++..++++ +|.+.+.++..++. +.++.
T Consensus       393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~-~~k~v~eLek~kr~LE~e~~  471 (859)
T PF01576_consen  393 VEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD-AGKSVHELEKAKRRLEQEKE  471 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hccchHHHHHHHHHHHHHHH
Confidence                                 33344444444555557788888888889888888888 55667777776665 66666


Q ss_pred             HHHHHHHHHH----------------------------HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739         289 KLRRDLEEAN----------------------------IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAA  340 (558)
Q Consensus       289 ~lk~~le~~~----------------------------~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~l  340 (558)
                      .++..|++..                            ...+.+++..|+.|+..|..|+..|+...+.++.+.+.+++|
T Consensus       472 El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKL  551 (859)
T PF01576_consen  472 ELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKL  551 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6665555443                            333456778899999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         341 HNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI  420 (558)
Q Consensus       341 e~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~  420 (558)
                      +.+|.+|...+++.++...++.+.++++...+.+++..+++..+....+...+..++..+..+...++++...+..+.+.
T Consensus       552 E~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~  631 (859)
T PF01576_consen  552 ESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERA  631 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         421 KISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       421 ~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .+.++..+.++...+..+...+.++....+.++.++..|...+++.......+...+.++..++..+...+-
T Consensus       632 rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~  703 (859)
T PF01576_consen  632 RKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELR  703 (859)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988777777666666666666655554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.96  E-value=1.3e-31  Score=294.57  Aligned_cols=373  Identities=58%  Similarity=0.804  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         186 ERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGER  265 (558)
Q Consensus       186 ~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~  265 (558)
                      ...+..++..+.+.++++..+..+++++.+.+..+++.++.|+++|.+|+++|+.++..+.++++.+++|..++++|...
T Consensus         3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~   82 (859)
T PF01576_consen    3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKER   82 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy8739         266 LEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETN  345 (558)
Q Consensus       266 l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~  345 (558)
                      |++++|.+.++.+..++++.++..|+..|++....|+..+..+|++|...|.+|..+|+.+.+.+..+++.+..+..+++
T Consensus        83 Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~  162 (859)
T PF01576_consen   83 LEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELD  162 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         346 NTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT  425 (558)
Q Consensus       346 ~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~  425 (558)
                      ++...++.+.+.+..+++.++.++.++.+++..+++..+.++++.....++..++.+|..++++....+..+.+....+.
T Consensus       163 dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~  242 (859)
T PF01576_consen  163 DLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLE  242 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHH
Q psy8739         426 TQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEES  505 (558)
Q Consensus       426 ~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~  505 (558)
                      .+|.+++..++++.+.+..+...++.++.++..+..++++...++..+...+++++.++..|+.+|+.++..+.+.++++
T Consensus       243 ~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEea  322 (859)
T PF01576_consen  243 SQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEA  322 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh----------------------------------------------------------------hhHHHHHHHHHH
Q psy8739         506 KSEE----------------------------------------------------------------RRVDDLAAELDA  521 (558)
Q Consensus       506 k~~~----------------------------------------------------------------~~~~~l~~~~~~  521 (558)
                      ++++                                                                ..+..+...++.
T Consensus       323 KKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~  402 (859)
T PF01576_consen  323 KKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA  402 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9877                                                                567778888999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8739         522 SQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA  558 (558)
Q Consensus       522 ~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l~  558 (558)
                      ++.+++.++++++.+++.|+++...+..+.++++.|+
T Consensus       403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~  439 (859)
T PF01576_consen  403 AQREARELETELFKLKNELEELQEQLEELERENKQLQ  439 (859)
T ss_dssp             -------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998874

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.65  E-value=7.1e-09  Score=118.23  Aligned_cols=45  Identities=33%  Similarity=0.523  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE  267 (558)
Q Consensus       223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~  267 (558)
                      .+..++..+..+..++................+..++.++...+.
T Consensus       357 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333344444444444444444444444444444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.58  E-value=1e-07  Score=108.83  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=20.2

Q ss_pred             HHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHH
Q psy8739          31 FDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTK   74 (558)
Q Consensus        31 ~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~   74 (558)
                      +...+..++.++.++...+......+..+......+...+.++.
T Consensus       204 l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~  247 (880)
T PRK02224        204 LHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE  247 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555544444444444444443333333

>KOG0977|consensus

Probab=99.56  E-value=6.1e-11  Score=120.64  Aligned_cols=342  Identities=19%  Similarity=0.237  Sum_probs=223.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739         121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD  200 (558)
Q Consensus       121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~  200 (558)
                      ++..|+++|..+.+++.+|+.++.+|+.+|..++..+.   .+....+-.++.++..+..-+++..+....++..+.++.
T Consensus        43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~  119 (546)
T KOG0977|consen   43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG---RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLR  119 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            57999999999999999999999999999999998876   333457788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy8739         201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN  280 (558)
Q Consensus       201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~  280 (558)
                      .++.+++..++.....+......+..+...+..++.++...+.....++-+.+.|..+...|...|..+......+.-..
T Consensus       120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr  199 (546)
T KOG0977|consen  120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR  199 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888899999999999999888888777777777777777777776666655422111111111


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-HHHH
Q psy8739         281 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA-REKA  359 (558)
Q Consensus       281 ~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~-~~~~  359 (558)
                      ...+..+..|...|.-....|..++...+..+.....         ...+.-+   +.+|...+.++.++++... ..+.
T Consensus       200 ~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t---------~~~r~~F---~~eL~~Ai~eiRaqye~~~~~nR~  267 (546)
T KOG0977|consen  200 VDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT---------ADNREYF---KNELALAIREIRAQYEAISRQNRK  267 (546)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc---------ccchHHH---HHHHHHHHHHHHHHHHHHHHHhHH
Confidence            1114455555555555555554444444333322220         0111111   1245556666677766643 2333


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         360 ATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEG  439 (558)
Q Consensus       360 ~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~  439 (558)
                      +++.   .+...|.+++....-.....+...+.+..+...+..|..++       .+++.....+..+|.+|+.++++..
T Consensus       268 diE~---~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-------selE~~n~~L~~~I~dL~~ql~e~~  337 (546)
T KOG0977|consen  268 DIES---WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-------SELESRNSALEKRIEDLEYQLDEDQ  337 (546)
T ss_pred             HHHH---HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-------ccccccChhHHHHHHHHHhhhhhhh
Confidence            3333   45566666665444444444555555555555555555444       4455555556666666666666654


Q ss_pred             HHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739         440 RERAT----LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE  494 (558)
Q Consensus       440 ~~~~~----l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~  494 (558)
                      +....    -...+..+..+|..+..+|+.+..       ..-.|+.+|+.|+.-|+++
T Consensus       338 r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD-------~ki~Ld~EI~~YRkLLege  389 (546)
T KOG0977|consen  338 RSFEQALNDKDAEIAKMREECQQLSVELQKLLD-------TKISLDAEIAAYRKLLEGE  389 (546)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-------hHhHHHhHHHHHHHHhccc
Confidence            43222    223444445555555555554444       3445788899999888753

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=99.50  E-value=1.6e-09  Score=108.01  Aligned_cols=303  Identities=23%  Similarity=0.347  Sum_probs=177.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739         121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD  200 (558)
Q Consensus       121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~  200 (558)
                      .+..|+++|..+.+++..|+..+..|+.+|..+.....   ......+..++.++..++..++.+......+...+..+.
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~---~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~   81 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKG---EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK   81 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc---ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence            46899999999999999999999999999999988864   233457788899999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy8739         201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN  280 (558)
Q Consensus       201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~  280 (558)
                      .++.+++.+++.....+..       ++..|..+...++.+...+..++.                              
T Consensus        82 ~e~~~~r~k~e~e~~~~~~-------le~el~~lrk~ld~~~~~r~~le~------------------------------  124 (312)
T PF00038_consen   82 EELEDLRRKYEEELAERKD-------LEEELESLRKDLDEETLARVDLEN------------------------------  124 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhhhhhhhHhHHHH------------------------------
Confidence            8888888888776433333       333333333333333333222222                              


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhHHHHHHHHHHHHH-HHH
Q psy8739         281 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAE-HERNAAHNETNNTRAAADQLA-REK  358 (558)
Q Consensus       281 ~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~~~~~k~~le-~~~~~le~e~~~l~~~le~~~-~~~  358 (558)
                           .+..|+.++.....           .|...|..|+.++.  ...-..+. -....|...+.++..+++... +.+
T Consensus       125 -----~i~~L~eEl~fl~~-----------~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~  186 (312)
T PF00038_consen  125 -----QIQSLKEELEFLKQ-----------NHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR  186 (312)
T ss_dssp             -----HHHHHHHHHHHHHH-----------HHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHh-----------hhhhhhhhhhhccc--cccceeecccccccchhhhhhHHHHHHHHHhhhh
Confidence                 22223333222222           22222222222221  00000000 011234444444444444322 222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         359 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE  438 (558)
Q Consensus       359 ~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~  438 (558)
                      .+++.   .+...+.++........       .....+..++..++..+..+...+..+......++..|.++...+...
T Consensus       187 ~e~e~---~y~~k~~~l~~~~~~~~-------~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~  256 (312)
T PF00038_consen  187 EELEE---WYQSKLEELRQQSEKSS-------EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE  256 (312)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhh---hcccccccccccccccc-------cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence            23222   34444544444443333       333344444555555555555555555555666777777777666543


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739         439 GRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE  494 (558)
Q Consensus       439 ~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~  494 (558)
                         ...+...+..++.++..++..+.........|....-.|+.+|+.|++-|+++
T Consensus       257 ---~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgE  309 (312)
T PF00038_consen  257 ---REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGE  309 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             ---HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Confidence               45566677778888888888888888888888888888999999999999753

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.35  E-value=2.3e-06  Score=92.62  Aligned_cols=95  Identities=25%  Similarity=0.347  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA  253 (558)
Q Consensus       174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~  253 (558)
                      ...+++..++-+.......+.....|+.+++.++.+++.....++.....+..++.....+..++...+......+....
T Consensus       316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~  395 (775)
T PF10174_consen  316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN  395 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345566666777777777778888888888888888887777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8739         254 DLARELEELGERLEE  268 (558)
Q Consensus       254 ~l~~el~~l~~~l~~  268 (558)
                      .|...|+.|...+.+
T Consensus       396 ~Lq~kie~Lee~l~e  410 (775)
T PF10174_consen  396 VLQKKIENLEEQLRE  410 (775)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777776654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.34  E-value=7.7e-06  Score=96.59  Aligned_cols=8  Identities=13%  Similarity=0.588  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q psy8739         316 VSEMGEQI  323 (558)
Q Consensus       316 i~~L~~~l  323 (558)
                      +..++..+
T Consensus       746 ip~l~~~l  753 (1311)
T TIGR00606       746 IPELRNKL  753 (1311)
T ss_pred             chhHHHHH
Confidence            33333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4674|consensus

Probab=99.33  E-value=6e-06  Score=94.86  Aligned_cols=34  Identities=26%  Similarity=0.282  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy8739         513 DDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ  546 (558)
Q Consensus       513 ~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~  546 (558)
                      ..+...++....++.-|..+...|+.+..++...
T Consensus      1267 ~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1267 KELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444455555444444

>KOG4674|consensus

Probab=99.33  E-value=6.3e-06  Score=94.70  Aligned_cols=47  Identities=15%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      ...+..+..++.-++..+.+...........+..+..++..|+.++.
T Consensus      1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred             HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555566677778888888888886

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.29  E-value=5.5e-06  Score=89.80  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8739         181 AVADLERNKKELEQTIQRKDKEIASL  206 (558)
Q Consensus       181 ~~~~~~~~~~~le~~~~~l~~el~~l  206 (558)
                      .+.+....+..++..+..+..+...+
T Consensus       184 ~~~~~e~~~~~le~lle~~e~~~~~~  209 (775)
T PF10174_consen  184 RIREAEARIMRLESLLERKEKEHMEA  209 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44455555555555555555555433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.22  E-value=3.1e-05  Score=91.59  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=22.3

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739         336 ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE  381 (558)
Q Consensus       336 ~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e  381 (558)
                      .+..++..+.++...+..+......+...+..+...+..+...+..
T Consensus       882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  927 (1311)
T TIGR00606       882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE  927 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3344555555555555555544444444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.19  E-value=4.2e-05  Score=90.60  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         514 DLAAELDASQKECRNYS-------TELFRLKGAYEEAQEQLEAVRRENK  555 (558)
Q Consensus       514 ~l~~~~~~~~~~~~~~e-------~e~~~l~~~l~e~~~~~~~l~~~~~  555 (558)
                      .+...+..+...+..+.       .+|..+..++.++..++.++.....
T Consensus       955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~ 1003 (1164)
T TIGR02169       955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003 (1164)
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443       2445555555555555554444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.10  E-value=8.9e-05  Score=86.65  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739         514 DLAAELDASQKECRNYST-------ELFRLKGAYEEAQEQLEAVRRENKNL  557 (558)
Q Consensus       514 ~l~~~~~~~~~~~~~~e~-------e~~~l~~~l~e~~~~~~~l~~~~~~l  557 (558)
                      .+...+..++..+..+.+       +|..+..+++++...+.++...+..|
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l  996 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL  996 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556655555544       67777777777777777766665544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.90  E-value=8.9e-05  Score=73.89  Aligned_cols=109  Identities=23%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739         122 SQDTVDRLQQEEDA-RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD  200 (558)
Q Consensus       122 ~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~  200 (558)
                      ...|...+...... ..........++.++.+++..++..    ...+.++..++..+...+.++..++......+..++
T Consensus        27 N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~----~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le  102 (312)
T PF00038_consen   27 NKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDL----SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE  102 (312)
T ss_dssp             HHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhH----HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443333 2333344555666666666666433    356777888888888888888888888888888899


Q ss_pred             HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         201 KEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE  241 (558)
Q Consensus       201 ~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~  241 (558)
                      .++..++..++........+       +.+|..|..++...
T Consensus       103 ~el~~lrk~ld~~~~~r~~l-------e~~i~~L~eEl~fl  136 (312)
T PF00038_consen  103 EELESLRKDLDEETLARVDL-------ENQIQSLKEELEFL  136 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhhHhHH-------HHHHHHHHHHHHHH
Confidence            99999998888776655544       44555555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.88  E-value=0.00057  Score=80.04  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8739         177 LTQEAVADLERNKKELEQTIQRKDKEIASLT  207 (558)
Q Consensus       177 ~~~~~~~~~~~~~~~le~~~~~l~~el~~l~  207 (558)
                      .+..++..+......+......+..++.++.
T Consensus       401 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~  431 (1163)
T COG1196         401 ELKREIESLEERLERLSERLEDLKEELKELE  431 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>PRK03918 chromosome segregation protein; Provisional

Probab=98.86  E-value=0.00053  Score=78.64  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8739         250 KQRADLARELEELGER  265 (558)
Q Consensus       250 ~~~~~l~~el~~l~~~  265 (558)
                      .....+...+..+...
T Consensus       412 ~~~~~~~~~i~eL~~~  427 (880)
T PRK03918        412 ARIGELKKEIKELKKA  427 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.78  E-value=0.00037  Score=71.94  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy8739         511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEA  543 (558)
Q Consensus       511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~  543 (558)
                      .++-++.+.+.+..+..++-..+..|..+++..
T Consensus       425 ~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  425 SLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444455555555555555555554444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612|consensus

Probab=98.78  E-value=0.00066  Score=74.86  Aligned_cols=280  Identities=17%  Similarity=0.253  Sum_probs=153.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         171 IEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEK  250 (558)
Q Consensus       171 le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~  250 (558)
                      +..++......+......+..+...+..++.++..++............+....+.+.....++..+.+.....+.....
T Consensus       492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e  571 (1317)
T KOG0612|consen  492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE  571 (1317)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence            45666666667777777777777777777777777766555555555555555566666666666555555444443333


Q ss_pred             HHHHHHHHHH---HHHHHHHhhcCC----------CHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy8739         251 QRADLARELE---ELGERLEEAGGA----------TSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVS  317 (558)
Q Consensus       251 ~~~~l~~el~---~l~~~l~~~~~~----------~~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~  317 (558)
                      -.+.++..+.   ++...+......          ....++..++...++......++.....+........... ..+.
T Consensus       572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l-~k~~  650 (1317)
T KOG0612|consen  572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKEL-LKVE  650 (1317)
T ss_pred             hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHH-HHHH
Confidence            3333333332   222211111000          0000111111111111111111111111111111100000 0111


Q ss_pred             HHHHHHHHHHHHHHHHHH--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739         318 EMGEQIDQLNKLKTKAEH--ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK  395 (558)
Q Consensus       318 ~L~~~le~~~~~k~~le~--~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~  395 (558)
                      +++.....   .-+..++  ....++..+..+..+++.+......+  ++..-+.++.++...+.+....+..+......
T Consensus       651 el~r~~~e---~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~  725 (1317)
T KOG0612|consen  651 ELKRENQE---RISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLE  725 (1317)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            11111100   0011111  23344444444555555554444433  23333778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy8739         396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI  456 (558)
Q Consensus       396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~  456 (558)
                      +..++..|...+-........+.+....+...+..|+..++.+...+..+...++....++
T Consensus       726 i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~  786 (1317)
T KOG0612|consen  726 IEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEV  786 (1317)
T ss_pred             HHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhh
Confidence            9999999999888888888888999999999999999999999999999988887444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.69  E-value=0.001  Score=71.67  Aligned_cols=53  Identities=9%  Similarity=0.159  Sum_probs=25.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q psy8739         337 RNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDF  389 (558)
Q Consensus       337 ~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l  389 (558)
                      ...+...++.|-..++....++...++....+...+..+..........+..+
T Consensus       284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l  336 (569)
T PRK04778        284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV  336 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555544444444444433333

>KOG0977|consensus

Probab=98.69  E-value=0.00034  Score=72.19  Aligned_cols=112  Identities=13%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHH
Q psy8739         424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELE  503 (558)
Q Consensus       424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~e  503 (558)
                      +...|.+++....-.......+.+.+..+...+..|+.++.+++.....|...|..|+..+..-++.|+..+.....++.
T Consensus       273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~  352 (546)
T KOG0977|consen  273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA  352 (546)
T ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            34455555544444444455566667777777777777777777777777777777777777766666644444444444


