Psyllid ID: psy8836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Secondary Structure (PSIPRED)
cccccccccccEEEEEEccccccEEEEEccccEEEEEcccccccEEEEEEEEEcccccEEEcccccEEEEcccccccccccccccccccccccccccccccccHHEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHEEEEEccccccEEEEEccccEEEEEcccccccEEEEEEEEEEccccEEEcccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
vpdhyklnpgaveaiaeqpgspnhiiVGYSKGLVVLWDRttntanqistmnivsdrdsfvwkgharlsvkhtgdskdkepskallksvspgfqptclvqlhppaaVTSLVLHTEWGEY
Flexible Loop (DISEMBL)
VPDHYKLNPGAVEaiaeqpgspnHIIVGYSKGLVVLWDRTTNTanqistmnivsdrdsfVWKGHARLSvkhtgdskdkepSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Low Complexity Region (SEG)
VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Disordered region (IsUnstruct)
**********************NHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARL************************FQPTCLVQLHPPAAVTSLVLHTEW***
Disordered Region (DISOPRED)
VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGH*****************KALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG**
Disordered Region (DISEMBL)
VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS***************LLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Disordered Region (DISPRO)
*PDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q08470	1166	Protein lethal(2) giant l	yes	N/A	0.906	0.091	0.352	6e-10
Q15334	1064	Lethal(2) giant larvae pr	yes	N/A	0.855	0.094	0.362	5e-09
Q5RCX2	1019	Lethal(2) giant larvae pr	no	N/A	0.686	0.079	0.343	6e-09
Q6P1M3	1020	Lethal(2) giant larvae pr	no	N/A	0.686	0.079	0.333	2e-08
P08111	1161	Lethal(2) giant larvae pr	yes	N/A	0.906	0.092	0.330	2e-08
Q7SZE3	1020	Lethal(2) giant larvae pr	yes	N/A	0.677	0.078	0.326	2e-08
Q8MKF0	1036	Lethal(2) giant larvae pr	no	N/A	0.677	0.077	0.347	2e-08
Q80Y17	1036	Lethal(2) giant larvae pr	yes	N/A	0.677	0.077	0.347	2e-08
Q8K4K5	1036	Lethal(2) giant larvae pr	yes	N/A	0.483	0.055	0.449	3e-08
Q3TJ91	1027	Lethal(2) giant larvae pr	no	N/A	0.576	0.066	0.362	2e-07

>sp|Q08470|L2GL_DROPS Protein lethal(2) giant larvae OS=Drosophila pseudoobscura pseudoobscura GN=l(2)gl PE=1 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 12/119 (10%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS----TMNIVSDRD 57
           D Y  +P  AV+ IA  P +   ++VG + G +V+ D  T   +Q S    +MN+VSDRD
Sbjct: 502 DPYSDDPRLAVKKIAFCPKT-GQLVVGGTAGQIVIADFDTAAEDQSSLKYNSMNLVSDRD 560

Query: 58  SFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
            FVWKGH +L+V+      +  P          G   T ++Q+ PPA++T + L   WG
Sbjct: 561 GFVWKGHDQLNVRANLLEDNAVP------LTENGVNITGVLQVLPPASITCMALEANWG 613

Essential for the development of polarized epithelia and for cell polarity associated with asymmetric cell division of neuroblasts during development. Could act as a tumor suppressor.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q15334|L2GL1_HUMAN Lethal(2) giant larvae protein homolog 1 OS=Homo sapiens GN=LLGL1 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 15/116 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW--DRTTNTANQISTMNIVSDRDSF 59
           D Y  +P   V+ +A    +   ++ G +  ++VL   D     A  ++ ++++ DR+ F
Sbjct: 507 DPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPVEQAVSVAIIDLLQDREGF 566

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
            WKGH RLS + TG      P  A       GFQP  LVQ  PPAAVT++ LHTEW
Sbjct: 567 TWKGHERLSPR-TG----PLPWPA-------GFQPRVLVQCLPPAAVTAVTLHTEW 610

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Homo sapiens (taxid: 9606)

>sp|Q5RCX2|L2GL2_PONAB Lethal(2) giant larvae protein homolog 2 OS=Pongo abelii GN=LLGL2 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 15/96 (15%)

Query: 23  NHIIVGYSKGLVVLWDRTTNTANQISTM---NIVSDRDSFVWKGHARLSVKHTGDSKDKE 79
            ++ V  + G V++ +     A Q       +++ D++ + WKGH RL+  H+G  +   
Sbjct: 517 GYLAVAGTAGQVLVLELNDEAAEQAVEQVEADLLQDQEGYRWKGHERLAA-HSGPVR--- 572

Query: 80  PSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
                     PGFQP  LVQ  PPA VTSL LH+EW
Sbjct: 573 --------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Pongo abelii (taxid: 9601)

>sp|Q6P1M3|L2GL2_HUMAN Lethal(2) giant larvae protein homolog 2 OS=Homo sapiens GN=LLGL2 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 15/96 (15%)

Query: 23  NHIIVGYSKGLVVLWDRTTNTANQISTM---NIVSDRDSFVWKGHARLSVKHTGDSKDKE 79
            ++ V  + G V++ +     A Q       +++ D++ + WKGH RL+ + +G  +   
Sbjct: 517 GYLAVAGTAGQVLVLELNDEAAEQAVEQVEADLLQDQEGYRWKGHERLAAR-SGPVR--- 572

Query: 80  PSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
                     PGFQP  LVQ  PPA VTSL LH+EW
Sbjct: 573 --------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Homo sapiens (taxid: 9606)

>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophila melanogaster GN=l(2)gl PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRT---TNTANQISTMNIVSDRDS 58
           D Y  +P  AV+ IA  P +   +IVG + G +V+ D        + +  +MN+VSDRD 
Sbjct: 502 DPYSDDPRLAVKKIAFCPKT-GQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDG 560

Query: 59  FVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           FVWKGH +L+V+      +  P      +   G   + ++Q+ PPA++T + L   WG
Sbjct: 561 FVWKGHDQLNVRSNLLDGEAIP------TTERGVNISGVLQVLPPASITCMALEASWG 612

Essential for the development of polarized epithelia and for cell polarity associated with asymmetric cell division of neuroblasts during development. Isoform p78 has an essential role in control of cell proliferation and differentiation during development and could act as tumor suppressor. Isoform p217 has an accessory function in this respect.

Drosophila melanogaster (taxid: 7227)

>sp|Q7SZE3|L2GL2_DANRE Lethal(2) giant larvae protein homolog 2 OS=Danio rerio GN=llgl2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 24  HIIVGYSKGLVVLWDRTTNTANQI---STMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
           ++ V  + G +++ +     A Q+   + ++++  ++ F WKG ARL V+       +EP
Sbjct: 516 YLTVAGTAGQILVLELNDEAAEQMVEATVVDLLQGQEGFRWKGQARLDVR-------EEP 568

Query: 81  SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
                    PGFQP  LVQ  PPA VT++ LH+EW
Sbjct: 569 VL-----FPPGFQPFALVQCQPPAVVTAIALHSEW 598

Essential for hemidesmosome formation and maintenance of the cytoskeleton elements as well as cellular morphology in the basal epidermis during development. Also involved in regulating growth of the basal epidermis.

Danio rerio (taxid: 7955)

>sp|Q8MKF0|L2GL1_BOVIN Lethal(2) giant larvae protein homolog 1 OS=Bos taurus GN=LLGL1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 24  HIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
            ++V  + G V++ + +   A     ++ ++++ DR+ F WKGH RL+  HTG       
Sbjct: 527 QMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQDREGFTWKGHERLN-PHTG------- 578

Query: 81  SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
               L     GFQP  L+Q  PPAAVT++ LH EW
Sbjct: 579 ----LLPWPAGFQPRMLIQCLPPAAVTAVTLHAEW 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Bos taurus (taxid: 9913)

>sp|Q80Y17|L2GL1_MOUSE Lethal(2) giant larvae protein homolog 1 OS=Mus musculus GN=Llgl1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 24  HIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEP 80
            ++V  + G V++ + +   A     ++ ++++ DR+ F WKGH RL+  HTG       
Sbjct: 527 QMVVAGTAGQVLVLELSEVPAEHAVSVANVDLLQDREGFTWKGHERLN-PHTG------- 578

Query: 81  SKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
               L     GFQP  L+Q  PPAAVT++ LH EW
Sbjct: 579 ----LLPWPAGFQPRMLIQCLPPAAVTAVTLHAEW 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Mus musculus (taxid: 10090)

>sp|Q8K4K5|L2GL1_RAT Lethal(2) giant larvae protein homolog 1 OS=Rattus norvegicus GN=Llgl1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 12/69 (17%)

Query: 47  ISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAV 106
           +++++++ DR+ F WKGH RLS  HTG      P  A       GFQP  L+Q  PPAAV
Sbjct: 553 VASVDLLQDREGFTWKGHERLS-PHTG----PLPWPA-------GFQPRVLIQCLPPAAV 600

Query: 107 TSLVLHTEW 115
           T++ LH EW
Sbjct: 601 TAVALHAEW 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q3TJ91|L2GL2_MOUSE Lethal(2) giant larvae protein homolog 2 OS=Mus musculus GN=Llgl2 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 12/80 (15%)

Query: 36  LWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPT 95
           L D     A +    +++ D++ + WKGH RL+ +         P     ++   GFQP 
Sbjct: 533 LNDEAAEHAVEQVEADLLQDQEGYRWKGHERLAAR---------PGPVCFEA---GFQPF 580

Query: 96  CLVQLHPPAAVTSLVLHTEW 115
            LVQ  PPA VTSL LH+EW
Sbjct: 581 VLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
345487878	1181	PREDICTED: protein lethal(2) giant larva	0.864	0.086	0.384	1e-12
340716449	1172	PREDICTED: protein lethal(2) giant larva	0.864	0.087	0.384	2e-12
350404253	1175	PREDICTED: protein lethal(2) giant larva	0.864	0.086	0.384	2e-12
340716451	1166	PREDICTED: protein lethal(2) giant larva	0.864	0.087	0.384	2e-12
328777996	1154	PREDICTED: lethal(2) giant larvae protei	0.872	0.089	0.373	6e-12
380019667	1123	PREDICTED: protein lethal(2) giant larva	0.872	0.091	0.373	6e-12
383866087	1145	PREDICTED: protein lethal(2) giant larva	0.855	0.088	0.406	6e-12
322785968	459	hypothetical protein SINV_03875 [Solenop	0.864	0.222	0.401	7e-12
307172666	1174	Lethal(2) giant larvae protein-like prot	0.864	0.086	0.384	1e-11
328777994	1128	PREDICTED: lethal(2) giant larvae protei	0.864	0.090	0.376	1e-11

>gi|345487878|ref|XP_001604186.2| PREDICTED: protein lethal(2) giant larvae-like [Nasonia vitripennis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   +I G +  ++   +     N   +  TMN+V+DRD F
Sbjct: 508 DPYSDDPRLAVKKVLLCPLSSTLVIAGTAGHVITAKISAEAINKEIKSVTMNVVNDRDGF 567

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH  L            P++    S + GFQP CL+QL+PPAAVT+L +H+EWG
Sbjct: 568 VWKGHEHL------------PARTASISFAVGFQPHCLLQLYPPAAVTALAMHSEWG 612

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716449|ref|XP_003396710.1| PREDICTED: protein lethal(2) giant larvae-like isoform 1 [Bombus terrestris]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   ++ G +  ++   +     N   +  TMNIV+DRD F
Sbjct: 495 DPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSEPVNKEIKAITMNIVNDRDGF 554

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH RL            P++    S + GFQP  L+QL+PPAAVT+L +H+EWG
Sbjct: 555 VWKGHDRL------------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEWG 599

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404253|ref|XP_003487050.1| PREDICTED: protein lethal(2) giant larvae-like [Bombus impatiens]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   ++ G +  ++   +     N   +  TMNIV+DRD F
Sbjct: 495 DPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSEPVNKEIKAITMNIVNDRDGF 554

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH RL            P++    S + GFQP  L+QL+PPAAVT+L +H+EWG
Sbjct: 555 VWKGHDRL------------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEWG 599

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716451|ref|XP_003396711.1| PREDICTED: protein lethal(2) giant larvae-like isoform 2 [Bombus terrestris]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   ++ G +  ++   +     N   +  TMNIV+DRD F
Sbjct: 495 DPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSEPVNKEIKAITMNIVNDRDGF 554

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH RL            P++    S + GFQP  L+QL+PPAAVT+L +H+EWG
Sbjct: 555 VWKGHDRL------------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEWG 599

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777996|ref|XP_392864.4| PREDICTED: lethal(2) giant larvae protein-like isoform 2 [Apis mellifera]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 20/123 (16%)

Query: 1   VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV 60
           VPD YK NPGAVEAIAEQPG P++I++GY++GL+VLW++ T  A Q+  M + S   +FV
Sbjct: 173 VPDDYKKNPGAVEAIAEQPGHPDNILIGYNRGLMVLWNKATPGAQQL--MGLFSRTQTFV 230

Query: 61  ---------WKGHARLSVKHTGDSKD--KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSL 109
                    W    R    H   S     + S ++L+S       T L    P  A+T +
Sbjct: 231 STQQLESVHWVSETRFVSSHNDGSYAFWSDSSDSMLES-------TTLYGPFPCKAITKI 283

Query: 110 VLH 112
           +++
Sbjct: 284 LVY 286

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019667|ref|XP_003693724.1| PREDICTED: protein lethal(2) giant larvae-like isoform 1 [Apis florea]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 20/123 (16%)

Query: 1   VPDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV 60
           VPD YK NPGAVEAIAEQPG P++I++GY++GL+VLW++ T  A Q+  M + S   +FV
Sbjct: 173 VPDDYKKNPGAVEAIAEQPGHPDNILIGYNRGLMVLWNKATPGAQQL--MGLFSRTQTFV 230

Query: 61  ---------WKGHARLSVKHTGDSKD--KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSL 109
                    W    R    H   S     + S ++L+S       T L    P  A+T +
Sbjct: 231 STQQLESVHWVSETRFVSSHNDGSYAFWSDSSDSMLES-------TTLYGPFPCKAITKI 283

Query: 110 VLH 112
           +++
Sbjct: 284 LVY 286

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866087|ref|XP_003708503.1| PREDICTED: protein lethal(2) giant larvae-like [Megachile rotundata]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 17/118 (14%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDS 58
           D Y  +P  AV+ +   P S   ++ G + G V+    ++  AN+     TMNIV+DRD 
Sbjct: 495 DPYSDDPRLAVKKVLLCPLSSTLVVAG-TAGHVITATVSSEPANKEIKAVTMNIVNDRDG 553

Query: 59  FVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           FVWKGH  L V+ T              S + GFQP  L+QL+PPAAVT+L +H+EWG
Sbjct: 554 FVWKGHDHLPVRTTS------------ISFAVGFQPQSLLQLYPPAAVTALAIHSEWG 599

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785968|gb|EFZ12584.1| hypothetical protein SINV_03875 [Solenopsis invicta]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLV--VLWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   +I G +  ++  V+     N   +  TMNIV+DRD F
Sbjct: 324 DPYSDDPRLAVKKVLLCPLSSTLVIAGTAGHIITAVISSEPINKEIKAITMNIVNDRDGF 383

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH  L            P +    S + GFQP  L+QL+PPAAVT+L LH+EWG
Sbjct: 384 VWKGHDHL------------PPRTTSISFAVGFQPQSLLQLYPPAAVTALALHSEWG 428

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172666|gb|EFN64009.1| Lethal(2) giant larvae protein-like protein 1 [Camponotus floridanus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   ++ G +  ++   +     N   +  TMNIV+DRD F
Sbjct: 337 DPYSDDPRLAVKKVVLCPLSSTLVVAGTAGHIIAATISSEPVNKEIKAVTMNIVNDRDGF 396

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH            D  P +    S + GFQP  L+QL+PPAAVT+L LH+EWG
Sbjct: 397 VWKGH------------DHLPPRTTSISFAVGFQPQSLLQLYPPAAVTALALHSEWG 441

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777994|ref|XP_003249432.1| PREDICTED: lethal(2) giant larvae protein-like isoform 1 [Apis mellifera]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 15/117 (12%)

Query: 3   DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVV--LWDRTTNTANQISTMNIVSDRDSF 59
           D Y  +P  AV+ +   P S   ++ G +  ++   +     N   +  TMNIV+DRD F
Sbjct: 494 DPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITATISSEPVNKEIKAVTMNIVNDRDGF 553

Query: 60  VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
           VWKGH  L            P++    S + GFQP  L+QL+PPAAVT+L +H+EWG
Sbjct: 554 VWKGHDHL------------PARTTSISFAVGFQPQSLLQLYPPAAVTALAIHSEWG 598

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
MGI|MGI:1918843	1027	Llgl2 "lethal giant larvae hom	0.449	0.051	0.4	3.6e-14
RGD|1560307	1026	Llgl2 "lethal giant larvae hom	0.449	0.051	0.4	4.5e-14
ZFIN|ZDB-GENE-060825-69	1045	llgl1 "lethal giant larvae hom	0.601	0.067	0.397	2.4e-09
UNIPROTKB|F1NHH2	720	F1NHH2 "Uncharacterized protei	0.576	0.094	0.412	5e-09
UNIPROTKB|Q15334	1064	LLGL1 "Lethal(2) giant larvae	0.855	0.094	0.362	8.3e-09
UNIPROTKB|A1A4K4	1089	LLGL1 "Lethal(2) giant larvae	0.855	0.092	0.347	8.5e-09
UNIPROTKB|E2RPS3	1159	LLGL1 "Uncharacterized protein	0.855	0.087	0.353	1.5e-08
FB|FBgn0002121	1161	l(2)gl "lethal (2) giant larva	0.898	0.091	0.344	1.9e-08
UNIPROTKB|F1N3Z3	1018	LLGL2 "Uncharacterized protein	0.550	0.063	0.371	2.1e-08
RGD|3012	1036	Llgl1 "lethal giant larvae hom	0.855	0.097	0.336	2.7e-08

MGI|MGI:1918843 Llgl2 "lethal giant larvae homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query:    51 NIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLV 110
             +++ D++ + WKGH RL+ +         P     ++   GFQP  LVQ  PPA VTSL 
Sbjct:   548 DLLQDQEGYRWKGHERLAAR---------PGPVCFEA---GFQPFVLVQCQPPAVVTSLA 595

Query:   111 LHTEW 115
             LH+EW
Sbjct:   596 LHSEW 600

GO:0005737 "cytoplasm" evidence=ISO

GO:0006887 "exocytosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0032878 "regulation of establishment or maintenance of cell polarity" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|1560307 Llgl2 "lethal giant larvae homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query:    51 NIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLV 110
             +++ D++ + WKGH RL+ +         P     ++   GFQP  LVQ  PPA VTSL 
Sbjct:   548 DLLQDQEGYRWKGHERLAAR---------PGPVRFEA---GFQPFVLVQCQPPAVVTSLA 595

Query:   111 LHTEW 115
             LH+EW
Sbjct:   596 LHSEW 600

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0030165 "PDZ domain binding" evidence=IEA;ISO

GO:0032878 "regulation of establishment or maintenance of cell polarity" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA;ISO

ZFIN|ZDB-GENE-060825-69 llgl1 "lethal giant larvae homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 33/83 (39%), Positives = 48/83 (57%)

Query:    33 LVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGF 92
             ++VL D  ++    ++T++++ DR+ F WKGH RL            P K+     +PGF
Sbjct:   534 VMVLGDEKSDHMIDVATVDLLQDREGFTWKGHDRL------------PPKSGSVVFAPGF 581

Query:    93 QPTCLVQLHPPAAVTSLVLHTEW 115
             QP  LVQ  PPAAVT++ LH EW
Sbjct:   582 QPVVLVQCLPPAAVTAVTLHAEW 604

GO:0003674 "molecular_function" evidence=ND

GO:0048919 "posterior lateral line neuromast development" evidence=IMP

GO:0003407 "neural retina development" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|F1NHH2 F1NHH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 33/80 (41%), Positives = 50/80 (62%)

Query:    36 LWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPT 95
             L D  +  A  ++T++++ DR+ F WKGH RL+ ++ G      P      + +PGFQP+
Sbjct:   315 LSDDKSEHAVSVATVDLLQDREGFTWKGHDRLAPRN-G------PI-----AFTPGFQPS 362

Query:    96 CLVQLHPPAAVTSLVLHTEW 115
              LVQ  PPAAVT++ LH+EW
Sbjct:   363 VLVQCVPPAAVTAVTLHSEW 382

GO:0006461 "protein complex assembly" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

UNIPROTKB|Q15334 LLGL1 "Lethal(2) giant larvae protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 42/116 (36%), Positives = 61/116 (52%)

Query:     3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW--DRTTNTANQISTMNIVSDRDSF 59
             D Y  +P   V+ +A    +   ++ G +  ++VL   D     A  ++ ++++ DR+ F
Sbjct:   507 DPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPVEQAVSVAIIDLLQDREGF 566

Query:    60 VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
              WKGH RLS + TG      P  A       GFQP  LVQ  PPAAVT++ LHTEW
Sbjct:   567 TWKGHERLSPR-TGPL----PWPA-------GFQPRVLVQCLPPAAVTAVTLHTEW 610

GO:0006887 "exocytosis" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006461 "protein complex assembly" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IDA

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0031901 "early endosome membrane" evidence=ISS

GO:0032588 "trans-Golgi network membrane" evidence=ISS

GO:0005198 "structural molecule activity" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0032851 "positive regulation of Rab GTPase activity" evidence=ISS

UNIPROTKB|A1A4K4 LLGL1 "Lethal(2) giant larvae protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 41/118 (34%), Positives = 63/118 (53%)

Query:     3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQ---ISTMNIVSDRDS 58
             D Y  +P   V+ +A    +   ++ G + G V++ + +   A Q   +++++++ DR+ 
Sbjct:   507 DPYSDDPRLGVQKVALCKYTAQMVVAG-TAGQVLVLELSDTPAEQTVGVASLDLLQDREG 565

Query:    59 FVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
             F WKGH RLS +  G      P  A       GFQP  LVQ  PPAAVT++ LH EWG
Sbjct:   566 FTWKGHERLSPR-LGPL----PWPA-------GFQPRALVQCLPPAAVTAVTLHAEWG 611

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

UNIPROTKB|E2RPS3 LLGL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 41/116 (35%), Positives = 62/116 (53%)

Query:     3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW--DRTTNTANQISTMNIVSDRDSF 59
             D Y  +P   V+ +A    +   ++ G +  ++VL   D  +  A  +++++++ DR+ F
Sbjct:   602 DPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPSEQAVSVASVDLLQDREGF 661

Query:    60 VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
              WKGH RLS + TG      P  A       GFQP  LVQ  PPAAVT++ LH EW
Sbjct:   662 TWKGHERLSPR-TGPL----PWPA-------GFQPRVLVQCLPPAAVTAVTLHAEW 705

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

FB|FBgn0002121 l(2)gl "lethal (2) giant larvae" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 41/119 (34%), Positives = 66/119 (55%)

Query:     3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS----TMNIVSDRD 57
             D Y  +P  AV+ IA  P +   +IVG + G +V+ D   +   ++S    +MN+VSDRD
Sbjct:   502 DPYSDDPRLAVKKIAFCPKT-GQLIVGGTAGQIVIAD-FIDLPEKVSLKYISMNLVSDRD 559