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy8739         504 ESKSEERRVDDLAAELDASQKECRNYSTELFRLKG  538 (558)
Q Consensus       504 e~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~  538 (558)
                      .++   ..+..+..++..+-.-.-.|..++...+.
T Consensus       353 ~mR---eec~~l~~Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  353 KMR---EECQQLSVELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             HHH---HHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence            444   23444444444444444444444444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.62  E-value=0.0002  Score=67.90  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQL  486 (558)
Q Consensus       407 l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~  486 (558)
                      ++.+...+..+...+..+.+.+..+.............+...++.|...+..+-..++........|+..+..+..++..
T Consensus       136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~  215 (237)
T PF00261_consen  136 AEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK  215 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344444444444444433333444555555555555555555555666666666666666666666


Q ss_pred             HHHhhH
Q psy8739         487 WRTKYE  492 (558)
Q Consensus       487 ~k~kle  492 (558)
                      |+.++.
T Consensus       216 ~k~~~~  221 (237)
T PF00261_consen  216 EKEKYK  221 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666664

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.58  E-value=0.00016  Score=68.54  Aligned_cols=79  Identities=24%  Similarity=0.373  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhh
Q psy8739           5 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSG   83 (558)
Q Consensus         5 ~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~   83 (558)
                      ++...+...+.....++......+............++..|.+.+..++..+.............|.++...+++..++
T Consensus         1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~   79 (237)
T PF00261_consen    1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERA   79 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777777777777777777777777777777777776666666655566666666655555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0971|consensus

Probab=98.57  E-value=0.002  Score=68.80  Aligned_cols=303  Identities=20%  Similarity=0.239  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Q psy8739         226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR-EAEMSKLRRDLEEANIQHEST  304 (558)
Q Consensus       226 ~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~e~~~~~-e~el~~lk~~le~~~~~~~~~  304 (558)
                      .|..++.+|.+.|+..+-.+..-....    .+++.+..++....        .-+.+ ......|+.+|-++.......
T Consensus       228 eLr~QvrdLtEkLetlR~kR~EDk~Kl----~Elekmkiqleqlq--------EfkSkim~qqa~Lqrel~raR~e~kea  295 (1243)
T KOG0971|consen  228 ELRAQVRDLTEKLETLRLKRAEDKAKL----KELEKMKIQLEQLQ--------EFKSKIMEQQADLQRELKRARKEAKEA  295 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378889999999988876654322111    22333333333211        01111 233445555555555433322


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy8739         305 LANLRKKHNDAVSEMGEQIDQLNKLKT-------KAEHERNAAHNETNNTRAAADQLAREKAAT--------EKIAKQLQ  369 (558)
Q Consensus       305 ~~~lr~~~~~~i~~L~~~le~~~~~k~-------~le~~~~~le~e~~~l~~~le~~~~~~~~~--------e~~~~~le  369 (558)
                      + .++.+|...+.++...++-..=.+.       .+..+...+...+++|...++-+..+..+-        .-+.+.++
T Consensus       296 q-e~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlE  374 (1243)
T KOG0971|consen  296 Q-EAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLE  374 (1243)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHH
Confidence            2 3445566666666665543221121       222333333333444444444333222110        01233333


Q ss_pred             HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy8739         370 HQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRE---RATLL  446 (558)
Q Consensus       370 ~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~---~~~l~  446 (558)
                      .+-..|+..+--++...+.-.....++..++.....++.++......+.+....++..|.+++.+++..--+   ...+-
T Consensus       375 qqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt  454 (1243)
T KOG0971|consen  375 QQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT  454 (1243)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence            333333333333333333333444455555555666666666666666666666677777777766643211   11111


Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy8739         447 GKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKEC  526 (558)
Q Consensus       447 ~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~  526 (558)
                      ...-.++..+..|...+.+++. .       ..++.++......++.   .+-++++.++   ..+.++...+++++.-+
T Consensus       455 dknlnlEekVklLeetv~dlEa-l-------ee~~EQL~Esn~ele~---DLreEld~~~---g~~kel~~r~~aaqet~  520 (1243)
T KOG0971|consen  455 DKNLNLEEKVKLLEETVGDLEA-L-------EEMNEQLQESNRELEL---DLREELDMAK---GARKELQKRVEAAQETV  520 (1243)
T ss_pred             hhccCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHH---HHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence            1222233444444333333321 1       1222233333333332   1222333333   45577888889999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         527 RNYSTELFRLKGAYEEAQEQLEAVRRENK  555 (558)
Q Consensus       527 ~~~e~e~~~l~~~l~e~~~~~~~l~~~~~  555 (558)
                      -++..-|.++|..+.-+.+++..+..+..
T Consensus       521 yDrdqTI~KfRelva~Lqdqlqe~~dq~~  549 (1243)
T KOG0971|consen  521 YDRDQTIKKFRELVAHLQDQLQELTDQQE  549 (1243)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999989888888876554

>KOG0996|consensus

Probab=98.51  E-value=0.0037  Score=68.91  Aligned_cols=96  Identities=14%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         173 GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQR  252 (558)
Q Consensus       173 ~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~  252 (558)
                      +++..++.++..+........+....+..-+..+...+.+....+..+...+..+...+.+...++...+..-..+....
T Consensus       500 ~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~  579 (1293)
T KOG0996|consen  500 SELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQL  579 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            44444445555555555555555555555555556666666666666666666666666666666666655555555556


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy8739         253 ADLARELEELGERLEE  268 (558)
Q Consensus       253 ~~l~~el~~l~~~l~~  268 (558)
                      ..+...+.++...+..
T Consensus       580 ~~~rqrveE~ks~~~~  595 (1293)
T KOG0996|consen  580 NKLRQRVEEAKSSLSS  595 (1293)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6666666666665544

>KOG0971|consensus

Probab=98.48  E-value=0.0034  Score=67.06  Aligned_cols=173  Identities=22%  Similarity=0.294  Sum_probs=88.0

Q ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ  243 (558)
Q Consensus       164 le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~  243 (558)
                      +..+|.++-....+++.++-........+.....++..++.+...-++=     ..+++.+.  +.+.+.|+.+++..+.
T Consensus       267 lqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmA--EERaesLQ~eve~lkE  339 (1243)
T KOG0971|consen  267 LQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMA--EERAESLQQEVEALKE  339 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHH--HHHHHHHHHHHHHHHH
Confidence            3345555555555555555555555555555555555555544433222     23333332  2233344444444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q psy8739         244 SRAKAEKQRADLARELEELGERLEEAGGAT----SAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM  319 (558)
Q Consensus       244 ~~~~~~~~~~~l~~el~~l~~~l~~~~~~~----~~~~e~~~~~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L  319 (558)
                      ..       ..|+.+++-|+..+.+.++..    ..++   +..+..-..|+..+-....-... -...+.+....++-.
T Consensus       340 r~-------deletdlEILKaEmeekG~~~~~~ss~qf---kqlEqqN~rLKdalVrLRDlsA~-ek~d~qK~~kelE~k  408 (1243)
T KOG0971|consen  340 RV-------DELETDLEILKAEMEEKGSDGQAASSYQF---KQLEQQNARLKDALVRLRDLSAS-EKQDHQKLQKELEKK  408 (1243)
T ss_pred             HH-------HHHHHHHHHHHHHHHhcCCCCcccchHHH---HHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHH
Confidence            33       334455555555555544322    2222   11244445555555444322111 111223445566666


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy8739         320 GEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQL  354 (558)
Q Consensus       320 ~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~  354 (558)
                      +.++..+.+.+..+.+....++..+.++..+++.+
T Consensus       409 ~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA  443 (1243)
T KOG0971|consen  409 NSELEELRRQKERLSRELDQAESTIADLKEQVDAA  443 (1243)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777777777777788888888888777664

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.42  E-value=0.0039  Score=64.88  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=22.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739         525 ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL  557 (558)
Q Consensus       525 ~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l  557 (558)
                      -..+++.++..++..+..+..++..-.-+...|
T Consensus       740 ~k~sLE~ELs~lk~el~slK~QLk~e~~eKE~l  772 (786)
T PF05483_consen  740 HKASLELELSNLKNELSSLKKQLKTERTEKEKL  772 (786)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            445666677777777777777777666554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.41  E-value=0.0049  Score=65.50  Aligned_cols=10  Identities=10%  Similarity=0.288  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q psy8739         125 TVDRLQQEED  134 (558)
Q Consensus       125 l~~~l~~~~~  134 (558)
                      +...+..+..
T Consensus        39 ~qeel~~~k~   48 (522)
T PF05701_consen   39 AQEELAKLKE   48 (522)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.32  E-value=0.0065  Score=62.97  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE  553 (558)
Q Consensus       511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~  553 (558)
                      .+.++...+.-++.+...+..+-..|..-+..|+.++..+-..
T Consensus       418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~  460 (546)
T PF07888_consen  418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE  460 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5556777777778888888888888888888888887776443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612|consensus

Probab=98.30  E-value=0.012  Score=65.34  Aligned_cols=145  Identities=21%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR  475 (558)
Q Consensus       396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~  475 (558)
                      ++.++..+...+.........+  .+..-..++.++...+.+....+..+......+..++..|+..+-........+..
T Consensus       672 ~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r  749 (1317)
T KOG0612|consen  672 LERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRR  749 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhh
Confidence            4444444444444443333222  23333677788888888888888888888888999999999888888877788888


Q ss_pred             HHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy8739         476 QLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQL  547 (558)
Q Consensus       476 ~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~  547 (558)
                      ....+..++..+..+++.+...+.....+++..-..+..     +.+++++..+...+..++..++.-..++
T Consensus       750 ~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~  816 (1317)
T KOG0612|consen  750 SKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENAQL  816 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888876554444333333321111111     4445555555555555555555443333

>KOG0996|consensus

Probab=98.27  E-value=0.014  Score=64.61  Aligned_cols=43  Identities=23%  Similarity=0.425  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         199 KDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE  241 (558)
Q Consensus       199 l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~  241 (558)
                      +..++.+|+..+.........+-+..+.+...+..+...+...
T Consensus       547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~  589 (1293)
T KOG0996|consen  547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA  589 (1293)
T ss_pred             HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333343333333443333333

>KOG4643|consensus

Probab=98.26  E-value=0.013  Score=63.75  Aligned_cols=195  Identities=17%  Similarity=0.276  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA  253 (558)
Q Consensus       174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~  253 (558)
                      ++.-+.+.++++.....-|-..+..++.++..++.+.+.     ..++..+-.++.++..+..+.+..+...+.+.-++.
T Consensus       258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns  332 (1195)
T KOG4643|consen  258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS  332 (1195)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            334456677777777777777777777777777775543     567777888888888888888887777777777777


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Q psy8739         254 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI--QHESTLANLRKKHNDAVSEMGE-QIDQLNKLK  330 (558)
Q Consensus       254 ~l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~--~~~~~~~~lr~~~~~~i~~L~~-~le~~~~~k  330 (558)
                      .|+..-..|..+++-...-  +..+     +.+-..+..+-+....  .+...+.+  +++...+.+++. .++..-...
T Consensus       333 tLq~q~eqL~~~~ellq~~--se~~-----E~en~Sl~~e~eqLts~ralkllLEn--rrlt~tleelqsss~Ee~~SK~  403 (1195)
T KOG4643|consen  333 TLQVQKEQLDGQMELLQIF--SENE-----ELENESLQVENEQLTSDRALKLLLEN--RRLTGTLEELQSSSYEELISKH  403 (1195)
T ss_pred             HHHHHHHHhhhhhhHhhhh--hcch-----hhhhhhHHHHHHHhhhHHHHHHHHHh--HHHHHHHHHHhhhhHHHHHHHH
Confidence            7766665555444321110  0000     1111112222222211  11111111  112222222222 112222223


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy8739         331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDET  382 (558)
Q Consensus       331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~  382 (558)
                      ..++++.+.|...+..|...+..+.+....++..-+.+..+...+.......
T Consensus       404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~  455 (1195)
T KOG4643|consen  404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV  455 (1195)
T ss_pred             HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666777777776666666666666666655555555544433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.25  E-value=0.011  Score=62.76  Aligned_cols=50  Identities=24%  Similarity=0.164  Sum_probs=25.4

Q ss_pred             HHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhh
Q psy8739          30 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADE   79 (558)
Q Consensus        30 ~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~   79 (558)
                      .....+..++.++..|..++...+....+...+......-+.+|+..++.
T Consensus        31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~   80 (522)
T PF05701_consen   31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK   80 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555544444444444444444444443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643|consensus

Probab=98.13  E-value=0.024  Score=61.77  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         124 DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDI  157 (558)
Q Consensus       124 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~  157 (558)
                      -+.+++++..+.+..|-..+.=|+.||..+++..
T Consensus       261 fykdRveelkedN~vLleekeMLeeQLq~lrars  294 (1195)
T KOG4643|consen  261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS  294 (1195)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            3566666666666666666666666666665554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.02  E-value=0.028  Score=58.74  Aligned_cols=83  Identities=23%  Similarity=0.327  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         185 LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQ-------IKELQARIEELEEEVEAERQSRAKAEKQRADLAR  257 (558)
Q Consensus       185 ~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~-------~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~  257 (558)
                      ....+.-|...+...+..+.++...+...+..+..++..       ++......+.|..+|...+..........+.|+.
T Consensus       238 kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~  317 (786)
T PF05483_consen  238 KEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEE  317 (786)
T ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444445555555544444444444333       4455555666667777666666666666666666


Q ss_pred             HHHHHHHHHH
Q psy8739         258 ELEELGERLE  267 (558)
Q Consensus       258 el~~l~~~l~  267 (558)
                      ++......+.
T Consensus       318 ~lq~~~k~~~  327 (786)
T PF05483_consen  318 DLQQATKTLI  327 (786)
T ss_pred             HHHHHHHHHH
Confidence            6555544333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0933|consensus

Probab=97.87  E-value=0.07  Score=58.39  Aligned_cols=89  Identities=15%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS  423 (558)
Q Consensus       344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~  423 (558)
                      +.++...+..+........+...+.+..+..+....+++...+.....+...+...+..|..++..+...+.........
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~  868 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK  868 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence            44444444444444444444444444444445555555444444444444444445555555544444444444444444


Q ss_pred             HHHHHHHHH
Q psy8739         424 LTTQLEDTK  432 (558)
Q Consensus       424 l~~~l~el~  432 (558)
                      +..++.+..
T Consensus       869 ~~~el~~~k  877 (1174)
T KOG0933|consen  869 AQAELKDQK  877 (1174)
T ss_pred             HHHHHHHHH
Confidence            444444333

>PRK01156 chromosome segregation protein; Provisional

Probab=97.86  E-value=0.1  Score=60.03  Aligned_cols=12  Identities=33%  Similarity=0.495  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q psy8739         313 NDAVSEMGEQID  324 (558)
Q Consensus       313 ~~~i~~L~~~le  324 (558)
                      ...+..+...+.
T Consensus       475 ~~~i~~l~~~i~  486 (895)
T PRK01156        475 NEKKSRLEEKIR  486 (895)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444443

>KOG0976|consensus

Probab=97.82  E-value=0.068  Score=56.80  Aligned_cols=27  Identities=15%  Similarity=0.332  Sum_probs=11.4

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         450 RNLEHDIDNIREQLEEEAEGKADLQRQ  476 (558)
Q Consensus       450 ~~le~e~~~l~~~lee~~~~~~~l~~~  476 (558)
                      +.++.+++.+....+-....+..+...
T Consensus       479 rKVeqe~emlKaen~rqakkiefmkEe  505 (1265)
T KOG0976|consen  479 RKVEQEYEMLKAENERQAKKIEFMKEE  505 (1265)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555444444333333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.79  E-value=2e-05  Score=87.49  Aligned_cols=35  Identities=37%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy8739         515 LAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA  549 (558)
Q Consensus       515 l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~  549 (558)
                      +...++.+...+..++.++..++..+..++..+..
T Consensus       501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  501 LSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666666666666666666666554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.73  E-value=0.11  Score=56.28  Aligned_cols=49  Identities=8%  Similarity=0.168  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8739         312 HNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAA  360 (558)
Q Consensus       312 ~~~~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~  360 (558)
                      ....|..|-..++....++..+++....+...+..+..+...+......
T Consensus       287 i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~  335 (569)
T PRK04778        287 IQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR  335 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666665555555555555555555544444444444433333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.64  E-value=0.098  Score=56.80  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQ  376 (558)
Q Consensus       344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~  376 (558)
                      +..+...++.+......+...+..++..+..+.
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333333333333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.61  E-value=0.15  Score=54.89  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q psy8739         248 AEKQRADLARELEEL  262 (558)
Q Consensus       248 ~~~~~~~l~~el~~l  262 (558)
                      ++.....++......
T Consensus       166 Le~~L~~ie~~F~~f  180 (560)
T PF06160_consen  166 LEKQLENIEEEFSEF  180 (560)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.60  E-value=0.00089  Score=74.44  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Q psy8739         185 LERNKKELEQTIQRKDKEIASLTA  208 (558)
Q Consensus       185 ~~~~~~~le~~~~~l~~el~~l~~  208 (558)
                      +..+...++-.+..++.++..|..
T Consensus       303 ~~~el~~lq~e~~~Le~el~sW~s  326 (722)
T PF05557_consen  303 LEEELAELQLENEKLEDELNSWES  326 (722)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555566666666655

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.54  E-value=0.078  Score=57.57  Aligned_cols=21  Identities=10%  Similarity=0.328  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy8739         247 KAEKQRADLARELEELGERLE  267 (558)
Q Consensus       247 ~~~~~~~~l~~el~~l~~~l~  267 (558)
                      .+......+..++..+..++.
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555544

>KOG0994|consensus

Probab=97.52  E-value=0.25  Score=54.90  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy8739         502 LEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA  549 (558)
Q Consensus       502 ~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~  549 (558)
                      +-.+..++..+.+|...++.-+..+..+..++..|..+++.+...|..
T Consensus      1702 l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1702 LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            345666778888999889889999999999999988888888777654

>KOG0976|consensus

Probab=97.49  E-value=0.2  Score=53.36  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHH
Q psy8739         453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESK  506 (558)
Q Consensus       453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k  506 (558)
                      ..+.......+.+.....+.+...+..++..+..++.-++..-..+...++.-.
T Consensus       409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcn  462 (1265)
T KOG0976|consen  409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCN  462 (1265)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHH
Confidence            445555555666666666666666777777777777666544334444444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.49  E-value=2.3e-05  Score=86.65  Aligned_cols=57  Identities=28%  Similarity=0.374  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy8739         142 QKKKLEQENGGLKKDIEDL---EGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK  199 (558)
Q Consensus       142 ~~~~l~~~~~~l~~~~e~~---~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l  199 (558)
                      ....|..+++.|+...+.+   ...+++.|++|+. +..++.++..+......+-..+..+
T Consensus       292 ~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~L  351 (713)
T PF05622_consen  292 EARALRDELDELREKADRADKLENEVEKYKKKLED-LEDLKRQVKELEEDNAVLLETKAML  351 (713)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555554444332   1445555655542 3444444444444444333333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0964|consensus