Query:    58 SFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
              FVWKGH +L+V+   +  D E     + +   G   + ++Q+ PPA++T + L   WG
Sbjct:   560 GFVWKGHDQLNVR--SNLLDGEA----IPTTERGVNISGVLQVLPPASITCMALEASWG 612

GO:0005886 "plasma membrane" evidence=NAS;IDA;TAS

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0007391 "dorsal closure" evidence=TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0005614 "interstitial matrix" evidence=NAS

GO:0042127 "regulation of cell proliferation" evidence=NAS

GO:0030154 "cell differentiation" evidence=NAS

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS;IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=TAS

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IGI

GO:0005938 "cell cortex" evidence=IDA;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007399 "nervous system development" evidence=IMP

GO:0045159 "myosin II binding" evidence=IGI;TAS

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0045175 "basal protein localization" evidence=IGI;NAS;IMP

GO:0017022 "myosin binding" evidence=IGI

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IGI;IMP

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0005918 "septate junction" evidence=NAS;TAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0007559 "histolysis" evidence=NAS

GO:0045200 "establishment of neuroblast polarity" evidence=TAS

GO:0019991 "septate junction assembly" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=NAS

GO:0008105 "asymmetric protein localization" evidence=IMP;TAS

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=IMP;TAS;IPI

GO:0008104 "protein localization" evidence=TAS

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0007423 "sensory organ development" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016323 "basolateral plasma membrane" evidence=TAS

GO:0051668 "localization within membrane" evidence=IMP

GO:0007406 "negative regulation of neuroblast proliferation" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016325 "oocyte microtubule cytoskeleton organization" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP

GO:0055059 "asymmetric neuroblast division" evidence=IGI

GO:0035212 "cell competition in a multicellular organism" evidence=IMP

GO:0090163 "establishment of epithelial cell planar polarity" evidence=IMP

GO:0048730 "epidermis morphogenesis" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP

GO:0005920 "smooth septate junction" evidence=IDA

UNIPROTKB|F1N3Z3 LLGL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query:    38 DRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCL 97
             +   +   Q+   +++ D++ + WKGH RL  +         P     +   PGFQP  L
Sbjct:   536 EEAEHAVGQVEA-DLLRDQEGYRWKGHERLCAR---------PGPVHFE---PGFQPFVL 582

Query:    98 VQLHPPAAVTSLVLHTEW 115
             VQ  PPA VTSLVLH+EW
Sbjct:   583 VQCQPPAVVTSLVLHSEW 600

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0032878 "regulation of establishment or maintenance of cell polarity" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|3012 Llgl1 "lethal giant larvae homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 39/116 (33%), Positives = 60/116 (51%)

Query:     3 DHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW--DRTTNTANQISTMNIVSDRDSF 59
             D Y  +P   ++ +A    +   ++ G +  ++VL   D        +++++++ DR+ F
Sbjct:   506 DPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELSDVPGEHTVSVASVDLLQDREGF 565

Query:    60 VWKGHARLSVKHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 115
              WKGH RLS  HTG      P  A       GFQP  L+Q  PPAAVT++ LH EW
Sbjct:   566 TWKGHERLS-PHTGPL----PWPA-------GFQPRVLIQCLPPAAVTAVALHAEW 609

GO:0000137 "Golgi cis cisterna" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA;ISO

GO:0006461 "protein complex assembly" evidence=IEA;ISO

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0030424 "axon" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA;ISO

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA;ISO

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IDA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA;ISO

GO:0035748 "myelin sheath abaxonal region" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG1983|consensus	993		98.47
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	96.91
PTZ00420	568	coronin; Provisional	96.58
PTZ00421	493	coronin; Provisional	96.54
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.41
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.24
PTZ00420	568	coronin; Provisional	96.08
KOG0305|consensus	484		95.95
KOG0278|consensus	334		95.9
KOG1587|consensus	555		95.78
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.48
KOG0286|consensus	343		95.46
PTZ00421	493	coronin; Provisional	95.16
KOG1273|consensus	405		95.13
KOG0302|consensus	440		94.94
PLN00181	793	protein SPA1-RELATED; Provisional	94.9
KOG0270|consensus	463		94.73
KOG0302|consensus	440		93.79
KOG1036|consensus	323		93.72
PLN00181	793	protein SPA1-RELATED; Provisional	93.67
KOG0318|consensus	603		93.65
KOG1407|consensus	313		93.46
KOG0650|consensus	733		93.15
KOG0268|consensus	433		92.88
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	92.57
KOG0646|consensus	476		92.51
KOG4328|consensus	498		92.49
KOG0303|consensus	472		92.45
KOG1273|consensus	405		92.3
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	92.12
KOG1188|consensus	376		91.34
KOG0307|consensus	1049		91.02
KOG0307|consensus	1049		90.75
KOG0973|consensus	942		90.74
KOG0290|consensus	364		90.33
KOG0284|consensus	464		89.23
KOG0310|consensus	487		89.19
KOG0265|consensus	338		89.17
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	89.17
KOG0263|consensus	707		88.71
KOG0647|consensus	347		88.53
KOG0282|consensus	503		88.29
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	88.15
KOG0273|consensus	524		88.09
KOG0322|consensus	323		88.02
KOG0266|consensus	456		87.35
KOG0284|consensus	464		87.07
KOG0321|consensus	720		86.11
KOG0270|consensus	463		85.49
KOG0293|consensus	519		85.05
KOG0269|consensus	839		84.74
KOG0267|consensus	825		84.63
KOG1523|consensus	361		84.58
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	84.56
KOG0271|consensus	480		84.36
KOG0264|consensus	422		84.36
KOG1034|consensus	385		84.18
KOG0645|consensus	312		83.97
KOG0285|consensus	460		83.84
KOG0772|consensus	641		83.71
KOG1332|consensus	299		83.64
KOG2048|consensus	691		83.07
KOG0264|consensus	422		82.81
KOG0272|consensus	459		82.66
KOG1538|consensus	1081		81.85
KOG0282|consensus	503		81.76
KOG1445|consensus	1012		81.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	80.85
KOG0772|consensus	641		80.76
KOG0647|consensus	347		80.47
KOG1272|consensus	545		80.27
KOG0305|consensus	484		80.26
KOG0303|consensus	472		80.25

>KOG1983|consensus

Probab=98.47  E-value=2.3e-07  Score=84.16  Aligned_cols=104  Identities=32%  Similarity=0.424  Sum_probs=94.1

Q ss_pred             CCCCCCCcc-cchhhhhCCCCCCeEEEEeecceEEEE---eCCCCceeeEEeeccccccccccccCCcccccccCCCCCC
Q psy8836           2 PDHYKLNPG-AVEAIAEQPGSPNHIIVGYSKGLVVLW---DRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKD   77 (118)
Q Consensus         2 ~~~y~~~p~-aV~~I~~cP~ds~~LlIgg~~G~VVl~---d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~   77 (118)
                      .++|.+|++ .+.++.+|+. ++.+.||+.+|++.+.   +...+..+..+.+++.++...+.|++|..+.....     
T Consensus       482 ~~~~~~~~~~~~~~~~ic~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  555 (993)
T KOG1983|consen  482 FDPYSDDPRLGVQKPALCKK-SGQLAVGGTAGQILTLELTDSIVTGAVSFFCADLNQDVSVFKWKGHDRLSPRSN-----  555 (993)
T ss_pred             CCcccccccccCCcchhccc-ccccccccccceeeeeeecccccccceeeeehhhhhccccccccCchhcccccc-----
Confidence            478888998 9999999998 9999999999999999   44556666788888889999999999999998888     


Q ss_pred             CCCccccceeeCCCCCCeeeeeecCChheeeeeecccccCC
Q psy8836          78 KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY  118 (118)
Q Consensus        78 ~~p~k~~~~~~p~G~Q~~~v~q~~Pp~~ITala~~s~~gL~  118 (118)
                             ++..|.|+++...+|+.||+.+++.++.+.|.++
T Consensus       556 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  589 (993)
T KOG1983|consen  556 -------PLSLPDGFQPFVDVQDRPPAGVTQGTLASGWILV  589 (993)
T ss_pred             -------ccCCCCccccceEEEecCCcceeeeccccceecc
Confidence                   7789999999999999999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.93  E-value=0.0037  Score=44.46  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .++.|..+|..|+++|. .+.|++|+..|.|.+||..+.+....+... ...+.++.|...++.....+.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~   73 (289)
T cd00200           4 TLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGTYLASGSSDK   73 (289)
T ss_pred             HhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCCEEEEEcCCC
Confidence            35678899999999997 889999999999999998877654433322 02234667877776666555444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=96.91  E-value=0.00074  Score=36.91  Aligned_cols=33  Identities=27%  Similarity=0.599  Sum_probs=30.2

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEe
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD   38 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d   38 (118)
                      |+.|..+|..|+++|. .+.|+.|+..|.|-+||
T Consensus         7 ~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            4568889999999998 99999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PTZ00420 coronin; Provisional

Probab=96.58  E-value=0.0036  Score=54.31  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ..|-+.|..|+|+|.....|+.|+..|.|.|||..+.+.+..+...  ..+.++.|+.+|.+..+.+.|+
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~SlswspdG~lLat~s~D~  189 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKWNIKGNLLSGTCVGK  189 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEECCCCCEEEEEecCC
Confidence            3466789999999984445567888999999999888765444433  5678899999999987766554

>PTZ00421 coronin; Provisional

Probab=96.54  E-value=0.0043  Score=52.75  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ..|-..|..|+++|...+.|+.|+..|.|.|||..+.+.+..+... ...+.++.|+.++.+..+.+.|++
T Consensus       122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~  191 (493)
T PTZ00421        122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKK  191 (493)
T ss_pred             cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCCCEEEEecCCCE
Confidence            3466789999999986678999999999999999888766444321 144778899999988877776754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.41  E-value=0.0077  Score=42.79  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .+...|..|.++|. .+.|++++..|.|.+||..+.+.+..+... ...+.++.|...+.+......|++
T Consensus       175 ~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~  242 (289)
T cd00200         175 GHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGT  242 (289)
T ss_pred             cCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCc
Confidence            34458999999997 789999999999999999877666544221 135677788887777666554443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.37  E-value=0.0054  Score=36.46  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCC
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN   42 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~   42 (118)
                      +..|+.++|||+ -..|.+|.++|+|.+|++.-+
T Consensus        11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCcEEEEEECCC-CCEEEEEECCCeEEEEECCCc
Confidence            557999999998 999999999999999988443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.24  E-value=0.0028  Score=52.54  Aligned_cols=88  Identities=23%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceee-E---EeeccccccccccccCCcccc-cccCCCCCCCCCccccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQ-I---STMNIVSDRDSFVWKGHARLS-VKHTGDSKDKEPSKALL   85 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~-~---~~v~l~~~~es~~W~~~~~~~-~~~~~d~~~~~p~k~~~   85 (118)
                      +|++|+.+++ ++-|.||.++|.||||.+..++.-. .   -..++-....+..+. .+++. ++.-.+           
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~r~~-----------   69 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNS-PGKLTDISDRAP-----------   69 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGS-S-SEEE-GGG-------------
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCC-CcceEEehhhCC-----------
Confidence            6899999998 9999999999999999665543321 0   000100111111122 22221 111111           


Q ss_pred             eeeCCCCCCeeeeeecCChheeeeeec
Q psy8836          86 KSVSPGFQPTCLVQLHPPAAVTSLVLH  112 (118)
Q Consensus        86 ~~~p~G~Q~~~v~q~~Pp~~ITala~~  112 (118)
                      -..-.||+|..++++. -.+||||+.+
T Consensus        70 ~~~~~gf~P~~l~~~~-~g~vtal~~S   95 (395)
T PF08596_consen   70 PSLKEGFLPLTLLDAK-QGPVTALKNS   95 (395)
T ss_dssp             TT-SEEEEEEEEE----S-SEEEEEE-
T ss_pred             cccccccCchhheecc-CCcEeEEecC
Confidence            1233489999999999 8999999983