Probab=97.42  E-value=0.29  Score=53.57  Aligned_cols=197  Identities=21%  Similarity=0.257  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhH-----HHHHhhhhhhhh
Q psy8739           8 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQL-----EDTKRLADEESS   82 (558)
Q Consensus         8 ~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql-----~el~~~~e~e~~   82 (558)
                      +.++....+...-+++.......+..-..-+...+.+|...-+++. .+..+.+.+.+++.-+     .++...++.   
T Consensus       166 rvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~---  241 (1200)
T KOG0964|consen  166 RVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRELNEINGELER---  241 (1200)
T ss_pred             chhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhHHHHHHHHHHH---
Confidence            3455555555666666666666666555556555555555544443 2455666666655544     222222222   


Q ss_pred             hhhhhhhhchhhhhhhhhchhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy8739          83 GWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE-  161 (558)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~-  161 (558)
                                        ++.+....          -..-..+.+.+...++....+...+..|+..+.-+....+.+. 
T Consensus       242 ------------------le~~r~~~----------~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a  293 (1200)
T KOG0964|consen  242 ------------------LEEDRSSA----------PEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKA  293 (1200)
T ss_pred             ------------------HHHHHhcc----------chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                              22221110          1112455666667777777777777777777777777665543 


Q ss_pred             --hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHH
Q psy8739         162 --GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE  236 (558)
Q Consensus       162 --~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~  236 (558)
                        ..+-+.+.+|+-+++++++++..-..........+..+...+.+-...+....+....+..+-..+..+|..|+.
T Consensus       294 ~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~  370 (1200)
T KOG0964|consen  294 RETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ  370 (1200)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence              334445666777777888887766666666666666666666666666666666666555555555555555554

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.35  E-value=0.59  Score=55.40  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         344 TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG  377 (558)
Q Consensus       344 ~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~  377 (558)
                      +..+...+..+......+++.+......+..+..
T Consensus       609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~  642 (1201)
T PF12128_consen  609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKR  642 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>KOG0250|consensus

Probab=97.31  E-value=0.45  Score=53.14  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=24.0

Q ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHH
Q psy8739          14 LNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQ   58 (558)
Q Consensus        14 l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~   58 (558)
                      |.+....+......+......+..+...+..+.+.+.+.+..+..
T Consensus       209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~  253 (1074)
T KOG0250|consen  209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN  253 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            344444444444455555555555566666666666665555543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.30  E-value=0.11  Score=46.04  Aligned_cols=102  Identities=25%  Similarity=0.327  Sum_probs=69.6

Q ss_pred             HHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhhhhhhhhhhhchhhhhhhhhc
Q psy8739          22 DETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSL  101 (558)
Q Consensus        22 ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~~~~~~~~~~~~~~~~~~~~~  101 (558)
                      .++...+.++.....+|..++..++..++..+.....|..+...+..++..++..+..                  .+. 
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~------------------aK~-   64 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK------------------AKA-   64 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH-
Confidence            4566788889999999999999999999999998888888888888887766433222                  111 


Q ss_pred             hhhhhccchhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         102 DLDVLNFTTENSHSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIE  158 (558)
Q Consensus       102 ~~~~~~~~~~~~~~~~le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e  158 (558)
                                      +..++.+|+.-+...++....|-.+...++.+...+-..++
T Consensus        65 ----------------l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~  105 (193)
T PF14662_consen   65 ----------------LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE  105 (193)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            23345566666665666555555555555555555555544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.29  E-value=0.41  Score=52.46  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy8739         510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE  545 (558)
Q Consensus       510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~  545 (558)
                      ..+-+...+++.++..+..-+.||..|+.+|.++..
T Consensus       622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666667777777777777777777777766643

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.28  E-value=0.31  Score=50.82  Aligned_cols=6  Identities=17%  Similarity=0.307  Sum_probs=2.3

Q ss_pred             HHHHHH
Q psy8739         319 MGEQID  324 (558)
Q Consensus       319 L~~~le  324 (558)
                      ++.+++
T Consensus        45 ~~~~l~   50 (428)
T PRK11637         45 NRDQLK   50 (428)
T ss_pred             hHHHHH
Confidence            333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.18  E-value=0.49  Score=51.05  Aligned_cols=15  Identities=33%  Similarity=0.614  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q psy8739         224 IKELQARIEELEEEV  238 (558)
Q Consensus       224 ~~~lq~~i~~l~~el  238 (558)
                      +..|...+..|...+
T Consensus        89 ~~~L~kElE~L~~ql  103 (617)
T PF15070_consen   89 AEHLRKELESLEEQL  103 (617)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.18  E-value=0.12  Score=43.95  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA  443 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~  443 (558)
                      .+..++.++...+.....+..........+..+..++..+...+..+...+..+...+..+...+...+..+.++...+.
T Consensus        25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~  104 (140)
T PF10473_consen   25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS  104 (140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33333333333333333333333333333444444444444444444444444445555555555555555555555555


Q ss_pred             HHHHHHhchHHH
Q psy8739         444 TLLGKFRNLEHD  455 (558)
Q Consensus       444 ~l~~~~~~le~e  455 (558)
                      ++...+..++.+
T Consensus       105 ~~~~~l~~~E~e  116 (140)
T PF10473_consen  105 SLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0933|consensus

Probab=97.16  E-value=0.58  Score=51.59  Aligned_cols=149  Identities=23%  Similarity=0.294  Sum_probs=90.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHhhHHhhHHHHHHHHHHHHH
Q psy8739         118 ISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDV----------EKQKRKIEGDLKLTQEAVADLER  187 (558)
Q Consensus       118 le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~l----------e~~k~~le~el~~~~~~~~~~~~  187 (558)
                      +...+.+....|...+..+........++.....+...-++.....+          +..-.-++.++..+..++..+..
T Consensus       334 i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t  413 (1174)
T KOG0933|consen  334 IRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEAST  413 (1174)
T ss_pred             HHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555544444445555544444444332111          11335567788888888888777


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy8739         188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEV----------EAERQSRAKAEKQRADLAR  257 (558)
Q Consensus       188 ~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el----------~~~~~~~~~~~~~~~~l~~  257 (558)
                      ......-....+..++......+.............+..++..++.+...+          +..+..+..+.....+|..
T Consensus       414 ~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~  493 (1174)
T KOG0933|consen  414 EIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKD  493 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766666666555566666666666677666655          3345666667777777777


Q ss_pred             HHHHHHHHH
Q psy8739         258 ELEELGERL  266 (558)
Q Consensus       258 el~~l~~~l  266 (558)
                      .+..|..++
T Consensus       494 ~~~~l~a~~  502 (1174)
T KOG0933|consen  494 ELDRLLARL  502 (1174)
T ss_pred             HHHHHHhhh
Confidence            777777655

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.16  E-value=0.14  Score=44.22  Aligned_cols=46  Identities=20%  Similarity=0.449  Sum_probs=27.4

Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         447 GKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       447 ~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      ..+...+..+......+.+.......+.+.+..+..+...|-.+|+
T Consensus        87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            3333344455555555555555566666666666677777776665

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.13  E-value=0.00011  Score=81.45  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739         431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEE  466 (558)
Q Consensus       431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~  466 (558)
                      ++..+++....+..+...++.....+..++.++++.
T Consensus       486 L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l  521 (713)
T PF05622_consen  486 LQSQLEDANRRKEKLEEENREANEKILELQSQLEEL  521 (713)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344433333344444333333444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.08  E-value=0.26  Score=46.03  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=15.4

Q ss_pred             HhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         376 QGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ  413 (558)
Q Consensus       376 ~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~  413 (558)
                      ...+.+.+.....+..++..++.++..+..++...+..
T Consensus        44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k   81 (239)
T COG1579          44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK   81 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444444444443333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.06  E-value=0.2  Score=44.47  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         246 AKAEKQRADLARELEELGERLEE  268 (558)
Q Consensus       246 ~~~~~~~~~l~~el~~l~~~l~~  268 (558)
                      ..++-.+..|..++.+|..++..
T Consensus        32 e~~ee~na~L~~e~~~L~~q~~s   54 (193)
T PF14662_consen   32 ETAEEGNAQLAEEITDLRKQLKS   54 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666666666665554

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.02  E-value=0.4  Score=47.24  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE  268 (558)
Q Consensus       227 lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~  268 (558)
                      ++..|.++...++.....+..+..++..|...+..+..+++-
T Consensus       112 Fq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~  153 (309)
T PF09728_consen  112 FQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL  153 (309)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555556666777777777777776654

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.93  E-value=0.9  Score=49.88  Aligned_cols=33  Identities=15%  Similarity=0.054  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         407 LEEAESQVSQLSKIKISLTTQLEDTKRLADEEG  439 (558)
Q Consensus       407 l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~  439 (558)
                      +.+...++..+...+..-+.+|.+|+..|.++.
T Consensus       624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555666666666655543

; GO: 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=96.88  E-value=0.38  Score=48.23  Aligned_cols=11  Identities=9%  Similarity=0.380  Sum_probs=5.5

Q ss_pred             HHHHHHHHhhH
Q psy8739         482 ADAQLWRTKYE  492 (558)
Q Consensus       482 ~e~~~~k~kle  492 (558)
                      .++..|+..+.
T Consensus       190 ~~l~~~~~~~~  200 (343)
T PRK09039        190 QELNRYRSEFF  200 (343)
T ss_pred             HHHHHhHHHHH
Confidence            34455555554

>KOG4673|consensus

Probab=96.86  E-value=0.81  Score=48.22  Aligned_cols=36  Identities=25%  Similarity=0.087  Sum_probs=22.6

Q ss_pred             HHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHh
Q psy8739          32 DAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT   67 (558)
Q Consensus        32 ~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~   67 (558)
                      ...+.++..++..|...|+..+..+....+.+.-+.
T Consensus       345 q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~le  380 (961)
T KOG4673|consen  345 QLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLE  380 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666677777777766666666666554443

>KOG0018|consensus

Probab=96.83  E-value=1.2  Score=49.69  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH---HhhhhHHHHHHHhhhhhHHHHHHH
Q psy8739         442 RATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE---GVARAEELEESKSEERRVDDLAAE  518 (558)
Q Consensus       442 ~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~---~~~~~~~~ee~k~~~~~~~~l~~~  518 (558)
                      +..+..++..++-++++.+.  .+........+..+..++.++..++..-+.-   +... ++++. + ....+.++..+
T Consensus       783 ~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k-~k~~~~~~~~e  857 (1141)
T KOG0018|consen  783 RLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-K-NKSKFEKKEDE  857 (1141)
T ss_pred             HHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-H-HHHHHHHHHHH
Confidence            33444455555555555443  3334444445555555555555555433211   1122 33333 2 24788888999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739         519 LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL  557 (558)
Q Consensus       519 ~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l  557 (558)
                      +.........+-.++..+...+..++..++.+..++.+|
T Consensus       858 ~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l  896 (1141)
T KOG0018|consen  858 INEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL  896 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887654

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.80  E-value=0.5  Score=44.96  Aligned_cols=16  Identities=31%  Similarity=0.426  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8739         227 LQARIEELEEEVEAER  242 (558)
Q Consensus       227 lq~~i~~l~~el~~~~  242 (558)
                      |+..|.-|.-+++..+
T Consensus         4 Lq~eia~LrlEidtik   19 (305)
T PF14915_consen    4 LQDEIAMLRLEIDTIK   19 (305)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555555555555543

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.77  E-value=0.53  Score=44.80  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         224 IKELQARIEELEEEVEAERQSRAKAEK  250 (558)
Q Consensus       224 ~~~lq~~i~~l~~el~~~~~~~~~~~~  250 (558)
                      +..|.+...-|...|+.++..+..++.
T Consensus        65 Ln~L~aENt~L~SkLe~EKq~kerLEt   91 (305)
T PF14915_consen   65 LNVLKAENTMLNSKLEKEKQNKERLET   91 (305)
T ss_pred             HHHHHHHHHHHhHHHHHhHHHHHHHHH
Confidence            333444444455555555544444333

>KOG0978|consensus

Probab=96.76  E-value=1.1  Score=48.36  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA  443 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~  443 (558)
                      ..-+......-|......+...+..+......+...+..+..+...+......+......+..-+...+...-+......
T Consensus       490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~  569 (698)
T KOG0978|consen  490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE  569 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444455555555555555555555555555544444445555555555555555555555555


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .+...+......+..++.++.+..............++.++..++++++
T Consensus       570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE  618 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555556666666666666655555555555666666666666664

>PRK09039 hypothetical protein; Validated

Probab=96.72  E-value=0.45  Score=47.73  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhHHHHHH
Q psy8739         365 AKQLQHQLNEVQGKLDETNRSLNDFDA  391 (558)
Q Consensus       365 ~~~le~~l~el~~~l~e~~~~~~~l~~  391 (558)
                      ...++..+..++..+......+..+..
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~  102 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSRLQA  102 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555444444444443

>KOG1029|consensus

Probab=96.72  E-value=1.1  Score=47.92  Aligned_cols=129  Identities=16%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA  443 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~  443 (558)
                      .+..|...|.+.+..+......+..+...+..+-.++..+..++.+....+-.+--.+..+..++...+...-.......
T Consensus       452 k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s  531 (1118)
T KOG1029|consen  452 KLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS  531 (1118)
T ss_pred             HHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence            34444444555444444444555556666666666777777777777666666655666666666666554433333233


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .|....+.-+.=+..+..+++++......--..++-++..+..|+.-+.
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~  580 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN  580 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3333333333344455555555554444444445555555555555444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.68  E-value=2.3  Score=50.93  Aligned_cols=48  Identities=21%  Similarity=0.390  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739         510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL  557 (558)
Q Consensus       510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l  557 (558)
                      .....+...+..++.....+...+..+...+..+...+..+..+...|
T Consensus       999 ~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863        999 QERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344445555555555555555555566666666666665555554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.67  E-value=1.4  Score=48.17  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-------hhHHHHHHHHHHH
Q psy8739         454 HDIDNIREQLEEEAEGKADLQRQLS----KANADAQLWRTKYESEGVARAEELEESKSEE-------RRVDDLAAELDAS  522 (558)
Q Consensus       454 ~e~~~l~~~lee~~~~~~~l~~~l~----~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-------~~~~~l~~~~~~~  522 (558)
                      .++-.|++-|.--++.+..|...+.    -...-++.+|.+|+.+-....+.+.-+++.+       ..+..+.+-   +
T Consensus       590 eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRam---F  666 (717)
T PF09730_consen  590 EQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAM---F  666 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            4455555555555555555554433    3555677999999988777777777777666       222222222   2


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8739         523 QKECRNYSTELFRLKGAYEEAQEQLEAVR  551 (558)
Q Consensus       523 ~~~~~~~e~e~~~l~~~l~e~~~~~~~l~  551 (558)
                      -.+|.+|-+++..+.+.+...++...+|.
T Consensus       667 a~RCdEYvtQldemqrqL~aAEdEKKTLN  695 (717)
T PF09730_consen  667 AARCDEYVTQLDEMQRQLAAAEDEKKTLN  695 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34556666666666666666555555543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0250|consensus

Probab=96.66  E-value=1.6  Score=48.94  Aligned_cols=65  Identities=14%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739         397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE  461 (558)
Q Consensus       397 e~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~  461 (558)
                      ...+..+...+..+...+..+......+...+.++...+..+..........++....++..+..
T Consensus       660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444444444444444444444444444444444444444555554444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.64  E-value=1.3  Score=47.80  Aligned_cols=45  Identities=24%  Similarity=0.439  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE  268 (558)
Q Consensus       224 ~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~  268 (558)
                      ...|+.++..+..++...+..+.........|+..|.+|+.++..
T Consensus        24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~   68 (617)
T PF15070_consen   24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE   68 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            334555555555555555555555555566666666666665554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.52  E-value=0.71  Score=43.12  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy8739         424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLE  464 (558)
Q Consensus       424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~le  464 (558)
                      +..++.++...+..+......+...+..++..+..+...++
T Consensus       108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e  148 (239)
T COG1579         108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE  148 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444443333

>KOG0980|consensus

Probab=96.48  E-value=1.8  Score=47.29  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       415 ~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .++++..-..+.++..+...+..+......+...+..+...+...+..+.+..+.+.++...+.++......|..+++
T Consensus       413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e  490 (980)
T KOG0980|consen  413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTE  490 (980)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            334444444444455555555554444444444444444444444444444444444555555555555555544444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.33  E-value=2.2  Score=46.65  Aligned_cols=125  Identities=18%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Q psy8739         136 RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG  215 (558)
Q Consensus       136 ~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~  215 (558)
                      ...-...-..|...|.++...+......+    .....+...+.....++...+..++..+.++..++.+++.+=.+...
T Consensus        22 l~esa~~E~~~~~~i~~l~~elk~~~~~~----~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~   97 (717)
T PF09730_consen   22 LQESASKEAYLQQRILELENELKQLRQEL----SNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ   97 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444555667777777776664333222    33345666666777778888888888888888888888887777777


Q ss_pred             HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         216 LVGKNQKQIKELQARIEELEE-EVEAERQSRAKAEKQRADLARELEELGERLEEA  269 (558)
Q Consensus       216 ~~~~~~~~~~~lq~~i~~l~~-el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~  269 (558)
                      ....++...-.||.++.-|.. +++.     ..+.-+++.|..++.-|..+++++
T Consensus        98 dyselEeENislQKqvs~Lk~sQvef-----E~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen   98 DYSELEEENISLQKQVSVLKQSQVEF-----EGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888764 3333     346678889999999999988885

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG4673|consensus

Probab=96.31  E-value=1.9  Score=45.67  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             HHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy8739         488 RTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYST  531 (558)
Q Consensus       488 k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~  531 (558)
                      +.-+..+++.++.+.+.++.+...|-.+...+..+..+...+-.
T Consensus       882 Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lq  925 (961)
T KOG4673|consen  882 RSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQ  925 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555554444444444444444443333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.29  E-value=2.1  Score=46.15  Aligned_cols=106  Identities=16%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhchHHHH
Q psy8739         386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRER---------ATLLGKFRNLEHDI  456 (558)
Q Consensus       386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~---------~~l~~~~~~le~e~  456 (558)
                      .+.+......+...+..+.....+....+..+...-..+...+..++..+....+..         .++...+..+...+
T Consensus       374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i  453 (560)
T PF06160_consen  374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEI  453 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444443333333333433333333332221         11222333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         457 DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       457 ~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ..+...++...-....+...+..+...+..+..+.
T Consensus       454 ~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t  488 (560)
T PF06160_consen  454 EELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT  488 (560)
T ss_pred             HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444443334444444444444444444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0963|consensus

Probab=96.27  E-value=1.9  Score=45.36  Aligned_cols=82  Identities=17%  Similarity=0.166  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-----------------------------hhHHHHHH
Q psy8739         467 AEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-----------------------------RRVDDLAA  517 (558)
Q Consensus       467 ~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-----------------------------~~~~~l~~  517 (558)
                      ...++.+...+......+..++.++...     .+.+++++.+                             ..-..++.
T Consensus       316 ~~qI~~le~~l~~~~~~leel~~kL~~~-----sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~  390 (629)
T KOG0963|consen  316 KAQISALEKELKAKISELEELKEKLNSR-----SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQN  390 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhH
Confidence            3344555666666666666666666421     3455555554                             23344555


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         518 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE  553 (558)
Q Consensus       518 ~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~  553 (558)
                      +...+......+.+++..+....+++.......++-
T Consensus       391 e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~  426 (629)
T KOG0963|consen  391 ENASLRVANSGLSGRITELSKKGEELEAKATEQKEL  426 (629)
T ss_pred             HHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHH
Confidence            555555555555566666666666665555555443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.24  E-value=1.2  Score=42.73  Aligned_cols=12  Identities=42%  Similarity=0.656  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHH
Q psy8739         253 ADLARELEELGE  264 (558)
Q Consensus       253 ~~l~~el~~l~~  264 (558)
                      ..++..+..|..
T Consensus       110 ~~ler~i~~Le~  121 (294)
T COG1340         110 KSLEREIERLEK  121 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.23  E-value=0.92  Score=41.30  Aligned_cols=52  Identities=15%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         385 SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD  436 (558)
Q Consensus       385 ~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le  436 (558)
                      .-+++...+.....++..|+..+-........+.+.++....++.-+...+.
T Consensus        55 ~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~  106 (194)
T PF15619_consen   55 TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK  106 (194)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355555566666666666666666666665666666666666655555544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.16  E-value=2.5  Score=45.61  Aligned_cols=117  Identities=21%  Similarity=0.314  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q psy8739         198 RKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI  277 (558)
Q Consensus       198 ~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~~~  277 (558)
                      .-+.++..++..++........+...+..+...+..+..++.........++...+-. ....+|   +.++ ......+
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~-~k~~~l---L~d~-e~ni~kL  399 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK-KKTVEL---LPDA-EENIAKL  399 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---hcCc-HHHHHHH
Confidence            3444555555555555555555555555555555555555544443333333333211 111111   1110 0112222


Q ss_pred             HHHhhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q psy8739         278 ELNKKR-EAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM  319 (558)
Q Consensus       278 e~~~~~-e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L  319 (558)
                      +..... ...+..|..+.+....-+..++..++..+.....+.
T Consensus       400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~  442 (594)
T PF05667_consen  400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESES  442 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHH
Confidence            222222 445666666666666555555555554443333333

>KOG1003|consensus

Probab=96.01  E-value=1  Score=39.99  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             hhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy8739         377 GKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDI  456 (558)
Q Consensus       377 ~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~  456 (558)
                      ...++..+.+..+.....+++..+..+..++.+.......+.+.....-..|.=+...|+.....-.........+..++
T Consensus        39 q~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~  118 (205)
T KOG1003|consen   39 QAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDL  118 (205)
T ss_pred             hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444555554444443333333333333333333344433333334444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         457 DNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       457 ~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ..+...+..+...-..+..........|..+-.+|
T Consensus       119 ~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL  153 (205)
T KOG1003|consen  119 RILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL  153 (205)
T ss_pred             HHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            55555554444444444444444444444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.99  E-value=2.1  Score=43.33  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8739         315 AVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL  379 (558)
Q Consensus       315 ~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l  379 (558)
                      .|..|...+..+...+..+..+...+..-+.....+...+.....+-.+....++..+..-+..+
T Consensus       162 ~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l  226 (420)
T COG4942         162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL  226 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555555555444444444444443333333333333333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.96  E-value=0.88  Score=38.77  Aligned_cols=86  Identities=19%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         332 KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAE  411 (558)
Q Consensus       332 ~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~  411 (558)
                      .+...+..|+.++..+......+........+.+..+..++..+...+......+..+.+....+...+...+..+.+++
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444455555555555444444444444444444444444444444444444


Q ss_pred             HHHHHH
Q psy8739         412 SQVSQL  417 (558)
Q Consensus       412 ~~~~~~  417 (558)
                      .....+
T Consensus       101 ~~~~~~  106 (140)
T PF10473_consen  101 SLNSSL  106 (140)
T ss_pred             HHhHHH
Confidence            443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.88  E-value=1.4  Score=40.40  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhHH
Q psy8739         472 DLQRQLSKANADAQLWRTKYESEG  495 (558)
Q Consensus       472 ~l~~~l~~l~~e~~~~k~kle~~~  495 (558)
                      .....+...+.+|...++.+..++
T Consensus       140 hAeekL~~ANeei~~v~~~~~~e~  163 (207)
T PF05010_consen  140 HAEEKLEKANEEIAQVRSKHQAEL  163 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344556667777777777776444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.52  E-value=1.3  Score=37.62  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739         395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD  472 (558)
Q Consensus       395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~  472 (558)
                      .+..++..+..........+..+...+........+.+..++.+.-........+..++.++..++..+..+......
T Consensus         7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~   84 (132)
T PF07926_consen    7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES   84 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444445555555555555555555555555555555555555555544443333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.50  E-value=2  Score=39.43  Aligned_cols=110  Identities=13%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhh-
Q psy8739         431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEE-  509 (558)
Q Consensus       431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~-  509 (558)
                      +...+..+.....++...+..+..-+..++..-+.+......+...+.........|+...+..+..-..+++.++++. 
T Consensus        81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~  160 (207)
T PF05010_consen   81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ  160 (207)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3333444444444444444445555555555445455555555566666666666666666655545555555555443 


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy8739         510 RRVDDLAAELDASQKECRNYSTELFRLKGAY  540 (558)
Q Consensus       510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l  540 (558)
                      ..+..|++.+...+-.+.+++..+.......
T Consensus       161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn  191 (207)
T PF05010_consen  161 AELLALQASLKKEEMKVQSLEESLEQKTKEN  191 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.48  E-value=4.6  Score=43.56  Aligned_cols=79  Identities=10%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhHHhhhhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHH
Q psy8739         472 DLQRQLSKANADAQLWRTKYESEGVARAEEL-EESKSEERRVDDLAAELDASQKECRNYST---ELFRLKGAYEEAQEQL  547 (558)
Q Consensus       472 ~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~-ee~k~~~~~~~~l~~~~~~~~~~~~~~e~---e~~~l~~~l~e~~~~~  547 (558)
                      .+-.....++.+|..+..+++.-.....+.+ .++++. .....++.-+..+-..+..+-.   +.-.+.+.+.+|+++|
T Consensus       509 KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkD-e~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI  587 (594)
T PF05667_consen  509 KILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKD-EAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQI  587 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3334444566677777777765443333322 444433 3344444444444444444443   3334666667777776


Q ss_pred             HHHH
Q psy8739         548 EAVR  551 (558)
Q Consensus       548 ~~l~  551 (558)
                      +...
T Consensus       588 ~~e~  591 (594)
T PF05667_consen  588 DTES  591 (594)
T ss_pred             HHHh
Confidence            6543

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.45  E-value=6.7  Score=45.28  Aligned_cols=8  Identities=25%  Similarity=0.655  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q psy8739         287 MSKLRRDL  294 (558)
Q Consensus       287 l~~lk~~l  294 (558)
                      +..+...+
T Consensus       483 l~~l~~~i  490 (908)
T COG0419         483 LEELEEEL  490 (908)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=95.27  E-value=0.38  Score=34.38  Aligned_cols=60  Identities=10%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         430 DTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRT  489 (558)
Q Consensus       430 el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~  489 (558)
                      +|++.|+.+.+++..+...+..+...+-.+...+.+.......|...|..+..++..++.
T Consensus         1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            578889999999999999999999999999999999999889998888888888777653

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.27  E-value=2.3  Score=38.76  Aligned_cols=13  Identities=38%  Similarity=0.772  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q psy8739         284 EAEMSKLRRDLEE  296 (558)
Q Consensus       284 e~el~~lk~~le~  296 (558)
                      .+++..++..+++
T Consensus        18 ~n~l~elq~~l~~   30 (194)
T PF15619_consen   18 QNELAELQRKLQE   30 (194)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.09  E-value=3.4  Score=39.74  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         232 EELEEEVEAERQSRAKAEKQRADLARELEELGERLE  267 (558)
Q Consensus       232 ~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~  267 (558)
                      ..+..++...+..+..+-.....|-..+..+....+
T Consensus        65 deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333333333333445555555555444

>KOG0978|consensus

Probab=95.07  E-value=6.3  Score=42.77  Aligned_cols=47  Identities=15%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             HHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhh
Q psy8739          30 DFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL   76 (558)
Q Consensus        30 ~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~   76 (558)
                      .+.....+|+..+..+...+-.....+..+........+.+.++...
T Consensus        52 ~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~   98 (698)
T KOG0978|consen   52 ELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQ   98 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Confidence            34444444444444444444444444444443333444444333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.93  E-value=4.9  Score=40.79  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy8739         427 QLEDTKRLADEEGRERATLLGKFRNLE  453 (558)
Q Consensus       427 ~l~el~~~le~~~~~~~~l~~~~~~le  453 (558)
                      .+..-+..++++...-..+...+.+++
T Consensus       218 ~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         218 ELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>KOG0999|consensus

Probab=94.86  E-value=5.6  Score=41.14  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         361 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ---VSQLSKIKISLTTQLEDTKRLADE  437 (558)
Q Consensus       361 ~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~---~~~~~~~~~~l~~~l~el~~~le~  437 (558)
                      .+-.+..+..+|.++..       .-..+-+.+..++.++-.|+.++..++..   +..+...++.+...+.-+..++++
T Consensus       147 ~E~qR~rlr~elKe~Kf-------RE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee  219 (772)
T KOG0999|consen  147 VEDQRRRLRDELKEYKF-------REARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE  219 (772)
T ss_pred             hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444433       23445555666666666666666655433   334455566666666666666666


Q ss_pred             HHHHHHHHHHH
Q psy8739         438 EGRERATLLGK  448 (558)
Q Consensus       438 ~~~~~~~l~~~  448 (558)
                      ..+-+..+..+
T Consensus       220 ~~~Lk~IAekQ  230 (772)
T KOG0999|consen  220 AIRLKEIAEKQ  230 (772)
T ss_pred             HHHHHHHHHHH
Confidence            66555554433

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=94.83  E-value=5.2  Score=40.57  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         188 NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE  241 (558)
Q Consensus       188 ~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~  241 (558)
                      .+...++.+..++.-+...+..+...+.....++-.++++....-.|++..-.+
T Consensus       384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~e  437 (527)
T PF15066_consen  384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTE  437 (527)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            344555556666666666666666666666666666666666665565554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.82  E-value=2.2  Score=36.28  Aligned_cols=48  Identities=23%  Similarity=0.165  Sum_probs=23.9

Q ss_pred             HHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhhhh
Q psy8739          34 AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEES   81 (558)
Q Consensus        34 ~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~e~   81 (558)
                      .+..+..++..+.....++...+..+............+++..|+.+.
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El   51 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL   51 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555554444444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.53  E-value=5.4  Score=39.39  Aligned_cols=81  Identities=21%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8739         187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAE----RQSRAKAEKQRADLARELEEL  262 (558)
Q Consensus       187 ~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~----~~~~~~~~~~~~~l~~el~~l  262 (558)
                      .....+.+...-+..+...++..+.........++.-.+.|+.....+.++....    ...|..   -...+...|.++
T Consensus        43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e---l~~kFq~~L~dI  119 (309)
T PF09728_consen   43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE---LSEKFQATLKDI  119 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            3333334444444444455555554444445555555555555554444332111    111111   134555666666


Q ss_pred             HHHHHhhc
Q psy8739         263 GERLEEAG  270 (558)
Q Consensus       263 ~~~l~~~~  270 (558)
                      ...+++..
T Consensus       120 q~~~ee~~  127 (309)
T PF09728_consen  120 QAQMEEQS  127 (309)
T ss_pred             HHHHHhcc
Confidence            66666533

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0964|consensus

Probab=94.49  E-value=10  Score=42.34  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=14.1

Q ss_pred             HHHHhhHHhHhhhHHHHHhhhhhhhhhh
Q psy8739          57 SQLSKIKISLTTQLEDTKRLADEESSGW   84 (558)
Q Consensus        57 ~~l~k~~~~l~~ql~el~~~~e~e~~~~   84 (558)
                      ....+.+..+.-++.+++....-....+
T Consensus       296 t~~~k~kt~lel~~kdlq~~i~~n~q~r  323 (1200)
T KOG0964|consen  296 TKISKKKTKLELKIKDLQDQITGNEQQR  323 (1200)
T ss_pred             HHHHHHhhhhhhhhHHHHHHhhhhhhhh
Confidence            3344445555555555555555544443

>KOG0946|consensus

Probab=94.48  E-value=9  Score=41.77  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRAD  254 (558)
Q Consensus       175 l~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~  254 (558)
                      +..+..+...+......+...+.+...-+..++....+.......+--... .+.++-++...+............+...
T Consensus       739 l~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~-~qeqv~El~~~l~e~~~~l~~~q~e~~~  817 (970)
T KOG0946|consen  739 LNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLG-DQEQVIELLKNLSEESTRLQELQSELTQ  817 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhh-hHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            333333444444444445555555555555555443322211111111111 1223333333344444445555556666


Q ss_pred             HHHHHHHHHHHHHh
Q psy8739         255 LARELEELGERLEE  268 (558)
Q Consensus       255 l~~el~~l~~~l~~  268 (558)
                      ++.++..+......
T Consensus       818 ~keq~~t~~~~tsa  831 (970)
T KOG0946|consen  818 LKEQIQTLLERTSA  831 (970)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666665554443

>PRK11281 hypothetical protein; Provisional

Probab=94.36  E-value=13  Score=43.27  Aligned_cols=46  Identities=9%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         510 RRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK  555 (558)
Q Consensus       510 ~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~  555 (558)
                      ..-..+...+......++.+..+....++.++.+......++.+..
T Consensus       285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~  330 (1113)
T PRK11281        285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQIS  330 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777777777777777777777776665544

>KOG1029|consensus

Probab=94.26  E-value=9.6  Score=41.25  Aligned_cols=16  Identities=44%  Similarity=0.526  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHhhh
Q psy8739         364 IAKQLQHQLNEVQGKL  379 (558)
Q Consensus       364 ~~~~le~~l~el~~~l  379 (558)
                      .+..+...|.+++..+
T Consensus       487 ei~qlqarikE~q~kl  502 (1118)
T KOG1029|consen  487 EIDQLQARIKELQEKL  502 (1118)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444333

>KOG0946|consensus

Probab=94.25  E-value=10  Score=41.42  Aligned_cols=19  Identities=58%  Similarity=0.534  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy8739         223 QIKELQARIEELEEEVEAE  241 (558)
Q Consensus       223 ~~~~lq~~i~~l~~el~~~  241 (558)
                      ..+.++...++|.+++...
T Consensus       679 ~~~~l~~e~eeL~~~vq~~  697 (970)
T KOG0946|consen  679 MEKELQVENEELEEEVQDF  697 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.25  E-value=3.5  Score=38.68  Aligned_cols=55  Identities=24%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q psy8739         162 GDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGL  216 (558)
Q Consensus       162 ~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~  216 (558)
                      ..+++.+.++..++..-..+|.-+.+.....-..+.+++.++..++..++..+..
T Consensus        77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888888888887777788888888888888888888888888888776544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.18  E-value=5.9  Score=38.47  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         379 LDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE  438 (558)
Q Consensus       379 l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~  438 (558)
                      +.++...+..+...+.+-..+......++..+-..+..+....+.+..+-.++...+...
T Consensus       208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s  267 (306)
T PF04849_consen  208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS  267 (306)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333333334443333333333333333333333333333343444444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.61  E-value=3.6  Score=34.12  Aligned_cols=42  Identities=17%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       451 ~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .++.++..++..|+-.-.-..+-...+..+..++.++|.-|.
T Consensus        72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333334445555666666665554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.54  E-value=7  Score=37.14  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy8739         335 HERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDE  381 (558)
Q Consensus       335 ~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e  381 (558)
                      ..+..++.+++.|..+++.+.....+..+++..+...+..++..+..
T Consensus        45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~   91 (265)
T COG3883          45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE   91 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444433

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.44  E-value=3.3  Score=33.08  Aligned_cols=30  Identities=0%  Similarity=0.179  Sum_probs=14.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8739         311 KHNDAVSEMGEQIDQLNKLKTKAEHERNAA  340 (558)
Q Consensus       311 ~~~~~i~~L~~~le~~~~~k~~le~~~~~l  340 (558)
                      .++..+..|+..++....+...+.+++..|
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L   42 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQL   42 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence            344455555555555444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.34  E-value=13  Score=39.65  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=22.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy8739         502 LEESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ  544 (558)
Q Consensus       502 ~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~  544 (558)
                      ++..+..+..+.....++..++++......-|..+-.++.+..
T Consensus       340 ~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~  382 (498)
T TIGR03007       340 IERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE  382 (498)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334433344455555555555555555555555555555543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.09  E-value=6.1  Score=37.01  Aligned_cols=9  Identities=33%  Similarity=0.110  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q psy8739         396 LSIENSDLL  404 (558)
Q Consensus       396 le~e~~~l~  404 (558)
                      +..++.-|+
T Consensus        86 ~~eey~~Lk   94 (230)
T PF10146_consen   86 LYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHH
Confidence            333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.84  E-value=15  Score=41.50  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHH
Q psy8739         427 QLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKA-DLQRQLSKANADAQLWRTKYESEGVARAEELEES  505 (558)
Q Consensus       427 ~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~-~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~  505 (558)
                      .+.++..++.........+...+..-.-.+..++.++.++..... ++...+..+..++...+.+..    .+...+...
T Consensus       289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~----~L~~~l~~~  364 (754)
T TIGR01005       289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARES----QLVSDVNQL  364 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            344444444444333334444443333344444444444433321 122222233333333333222    222333334