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PTZ00420 coronin; Provisional

Probab=96.08  E-value=0.025  Score=49.17  Aligned_cols=70  Identities=13%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCce--------eeEEeeccccccccccccCCcccc-cccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA--------NQISTMNIVSDRDSFVWKGHARLS-VKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~--------~~~~~v~l~~~~es~~W~~~~~~~-~~~~~d~   75 (118)
                      ++.|.++|..|+++|.+.+.|+.|+..|.|-|||..+...        +..+... ...+.++.|+..+... .+.+.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEeCCC
Confidence            4557889999999998788999999999999999865321        1111111 1345678899877654 3445454

>KOG0305|consensus

Probab=95.95  E-value=0.008  Score=51.36  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeec--ceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSK--GLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKD   77 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~--G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~   77 (118)
                      ..|-.||++|+|||--++.|.+||-+  ++|-+||-.+.+-++.+.-.  .++-++.|-.+.+..++.|..+.+
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCC
Confidence            34678999999999999999999865  89999999888887766666  778899999888888888855443

>KOG0278|consensus

Probab=95.90  E-value=0.021  Score=45.74  Aligned_cols=67  Identities=21%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             CCCCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccccccc
Q psy8836           2 PDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus         2 ~~~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      |.+|+.||++|...-||-+ ...+|-+-..+.|-|||-.+...++.++.+  ....|.+-+++|+.-...
T Consensus       136 p~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             chhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe
Confidence            6789999999999999998 666777778899999999999999998888  778888877777765433

>KOG1587|consensus

Probab=95.78  E-value=0.015  Score=50.52  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc-----ccccccccccCCccc--ccccCCCCCCCCCc-
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI-----VSDRDSFVWKGHARL--SVKHTGDSKDKEPS-   81 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l-----~~~~es~~W~~~~~~--~~~~~~d~~~~~p~-   81 (118)
                      -.|..+..||.|++.|+.|--.|||++||....+-..+.....     ....-.+.|-.+...  +.+..+||+...=- 
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            4788999999988888888889999999986665421111111     133335568555444  55555587642110 


Q ss_pred             --ccc-ceeeCCCCCCeeeeeecCChheeeeeecc
Q psy8836          82 --KAL-LKSVSPGFQPTCLVQLHPPAAVTSLVLHT  113 (118)
Q Consensus        82 --k~~-~~~~p~G~Q~~~v~q~~Pp~~ITala~~s  113 (118)
                        ... .-..+-......-.|.....++|+|+.+.
T Consensus       323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~  357 (555)
T KOG1587|consen  323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP  357 (555)
T ss_pred             cccccchhhcccccccccccccccccceeeEeecc
Confidence              000 11122222333345666778888888765

>smart00320 WD40 WD40 repeats

Probab=95.48  E-value=0.012  Score=29.12  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=27.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEe
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWD   38 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d   38 (118)
                      |+.+...|..+.++|. .+.++.|+..|.+.+||
T Consensus         8 ~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence            3445568999999997 68999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0286|consensus

Probab=95.46  E-value=0.032  Score=45.34  Aligned_cols=71  Identities=18%  Similarity=0.220  Sum_probs=61.0

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|..|-+-|-.|++-|+|.+.++-|+..+.--|||......++.|+.+ ..|+.++..+..|--|.+.+.|+
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEccCCCeeeecCCCc
Confidence            477789999999999988999999999999999999999999888865 25788888888888887766554

>PTZ00421 coronin; Provisional

Probab=95.16  E-value=0.065  Score=45.65  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCce-------eeEEeeccccccccccccCCc-ccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA-------NQISTMNIVSDRDSFVWKGHA-RLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~-------~~~~~v~l~~~~es~~W~~~~-~~~~~~~~d~~   76 (118)
                      .+.|-++|..++++|.|.+.|+.|+..|.|.+||..+...       +..+... ...+.++.|+..+ ....+.+.|+.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3446779999999997688999999999999998765421       1111111 0334567788765 45556555643

>KOG1273|consensus

Probab=95.13  E-value=0.03  Score=46.08  Aligned_cols=61  Identities=21%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             chhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836          12 VEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        12 V~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      -+.+.+++- -..|.+|.+.|-|||||+.|-.+..++... +-++.|++|...|+.-.+++.|
T Consensus        26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr~LltsS~D   86 (405)
T KOG1273|consen   26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGRKLLTSSRD   86 (405)
T ss_pred             cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCCEeeeecCC
Confidence            445566665 778999999999999999998876544433 2456799999999998888866

>KOG0302|consensus

Probab=94.94  E-value=0.014  Score=48.79  Aligned_cols=38  Identities=16%  Similarity=0.372  Sum_probs=34.3

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT   41 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~   41 (118)
                      .||-|-.+|..|.|+|.+.+.|.++|..-||.|||++.
T Consensus       342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            46778899999999999999999999999999997643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.90  E-value=0.048  Score=48.19  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=48.8

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccccccccc-CCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWK-GHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~-~~~~~~~~~~~d~   75 (118)
                      ++.|.+.|..|+++|.|.+.|+.|+..|.|.+||..+...+..+...  ..+.++.|. ..+....+.+.|+
T Consensus       571 ~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~latgs~dg  640 (793)
T PLN00181        571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRSLAFGSADH  640 (793)
T ss_pred             ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCEEEEEeCCC
Confidence            44577889999999977888999999999999999887666544433  444556663 3455555554443

>KOG0270|consensus

Probab=94.73  E-value=0.056  Score=45.73  Aligned_cols=97  Identities=18%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCC-CceeeEEeeccccccccccccCCcccc-cccCCCCCCCCCccccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT-NTANQISTMNIVSDRDSFVWKGHARLS-VKHTGDSKDKEPSKALL   85 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~-~~~~~~~~v~l~~~~es~~W~~~~~~~-~~~~~d~~~~~p~k~~~   85 (118)
                      |-+.|+.++|+|..+..||-|+-.|+|.|+|... .+.-..|.++  .++|.+.|+.+.... .++..||....-    -
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~--g~VEkv~w~~~se~~f~~~tddG~v~~~----D  358 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD--GEVEKVAWDPHSENSFFVSTDDGTVYYF----D  358 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec--cceEEEEecCCCceeEEEecCCceEEee----e
Confidence            4458999999999888888888899999998763 2333456677  889999998876654 455445643100    1


Q ss_pred             eeeCCCCCCeeeeeecCChheeeeeecc
Q psy8836          86 KSVSPGFQPTCLVQLHPPAAVTSLVLHT  113 (118)
Q Consensus        86 ~~~p~G~Q~~~v~q~~Pp~~ITala~~s  113 (118)
                       .+.+| +|--.+|- --+.|+.|++|.
T Consensus       359 -~R~~~-~~vwt~~A-Hd~~ISgl~~n~  383 (463)
T KOG0270|consen  359 -IRNPG-KPVWTLKA-HDDEISGLSVNI  383 (463)
T ss_pred             -cCCCC-CceeEEEe-ccCCcceEEecC
Confidence             12334 33222222 234688887775

>KOG0302|consensus

Probab=93.79  E-value=0.13  Score=43.16  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=53.1

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC---ceeeEEeeccccccccccccCCcccccccCCCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN---TANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKD   77 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~---~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~   77 (118)
                      +|-.|-.+|+-|+|.|...+.|.-++..|.|-|||..+.   -.+.+---+  .|+.=+.|.++..+-.+.+.||..
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~--sDVNVISWnr~~~lLasG~DdGt~  326 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN--SDVNVISWNRREPLLASGGDDGTL  326 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC--CceeeEEccCCcceeeecCCCceE
Confidence            344466799999999998999999999999999988665   333232233  567777899998865565555654

>KOG1036|consensus

Probab=93.72  E-value=0.032  Score=45.29  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN   45 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~   45 (118)
                      .+|.+|+.+|. .++|.-||..|.|.+||..+++-+
T Consensus       233 yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  233 YPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             EEeceeEeccc-cceEEecCCCceEEEccCcchhhh
Confidence            58999999999 999999999999999998777554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=93.67  E-value=0.26  Score=43.60  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=48.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccC-CcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      ..|..+.|+|.+.+.|+.|+..|.|.|||..+.+.+..+... ...+.++.|+. .+.+..+.+.|+.
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-EKRVWSIDYSSADPTLLASGSDDGS  599 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-CCCEEEEEEcCCCCCEEEEEcCCCE
Confidence            467789999877888999999999999999887766544322 13356778874 5677777776654

>KOG0318|consensus

Probab=93.65  E-value=0.15  Score=44.32  Aligned_cols=55  Identities=16%  Similarity=0.362  Sum_probs=45.6

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc--ccccccccc
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV--SDRDSFVWK   62 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~--~~~es~~W~   62 (118)
                      -|-|.|=+|+|.|. +.+++-++..-.+-|||-.+.+.++.+.+.=.  .++=+..|+
T Consensus       233 aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq  289 (603)
T KOG0318|consen  233 AHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ  289 (603)
T ss_pred             CccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence            47789999999996 99999999999999999999999888776522  333466788

>KOG1407|consensus

Probab=93.46  E-value=0.2  Score=40.32  Aligned_cols=69  Identities=12%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .|+.|-..|+++.|.|.++..|..++..-.|.+||..+..-...++.+  .+--...|...|....-.+.|
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--~eni~i~wsp~g~~~~~~~kd  127 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--GENINITWSPDGEYIAVGNKD  127 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc--CcceEEEEcCCCCEEEEecCc
Confidence            467788899999999999999999999999999998777665554433  222234688888777544433

>KOG0650|consensus

Probab=93.15  E-value=0.1  Score=45.90  Aligned_cols=61  Identities=23%  Similarity=0.467  Sum_probs=53.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccc
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~   68 (118)
                      |+.|-+.|..|+..|. -.-|.-|+..|.|-||...|..-+.++.++  ..+.++.|...+...
T Consensus       396 yrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLC  456 (733)
T ss_pred             EeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCce
Confidence            7889999999999996 666677778899999999999999888999  999999998777655

>KOG0268|consensus

Probab=92.88  E-value=0.16  Score=42.48  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .|-.|..||-.++.|..+++.+-|+|||..+...++-+...  -.-.+++|..++-.|+..+-|
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee--ccccceecCccccceeecccc
Confidence            67889999998999999999999999999999888766666  457789999977666655544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=92.57  E-value=0.38  Score=41.86  Aligned_cols=87  Identities=16%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCCCC-----CCcccc
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDK-----EPSKAL   84 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~~-----~p~k~~   84 (118)
                      ..|..-+.+|. ..+|++|.+.|.|++||...+-.. .....+.  -.-++||..|..++-.+.-|...     ..+-. 
T Consensus       260 s~v~~ca~sp~-E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~--P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~-  334 (545)
T PF11768_consen  260 SQVICCARSPS-EDKLVLGCEDGSIILYDTTRGVTL-LAKAEFI--PTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK-  334 (545)
T ss_pred             CcceEEecCcc-cceEEEEecCCeEEEEEcCCCeee-eeeeccc--ceEEEEcCCCcEEEEEcCCceEEEEEeecCccc-
Confidence            35666678887 999999999999999998666442 3333322  34568999999886555334321     11100 


Q ss_pred             ceeeCCCCCCeeeeeec
Q psy8836          85 LKSVSPGFQPTCLVQLH  101 (118)
Q Consensus        85 ~~~~p~G~Q~~~v~q~~  101 (118)
                      .....-..+|..++|+.
T Consensus       335 ~qLlsEd~~P~~~L~Ls  351 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLS  351 (545)
T ss_pred             eeeccccCCCccEEeee
Confidence            22233456666666664