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy8739         506 KSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEA  543 (558)
Q Consensus       506 k~~~~~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~  543 (558)
                      +..+..+.....++..++++......-|..+-.++.+.
T Consensus       365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~  402 (754)
T TIGR01005       365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA  402 (754)
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333444444445555555555555555555444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.77  E-value=4.2  Score=32.49  Aligned_cols=59  Identities=24%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         431 TKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRT  489 (558)
Q Consensus       431 l~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~  489 (558)
                      |...+..+...+.+....+..++..+..+...++...-++..++..+.+...+.+.+.-
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel  100 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILEL  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            33333334444445555555556666666666666655665666655555555544433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.61  E-value=5.2  Score=33.19  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=11.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHH
Q psy8739         191 ELEQTIQRKDKEIASLTAKLEDEQG  215 (558)
Q Consensus       191 ~le~~~~~l~~el~~l~~~le~~~~  215 (558)
                      .+...+++++.|+..++.++.....
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~   44 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEA   44 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0995|consensus

Probab=92.61  E-value=15  Score=38.53  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=11.2

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHH
Q psy8739         446 LGKFRNLEHDIDNIREQLEEEAE  468 (558)
Q Consensus       446 ~~~~~~le~e~~~l~~~lee~~~  468 (558)
                      ...+...+-+++.+....++...
T Consensus       516 ~~~v~s~e~el~~~~~~~~eer~  538 (581)
T KOG0995|consen  516 EELVKSIELELDRMVATGEEERQ  538 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555554443

>KOG0994|consensus

Probab=92.47  E-value=23  Score=40.33  Aligned_cols=18  Identities=28%  Similarity=0.309  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8739         419 KIKISLTTQLEDTKRLAD  436 (558)
Q Consensus       419 ~~~~~l~~~l~el~~~le  436 (558)
                      +....+..++.+|...++
T Consensus      1612 ~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1612 KLATSATQQLGELETRME 1629 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.19  E-value=10  Score=35.66  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      +..+...+-..++.+.+.+..+...+..-+..+.++..++.....       .+..++.++..++..|+
T Consensus        65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELE  126 (307)
T PF10481_consen   65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELE  126 (307)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            333444444455555555666666665556666666555554433       44445555555555554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.19  E-value=24  Score=39.86  Aligned_cols=23  Identities=9%  Similarity=0.056  Sum_probs=8.8

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHH
Q psy8739         526 CRNYSTELFRLKGAYEEAQEQLE  548 (558)
Q Consensus       526 ~~~~e~e~~~l~~~l~e~~~~~~  548 (558)
                      ...+..++...+.-|..+..+++
T Consensus       378 ~~~L~Re~~~~~~~Y~~ll~r~~  400 (754)
T TIGR01005       378 LDALQRDAAAKRQLYESYLTNYR  400 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.89  E-value=14  Score=36.36  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=24.5

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         445 LLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLW  487 (558)
Q Consensus       445 l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~  487 (558)
                      +..+...++.++..+-...+++...++.+.....+++.++..+
T Consensus       138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~  180 (319)
T PF09789_consen  138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI  180 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555666666666666666666666543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.98  E-value=29  Score=38.42  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8739         219 KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGG  271 (558)
Q Consensus       219 ~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~  271 (558)
                      .+...+..+...+..+..+++........+......+...+.++...+...+|
T Consensus       206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG  258 (650)
T TIGR03185       206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG  258 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445555666666666666666666666666677777777777777776554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.83  E-value=14  Score=34.52  Aligned_cols=104  Identities=20%  Similarity=0.358  Sum_probs=46.7

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy8739         450 RNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNY  529 (558)
Q Consensus       450 ~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~  529 (558)
                      +.++..+..+...+.........+...+..+...+..|..+...-+..-  .-+-++.-+.....+...+..++..+..+
T Consensus        33 rd~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~  110 (221)
T PF04012_consen   33 RDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQLDQA  110 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444455555555555555543211111  11112222234444444455555555555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         530 STELFRLKGAYEEAQEQLEAVRRENK  555 (558)
Q Consensus       530 e~e~~~l~~~l~e~~~~~~~l~~~~~  555 (558)
                      ...+..++..+..++..+..++....
T Consensus       111 ~~~~~~l~~~l~~l~~kl~e~k~k~~  136 (221)
T PF04012_consen  111 EAQVEKLKEQLEELEAKLEELKSKRE  136 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555554443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=90.27  E-value=15  Score=34.76  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         400 NSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSK  479 (558)
Q Consensus       400 ~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~  479 (558)
                      |.+|+..+.+....+.+-...+..+..+|.-++..+-++..-+-.++-.++..+.+|..|+.-++-.......-.+-|.+
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK  149 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK  149 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence            34444444444444444445555566677777777777777777888888888888888888888777766666667777


Q ss_pred             HHHHHHHHHHhhH
Q psy8739         480 ANADAQLWRTKYE  492 (558)
Q Consensus       480 l~~e~~~~k~kle  492 (558)
                      .-.+|..-..+|+
T Consensus       150 YFvDINiQN~KLE  162 (305)
T PF15290_consen  150 YFVDINIQNKKLE  162 (305)
T ss_pred             HHhhhhhhHhHHH
Confidence            7777777777776

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.65  E-value=21  Score=34.75  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Q psy8739         452 LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNYST  531 (558)
Q Consensus       452 le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~e~  531 (558)
                      +...+..|...+..-.......+..|..+-.++..+..++.    .+..+-+++...+......+..   +..++.++..
T Consensus       211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k----~~~~EnEeL~q~L~~ske~Q~~---L~aEL~elqd  283 (306)
T PF04849_consen  211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK----QLAAENEELQQHLQASKESQRQ---LQAELQELQD  283 (306)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            33444444444444444444444555555555555555554    3333444444333222222222   3555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy8739         532 ELFRLKGAYEEAQEQLEAVRR  552 (558)
Q Consensus       532 e~~~l~~~l~e~~~~~~~l~~  552 (558)
                      .|..+-.-+.+..+.+..+++
T Consensus       284 kY~E~~~mL~EaQEElk~lR~  304 (306)
T PF04849_consen  284 KYAECMAMLHEAQEELKTLRK  304 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            666666666666666665543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.61  E-value=21  Score=34.69  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhHHHhhHHHHHHHHHH
Q psy8739         204 ASLTAKLEDEQGLVGKNQKQIKELQ  228 (558)
Q Consensus       204 ~~l~~~le~~~~~~~~~~~~~~~lq  228 (558)
                      ..++..++.....+..+...++.+.
T Consensus        37 ~~Lk~El~~ek~~~~~L~~e~~~lr   61 (310)
T PF09755_consen   37 RVLKRELETEKARCKHLQEENRALR   61 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334333334444444444443

>KOG1899|consensus

Probab=89.60  E-value=31  Score=36.59  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy8739         386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR-LADEEGRERATLLGKFRNLEHDIDNIREQLE  464 (558)
Q Consensus       386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~-~le~~~~~~~~l~~~~~~le~e~~~l~~~le  464 (558)
                      +..++.++-.|-.++.+|+-.+-.++....+.+...+..+..+.++.. .+.+....+..+...++....++..|+.+..
T Consensus       169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~  248 (861)
T KOG1899|consen  169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRS  248 (861)
T ss_pred             hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHh
Confidence            344555555555566666655555555554555555555666655553 2555556666666666666777776666665


Q ss_pred             HHH
Q psy8739         465 EEA  467 (558)
Q Consensus       465 e~~  467 (558)
                      +-.
T Consensus       249 eK~  251 (861)
T KOG1899|consen  249 EKN  251 (861)
T ss_pred             hhh
Confidence            443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=89.56  E-value=23  Score=35.13  Aligned_cols=90  Identities=19%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739         316 VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK  395 (558)
Q Consensus       316 i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~  395 (558)
                      +..++.+|...+..+..++.++.....++......-+........+.+...+....+..+..+..+.+..+..+-.+...
T Consensus        83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q  162 (499)
T COG4372          83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ  162 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443333333333333333333333333333333444444444444444444444444444


Q ss_pred             HHHHHHHHHH
Q psy8739         396 LSIENSDLLR  405 (558)
Q Consensus       396 le~e~~~l~~  405 (558)
                      +..+...+..
T Consensus       163 l~aq~qsl~a  172 (499)
T COG4372         163 LEAQAQSLQA  172 (499)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.32  E-value=14  Score=32.19  Aligned_cols=51  Identities=14%  Similarity=0.196  Sum_probs=22.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         383 NRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR  433 (558)
Q Consensus       383 ~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~  433 (558)
                      ......+...+.++..++..+...+..+...+..+.+....+......+..
T Consensus        51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~  101 (151)
T PF11559_consen   51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK  101 (151)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555544444444444444443333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0963|consensus

Probab=88.93  E-value=35  Score=36.32  Aligned_cols=139  Identities=18%  Similarity=0.262  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         173 GDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQR  252 (558)
Q Consensus       173 ~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~  252 (558)
                      ......++++..+.+....+.......+.++.++++.++.+...          ..+.|.-+..+|+......-.+++++
T Consensus       189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~----------k~aev~lim~eLe~aq~ri~~lE~e~  258 (629)
T KOG0963|consen  189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAA----------KAAEVSLIMTELEDAQQRIVFLEREV  258 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334555566666666666666666666666666665444322          23334444444544444444445555


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8739         253 ADLARELEELGERLEEAGGATSAQIELNKK-REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQ  325 (558)
Q Consensus       253 ~~l~~el~~l~~~l~~~~~~~~~~~e~~~~-~e~el~~lk~~le~~~~~~~~~~~~lr~~~~~~i~~L~~~le~  325 (558)
                      ..|..++....+...-..+..++.....-. .+.++..|-.+++....++..+++    .|..+|..|..++..
T Consensus       259 e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e----~~~~qI~~le~~l~~  328 (629)
T KOG0963|consen  259 EQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE----KHKAQISALEKELKA  328 (629)
T ss_pred             HHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            555555554444333322222222222111 256666676666666555444333    344455555555543

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=88.46  E-value=25  Score=33.95  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy8739         473 LQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       473 l~~~l~~l~~e~~~~k~kl  491 (558)
                      +...+...+..+.+++.-+
T Consensus       183 i~~~L~~~~~kL~Dl~~~l  201 (264)
T PF06008_consen  183 IRDDLNDYNAKLQDLRDLL  201 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.28  E-value=21  Score=32.85  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy8739         315 AVSEMGEQIDQLNKLKTKAEHERNAAHNETNNT  347 (558)
Q Consensus       315 ~i~~L~~~le~~~~~k~~le~~~~~le~e~~~l  347 (558)
                      -|..|..++..+.+.-...++....+..+...+
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L   60 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRL   60 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555544443333344444444443333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.26  E-value=29  Score=34.60  Aligned_cols=40  Identities=13%  Similarity=0.210  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy8739         422 ISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIRE  461 (558)
Q Consensus       422 ~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~  461 (558)
                      ..+.....-+...+..+......+......+..++..++.
T Consensus       159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~  198 (325)
T PF08317_consen  159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ  198 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444443333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=87.86  E-value=31  Score=34.36  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy8739         363 KIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLL  404 (558)
Q Consensus       363 ~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~  404 (558)
                      .....+..+..+++..+..+-..+..+..+...+...-..|.
T Consensus       137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444433344444444444444444444

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=87.67  E-value=8.4  Score=27.64  Aligned_cols=20  Identities=10%  Similarity=0.099  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q psy8739         320 GEQIDQLNKLKTKAEHERNA  339 (558)
Q Consensus       320 ~~~le~~~~~k~~le~~~~~  339 (558)
                      ++.|+...+.+..+..++..
T Consensus         3 QsaL~~EirakQ~~~eEL~k   22 (61)
T PF08826_consen    3 QSALEAEIRAKQAIQEELTK   22 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHH
Confidence            33444444444433333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=87.46  E-value=28  Score=33.52  Aligned_cols=118  Identities=13%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         371 QLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFR  450 (558)
Q Consensus       371 ~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~  450 (558)
                      ....+....+........+...+..+...+..+..++..+...  ...-....+...+.+.+.-+.++...  ++.....
T Consensus        74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~--~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~  149 (264)
T PF06008_consen   74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNEN--GDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQ  149 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--cCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHH
Confidence            3333333333333344444455555555555555444444330  00112233444444444444444322  2444455


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhH
Q psy8739         451 NLEHDIDNIREQLEEEAEGKADL----QRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       451 ~le~e~~~l~~~lee~~~~~~~l----~~~l~~l~~e~~~~k~kle  492 (558)
                      .++.++.....-+..........    ......+...+..+..++.
T Consensus       150 ~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~  195 (264)
T PF06008_consen  150 NAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQ  195 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            55555555555544444433222    2333344444455544443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=87.07  E-value=46  Score=35.49  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy8739         511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAV  550 (558)
Q Consensus       511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~~~~~~l  550 (558)
                      .+..-...+...+.+...+..++...+..|..+..+++..
T Consensus       342 ~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea  381 (498)
T TIGR03007       342 RLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA  381 (498)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444555555555555555555555555543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4593|consensus

Probab=86.52  E-value=52  Score=35.61  Aligned_cols=17  Identities=6%  Similarity=-0.034  Sum_probs=7.7

Q ss_pred             HHHHhHHHHHHHHHHHH
Q psy8739         338 NAAHNETNNTRAAADQL  354 (558)
Q Consensus       338 ~~le~e~~~l~~~le~~  354 (558)
                      ..++-+.-++.+.+...
T Consensus       302 ~~LELeN~~l~tkL~rw  318 (716)
T KOG4593|consen  302 LGLELENEDLLTKLQRW  318 (716)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            34444444444444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.25  E-value=30  Score=32.51  Aligned_cols=67  Identities=13%  Similarity=0.293  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ..-|.++....+.+...+......++.+..++..|...+......+......+..+-.++.-++...
T Consensus        31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i   97 (230)
T PF10146_consen   31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI   97 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666667777777777776666666666666555555555444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.09  E-value=24  Score=32.23  Aligned_cols=68  Identities=19%  Similarity=0.356  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .....+++..+++....+..+...+..++.++..++..+..+....+.|.....++-.++..++.+++
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~  201 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD  201 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            33444555555555555666666666666666666666666666666666555555555555555554

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=85.81  E-value=1.8  Score=42.24  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         402 DLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD  436 (558)
Q Consensus       402 ~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le  436 (558)
                      .|+..+..+...+..++.......-.|.+|+.++.
T Consensus       116 ~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~  150 (326)
T PF04582_consen  116 DLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK  150 (326)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence            33333333333333333333333444444444333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=85.69  E-value=45  Score=34.13  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         415 SQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQL  477 (558)
Q Consensus       415 ~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l  477 (558)
                      .+..+.++.++.-+...+..|.+-...+..++-+++.+...+..|+..|.-....++..-.+.
T Consensus       386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqc  448 (527)
T PF15066_consen  386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQC  448 (527)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            455677788888888899999999999999999999999999999999988776665544433

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=85.22  E-value=35  Score=32.48  Aligned_cols=79  Identities=23%  Similarity=0.386  Sum_probs=34.1

Q ss_pred             HHhhHHhhHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         167 QKRKIEGDLKLTQEAVAD-LERNKKELEQTIQRKDKEIASLTAKLEDEQGLV-GKNQKQIKELQARIEELEEEVEAERQS  244 (558)
Q Consensus       167 ~k~~le~el~~~~~~~~~-~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~-~~~~~~~~~lq~~i~~l~~el~~~~~~  244 (558)
                      ....++..+..+...+.. .......+...+..+...+..+...+......+ ..++.....+...+..|...++.++..
T Consensus        64 lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~  143 (247)
T PF06705_consen   64 LQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNE  143 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443321 222233333333333344444444433333322 234444455555666666666655544


Q ss_pred             H
Q psy8739         245 R  245 (558)
Q Consensus       245 ~  245 (558)
                      +
T Consensus       144 R  144 (247)
T PF06705_consen  144 R  144 (247)
T ss_pred             H
Confidence            4

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=84.95  E-value=13  Score=27.40  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         425 TTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD  483 (558)
Q Consensus       425 ~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e  483 (558)
                      +..+..|+..++.+.+.........+.+..+.+..-.++.........|...+..+..+
T Consensus         4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444454455444444444444444444444333333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.77  E-value=37  Score=32.36  Aligned_cols=49  Identities=18%  Similarity=0.352  Sum_probs=21.9

Q ss_pred             HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8739         331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL  379 (558)
Q Consensus       331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l  379 (558)
                      ..+..++..|...+.++...+.............++.++.+|..+...+
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=84.24  E-value=43  Score=32.65  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy8739         176 KLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQG-LVGKNQKQIKELQARIEELEEEVEAERQ-SRAKAEKQRA  253 (558)
Q Consensus       176 ~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~-~~~~~~~~~~~lq~~i~~l~~el~~~~~-~~~~~~~~~~  253 (558)
                      ..++..+......+..|...+..+......+....+.+.. ..+.+-+++..+...-..|-..++.+.. ....+.+...
T Consensus        37 ~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~  116 (310)
T PF09755_consen   37 RVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLN  116 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444555554444444444444444333222 2345555555555555555444444322 2234444555


Q ss_pred             HHHHHHHHHHHHH
Q psy8739         254 DLARELEELGERL  266 (558)
Q Consensus       254 ~l~~el~~l~~~l  266 (558)
                      .|..+..++...+
T Consensus       117 qLr~EK~~lE~~L  129 (310)
T PF09755_consen  117 QLRQEKVELENQL  129 (310)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555544444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=83.95  E-value=15  Score=27.15  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=11.1

Q ss_pred             HHHHHHhhhHHHhhhHHHHHHHHHHHHHHH
Q psy8739         371 QLNEVQGKLDETNRSLNDFDAAKKKLSIEN  400 (558)
Q Consensus       371 ~l~el~~~l~e~~~~~~~l~~~~~~le~e~  400 (558)
                      .+..|+..++.+.+.+.......+.+..+.
T Consensus         6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER   35 (69)
T PF14197_consen    6 EIATLRNRLDSLTRKNSVHEIENKRLRRER   35 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=83.85  E-value=24  Score=29.52  Aligned_cols=31  Identities=6%  Similarity=0.254  Sum_probs=16.6

Q ss_pred             hhHHHHHhhHHhhHHHHHHHHHHHHHHHHHH
Q psy8739         162 GDVEKQKRKIEGDLKLTQEAVADLERNKKEL  192 (558)
Q Consensus       162 ~~le~~k~~le~el~~~~~~~~~~~~~~~~l  192 (558)
                      ..+..+|+.|...+..+-..+++...-....
T Consensus        57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i   87 (126)
T PF07889_consen   57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQI   87 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3345666666666666555555444433333

The region featured in this family is approximately 100 amino acids long.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.36  E-value=27  Score=32.15  Aligned_cols=12  Identities=25%  Similarity=0.376  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q psy8739         146 LEQENGGLKKDI  157 (558)
Q Consensus       146 l~~~~~~l~~~~  157 (558)
                      ++.++..++.++
T Consensus        98 le~el~~l~~~l  109 (206)
T PRK10884         98 LENQVKTLTDKL  109 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.20  E-value=1.2e+02  Score=36.93  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      ..++..+...+.........+...+..+..++..+...+.
T Consensus       881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~  920 (1353)
T TIGR02680       881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVG  920 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444554444444444555555555555544443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=83.04  E-value=38  Score=31.12  Aligned_cols=103  Identities=20%  Similarity=0.335  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK---ISLTTQLEDTKRLADEEGR  440 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~---~~l~~~l~el~~~le~~~~  440 (558)
                      -++.|..+|.+++...........++.....++..-+..+...+.++...+....+.+   ..+...+..+...+..+.-
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~  107 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW  107 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777766666666666666666666666666666666555554444332   2334445555555555555


Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHH
Q psy8739         441 ERATLLGKFRNLEHDIDNIREQLEEE  466 (558)
Q Consensus       441 ~~~~l~~~~~~le~e~~~l~~~lee~  466 (558)
                      ....+...+..++.+.+.|...++..
T Consensus       108 e~evL~qr~~kle~ErdeL~~kf~~~  133 (201)
T PF13851_consen  108 EHEVLEQRFEKLEQERDELYRKFESA  133 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555544433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.01  E-value=1.2e+02  Score=36.87  Aligned_cols=39  Identities=10%  Similarity=0.108  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         453 EHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       453 e~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ...+.....++++...........+..+..++.....++
T Consensus       874 ~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l  912 (1353)
T TIGR02680       874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRL  912 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.01  E-value=51  Score=32.52  Aligned_cols=13  Identities=31%  Similarity=0.261  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHhch
Q psy8739         440 RERATLLGKFRNL  452 (558)
Q Consensus       440 ~~~~~l~~~~~~l  452 (558)
                      ..++.+.....++
T Consensus       161 ~ERD~yk~K~~RL  173 (319)
T PF09789_consen  161 TERDAYKCKAHRL  173 (319)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=82.48  E-value=35  Score=30.33  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         358 KAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIE----NSDLLRQ---LEEAESQVSQLSKIKISLTTQLED  430 (558)
Q Consensus       358 ~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e----~~~l~~~---l~e~~~~~~~~~~~~~~l~~~l~e  430 (558)
                      ...++.+|.-|+.++.-++.-+......++.+-..--.+..+    ..++..+   ++-++..+..+.......+..|..
T Consensus        66 L~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~  145 (178)
T PF14073_consen   66 LSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKE  145 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666666666666666555554444433332222222    2222222   222333444444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhch
Q psy8739         431 TKRLADEEGRERATLLGKFRNL  452 (558)
Q Consensus       431 l~~~le~~~~~~~~l~~~~~~l  452 (558)
                      |...+-++...+.-++.....+
T Consensus       146 LE~KL~eEehqRKlvQdkAaqL  167 (178)
T PF14073_consen  146 LEEKLQEEEHQRKLVQDKAAQL  167 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.42  E-value=39  Score=30.79  Aligned_cols=8  Identities=25%  Similarity=0.476  Sum_probs=3.4

Q ss_pred             HHHHHHHH
Q psy8739         316 VSEMGEQI  323 (558)
Q Consensus       316 i~~L~~~l  323 (558)
                      |.-|..+|
T Consensus        12 IsLLKqQL   19 (202)
T PF06818_consen   12 ISLLKQQL   19 (202)
T ss_pred             HHHHHHHH
Confidence            44444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=82.27  E-value=8  Score=25.83  Aligned_cols=42  Identities=21%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         451 NLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       451 ~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .++.+++.|+..++.+......|......+..++..++.++.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            467888888888888888888888888888888887776653

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0249|consensus

Probab=81.97  E-value=82  Score=34.25  Aligned_cols=34  Identities=12%  Similarity=0.369  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy8739         511 RVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ  544 (558)
Q Consensus       511 ~~~~l~~~~~~~~~~~~~~e~e~~~l~~~l~e~~  544 (558)
                      .+..+...++.+......+...+..|+..++.+.
T Consensus       224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333444444444444444444444444443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=81.67  E-value=73  Score=33.44  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhH
Q psy8739         511 RVDDLAAELDASQKECRNYSTE  532 (558)
Q Consensus       511 ~~~~l~~~~~~~~~~~~~~e~e  532 (558)
                      .+..+..-++.++..++.++.+
T Consensus       469 nm~~v~~~v~~a~~~m~~l~~~  490 (570)
T COG4477         469 NMEAVSALVDIATEDMNTLEDE  490 (570)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666667777777766663

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.61  E-value=26  Score=32.01  Aligned_cols=60  Identities=27%  Similarity=0.318  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         351 ADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA  410 (558)
Q Consensus       351 le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~  410 (558)
                      ++.....+..+-+....++..+.+.+..+.......+.+....+++..+...|...++++
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            333333333333333334444444444333333333444444444444444444444443

>KOG0995|consensus

Probab=80.27  E-value=84  Score=33.28  Aligned_cols=61  Identities=21%  Similarity=0.410  Sum_probs=29.4

Q ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q psy8739         164 VEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARI  231 (558)
Q Consensus       164 le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i  231 (558)
                      +++.+..|..++...+.-+..+......++..+.++       ...++.....+..++..+..|...|
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l-------~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML-------KSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455566666655555555555555554444333       3333333333444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	558
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-42
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-30
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-28
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-28
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-26
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-16
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-06
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-06
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	1e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  161 bits (409), Expect = 3e-42
 Identities = 76/284 (26%), Positives = 138/284 (48%), Gaps = 27/284 (9%)

Query: 8    KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 67
            ++L+  L+E++ +++E         A KKK+  +  DL  QLEE E+   +L   K++  
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 68   TQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQDTVD 127
             +++  +    ++     ++  K + E   L+                        D   
Sbjct: 983  GKIKKME----DDILIMEDQNNKLTKERKLLEER--------------------VSDLTT 1018

Query: 128  RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLE---GDVEKQKRKIEGDLKLTQEAVAD 184
             L +EE+    L + K K E     L+  ++  E    ++EK KRK+EG+     E +A+
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 185  LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQS 244
            L+    EL+  + +K++E+ +  A+LEDE        K+I+EL++ I +L+E++E+E+ +
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 245  RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 288
            R KAEKQ+ DL+ ELE L   LE+    T+ Q EL      +  
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  124 bits (313), Expect = 6e-30
 Identities = 67/331 (20%), Positives = 144/331 (43%), Gaps = 8/331 (2%)

Query: 191  ELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAE- 249
              E+ +Q KD+E+     + +  +  + + +++  +L      L+E+++AE +  A+AE 
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 250  ------KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 303
                   ++ +L   L E+  R+EE    +       KK + +M  L   LEE       
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE-AARQ 972

Query: 304  TLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEK 363
             L   +   +  + +M + I  +     K   ER       ++      +   +     K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 364  IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKIS 423
            +  + +  ++E++ +L +  +S  + +  K+KL  E+SDL  Q+ E ++Q+++L      
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 424  LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANAD 483
               +L+      ++E  ++   L K R LE  I +++E LE E   +   ++Q    + +
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

Query: 484  AQLWRTKYESEGVARAEELEESKSEERRVDD 514
             +  +T+ E      A + E   S+ +  DD
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  119 bits (301), Expect = 2e-28
 Identities = 56/346 (16%), Positives = 127/346 (36%), Gaps = 9/346 (2%)

Query: 221  QKQIKELQARIEELEEEVEA---ERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI 277
            Q  ++            +           + E++      EL+   ER ++A        
Sbjct: 825  QYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELE 884

Query: 278  ELNKKREAEMSKLRRDLE-EANIQHE-----STLANLRKKHNDAVSEMGEQIDQLNKLKT 331
            + + +   E + L+  L+ E  +  E       LA  +++  + + EM  +I++  +   
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 332  KAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
            + + E+     +  +     ++    +   +        ++ +++  +       N    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

Query: 392  AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRN 451
             +K L    SDL   L E E +   L+K+K    + + + +    +E + R  L    R 
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 452  LEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERR 511
            LE +  ++ EQ+ E     A+L+ QL+K   + Q    + E E   +   L++ +  E  
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 512  VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNL 557
            + DL  +L++ +        +   L    E  + +LE         
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  118 bits (298), Expect = 4e-28
 Identities = 69/358 (19%), Positives = 157/358 (43%), Gaps = 29/358 (8%)

Query: 128  RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER 187
            R ++E  A+++  Q+ K+ +Q+     K++E     + ++K  ++  L+   E  A+ E 
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 188  NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
             +  L    Q  ++ +  + A++E+E+    + Q + K++Q ++ +LEE++E E  +R K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 248  AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 307
             + ++     +++++ +            I + + +  +++K R+ LEE      + LA 
Sbjct: 974  LQLEKVTADGKIKKMED-----------DILIMEDQNNKLTKERKLLEERVSDLTTNLA- 1021

Query: 308  LRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQ 367
                      E  E+   L KLK K E       +  +       +  + +   EKI ++
Sbjct: 1022 ----------EEEEKAKNLTKLKNKHE-------SMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 368  LQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQ 427
            L+ + +++  ++ E    + +  A   K   E    L +LE+  SQ +   K    L + 
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 428  LEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQ 485
            + D +   + E   R     + R+L  +++ ++ +LE+  +  A  Q        D  
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  112 bits (281), Expect = 5e-26
 Identities = 59/306 (19%), Positives = 132/306 (43%), Gaps = 4/306 (1%)

Query: 128  RLQQEEDARNQLFQQKKKLE---QENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVAD 184
             L++ E    QL ++K  L+   Q    L  + E++   +  +K+++E  L   +  + +
Sbjct: 879  ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938

Query: 185  LERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQS 244
             E   ++L+   ++  +++  L  +LE+E+    K Q +      +I+++E+++      
Sbjct: 939  EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998

Query: 245  RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST 304
              K  K+R  L   + +L   L E         +L  K E+ +S+L   L++     +  
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058

Query: 305  LANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKI 364
                RK   ++ S++ EQI +L     + + +      E     A  +    +K    K 
Sbjct: 1059 EKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 365  AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISL 424
             ++L+  ++++Q  L+    + N  +  K+ LS E   L  +LE+     +   +++ S 
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

Query: 425  TTQLED 430
                +D
Sbjct: 1178 YKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  100 bits (251), Expect = 2e-22
 Identities = 50/258 (19%), Positives = 111/258 (43%), Gaps = 18/258 (6%)

Query: 127  DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG----------DVEKQKRKIEGDLK 176
             R+++EE+   QL  +KKK++Q+   L++ +E+ E             + + +K+E D+ 
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993

Query: 177  LTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEE 236
            + ++    L + +K LE+ +      +A    K ++   L  K++  I EL+ R+++   
Sbjct: 994  IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK--- 1050

Query: 237  EVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 296
                E +SR + EK +  L  E  +L E++ E     +       K+E E+      LE+
Sbjct: 1051 ----EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 297  ANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAR 356
               Q  +      ++    +S++ E ++     + KAE ++     E    +   +    
Sbjct: 1107 ETSQK-NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

Query: 357  EKAATEKIAKQLQHQLNE 374
              A  +++        ++
Sbjct: 1166 TTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 9/208 (4%)

Query: 4    EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
            +        ++ +++  +       N     +K L    SDL   L E E +   L+K+K
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 64   ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
                + + + +    +E     +EL K   +     S   + +             L  +
Sbjct: 1035 NKHESMISELEVRLKKEEKS-RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 124  D-----TVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGD---VEKQKRKIEGDL 175
            +      + RL+ E   +N   ++ ++LE     L++D+E  +      EKQKR +  +L
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 176  KLTQEAVADLERNKKELEQTIQRKDKEI 203
            +  +  + D        ++      K+ 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 34/175 (19%), Positives = 65/175 (37%)

Query: 384  RSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERA 443
              +   D   ++          +L+E E + +QL + K  L  +L+    L  E    R 
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916

Query: 444  TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELE 503
             L  K + LE  +  +  ++EEE E    LQ +  K          + E E  AR +   
Sbjct: 917  RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 504  ESKSEERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 558
            E  + + ++  +  ++   + +    + E   L+    +    L     + KNL 
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 83.6 bits (207), Expect = 7e-17
 Identities = 30/179 (16%), Positives = 73/179 (40%), Gaps = 8/179 (4%)

Query: 127  DRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEG---DVEKQKRKIEGDLKLTQEAVA 183
             +L+ E  +  +  +    LE +   L++ I++       + ++   +E       E + 
Sbjct: 907  KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 184  DLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQ 243
                  +  E+  +     + SL  ++   +  + + Q + K ++   ++ + E E   Q
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---Q 1023

Query: 244  SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 302
              ++ ++Q   L  E EEL  R+ +   A      + KK   E  +L  DL +  ++++
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 80.2 bits (198), Expect = 8e-16
 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 5/203 (2%)

Query: 140  FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
             +        +  LK  +           ++    LK+   +V   ++    LE  I + 
Sbjct: 874  VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933

Query: 200  DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
             ++I     + +     +   +        ++    E +    +    A  +   L  E+
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993

Query: 260  EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319
             +L + L +         E   K + E  +L  +L+E N   ++    L ++ +D   E+
Sbjct: 994  AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053

Query: 320  GEQI-----DQLNKLKTKAEHER 337
             E +     ++  +L+     ER
Sbjct: 1054 TETMEKKLVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 41/252 (16%), Positives = 91/252 (36%), Gaps = 6/252 (2%)

Query: 128  RLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLER 187
            R Q   DA   L    +     N       E     ++K  R     +   +   A +  
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 188  NKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAK 247
                     +R+ K++      +E  + L    + +I +LQ +I+E  +E ++  +    
Sbjct: 894  QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953

Query: 248  AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 307
             E   +    +L    ERL  +              + E++KLR++L +     ++    
Sbjct: 954  LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT----QTEKKT 1009

Query: 308  LRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQ 367
            + +  +    E  + + +L +  T  + E+   +   ++      +   +K   E   KQ
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET--KQ 1067

Query: 368  LQHQLNEVQGKL 379
            L+  LN+ + + 
Sbjct: 1068 LELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 37/262 (14%), Positives = 95/262 (36%), Gaps = 20/262 (7%)

Query: 153  LKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED 212
            ++     L+  +     + +  + L +     ++++ +     +       A +  +   
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 213  EQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGA 272
             + +    ++++K+L    +     VE  ++     E +   L R+++E  +  +     
Sbjct: 898  RRMMA---KRELKKL----KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS---L 947

Query: 273  TSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTK 332
                  L      E  KLR D+E   +  E       K   + V  + E+I +L K   +
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEE-----AKNATNRVLSLQEEIAKLRKELHQ 1002

Query: 333  AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAA 392
             + E+       +  +   +QL  E    ++    L+ +  E+  ++ +  + +   +  
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEIT--ETM 1057

Query: 393  KKKLSIENSDLLRQLEEAESQV 414
            +KKL  E   L   L +   + 
Sbjct: 1058 EKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 40/259 (15%), Positives = 99/259 (38%), Gaps = 9/259 (3%)

Query: 187  RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
              +K  +          A L   L   +  +   + +   +Q  +      V   R  +A
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 247  KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 306
                Q        +   ++L+    +     +L+   E ++ +L+R ++E N +++S L 
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 307  NLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAK 366
             +        +E  +    + +L+  +E E   A N   + +    +L +E   T+   K
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLR-MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 367  QLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTT 426
             ++   ++ + + ++    L +       L  E  +L R++ +   ++++  + K+    
Sbjct: 1009 TIEEWADKYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLV--- 1062

Query: 427  QLEDTKRLADEEGRERATL 445
              E+TK+L  +   ER   
Sbjct: 1063 --EETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 37/208 (17%), Positives = 67/208 (32%), Gaps = 11/208 (5%)

Query: 354  LAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDL--------LR 405
            L R      K    L+   + +  K      +   +    K +               L+
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 406  QLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEE 465
            +L+     V +  K+ I L  ++   +R  DE+ +E  +LL K  NLE       E+L  
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 466  EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKE 525
            + E     + +   A       + +         +   E K+ E   D    E +    E
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 526  CRNYSTELFRLKGAYEEAQEQLEAVRRE 553
                  +   LK   EE   ++    +E
Sbjct: 1028 ---LKEQNTLLKTEKEELNRRIHDQAKE 1052

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 23/238 (9%)

Query: 325  QLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG---KLDE 381
             L + K +     + +     + R    ++   +     +  Q  ++    +    KL  
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 382  TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRE 441
              RS+  +      L  +   L R+++E   +   L +        LE T     E+ R 
Sbjct: 912  EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM----NNLEITYSTETEKLRS 967

Query: 442  RATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANA---DAQLWRTKYESEGVAR 498
                L        +  N    L+EE    A L+++L +        + W  KY+ E    
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEI---AKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 499  AEELEESKSE--------ERRVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLE 548
              EL+E  +          RR+ D A E+  + +  +    E  +L+    + + + +
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 56/212 (26%)

Query: 4    EKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIK 63
            +K+   L++++ ++Q K+DE N+           L I  S    +L     ++       
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR------ 973

Query: 64   ISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKSLDLDVLNFTTENSHSFSISLYSQ 123
                   E+  + A                    + SL                      
Sbjct: 974  -----MSEEEAKNATNR-----------------VLSLQ--------------------- 990

Query: 124  DTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVA 183
               + + +     +Q   +KK +E+     K + E L  ++++Q   ++      +E   
Sbjct: 991  ---EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK---TEKEELNR 1044

Query: 184  DLERNKKELEQTIQRK-DKEIASLTAKLEDEQ 214
             +    KE+ +T+++K  +E   L   L DE+
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDER 1076

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 5e-13
 Identities = 92/631 (14%), Positives = 203/631 (32%), Gaps = 139/631 (22%)

Query: 11  QHQLNEVQGKLDETNRS-LNDF-DAAKKKLSIEN-SDLLRQL---EEAE------SQVSQ 58
            H ++   G+     +  L+ F DA       ++  D+ + +   EE +        VS 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 59  LSKIKISLTTQLEDT-KRL---ADEESSGWV-EELTKGSIEAITLKSLDLDVLNFTTENS 113
             ++  +L ++ E+  ++        +  ++   +     +     S+   +     +  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRL 119