>KOG0646|consensus

Probab=92.51  E-value=0.071  Score=45.29  Aligned_cols=67  Identities=13%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             CCcccchhhhhCCCCCCeEEEEe-ecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGY-SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg-~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      -=||.|.+|+..|.  |.+++|| .+|.+-+|.+++++.+..+... -|.+..+..-+++..+++.+.||.
T Consensus        79 v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG~LL~v~~aH-YQ~ITcL~fs~dgs~iiTgskDg~  146 (476)
T KOG0646|consen   79 VLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSGILLNVLSAH-YQSITCLKFSDDGSHIITGSKDGA  146 (476)
T ss_pred             ccccceeeeecCCC--ceEEEeecccCcEEEEEeccccHHHHHHhh-ccceeEEEEeCCCcEEEecCCCcc
Confidence            35899999999985  7777887 9999999999999776433211 155666667777888777776654

>KOG4328|consensus

Probab=92.49  E-value=0.092  Score=44.71  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeec-ceEEEEeCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSK-GLVVLWDRTTN   42 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~-G~VVl~d~~~~   42 (118)
                      ||-.++.|..++++|...++|+++|.. |+|=+||+.++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~  220 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ  220 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCC
Confidence            555789999999999977677766654 99999998533

>KOG0303|consensus

Probab=92.45  E-value=0.086  Score=44.41  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      +.|-.++|||.-.+-|+-||..-.|.+||..+++++-.  ++-..-+-|..|...|.++.+...|
T Consensus       132 rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~l~TtckD  194 (472)
T KOG0303|consen  132 RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSLLCTTCKD  194 (472)
T ss_pred             eeEEEEeecccchhhHhhccCCceEEEEeccCCceeee--cCCCCeEEEEEeccCCceeeeeccc
Confidence            57888999999899999999999999999999998633  3322446678888888888666645

>KOG1273|consensus

Probab=92.30  E-value=0.2  Score=41.31  Aligned_cols=57  Identities=11%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcc
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR   66 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~   66 (118)
                      .|-++|+.|+|.+. -|+|+-+...-.|.+||+.....++++..+  ..+-+..||.+.+
T Consensus        63 aH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~  119 (405)
T KOG1273|consen   63 AHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKR  119 (405)
T ss_pred             ccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccC
Confidence            36789999999996 999999999999999999999988877777  7777777776554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=92.12  E-value=0.2  Score=37.21  Aligned_cols=61  Identities=15%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             ccchhhhhCCCCCCeEEEEee---cceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYS---KGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~---~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .++..|.|+|. .+.|++||-   +|.|-+||..+.+.+....-.   ....+.|..+|+.+++..+.
T Consensus       101 ~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  101 QPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             CCceEEEECCC-CCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEEec
Confidence            46678999998 889998874   478999999877776443322   24567899999999877643

>KOG1188|consensus

Probab=91.34  E-value=0.11  Score=42.85  Aligned_cols=58  Identities=22%  Similarity=0.386  Sum_probs=40.3

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeE--EeeccccccccccccCCc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQI--STMNIVSDRDSFVWKGHA   65 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~--~~v~l~~~~es~~W~~~~   65 (118)
                      |---|++|.++|.|+++|+-|.+.|+|-|||.+.......  -.+|--..+....|.+.+
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            3346899999999999999999999999997654422211  123322445566677766

>KOG0307|consensus

Probab=91.02  E-value=0.13  Score=47.63  Aligned_cols=70  Identities=14%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEE-eeccccccccccccCCcccccccCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS-TMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~-~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      ++.|.|+|..|.+||.-.+-|.=|+..|.|.|||+.+-+.--.. ..+.++++.++.|...-..-..+.++
T Consensus       112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~  182 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP  182 (1049)
T ss_pred             hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence            67799999999999996668888889999999999776554222 33455788899998877666555544

>KOG0307|consensus

Probab=90.75  E-value=0.17  Score=46.85  Aligned_cols=71  Identities=10%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccc-cccccccCCcc-cccccCCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSD-RDSFVWKGHAR-LSVKHTGDSKD   77 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~-~es~~W~~~~~-~~~~~~~d~~~   77 (118)
                      |..|=..|-.++||++|++.|+--|..+.|+.|+..+.|++.-+..+  .+ .-.+.|-...+ ++....-||+.
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCCCcchhhhheeccce
Confidence            45567789999999999999999999999999999999998543331  11 12234654444 44444444443

>KOG0973|consensus

Probab=90.74  E-value=0.42  Score=43.94  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      |+.|+.-|.-+.|.|. ...|.-++....|+|||.++-+.+.++..- +.-..++.|...|+++.+.+.|.+
T Consensus       125 l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDrt  194 (942)
T KOG0973|consen  125 LRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDRT  194 (942)
T ss_pred             EecCCCccceeccCCC-ccEEEEecccceEEEEccccceeeeeeecc-cccccceEECCccCeeeeecCCce
Confidence            3458899999999994 999999999999999999998887766544 234578999999999987776643

>KOG0290|consensus

Probab=90.33  E-value=0.24  Score=40.51  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT   41 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~   41 (118)
                      .|-+.|..|+|.|..+..||-||..-|+.+||+.+
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            36679999999999999999999999999998744

>KOG0284|consensus

Probab=89.23  E-value=0.29  Score=41.39  Aligned_cols=64  Identities=16%  Similarity=0.113  Sum_probs=42.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccc
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~   68 (118)
                      ||.|---|..+.|+|-+.+.|..||..|.|+.|..-.++.+..+..-=...+-|+.||.-|-..
T Consensus       302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil  365 (464)
T KOG0284|consen  302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL  365 (464)
T ss_pred             hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence            4556667889999999999999999999999996654433321111100334466677555544

>KOG0310|consensus

Probab=89.19  E-value=1.5  Score=37.70  Aligned_cols=63  Identities=17%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc-eeeEEeeccccccccccccCCcccccccC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT-ANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~-~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      |--.|..+++.|.+..+++-||=.|.|-+||..+.. .+--+.-.  +++|++.--+.|.+..+.+
T Consensus       152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg--~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG--CPVESVLALPSGSLIASAG  215 (487)
T ss_pred             CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC--CceeeEEEcCCCCEEEEcC
Confidence            445788999999977788889999999999987763 32223344  7788887777777766555

>KOG0265|consensus

Probab=89.17  E-value=1.1  Score=36.74  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=46.6

Q ss_pred             CcccchhhhhCCCCCCe--EEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           8 NPGAVEAIAEQPGSPNH--IIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~--LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      |-.=|..+.  |.+-|.  ++-|.-.|++-|||..++++++.++..  .++.+|.|+..+.+..+..-|
T Consensus       131 h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  131 HTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeecccc
Confidence            333444444  554444  444555699999999999999988777  889999999988887777655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=89.17  E-value=0.43  Score=35.44  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=42.2

Q ss_pred             ccchhhhhCCCCCCeEEEE-e-ecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccC
Q psy8836          10 GAVEAIAEQPGSPNHIIVG-Y-SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIg-g-~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      ++|..++|+|. .++|+|. | ..+.|.+||...+.+.. +. .  ..+..+.|..+|++....+
T Consensus        60 ~~I~~~~WsP~-g~~favi~g~~~~~v~lyd~~~~~i~~-~~-~--~~~n~i~wsP~G~~l~~~g  119 (194)
T PF08662_consen   60 GPIHDVAWSPN-GNEFAVIYGSMPAKVTLYDVKGKKIFS-FG-T--QPRNTISWSPDGRFLVLAG  119 (194)
T ss_pred             CceEEEEECcC-CCEEEEEEccCCcccEEEcCcccEeEe-ec-C--CCceEEEECCCCCEEEEEE
Confidence            46999999997 7777654 3 34799999997554432 22 2  4567789999999887665

>KOG0263|consensus

Probab=88.71  E-value=0.29  Score=43.63  Aligned_cols=40  Identities=25%  Similarity=0.453  Sum_probs=35.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN   45 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~   45 (118)
                      |..|-++|.++..+|. -+.|.-|++.|.|.|||..+.+.+
T Consensus       573 F~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  573 FTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             ecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcch
Confidence            4568899999999996 999999999999999999886554

>KOG0647|consensus

Probab=88.53  E-value=0.49  Score=38.73  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeE-EeeccccccccccccCCccccc
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQI-STMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~-~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      =+||..|+.||. .|+|.-+|..|....||-....-+.. -..+  +.+..-..++.|..+.
T Consensus       251 VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  251 VYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFA  309 (347)
T ss_pred             eEEecceEeecc-cceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEE
Confidence            369999999997 99999999999999997644433321 1233  6666666777777774

>KOG0282|consensus

Probab=88.29  E-value=0.94  Score=38.88  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCc-ccccccCCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHA-RLSVKHTGDSK   76 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~-~~~~~~~~d~~   76 (118)
                      .|..|-.+|..+.++.. -..++-++=.+.+-+||..|+++.+++..+  .-...+..|-++ ..|....+|++
T Consensus       253 tf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~k  323 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKK  323 (503)
T ss_pred             hhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceEEEEEecC--CCceeeecCCCCCcEEEEecCCCc
Confidence            36668889999999987 888888888999999999999999888877  555555555555 55666666654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=88.15  E-value=0.98  Score=33.34  Aligned_cols=41  Identities=12%  Similarity=0.012  Sum_probs=32.4

Q ss_pred             ccchhhhhCCCCCCeEEEE-eecceEEEEeCCCCceeeEEeec
Q psy8836          10 GAVEAIAEQPGSPNHIIVG-YSKGLVVLWDRTTNTANQISTMN   51 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIg-g~~G~VVl~d~~~~~~~~~~~v~   51 (118)
                      +.+..++++|. ...|+++ +.+|.|.+||..+.+.+..+.+.
T Consensus       249 ~~~~~~~~~~~-g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       249 QRVWQLAFTPD-EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             CCcceEEECCC-CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            35778899996 6677776 56899999999999987766554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0273|consensus

Probab=88.09  E-value=0.76  Score=39.49  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccc-ccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDR-DSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~-es~~W~~~~~~~~~~~~d~   75 (118)
                      |-.|-++|-.|-|+=. -..|+-||..|.+||||-.++++-+.++.-  +.- -.++|.....+ .++..|+
T Consensus       272 l~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~--s~~~lDVdW~~~~~F-~ts~td~  339 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFH--SAPALDVDWQSNDEF-ATSSTDG  339 (524)
T ss_pred             hhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeec--cCCccceEEecCceE-eecCCCc
Confidence            4457899999999976 889999999999999999999888776654  333 45789988776 4555464

>KOG0322|consensus

Probab=88.02  E-value=0.47  Score=38.32  Aligned_cols=19  Identities=42%  Similarity=0.945  Sum_probs=16.7

Q ss_pred             eEEEEeecceEEEEeCCCC
Q psy8836          24 HIIVGYSKGLVVLWDRTTN   42 (118)
Q Consensus        24 ~LlIgg~~G~VVl~d~~~~   42 (118)
                      -|+.||++|+|++||.+++
T Consensus       167 lllaGyEsghvv~wd~S~~  185 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTG  185 (323)
T ss_pred             EEEEeccCCeEEEEEccCC
Confidence            4678999999999999886

>KOG0266|consensus

Probab=87.35  E-value=1.1  Score=37.33  Aligned_cols=67  Identities=24%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccc-cccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSD-RDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~-~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|+-.|..+..+|. .+.++-|+..|.|.+||..+.+.+..+...  ++ +.++.-..++....+...|+
T Consensus       243 ~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~  310 (456)
T KOG0266|consen  243 KGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDG  310 (456)
T ss_pred             cCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCc
Confidence            457889999999998 699999999999999999997777665544  33 33444566666666665454