Query: 114 HSFSISLYSQDTVDRLQQEEDARNQLFQQKKKLEQEN------GGLKK-----------D 156
           ++    ++++  V RLQ     R  L + +     +N       G  K            
Sbjct: 120 YN-DNQVFAKYNVSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 157 IED-LEGDVE----KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLE 211
           ++  ++  +     K     E  L++ Q+ +  ++ N              I S+ A+L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 212 D-------EQGL-----VGKNQKQIK--ELQARI------EELEEEVEAERQSRAKAEKQ 251
                   E  L     V +N K      L  +I      +++ + + A   +    +  
Sbjct: 236 RLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 252 RADLA-RELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 310
              L   E++ L                L K  +     L R++   N +  S +A   +
Sbjct: 295 SMTLTPDEVKSL----------------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 311 KHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLA--REKAATEKIAKQL 368
                     +    +N  K     E +    E    R   D+L+     A    I   L
Sbjct: 339 DGLA----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTIL 391

Query: 369 QHQL------NEVQGKLDE-TNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKI- 420
              +      ++V   +++    SL +    +  +SI    +  +L+        L +  
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSI 449

Query: 421 ----KISLTTQLED-TKRLADE----------EGRERATLLGKFRNLEHDIDNIREQLEE 465
                I  T   +D      D+          +  E    +  FR +  D   + +++  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-- 507

Query: 466 EAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSE-ERRVDDLAAELDASQK 524
             +  A      S  N   QL    Y+         + ++  + ER V+ +   L   ++
Sbjct: 508 RHDSTAWNASG-SILNTLQQL--KFYK-------PYICDNDPKYERLVNAILDFLPKIEE 557

Query: 525 EC-RNYSTELFRL------KGAYEEAQEQLE 548
               +  T+L R+      +  +EEA +Q++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 84/280 (30%)

Query: 6   IAKQLQHQLNEVQG-------KLDET-NRSLNDFDAAK-----KKLSI--ENSD----LL 46
           IA+ ++  L            KL      SLN  + A+      +LS+   ++     LL
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 47  RQL------EEAESQVSQLSKIKISLTTQLEDTKRLADEESSGWVEELTKGSIEAITLKS 100
             +       +    V++L K              L ++      +E T      I++ S
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK------------YSLVEK----QPKEST------ISIPS 430

Query: 101 LDLDVLNFTTENS---HSFSISLY-----------SQDTVD--------------RLQQE 132
           + L+ L    EN    H   +  Y               +D                 + 
Sbjct: 431 IYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 133 EDARNQLF------QQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLE 186
                 +F      +QK + +         I +    ++  K  I  +    +  V  + 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 187 RNKKELEQTIQR-KDKEIASLTAKLEDEQGLVGKNQKQIK 225
               ++E+ +   K  ++  + A + +++ +  +  KQ++
Sbjct: 550 DFLPKIEENLICSKYTDLLRI-ALMAEDEAIFEEAHKQVQ 588

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 20/175 (11%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 140 FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
            Q K +L +    +         +++     +E   +   EA+    + +K++   +Q+ 
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 883

Query: 200 DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
           ++ +     KLE+             E    I  ++ +++       + +        +L
Sbjct: 884 NRILK----KLENWATTK-SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 938

Query: 260 EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 314
             +  +L E     +   EL ++++   ++    ++ +   +++TL    ++   
Sbjct: 939 LSILAQLTEL--NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 991

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 129 LQQEEDARNQL--FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLE 186
           LQ+      +L  +   K +   +      I  ++  ++  +        L  ++ +DL 
Sbjct: 880 LQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLL 939

Query: 187 RNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRA 246
               +L +       E+          +       +Q   +++  E  +  + AE +   
Sbjct: 940 SILAQLTELNYNGVPEL---------TERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 990

Query: 247 KAEK 250
           K E 
Sbjct: 991 KIED 994

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 22/196 (11%), Positives = 72/196 (36%), Gaps = 25/196 (12%)

Query: 140  FQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRK 199
              +++      G    +I+     +EK +++    L++  +    +    ++  + +++ 
Sbjct: 839  LIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL 898

Query: 200  DKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLAREL 259
            +    + +  L        +    I  +QA+++ LE     + + ++   +  +DL   L
Sbjct: 899  ENWATTKSVYLGSN-----ETGDSITAVQAKLKNLEAF---DGECQSLEGQSNSDLLSIL 950

Query: 260  EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEM 319
             +L E             EL ++++   ++    ++ +   +++TL    ++        
Sbjct: 951  AQLTELNYN------GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ------ 998

Query: 320  GEQIDQLNKLKTKAEH 335
                 ++  L     H
Sbjct: 999  -----KIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/222 (13%), Positives = 68/222 (30%), Gaps = 9/222 (4%)

Query: 219  KNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE 278
            +   + ++    IE ++  + A ++ +   +  +     ELE +   L+        +  
Sbjct: 786  QASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPF 845

Query: 279  LNKKRE--AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEH- 335
            +        E+      LE+A  +H   L    K+       + +    L KL+  A   
Sbjct: 846  VAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTK 905

Query: 336  ----ERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDA 391
                  N   +     +A    L       + +  Q    L  +  +L E N   N    
Sbjct: 906  SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN--YNGVPE 963

Query: 392  AKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 433
              ++     +     ++ +          ++    ++ED   
Sbjct: 964  LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 17/214 (7%)

Query: 175  LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEEL 234
            L    + V  +   + +LE+     +  +     KL D +  V   Q  + +    ++  
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGL----KKLRDTEAQVKDLQVSLAQKNRELDVK 1953

Query: 235  EEEVEAE----RQSRAKAEKQRADLARELEELGERLEEAGG-ATSAQIELNKKREAEMSK 289
             E+   +     Q +  AE ++ D      +L  R +E       A  +L K        
Sbjct: 1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAE--PTGP 2011

Query: 290  LRRDLEEANIQHESTLANLRKKHN------DAVSEMGEQIDQLNKLKTKAEHERNAAHNE 343
            LR ++E+             +          +++   E+   L +   + + E +   N+
Sbjct: 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071

Query: 344  TNNTRAAADQLAREKAATEKIAKQLQHQLNEVQG 377
             + + A  D L  E+   E+ ++    Q++ V G
Sbjct: 2072 VDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 39/227 (17%), Positives = 95/227 (41%), Gaps = 4/227 (1%)

Query: 166 KQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIK 225
             K+     L+L   A    E+ ++E +  +++  +E+    A L + Q ++ + ++Q++
Sbjct: 314 LAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLR 373

Query: 226 ELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 285
           +LQA  EELE+     +    + E+ +   A E ++L + +       S   +  + +++
Sbjct: 374 QLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDS 433

Query: 286 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKAEHERNAAHNETN 345
           E  +L+ ++E+A  + +   A L          + E+ D        ++    +   +  
Sbjct: 434 ETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLA 493

Query: 346 NTRAAADQLAREKAATEKIAKQLQHQLNEVQGKL----DETNRSLND 388
                      ++    +  ++L +QL  ++  L    DET  +  D
Sbjct: 494 RGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMD 540

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 14/104 (13%), Positives = 36/104 (34%)

Query: 136 RNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQT 195
            + L   + K++++   L+  +  +E    + K+ I+          +            
Sbjct: 26  ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLK 85

Query: 196 IQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVE 239
            ++  +EI    A +      +   Q+       +I  L+E+V 
Sbjct: 86  SRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 129

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 26/207 (12%), Positives = 63/207 (30%), Gaps = 17/207 (8%)

Query: 123 QDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGD-------- 174
           +D + R    ++  +    +            K        + +  R I  +        
Sbjct: 63  KDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122

Query: 175 -----LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQA 229
                 K     + +     K     + + D E   + A+   E   + +      + + 
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVE--QIAAQSPVELSRMFEEVSGSIQYKK 180

Query: 230 RIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN--KKREAEM 287
             EEL+E++E   +S  ++ K R  +  EL+       E           +  + R   +
Sbjct: 181 EYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVI 240

Query: 288 SKLRRDLEEANIQHESTLANLRKKHND 314
           +     L+    +  +    ++KK  +
Sbjct: 241 NNETEQLKAEEKKILNQFLKIKKKRKE 267

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 165 EKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQI 224
            ++        +L QEA   LER K   +   ++  KE+  L A     +          
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE----STGNAK 723

Query: 225 KELQARIEELEEEVEAE-RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR 283
            E ++R E    E E    Q++ KA+    +   ELE + +  E       AQ+EL   +
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783

Query: 284 EAEMSKLRRDLEEANIQHESTLA 306
             +++ +     +   +      
Sbjct: 784 AQQLANVEAKKFKEMTEALGPGT 806

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	558
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.83
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.79
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	98.27
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.69
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.3
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.27
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	97.22
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.08
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.0
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.0
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.98
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	96.87
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	96.84
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.69
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.31
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.12
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.92
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	95.84
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.76
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.62
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.26
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.23
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	95.14
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.73
3bas_A	89	Myosin heavy chain, striated muscle/general contro	93.52
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	93.37
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.64
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.59
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.39
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	92.19
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	91.89
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	91.66
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.47
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.34
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.0
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	90.99
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.92
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.47
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.31
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	89.84
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.82
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	88.94
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	88.49
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.0
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	87.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.77
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	86.39
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	84.83
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.1
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.35
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	82.08
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	81.8
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	80.67
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	80.55

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.83  E-value=9.1e-09  Score=118.51  Aligned_cols=136  Identities=17%  Similarity=0.254  Sum_probs=0.0

Q ss_pred             HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         333 AEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAES  412 (558)
Q Consensus       333 le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~  412 (558)
                      +.+.+..+...+.++...+.........+......++.++..++..+.+....+..+...+..++.++..+...+.+...
T Consensus      1030 lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~ 1109 (1184)
T 1i84_S         1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444455554444555555555666666666666666666666666666666666666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy8739         413 QVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAE  468 (558)
Q Consensus       413 ~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~  468 (558)
                      .+..+...+..+..++.++...+.+.......+......+..++..++..+++...
T Consensus      1110 ~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S         1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55566666666666666666666665444444555555555666666655555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.79  E-value=1.5e-08  Score=116.77  Aligned_cols=176  Identities=20%  Similarity=0.322  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q psy8739         317 SEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKL  396 (558)
Q Consensus       317 ~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~l  396 (558)
                      ..+..++.........+...+..++..+..+...+.........+.+.+..+...+..+...+......+..+......+
T Consensus       986 ~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~l 1065 (1184)
T 1i84_S          986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333443333333444445555555555555555555555555666666667777777777777666667776667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         397 SIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQ  476 (558)
Q Consensus       397 e~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~  476 (558)
                      +.++..+...+.++...+..+...+..++.++..+...++........+...+..++.++..+..++.+.......+...
T Consensus      1066 e~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q 1145 (1184)
T 1i84_S         1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777788888877777766667777777888888888888887776666666666


Q ss_pred             HHHHHHHHHHHHHhhH
Q psy8739         477 LSKANADAQLWRTKYE  492 (558)
Q Consensus       477 l~~l~~e~~~~k~kle  492 (558)
                      ...+..++..++..++
T Consensus      1146 ~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S         1146 KRDLSEELEALKTELE 1161 (1184)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777777775

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=98.27  E-value=0.00056  Score=58.00  Aligned_cols=118  Identities=26%  Similarity=0.378  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         175 LKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRAD  254 (558)
Q Consensus       175 l~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~  254 (558)
                      +..+...+.++...+..+...+..++.++..++..++.++..+......+.+++.+|..|..+++..+.....+..+++.
T Consensus        43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~  122 (168)
T 3o0z_A           43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE  122 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666777778888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Q psy8739         255 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE  302 (558)
Q Consensus       255 l~~el~~l~~~l~~~~~~~~~~~e~~~~~e~el~~lk~~le~~~~~~~  302 (558)
                      |...+..+......      ..++.    -.++..++..|+.....|.
T Consensus       123 L~Ekl~~lEKe~a~------~eid~----~~eLKalQ~~~eqE~~~H~  160 (168)
T 3o0z_A          123 AQDMLNHSEKEKNN------LEIDL----NYKLKSLQQRLEQEVNEHK  160 (168)
T ss_dssp             HHHHHHHHHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh------hhHHH----HHHHHHHHHHHHHHHHHHH
Confidence            99999999886544      22222    1457778888877665554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.69  E-value=0.019  Score=50.09  Aligned_cols=79  Identities=14%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         360 ATEKIAKQLQHQLNEVQGKLDETNR----SLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLA  435 (558)
Q Consensus       360 ~~e~~~~~le~~l~el~~~l~e~~~----~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~l  435 (558)
                      .+...+..+..++..++.++.....    .++.+...+..+...+..+...+-+++...+.+++..+.....+.++...+
T Consensus        60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl  139 (189)
T 2v71_A           60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL  139 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence            3333444444444444444433322    245555555556666666666666666666666666666666666666666


Q ss_pred             HHH
Q psy8739         436 DEE  438 (558)
Q Consensus       436 e~~  438 (558)
                      +..
T Consensus       140 n~a  142 (189)
T 2v71_A          140 NQA  142 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.30  E-value=0.064  Score=45.50  Aligned_cols=81  Identities=10%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         331 TKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA  410 (558)
Q Consensus       331 ~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~  410 (558)
                      +.+.+....++..+.+|...+..+..       .+..|+.++..|++.++...+.+......+..++..+..|...++.+
T Consensus        37 tEl~k~~~~~E~~~rELq~~~~~L~~-------~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           37 TEMSKSISQLESLNRELQERNRILEN-------SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555554444       44456666667777777777777666666666666666666655555


Q ss_pred             HHHHHHHH
Q psy8739         411 ESQVSQLS  418 (558)
Q Consensus       411 ~~~~~~~~  418 (558)
                      ......+.
T Consensus       110 k~~~~k~~  117 (168)
T 3o0z_A          110 KHNLEKVE  117 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.27  E-value=0.11  Score=48.54  Aligned_cols=7  Identities=14%  Similarity=-0.135  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q psy8739         396 LSIENSD  402 (558)
Q Consensus       396 le~e~~~  402 (558)
                      ++.++..
T Consensus        65 ~e~~i~~   71 (256)
T 3na7_A           65 NEQTLQD   71 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=97.22  E-value=0.0096  Score=45.85  Aligned_cols=83  Identities=24%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8739         121 YSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKD  200 (558)
Q Consensus       121 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~  200 (558)
                      .++.|++++..+.+++..|+.++..|+.++..+...-.      ......++..+.+++..++.+......+...+..+.
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~   83 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA   83 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999988865421      234455677777788777777777777776666666


Q ss_pred             HHHHHHHHH
Q psy8739         201 KEIASLTAK  209 (558)
Q Consensus       201 ~el~~l~~~  209 (558)
                      .++.+++.+
T Consensus        84 ~~~~~~k~K   92 (93)
T 3s4r_A           84 EDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            666666554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.08  E-value=0.16  Score=47.51  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=11.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         340 AHNETNNTRAAADQLAREKAATEKIAKQLQHQL  372 (558)
Q Consensus       340 le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l  372 (558)
                      ++..+..+...+..+.....++...+..++..+
T Consensus        37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i   69 (256)
T 3na7_A           37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL   69 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.00  E-value=0.13  Score=43.42  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQR  475 (558)
Q Consensus       396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~  475 (558)
                      ++..+......++.....+..+...+..+...+..+...-+.....-..+..+++.+...+...-...+...+....|+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444555555555555555555554444444444445555555555555555555555555666666


Q ss_pred             HHHHHHHHHHHHHHhhH
Q psy8739         476 QLSKANADAQLWRTKYE  492 (558)
Q Consensus       476 ~l~~l~~e~~~~k~kle  492 (558)
                      .++.+...+..++.++.
T Consensus       106 ~id~lEd~L~~~Kek~~  122 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYK  122 (155)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666665555553

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.00  E-value=0.11  Score=42.77  Aligned_cols=58  Identities=26%  Similarity=0.421  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy8739         410 AESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA  467 (558)
Q Consensus       410 ~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~  467 (558)
                      ....+..+......+...+.++...+++....+..+....+.++.++..|..++++..
T Consensus        67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555666777777777777777777777777777777777777777654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.98  E-value=0.066  Score=44.18  Aligned_cols=43  Identities=37%  Similarity=0.581  Sum_probs=34.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         118 ISLYSQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDL  160 (558)
Q Consensus       118 le~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~  160 (558)
                      |+..+..+..+++++++.+..|...+.+++.++.+++..++++
T Consensus        81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555677888888888888888888888888888888887654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.87  E-value=0.026  Score=46.63  Aligned_cols=96  Identities=13%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQ  474 (558)
Q Consensus       395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~  474 (558)
                      ....++.++...+..+...+..+......++..|.++.......   ...+...+..++.++..++..+.........|-
T Consensus        33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll  109 (129)
T 3tnu_B           33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQDMARLLREYQELM  109 (129)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555666666777666655432   334455555667777777666666655566666


Q ss_pred             HHHHHHHHHHHHHHHhhHh
Q psy8739         475 RQLSKANADAQLWRTKYES  493 (558)
Q Consensus       475 ~~l~~l~~e~~~~k~kle~  493 (558)
                      ...-.|+.+|+.|++-|++
T Consensus       110 nvKl~Ld~EIatYRkLLEg  128 (129)
T 3tnu_B          110 NTKLALDVEIATYRKLLEG  128 (129)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhHCc
Confidence            6667789999999988764

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.84  E-value=0.024  Score=47.02  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739         393 KKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD  472 (558)
Q Consensus       393 ~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~  472 (558)
                      +.....++.++...+..+...+..+......++..|.++.......   ...+...+..++.++..++..+.........
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~  109 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ---LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI  109 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555556666777777776665433   3345555566677777777766666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhHh
Q psy8739         473 LQRQLSKANADAQLWRTKYES  493 (558)
Q Consensus       473 l~~~l~~l~~e~~~~k~kle~  493 (558)
                      |-...-.|+.+|+.|++-|++
T Consensus       110 Ll~vKl~Ld~EIatYRkLLEG  130 (131)
T 3tnu_A          110 LLDVKTRLEQEIATYRRLLEG  130 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhHCc
Confidence            767667889999999988764

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.31  E-value=0.41  Score=40.35  Aligned_cols=75  Identities=17%  Similarity=0.233  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEE  438 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~  438 (558)
                      .+..|+..+..+...+..+...-......-..++.+|..|...+.++......+.+....++..|..+...+...
T Consensus        43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~  117 (155)
T 2efr_A           43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ  117 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444333333333333333333444456666666666666666666666677777777777666666544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.12  E-value=3.7  Score=51.59  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q psy8739         450 RNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECRNY  529 (558)
Q Consensus       450 ~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~~~  529 (558)
                      .-++.++..+...+..........+..+..++..+..++.+|+.    ...+-+.++   ..+...+..++.+.+-+..|
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~----~~~ek~~L~---~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT----LIRETEQIK---TESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence            44556777777777777777777777888888888888888862    222223333   46667788888899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q psy8739         530 STELFRLKGAYEEAQEQLEAVRR  552 (558)
Q Consensus       530 e~e~~~l~~~l~e~~~~~~~l~~  552 (558)
                      ..|..++...+..+..++..+.-
T Consensus      2083 ~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A         2083 NSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHhccH
Confidence            99999999999999988887653

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.92  E-value=0.12  Score=39.33  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=72.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHhHhHHHHHHHhHHHHHHHHHHHHhhHHhHhhhHHHHHhhhhh
Q psy8739           1 AATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADE   79 (558)
Q Consensus         1 ~~~e~~~~~le~~l~e~~~~~ee~~~~~~~~~~~~~kL~~e~~~l~~~l~e~e~~~~~l~k~~~~l~~ql~el~~~~e~   79 (558)
                      ++.+.....++..+..++..+......+.++.....+|..+..+|..++.+.+.....+...+..++.++.++...+++
T Consensus        10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e   88 (89)
T 3bas_A           10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE   88 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3567888899999999999999999999999999999999999999999999999999999999999999998776654

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=95.84  E-value=0.14  Score=38.71  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q psy8739         395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIR  460 (558)
Q Consensus       395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~  460 (558)
                      ++..++..+...+++....+..-...+..++..+.-++..+++..-.+..+..++.++..++.+|+
T Consensus        18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A           18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333334444434444433333333344455556666666666666666666666666666666654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.76  E-value=0.4  Score=36.55  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         361 TEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEE-AESQVSQLSKIKISLTTQLEDTKRLAD  436 (558)
Q Consensus       361 ~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e-~~~~~~~~~~~~~~l~~~l~el~~~le  436 (558)
                      ++.........+..|...+......+..+...+..++.++.+|...+.+ +...+....+....++.....|+.+|.
T Consensus        17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444556666666777777777777777777888888887776644 344445555555555555555555554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.62  E-value=0.36  Score=54.62  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         244 SRAKAEKQRADLARELEELGERL  266 (558)
Q Consensus       244 ~~~~~~~~~~~l~~el~~l~~~l  266 (558)
                      ....+++++..|+.+++++...+
T Consensus      1024 kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A         1024 LVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.26  E-value=0.71  Score=35.16  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         227 LQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEE  268 (558)
Q Consensus       227 lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~  268 (558)
                      +...+..|...+..++..+..++..+..++.++++|...|.+
T Consensus        24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe   65 (97)
T 2eqb_B           24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   65 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445555555555555444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.23  E-value=8.5  Score=48.47  Aligned_cols=36  Identities=11%  Similarity=0.201  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         456 IDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       456 ~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ...++.+++............+..|..+-..|....
T Consensus      2058 k~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A         2058 TEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence            333333333333334444445555555555555444

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=95.14  E-value=0.41  Score=36.09  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q psy8739         316 VSEMGEQIDQLNKLKTKAEHERNAAHNETNNTRAAADQLAREKAATEKIAKQLQHQLNEVQGKLDETNRSLNDFDAAKKK  395 (558)
Q Consensus       316 i~~L~~~le~~~~~k~~le~~~~~le~e~~~l~~~le~~~~~~~~~e~~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~  395 (558)
                      |.+|+.+++.+...++.+.-++..+...+.++...++.-..       .+..++..+..++..+++..-.+.+++.++..
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~-------~R~~~E~d~~~LrkdvD~a~l~r~dLE~kves   74 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-------QREEAENTLQSFRQDVDNASLARLDLERKVES   74 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34455555555444444444444444444444444443322       23344455555555555555555555555555


Q ss_pred             HHHHHHHH
Q psy8739         396 LSIENSDL  403 (558)
Q Consensus       396 le~e~~~l  403 (558)
                      |..++.-|
T Consensus        75 L~eEl~fL   82 (86)
T 3swk_A           75 LQEEIAFL   82 (86)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.73  E-value=2.7  Score=35.21  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy8739         448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEGVARAEELEESKSEERRVDDLAAELDASQKECR  527 (558)
Q Consensus       448 ~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~~~~~~~~ee~k~~~~~~~~l~~~~~~~~~~~~  527 (558)
                      .+..+..++..|...+.+....+...+.....++.++..+-..|++++..             .+.........++..+.
T Consensus        52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~-------------MVa~ar~~~~~~e~r~~  118 (154)
T 2ocy_A           52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN-------------MVADARKEKYAIEILNK  118 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence            34557888889999999999999999999999999999998888765432             22233444455555555


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy8739         528 NYSTELFRLKGAYEEAQEQLEAVRREN  554 (558)
Q Consensus       528 ~~e~e~~~l~~~l~e~~~~~~~l~~~~  554 (558)
                      .+...+......++.+..++..|+.-.
T Consensus       119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          119 RLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555666666655555443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=93.52  E-value=1.5  Score=33.22  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         365 AKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD  436 (558)
Q Consensus       365 ~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le  436 (558)
                      +..+...+..+...+......+..+......+..+...|..++.++...+..+...+..+...+.++...++
T Consensus        16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444455555555555555555555555555555555555566666666655543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=93.37  E-value=1.2  Score=32.43  Aligned_cols=62  Identities=21%  Similarity=0.316  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         427 QLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWR  488 (558)
Q Consensus       427 ~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k  488 (558)
                      .+.++++.++.+.+.+..+..++..+......+.+++.+.......|...+..+..++..++
T Consensus        11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq   72 (81)
T 1wt6_A           11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ   72 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999998888888887777777776654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.64  E-value=2.9  Score=32.52  Aligned_cols=40  Identities=10%  Similarity=0.117  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL  434 (558)
Q Consensus       395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~  434 (558)
                      .++.++..+...+.+....+....+.....+..+..|+..
T Consensus        55 ~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr   94 (101)
T 3u1c_A           55 VTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333334444444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.59  E-value=3.6  Score=33.59  Aligned_cols=86  Identities=20%  Similarity=0.163  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8739         122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDK  201 (558)
Q Consensus       122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~  201 (558)
                      +..++..+...+-....+...+..|+..|.+++..+.....++...-..++.++..++..+.........|-..+-.|+.
T Consensus        38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~  117 (129)
T 3tnu_B           38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDV  117 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555666666555555442221222222233334433333333333333333333344444


Q ss_pred             HHHHHH
Q psy8739         202 EIASLT  207 (558)
Q Consensus       202 el~~l~  207 (558)
                      ||..++
T Consensus       118 EIatYR  123 (129)
T 3tnu_B          118 EIATYR  123 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.39  E-value=4.3  Score=33.92  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         364 IAKQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR  433 (558)
Q Consensus       364 ~~~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~  433 (558)
                      .+..++.++.+......+..+....+...+.-++..+.......+.....+..+...+..+.+.+..+..
T Consensus        53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~  122 (147)
T 2b9c_A           53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED  122 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3444555555555555555555455444444455554444444444444444444444444444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.19  E-value=3.8  Score=33.55  Aligned_cols=86  Identities=16%  Similarity=0.100  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8739         122 SQDTVDRLQQEEDARNQLFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDK  201 (558)
Q Consensus       122 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~  201 (558)
                      +.+++..++..+-....+...+..|+..|.+++..+.....++...-..++.++..++..+.........|-..+-.|+.
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~  119 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQ  119 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555566666666666555542221222222233444444444433333333444444444444


Q ss_pred             HHHHHH
Q psy8739         202 EIASLT  207 (558)
Q Consensus       202 el~~l~  207 (558)
                      ||..++
T Consensus       120 EIatYR  125 (131)
T 3tnu_A          120 EIATYR  125 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=91.89  E-value=3  Score=31.13  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739         420 IKISLTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE  494 (558)
Q Consensus       420 ~~~~l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~  494 (558)
                      .+..++..+.++...+...   ...+...+..++.++..++..+.........|-.....++.+|+.|++-++++
T Consensus         9 ~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGE   80 (84)
T 1gk4_A            9 TNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE   80 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence            3344455555555444322   23444455555666666666666655556666666677899999999988753

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=91.66  E-value=3.5  Score=31.42  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         174 DLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRA  253 (558)
Q Consensus       174 el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~  253 (558)
                      ++..+.+.+...-.++..|+.....|+.++..++..-   .+   .   -...+...|.+|...++.....+..+.-+..
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~---~~---~---~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d   80 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG---KS---R---LGDLYEEEMRELRRQVDQLTNDKARVEVERD   80 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CC---C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777778888888888888888888877776431   11   1   1123566677777777766666666666666


Q ss_pred             HHHHHHHHHHHH
Q psy8739         254 DLARELEELGER  265 (558)
Q Consensus       254 ~l~~el~~l~~~  265 (558)
                      .|..++.+++..
T Consensus        81 nl~~~~~~~k~K   92 (93)
T 3s4r_A           81 NLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            666666666543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.47  E-value=1  Score=36.67  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         366 KQLQHQLNEVQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEA-ESQVSQLSKIKISLTTQLEDTKRLADE  437 (558)
Q Consensus       366 ~~le~~l~el~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~-~~~~~~~~~~~~~l~~~l~el~~~le~  437 (558)
                      ......+..|...+.+....+..+...+..++.++.+|...+.+- ...++...+....++.....+..++.+
T Consensus        42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e  114 (135)
T 2e7s_A           42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE  114 (135)
T ss_dssp             TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666777777777777888888888888888887776543 444455555555555555555544443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.34  E-value=5.7  Score=33.21  Aligned_cols=77  Identities=16%  Similarity=0.031  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy8739         396 LSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLAD-EEGRERATLLGKFRNLEHDIDNIREQLEEEAEGKAD  472 (558)
Q Consensus       396 le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le-~~~~~~~~l~~~~~~le~e~~~l~~~lee~~~~~~~  472 (558)
                      ...++..|...+.+.......++..+..+..++.+|...|- +..............++.....|..++.+...-...
T Consensus        56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~  133 (154)
T 2ocy_A           56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDT  133 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555555556666666666665532 222223333333333444444444444444433333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.00  E-value=4.5  Score=31.40  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      ++...+..++.+++.+...+.+.................++..+.+++
T Consensus        48 sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           48 QLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555555554444444444455555555555554

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=90.99  E-value=2.5  Score=31.73  Aligned_cols=51  Identities=14%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy8739         444 TLLGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESE  494 (558)
Q Consensus       444 ~l~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~  494 (558)
                      .+...+..++.++..++..+.........|-.....++.+|+.|++-++++
T Consensus        32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEGE   82 (86)
T 1x8y_A           32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence            344444445666666666666555556666666677899999999988754

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.92  E-value=4.6  Score=31.35  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         395 KLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRL  434 (558)
Q Consensus       395 ~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~  434 (558)
                      .++.++..+...+......+....+.....+..+..|+..
T Consensus        55 ~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr   94 (101)
T 3u59_A           55 GTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333334444444333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.47  E-value=3  Score=34.85  Aligned_cols=18  Identities=6%  Similarity=0.189  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8739         346 NTRAAADQLAREKAATEK  363 (558)
Q Consensus       346 ~l~~~le~~~~~~~~~e~  363 (558)
                      .....+..+.+..++.+.
T Consensus        21 ~a~~kLeeaek~adE~eR   38 (147)
T 2b9c_A           21 TALQKLEEAEKAADESER   38 (147)
T ss_dssp             HHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.31  E-value=5.5  Score=31.27  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         386 LNDFDAAKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLADEEGRERAT  444 (558)
Q Consensus       386 ~~~l~~~~~~le~e~~~l~~~l~e~~~~~~~~~~~~~~l~~~l~el~~~le~~~~~~~~  444 (558)
                      ++.++..+..+......+...+-+++...+++++..+....-+.++...++.....+.-
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnal   95 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAF   95 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34444445555555555566666666666666666666666666666666655443333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.84  E-value=1.1  Score=36.38  Aligned_cols=50  Identities=14%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy8739         446 LGKFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYESEG  495 (558)
Q Consensus       446 ~~~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle~~~  495 (558)
                      ...+..+..++..|...+.+....+...+.....++.++..+-..|++++
T Consensus        38 ~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEA   87 (135)
T 2e7s_A           38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA   87 (135)
T ss_dssp             HHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677888888888888888888888888888888888888887554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.82  E-value=6.1  Score=31.03  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         136 RNQLFQQKKKLEQENGGLKKDIEDLE  161 (558)
Q Consensus       136 ~~~l~~~~~~l~~~~~~l~~~~e~~~  161 (558)
                      ...|...+..|..+++.|+.++....
T Consensus         5 ~rdL~~~~~~L~~E~e~~k~K~~~~~   30 (111)
T 2v66_B            5 NRDLQADNQRLKYEVEALKEKLEHQY   30 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666777777777777776443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=88.94  E-value=3.2  Score=33.31  Aligned_cols=65  Identities=29%  Similarity=0.459  Sum_probs=44.8

Q ss_pred             HhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         197 QRKDKEIASLTAKLEDEQGLVGKNQKQIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGE  264 (558)
Q Consensus       197 ~~l~~el~~l~~~le~~~~~~~~~~~~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~  264 (558)
                      ..|..+++.++..++...   ...+..+..|..+|..|+.+|+.-+..+..+.-++..|..+++.+..
T Consensus        18 e~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~   82 (120)
T 3i00_A           18 ERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555554442   34555677888899999999988887777777777777777777644

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=88.49  E-value=7.3  Score=30.20  Aligned_cols=45  Identities=24%  Similarity=0.425  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         223 QIKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLE  267 (558)
Q Consensus       223 ~~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~  267 (558)
                      .+.-|..++.-...+...++..|.++.-++..|..++.-|+.++.
T Consensus        63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            456677888888888999999998888888888888888877654

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.00  E-value=7.9  Score=29.99  Aligned_cols=43  Identities=14%  Similarity=0.318  Sum_probs=18.3

Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         449 FRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKY  491 (558)
Q Consensus       449 ~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kl  491 (558)
                      +..++.+++.+...+.+.................+++.+.+++
T Consensus        53 iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           53 LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443333333333444444555554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.77  E-value=6.5  Score=41.45  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=23.6

Q ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8739         448 KFRNLEHDIDNIREQLEEEAEGKADLQRQLSKANADAQLWRTKYE  492 (558)
Q Consensus       448 ~~~~le~e~~~l~~~lee~~~~~~~l~~~l~~l~~e~~~~k~kle  492 (558)
                      .+..++.++..+...++........+...+..+..++..+..++.
T Consensus       538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444455555555555555555555555555555555555554

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=86.39  E-value=12  Score=37.54  Aligned_cols=14  Identities=29%  Similarity=0.468  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy8739         454 HDIDNIREQLEEEA  467 (558)
Q Consensus       454 ~e~~~l~~~lee~~  467 (558)
                      ..|+.+++||+.+.
T Consensus       176 ~sY~~~QKQLeQv~  189 (562)
T 3ghg_A          176 KDYEDQQKQLEQVI  189 (562)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            56666777776653

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=84.83  E-value=13  Score=29.48  Aligned_cols=39  Identities=28%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             HHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8739         375 VQGKLDETNRSLNDFDAAKKKLSIENSDLLRQLEEAESQ  413 (558)
Q Consensus       375 l~~~l~e~~~~~~~l~~~~~~le~e~~~l~~~l~e~~~~  413 (558)
                      -+..++..+......+..+.++..++..++..++.....
T Consensus        44 EqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~   82 (167)
T 4gkw_A           44 EQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL   82 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344444444444444445555555555555555444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.10  E-value=16  Score=30.11  Aligned_cols=16  Identities=44%  Similarity=0.511  Sum_probs=6.5

Q ss_pred             HhHHHHHHHHHHHHHH
Q psy8739         197 QRKDKEIASLTAKLED  212 (558)
Q Consensus       197 ~~l~~el~~l~~~le~  212 (558)
                      ..+..++.+++.++..
T Consensus        85 ~~~~kE~~~lK~el~~  100 (138)
T 3hnw_A           85 ENKDKEIYDLKHELIA  100 (138)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.35  E-value=12  Score=27.33  Aligned_cols=46  Identities=26%  Similarity=0.442  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8739         224 IKELQARIEELEEEVEAERQSRAKAEKQRADLARELEELGERLEEA  269 (558)
Q Consensus       224 ~~~lq~~i~~l~~el~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~  269 (558)
                      +..|..+...|..+....+..+..+..++..|..+...+..++...
T Consensus        29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444445555555556666666666666666666543

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=82.08  E-value=13  Score=27.53  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8739         139 LFQQKKKLEQENGGLKKDIEDLEGDVEKQKRKIEGDLKLTQEAVADLERNKKELEQTIQRKDKEIASLTAKLED  212 (558)
Q Consensus       139 l~~~~~~l~~~~~~l~~~~e~~~~~le~~k~~le~el~~~~~~~~~~~~~~~~le~~~~~l~~el~~l~~~le~  212 (558)
                      +...+..|+..+.+++..+.....++...-..++.++..++..+.........|-..+-.|+.||..++.=++.
T Consensus         6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEG   79 (84)
T 1gk4_A            6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            34445556666666655554322222233334455555555555544455555555566666666666655543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=81.80  E-value=18  Score=28.74  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy8739         424 LTTQLEDTKRLADEEGRERATLLGKFRNLEHDIDNIREQLEEEA  467 (558)
Q Consensus       424 l~~~l~el~~~le~~~~~~~~l~~~~~~le~e~~~l~~~lee~~  467 (558)
                      ....+.+-+..++.+.+.+..-+..+..++.++..++..++...
T Consensus        37 VgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~   80 (167)
T 4gkw_A           37 VGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKAD   80 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33444455555666655556666666666666666666555443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=80.67  E-value=3.1  Score=25.86  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=26.5

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8739         526 CRNYSTELFRLKGAYEEAQEQLEAVRRENKNL  557 (558)
Q Consensus       526 ~~~~e~e~~~l~~~l~e~~~~~~~l~~~~~~l  557 (558)
                      +.+++.....+..+..+++.++.+|.+++..|
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mL   36 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQML   36 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            45677788888888889999999999988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00