>KOG0284|consensus

Probab=87.07  E-value=0.33  Score=41.00  Aligned_cols=92  Identities=16%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEE-eeccccccccccccCCcccccccCCCCCCCCCcccccee-
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS-TMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKS-   87 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~-~v~l~~~~es~~W~~~~~~~~~~~~d~~~~~p~k~~~~~-   87 (118)
                      ..|-.+.|-|+ -|.|++|..+|-+.||+..+=...... .=+  +.+....|-+.+..-++...+|         .++ 
T Consensus        97 c~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~~g~wmiSgD~gG---------~iKy  164 (464)
T KOG0284|consen   97 CPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSHNGTWMISGDKGG---------MIKY  164 (464)
T ss_pred             cceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEccCCCEEEEcCCCc---------eEEe
Confidence            35677889998 999999999999999976221110000 112  4456778999999988887554         332 


Q ss_pred             eCCCCCCeeeeeecCChheeeeeecc
Q psy8836          88 VSPGFQPTCLVQLHPPAAVTSLVLHT  113 (118)
Q Consensus        88 ~p~G~Q~~~v~q~~Pp~~ITala~~s  113 (118)
                      |-+-+|--+.+|-.--++|+.||.++
T Consensus       165 WqpnmnnVk~~~ahh~eaIRdlafSp  190 (464)
T KOG0284|consen  165 WQPNMNNVKIIQAHHAEAIRDLAFSP  190 (464)
T ss_pred             cccchhhhHHhhHhhhhhhheeccCC
Confidence            33444444455556678999999875

>KOG0321|consensus

Probab=86.11  E-value=0.61  Score=41.36  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT   43 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~   43 (118)
                      |..|-|+|..+++.|.|+.-+|-||..|.|.|||..-+.
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG  178 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence            556788999999999999999999999999999875444

>KOG0270|consensus

Probab=85.49  E-value=1  Score=38.37  Aligned_cols=64  Identities=19%  Similarity=0.218  Sum_probs=49.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe-eccccccccccccCCcccccccCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST-MNIVSDRDSFVWKGHARLSVKHTG   73 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~-v~l~~~~es~~W~~~~~~~~~~~~   73 (118)
                      |--||..++||=...+.|.=|+..-.|+|||..+.+....+. -.  ..+.++.||...+...-+++
T Consensus       242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~~p~~LLsGs  306 (463)
T KOG0270|consen  242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPYEPSVLLSGS  306 (463)
T ss_pred             chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCCCceEEEecc
Confidence            556999999999877777788888999999998887765444 22  45667889988877765554

>KOG0293|consensus

Probab=85.05  E-value=0.61  Score=39.74  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      |-.+|-.|.|.|. .|+|+--|.+--+.+||-.+++-...+.-.+-....|.+|-.++.-+++.+.|
T Consensus       268 h~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d  333 (519)
T KOG0293|consen  268 HSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD  333 (519)
T ss_pred             ccCceEEEEECCC-CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence            5568999999996 99999999999999999999888755554422335677898888888777655

>KOG0269|consensus

Probab=84.74  E-value=0.84  Score=41.23  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccc-cccccc-cCCcccccccC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSD-RDSFVW-KGHARLSVKHT   72 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~-~es~~W-~~~~~~~~~~~   72 (118)
                      .|+.|-++|..+.+++..++.|+-|+..|.|-+||++.+.-...+..+  .+ +..+.| .+.+-.|.+.+
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n--SESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN--SESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc--chhhhceeeccCCCceEEEec
Confidence            466788999999999999999999999999999999888776665554  22 344455 34444444444

>KOG0267|consensus

Probab=84.63  E-value=0.34  Score=43.44  Aligned_cols=69  Identities=12%  Similarity=0.182  Sum_probs=54.0

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      |..|-..|+.|-+++. .+.|.-|-.+|.|-+||+....++..+..- ....-++.||-.+.++++...|+
T Consensus        66 ~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~~~~a~gStdt  134 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYGEFFASGSTDT  134 (825)
T ss_pred             eeccCCcceeeecCcc-hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccceEEeccccccc
Confidence            4567789999999997 888888888899999999988887543322 24566788999999997777664

>KOG1523|consensus

Probab=84.58  E-value=0.94  Score=37.33  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee---eEEeeccccccccccccCCcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN---QISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~---~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +|+.-+.|.|. ++|+.||+.+-.|-+|-+..+..=   .++-..|-..+.++.||-.+-+..-.++|++
T Consensus       101 rAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen  101 RAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             cceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence            68999999998 999999999999999955444321   2222333366788999988877766666654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=84.56  E-value=2.7  Score=30.95  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             cchhhhhCCCCCCeEEEEe-ecceEEEEeCCCCceeeEEeeccccccccccccCCccccccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGY-SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg-~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      .+..+.++|. .++|++++ ..|.|.+||..+.+.+..+...  ...+++.|...++.....
T Consensus        74 ~~~~~~~~~~-g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~  132 (300)
T TIGR03866        74 DPELFALHPN-GKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNT  132 (300)
T ss_pred             CccEEEECCC-CCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEE
Confidence            3456778886 77787765 4689999999887766555433  345667777777665433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0271|consensus

Probab=84.36  E-value=1.5  Score=37.13  Aligned_cols=67  Identities=15%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             CCCCcccchhhhhCCC----CCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccC
Q psy8836           5 YKLNPGAVEAIAEQPG----SPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~----ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      ++.|---|..|+|.|-    ..|+|.-++-.|.|.|||......+ +...-=.....++.|-|++=.-..+.
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~gliySgS~  266 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWGGEGLIYSGSQ  266 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEcCCceEEecCC
Confidence            4445557888888752    2788888999999999999887665 23333335677888998886654444

>KOG0264|consensus

Probab=84.36  E-value=3.4  Score=35.02  Aligned_cols=110  Identities=12%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC--CceeeEEee-ccccccccccccCCcccc-cccCCCCCC---
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT--NTANQISTM-NIVSDRDSFVWKGHARLS-VKHTGDSKD---   77 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~--~~~~~~~~v-~l~~~~es~~W~~~~~~~-~~~~~d~~~---   77 (118)
                      |+.|--+|+-.+|||.+...+.-.|..|.+.|||..+  .+.-..... .  .++.++.|..+...- .+.++|++.   
T Consensus       223 ~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~--~~vn~~~fnp~~~~ilAT~S~D~tV~Lw  300 (422)
T KOG0264|consen  223 FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS--AEVNCVAFNPFNEFILATGSADKTVALW  300 (422)
T ss_pred             eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC--CceeEEEeCCCCCceEEeccCCCcEEEe
Confidence            5556679999999999999999999999999999984  333222111 2  556777876665444 344446432   


Q ss_pred             --CCCccccceeeCCCCCCeeeeeecCChheeeeeecccccCC
Q psy8836          78 --KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY  118 (118)
Q Consensus        78 --~~p~k~~~~~~p~G~Q~~~v~q~~Pp~~ITala~~s~~gL~  118 (118)
                        +.-+++  +-.-.|...+.+.--.-|--=|-||.+.+.|.+
T Consensus       301 DlRnL~~~--lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl  341 (422)
T KOG0264|consen  301 DLRNLNKP--LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL  341 (422)
T ss_pred             echhcccC--ceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence              222222  222234444333222356667788888777653

>KOG1034|consensus

Probab=84.18  E-value=2.8  Score=34.79  Aligned_cols=72  Identities=15%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc---cccccccccCCcccccccCCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV---SDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~---~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|+.|=++|..|-.||.+++.|+-|...--|-||+..+..-+-++- .+-   ..+-|+.|+..+...++++-|-+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-G~egHrdeVLSvD~~~~gd~i~ScGmDhs  204 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-GVEGHRDEVLSVDFSLDGDRIASCGMDHS  204 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-ccccccCcEEEEEEcCCCCeeeccCCcce
Confidence            4677888999999999988888888888999999988775443221 100   23346779988888888887743

>KOG0645|consensus

Probab=83.97  E-value=1.8  Score=35.05  Aligned_cols=65  Identities=12%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee--eEEeeccccccccccccCCcccccccCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN--QISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~--~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      |-++|..|+|.|. -+.|+.|.=.+.++||.-...+..  ..++.. -.+..++.|..+|.+-.+++.|
T Consensus        60 hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRD  126 (312)
T KOG0645|consen   60 HKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGNYLATCSRD  126 (312)
T ss_pred             chheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCC
Confidence            6689999999998 899999999999999954444332  222221 0446688899888887655533

>KOG0285|consensus

Probab=83.84  E-value=3.2  Score=34.94  Aligned_cols=70  Identities=16%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +|-.|.-+|..++.+|. -+.|+-||....+-+||..++..+..+... ..+..++.-+...++.++++-|+
T Consensus       230 ~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  230 HYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             HhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCCceEEecCCc
Confidence            46678889999999998 899999999999999999999877554311 13344444444444555444454

>KOG0772|consensus

Probab=83.71  E-value=3.7  Score=36.00  Aligned_cols=99  Identities=14%  Similarity=0.208  Sum_probs=60.6

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC----ceeeEEeeccc-cccccccccCCcccccccCCCCCCCCCcc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN----TANQISTMNIV-SDRDSFVWKGHARLSVKHTGDSKDKEPSK   82 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~----~~~~~~~v~l~-~~~es~~W~~~~~~~~~~~~d~~~~~p~k   82 (118)
                      |--.+.--.|||.+.+.++-.+..|.+-|||....    +++..-..+.. -...+..|..++++....-.||+..    
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ----  342 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ----  342 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee----
Confidence            44566777899999999999999999999965322    33222111100 2234667999999965555456543    


Q ss_pred             ccceeeCCCC---CCeee-eeec-CChheeeeeeccc
Q psy8836          83 ALLKSVSPGF---QPTCL-VQLH-PPAAVTSLVLHTE  114 (118)
Q Consensus        83 ~~~~~~p~G~---Q~~~v-~q~~-Pp~~ITala~~s~  114 (118)
                          .|--|-   .|... -+-+ |=+-|||++.+..
T Consensus       343 ----~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  343 ----IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             ----eeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence                333222   22221 2222 5568999998753

>KOG1332|consensus

Probab=83.64  E-value=1.2  Score=35.80  Aligned_cols=73  Identities=15%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             CCCcccchhhhh-CCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc-ccccccc--ccCCcccccccCCCCCCC
Q psy8836           6 KLNPGAVEAIAE-QPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV-SDRDSFV--WKGHARLSVKHTGDSKDK   78 (118)
Q Consensus         6 ~~~p~aV~~I~~-cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~-~~~es~~--W~~~~~~~~~~~~d~~~~   78 (118)
                      +.|-|+|-+++| ||..-+.|.=.+-.|+||||.+.+.+-.+..+-..- ....++.  ||+.|-+..|..+||+.+
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence            446677766665 799778888888899999998877643321111100 2233444  577788888888888653

>KOG2048|consensus

Probab=83.07  E-value=1.3  Score=39.43  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=48.8

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee-eEEeeccccccccccccCCcccccccC
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN-QISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~-~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      |.+|.+++..=. |++|.|+=+.|.|=+|+....=-. ..+...--..+|+++|-..++||+...
T Consensus        25 Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~   88 (691)
T KOG2048|consen   25 PSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL   88 (691)
T ss_pred             ccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC
Confidence            889999999976 999999999999999998776222 223333115579999998899986555

>KOG0264|consensus

Probab=82.81  E-value=1.6  Score=36.85  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee-eEEeeccccccccccccCC-cccccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN-QISTMNIVSDRDSFVWKGH-ARLSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~-~~~~v~l~~~~es~~W~~~-~~~~~~~~~d~~   76 (118)
                      |.+.|-.++++|-+...|.-|+..+.|-|||+++-..- ..++.- -.++-.+.|.-| .....+++.|++
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCc
Confidence            67789999999998888889999999999988654332 122111 123445567443 333455555654

>KOG0272|consensus

Probab=82.66  E-value=0.93  Score=38.44  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=49.2

Q ss_pred             CCCCcccchhhhhCCCC-CCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           5 YKLNPGAVEAIAEQPGS-PNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~d-s~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      ++.|-..|..+.++|-+ ...|.-|...|.|-||+..+.+.++.++-.+ ..+-.+.||.+|++-.+..-|
T Consensus       213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~-~RVs~VafHPsG~~L~TasfD  282 (459)
T KOG0272|consen  213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL-ARVSRVAFHPSGKFLGTASFD  282 (459)
T ss_pred             EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch-hhheeeeecCCCceeeecccc
Confidence            45677889999999995 5588888999999999998876664444332 233456788888776444333

>KOG1538|consensus

Probab=81.85  E-value=1.6  Score=39.57  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccc-cccccccCCcccccccCCCCC--CCCCcccccee
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSD-RDSFVWKGHARLSVKHTGDSK--DKEPSKALLKS   87 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~-~es~~W~~~~~~~~~~~~d~~--~~~p~k~~~~~   87 (118)
                      .|-.|+.-|. -.+|++|-.+ -+.+||...+...+.+-..  .| ...+.|.++|+.|.+.++|-.  .=.+..-+-++
T Consensus        14 ci~d~afkPD-GsqL~lAAg~-rlliyD~ndG~llqtLKgH--KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPD-GTQLILAAGS-RLLVYDTSDGTLLQPLKGH--KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCC-CceEEEecCC-EEEEEeCCCcccccccccc--cceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            7888999997 6666655433 4678988777666554433  33 357789999999999887721  12233334566


Q ss_pred             eCCCCCCeeeeeec---CChheeeeeecccccC
Q psy8836          88 VSPGFQPTCLVQLH---PPAAVTSLVLHTEWGE  117 (118)
Q Consensus        88 ~p~G~Q~~~v~q~~---Pp~~ITala~~s~~gL  117 (118)
                      ++||    -+|||+   |..++-+-+--|.+||
T Consensus        90 YSH~----D~IQCMsFNP~~h~LasCsLsdFgl  118 (1081)
T KOG1538|consen   90 YSHN----DAIQCMSFNPITHQLASCSLSDFGL  118 (1081)
T ss_pred             eccC----CeeeEeecCchHHHhhhcchhhccc
Confidence            6665    578997   8888777777777776

>KOG0282|consensus

Probab=81.76  E-value=1.3  Score=38.02  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC-CceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           4 HYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT-NTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         4 ~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~-~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|+.|+-.|.+|.|.|..--.||=||..|.|-||+.-. .+.++.|..- -..+..+.|...|..|.+.+-|.
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCCeeeeeecce
Confidence            36778999999999998344455678889999998755 4444333211 15566778988888888777773

>KOG1445|consensus

Probab=81.67  E-value=2.5  Score=38.14  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCCcccccccCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .|+-+..||. +.-|+..+..|.|-|||.++.+.+.  +.+ -.+-+.|..|..+|++...+..|
T Consensus       130 ~vE~l~fHpT-aDgil~s~a~g~v~i~D~stqk~~~--el~~h~d~vQSa~WseDG~llatscKd  191 (1012)
T KOG1445|consen  130 IVECLRFHPT-ADGILASGAHGSVYITDISTQKTAV--ELSGHTDKVQSADWSEDGKLLATSCKD  191 (1012)
T ss_pred             EEEEeecccC-cCceEEeccCceEEEEEcccCceee--cccCCchhhhccccccCCceEeeecCC
Confidence            6888999998 9999999999999999999887652  222 11335677899999998766534

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=80.85  E-value=2.5  Score=24.77  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=27.4

Q ss_pred             ccchhhhhCCCCC--CeEEEEeecceEEEEeCCC
Q psy8836          10 GAVEAIAEQPGSP--NHIIVGYSKGLVVLWDRTT   41 (118)
Q Consensus        10 ~aV~~I~~cP~ds--~~LlIgg~~G~VVl~d~~~   41 (118)
                      |||..+..+|++.  ..|+++--.|.|=|+|..+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            6888999999845  5888899999999999875

It contains a characteristic DLL sequence motif.

>KOG0772|consensus

Probab=80.76  E-value=4.5  Score=35.49  Aligned_cols=67  Identities=12%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-----cc------cccccccccCCcc-cccccCCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-----IV------SDRDSFVWKGHAR-LSVKHTGDSKD   77 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-----l~------~~~es~~W~~~~~-~~~~~~~d~~~   77 (118)
                      .+|..+++.|. .++|||.+.+.|..|+|....++++..-.+     +-      ..+.+-+||...+ .|++++.|++.
T Consensus       215 h~i~sl~ys~T-g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  215 HQINSLQYSVT-GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             cccceeeecCC-CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            58999999997 999999999999999998777776544333     11      4566788987765 45677777765

>KOG0647|consensus

Probab=80.47  E-value=1.4  Score=36.09  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCC-ceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN-TANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~-~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|..|++.|..-+.|+-|.=.|.|-+|+.... ..+.....++...+-+++|..+|...-..++|+.
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~   95 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ   95 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence            99999999974444445556799999987653 3333333343366667889999976666666643

>KOG1272|consensus

Probab=80.27  E-value=1.1  Score=38.52  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee-eEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN-QISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~-~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.-|.+..+..||. ...+.+|.+.|.|.+|.-.+++.+ +.+.-.  ....+++-+..|....+++.|-+
T Consensus       248 ~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKiLcH~--g~V~siAv~~~G~YMaTtG~Dr~  316 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKILCHR--GPVSSIAVDRGGRYMATTGLDRK  316 (545)
T ss_pred             HccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHHHhcC--CCcceEEECCCCcEEeecccccc
Confidence            445678999999998 999999999999999988777764 111122  44566777788888877776643

>KOG0305|consensus

Probab=80.26  E-value=1.4  Score=37.88  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN   45 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~   45 (118)
                      +.|..+.|+++ -+.|.||...|.|-|||..+..-+
T Consensus       218 ~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  218 ELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             CceEEEEECCC-CCEEEEeecCCeEEEEehhhcccc
Confidence            47889999998 999999999999999986554443

>KOG0303|consensus

Probab=80.25  E-value=9.1  Score=32.59  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             CCCCCC---CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC-------ceeeEEeeccccc-cccccccCCccccc-
Q psy8836           2 PDHYKL---NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN-------TANQISTMNIVSD-RDSFVWKGHARLSV-   69 (118)
Q Consensus         2 ~~~y~~---~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~-------~~~~~~~v~l~~~-~es~~W~~~~~~~~-   69 (118)
                      +++|-.   |-++|--|.|||.|..-+.-|++.-.|-||+...+       +.+..+...  +. .--+.||-...... 
T Consensus        71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH--~rrVg~V~wHPtA~NVLl  148 (472)
T KOG0303|consen   71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH--QRRVGLVQWHPTAPNVLL  148 (472)
T ss_pred             CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec--ceeEEEEeecccchhhHh
Confidence            444443   88899999999999999999999999999954222       222122222  22 22446998877664 


Q ss_pred             ccCCCCCCCCCccccceeeCCCCCCeeeeeecCChheeeeeecccccC
Q psy8836          70 KHTGDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGE  117 (118)
Q Consensus        70 ~~~~d~~~~~p~k~~~~~~p~G~Q~~~v~q~~Pp~~ITala~~s~~gL  117 (118)
                      +.++|        .....|--|-- +.++-+--|..|.++..|..=++
T Consensus       149 sag~D--------n~v~iWnv~tg-eali~l~hpd~i~S~sfn~dGs~  187 (472)
T KOG0303|consen  149 SAGSD--------NTVSIWNVGTG-EALITLDHPDMVYSMSFNRDGSL  187 (472)
T ss_pred             hccCC--------ceEEEEeccCC-ceeeecCCCCeEEEEEeccCCce
Confidence            33333        11334444422 23344558899999998876444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	5e-06

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 25  IIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKAL 84
           + V    G VVL+    N    +       D +    +     +     D +D+ P+   
Sbjct: 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG-- 560

Query: 85  LKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 116
              V  GF P+  V  +     +++  ++  G
Sbjct: 561 ---VRQGFMPSTAVHAN-KGKTSAIN-NSNIG 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.43
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.37
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.34
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.23
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.21
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.13
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.12
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.12
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.11
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.1
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.08
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.05
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.05
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.87
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.83
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.77
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.76
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.76
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.73
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.69
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.68
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.67
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.65
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.59
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.56
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.54
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.53
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.52
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.49
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.49
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.47
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.46
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.45
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.41
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.37
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.36
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.35
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.34
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.34
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.31
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.31
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.29
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.28
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.27
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.27
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.25
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.24
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.23
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.13
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.1
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.02
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.83
2pm7_B	297	Protein transport protein SEC13, protein transport	95.83
3jro_A	753	Fusion protein of protein transport protein SEC13	95.81
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.8
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.75
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.69
3jro_A	753	Fusion protein of protein transport protein SEC13	95.63
2pm7_B	297	Protein transport protein SEC13, protein transport	95.62
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.55
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.51
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.44
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.41
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.34
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.25
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.21
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.14
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.06
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.99
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	94.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.81
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	94.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.69
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.62
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.37
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	93.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	93.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	93.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.57
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.11
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	93.07
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	92.51
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.41
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	92.24
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	92.13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	91.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	90.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	90.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	90.34
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	89.57
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.51
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	89.14
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	87.71
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	87.66
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.12
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	86.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	86.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	85.55
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	85.24
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	84.65
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	84.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	82.39
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	81.49

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00033  Score=51.40  Aligned_cols=69  Identities=6%  Similarity=-0.025  Sum_probs=54.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++.|.++|..|+++|. .+.|++|+..|.|.+||..+.+.+..+... ...+.++.|...++...+.+.|+
T Consensus        28 l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGH-TGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCC
Confidence            3457789999999996 889999999999999999888877655422 14567788988888887777664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.37  E-value=0.0006  Score=49.94  Aligned_cols=70  Identities=13%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             CCCCcccchhhhhCCCC--CCeEEEEeecceEEEEeCCC-Ccee-eEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGS--PNHIIVGYSKGLVVLWDRTT-NTAN-QISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~d--s~~LlIgg~~G~VVl~d~~~-~~~~-~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++.|.++|..|+++|.+  .+.|+.|+..|.|.+||..+ .+.+ ..+.. -...+.++.|...++...+...|+
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence            34577899999999974  47888888899999999876 4443 22221 115577888998888887776664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.34  E-value=0.0007  Score=49.10  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|.+.|..|+++|. .+.|++++..|.|.+||..+.+.+..+..+  ..+.++.|..+++.......|+
T Consensus       180 ~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          180 QGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             ecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCCC
Confidence            346678999999996 899999999999999999998887666555  6778888988888877666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.001  Score=49.94  Aligned_cols=67  Identities=9%  Similarity=0.023  Sum_probs=51.3

Q ss_pred             cccchhhhhCC--CCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           9 PGAVEAIAEQP--GSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         9 p~aV~~I~~cP--~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .+.|..|+++|  . .+.|+.|+..|.|.+||..+.+............+.++.|+.++++..+.+.|+.
T Consensus       125 ~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          125 ANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             SSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             CCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            35799999999  5 7778889999999999999888765443332245778899999999888776654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.21  E-value=0.00033  Score=51.87  Aligned_cols=73  Identities=10%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             CCCCCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc--eeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           2 PDHYKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT--ANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         2 ~~~y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~--~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      |+-|+.|.++|..++++|. .+.|++|+..|.|.+||..+.+  .+..+... ...+.++.|..++++..+...|+.
T Consensus         1 ~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~   75 (372)
T 1k8k_C            1 MAYHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRN   75 (372)
T ss_dssp             -CEEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CceecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCCCe
Confidence            4456678889999999996 8889999999999999988876  44333311 145677889888888877766653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.13  E-value=0.00041  Score=50.94  Aligned_cols=71  Identities=15%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe--eccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST--MNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~--v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|...|..|+++|.+.+.|+.|+..|.|.+||..+.+.+..+.  -.-...+.++.|..+++...+.+.|+.
T Consensus       112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC
Confidence            34677999999999668999999999999999999887765541  111155678889988888887776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.0009  Score=48.12  Aligned_cols=69  Identities=13%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.++|..|++ |. .+.|+.|+..|.|.+||..+.+....+... ...+.++.|..+++.......|+.
T Consensus        14 l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             ECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSC
T ss_pred             hhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCe
Confidence            4557889999999 75 889999999999999999888766544432 255678889888888877776653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.12  E-value=0.00048  Score=53.64  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccC-CcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      +.|..|+|+|.+.+.|++|+..|.|.|||..+.+....+... =...+.++.|.. ++.+..+.+.|+.
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            469999999987889999999999999998776554332211 014567788874 5666666666653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.12  E-value=0.00058  Score=51.45  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.+.|..++++|. .+.|+.|+..|.|.+||..+......+... ...+.++.|...++...+.+.|+.
T Consensus       180 ~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          180 FTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCc
Confidence            3457789999999996 889999999999999999888776554422 145678889999988888877754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.11  E-value=0.00043  Score=50.59  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc----ccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI----VSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l----~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|-++|..|+++|.+.+.|+-|+..|.|.|||..+.+.........    ...+.++.|..++++..+...|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            45888999999999866777788999999999876654321111111    13455677877777766555553

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.11  E-value=0.00044  Score=50.66  Aligned_cols=67  Identities=15%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccc--cCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVW--KGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W--~~~~~~~~~~~~d~   75 (118)
                      +.|.++|..++++|. .+.|+.|+..|.|.+||..+.+......-+  ..+.++.|  ...+++..+.+.|+
T Consensus        83 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg  151 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDK  151 (368)
T ss_dssp             EECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETTS
T ss_pred             ccccCCEEEEEECcC-CCEEEEEcCCCcEEEEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCCC
Confidence            346789999999995 899999999999999999999887654444  66788889  77777777766564

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.10  E-value=0.00058  Score=54.36  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|..+|..|+|+|.+.+.|+.|+..|.|.+||..+...+.... .-...+.++.|+.++++....+.|++
T Consensus       147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~  215 (434)
T 2oit_A          147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGT  215 (434)
T ss_dssp             SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCc
Confidence            3677999999999878889999999999999998875542221 11255778899999998887776654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0019  Score=48.53  Aligned_cols=69  Identities=12%  Similarity=0.122  Sum_probs=52.0

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc-----ccccccccccCCcc-cccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI-----VSDRDSFVWKGHAR-LSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l-----~~~~es~~W~~~~~-~~~~~~~d~   75 (118)
                      .|...|..|+++|.....|+.|+..|.|.+||..+.+.+..+...-     ...+.++.|...++ +......|+
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence            4677999999999767889999999999999999888775555421     15567888988864 555555454

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.08  E-value=0.0022  Score=46.01  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc----eeeEEeeccccccccccccC--CcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT----ANQISTMNIVSDRDSFVWKG--HARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~----~~~~~~v~l~~~~es~~W~~--~~~~~~~~~~d~~   76 (118)
                      +.|.++|..|+++|. .+.|+.|+..|.|.+||..+..    ....+.. -...+.++.|..  ++++..+.+.|+.
T Consensus         8 ~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            458889999999996 8899999999999999887653    2222221 114567788977  4777777766654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.06  E-value=0.0016  Score=49.01  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++.|...|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+... ....+.++.|...+++..+...|+
T Consensus       222 ~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          222 FTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            3457778999999997 899999999999999999887765444322 112456788999998888777664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.05  E-value=0.0009  Score=49.47  Aligned_cols=69  Identities=16%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe-eccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST-MNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~-v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+....+. ......+.++.|..+++.......|+
T Consensus        49 ~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  118 (372)
T 1k8k_C           49 KEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR  118 (372)
T ss_dssp             ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC
Confidence            446779999999995 8999999999999999998876543332 12124567788988888877766554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.05  E-value=0.00053  Score=51.35  Aligned_cols=70  Identities=9%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc---eeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT---ANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~---~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+   .... ...-...+.++.|..+++...+.+.|+.
T Consensus        51 ~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (377)
T 3dwl_C           51 FSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARV  123 (377)
T ss_dssp             BCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSC
T ss_pred             EecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeE-ecccCCceEEEEECCCCCEEEEEecCCe
Confidence            4557789999999997 8899999999999999988776   2111 1111155677889888888877776643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.03  E-value=0.00092  Score=49.57  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      |+.|-.+|..|+++|. ...|+.|+..|.|.|||..+.+.+..+... ...+.+..|..++++..+.+.|+
T Consensus         9 ~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             EEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTS
T ss_pred             ecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEeCCCCEEEEECCCC
Confidence            4557789999999997 889999999999999999888776544432 02345666777777777776564

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.00  E-value=0.0006  Score=56.25  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=55.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++.|.+.|..|+++|. .+.|++|+..|.|.|||..+.+.+..+... ...+.++.|..+++...+.+.|+
T Consensus         9 ~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             EEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTS
T ss_pred             eecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCCC
Confidence            3457889999999996 899999999999999999888777665532 14567888999998887777564

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.97  E-value=0.0023  Score=49.00  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVK   70 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~   70 (118)
                      +.|.+.|..++++|. .+.|++|+..|.|.+||..+.+.+..+... ...+.++.|+..+.....
T Consensus       214 ~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~ll~  276 (401)
T 4aez_A          214 QGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLA  276 (401)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTEEE
T ss_pred             cCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCEEE
Confidence            346789999999995 899999999999999999988776443311 255678889886654443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.0016  Score=48.04  Aligned_cols=70  Identities=11%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             CCcccchhhhhCCC------------CCCeEEEEeecceEEEEeCCCCceeeEEeecc---ccccccccccCC---cccc
Q psy8836           7 LNPGAVEAIAEQPG------------SPNHIIVGYSKGLVVLWDRTTNTANQISTMNI---VSDRDSFVWKGH---ARLS   68 (118)
Q Consensus         7 ~~p~aV~~I~~cP~------------ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l---~~~~es~~W~~~---~~~~   68 (118)
                      .|...|..++++|.            |.+.|+.|+..|.|.+||..+..........+   ...+.++.|...   ++..
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            35678999999995            58999999999999999987654321111111   144567889888   7777


Q ss_pred             cccCCCCC
Q psy8836          69 VKHTGDSK   76 (118)
Q Consensus        69 ~~~~~d~~   76 (118)
                      .+.+.|+.
T Consensus       225 ~s~~~dg~  232 (379)
T 3jrp_A          225 ASVSQDRT  232 (379)
T ss_dssp             EEEETTSC
T ss_pred             EEEeCCCE
Confidence            77776654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.96  E-value=0.001  Score=48.56  Aligned_cols=61  Identities=11%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      +.|.++|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+...  ..+.++.|...+.+..
T Consensus       212 ~~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          212 IGHTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLC  272 (340)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEEE
T ss_pred             cCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCceee
Confidence            346678999999996 889999999999999999998887666555  6666777776655543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.95  E-value=0.0028  Score=46.40  Aligned_cols=69  Identities=10%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|...|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|...+++..+.+.|++
T Consensus        62 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~  130 (312)
T 4ery_A           62 SGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES  130 (312)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSC
T ss_pred             ccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCc
Confidence            346778999999996 899999999999999999988876555432 133556778888888877776654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.92  E-value=0.0043  Score=46.11  Aligned_cols=67  Identities=13%  Similarity=0.101  Sum_probs=50.1

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCc---ccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHA---RLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~---~~~~~~~~d~   75 (118)
                      .|.+.|..|+++|.+.+.|+.|+..|.|.+||..+.+.+..+...  ....++.|....   .+......|+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCC
Confidence            367799999999976889999999999999999998887666544  556666665533   3555554443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.92  E-value=0.0016  Score=49.97  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=49.9

Q ss_pred             CCcccchhhhhCCCCCCeEEEEe--ecceEEEEeCCCCceeeEEeeccccccccccccCCccccccc
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGY--SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg--~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      .+..+|..|+++|.....++.|+  ..|.|.+||..+.+.+..+...  ..+.++.|..+++.....
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEE
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEE
Confidence            46679999999997445555544  5899999999998887766655  778899999999888764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.91  E-value=0.0027  Score=48.60  Aligned_cols=71  Identities=17%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc------cccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV------SDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~------~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +..|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+...-.      ..+.++.|...+++..+...|+.
T Consensus       245 ~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             ECCCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             ECCcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            3447789999999996 89999999999999999999887755543200      11456778888888877776653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.90  E-value=0.0026  Score=48.14  Aligned_cols=68  Identities=7%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~~   76 (118)
                      +...|..++++|. .+.|++|+..|.|.+||..+.+.+..+.......+.++.|...++ +..+...|+.
T Consensus       246 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  314 (420)
T 3vl1_A          246 STSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM  314 (420)
T ss_dssp             CCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe
Confidence            3467888999996 889999999999999999888776554433224567888998888 6666665653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.00064  Score=59.12  Aligned_cols=70  Identities=9%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc-----------------ccccccccccCCcccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI-----------------VSDRDSFVWKGHARLS   68 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l-----------------~~~~es~~W~~~~~~~   68 (118)
                      +.|.++|..|+++|.+.++|++|+..|.| |||..+.+.+..+....                 ...+.++.|+.+++..
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            45788999999999878999999999999 99999988776554321                 0236678899999988


Q ss_pred             cccCCCCC
Q psy8836          69 VKHTGDSK   76 (118)
Q Consensus        69 ~~~~~d~~   76 (118)
                      .+.+.|++
T Consensus       227 asgs~Dg~  234 (902)
T 2oaj_A          227 ITIHEDNS  234 (902)
T ss_dssp             EEEETTCC
T ss_pred             EEEECCCe
Confidence            88887764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.87  E-value=0.0021  Score=48.38  Aligned_cols=69  Identities=9%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|..+|..|+++|. .+.|+.|+..|.|.+||..+.+....+... ...+.++.|..+++...+.+.|++
T Consensus       203 ~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             CCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCc
Confidence            346678999999996 889999999999999999888776544322 133567789888888888776754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0014  Score=47.99  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=54.6

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      +.|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+...  ..+.++.|...++.......+
T Consensus        71 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSP--VPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSSEEEEEECC
T ss_pred             hhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCeEEEEEccCCCEEEEecCC
Confidence            446779999999996 899999999999999999998887776655  778888998888877665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.00084  Score=49.50  Aligned_cols=70  Identities=9%  Similarity=-0.004  Sum_probs=49.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCC--CCceeeEEeeccccccccccccCC--cccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRT--TNTANQISTMNIVSDRDSFVWKGH--ARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~--~~~~~~~~~v~l~~~~es~~W~~~--~~~~~~~~~d~~   76 (118)
                      ++.|.++|..|+++|. .+.|++|+..|.|.+||..  +.+.+..+... ...+.++.|...  +++..+.+.|+.
T Consensus         7 ~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             EEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            3457889999999996 8899999999999999886  33333332211 144567788654  777777766654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.85  E-value=0.0022  Score=48.87  Aligned_cols=65  Identities=8%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEE-eeccccccccccccCCccccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS-TMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~-~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      ..|.+.|..|+++|. .+.|++|+..|.|.+||..+.+.+..+ ...--....++.|..++++....
T Consensus       173 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             TTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred             CCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence            457789999999995 899999999999999999988877554 22200114567798888877765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.83  E-value=0.005  Score=46.46  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee--eEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN--QISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~--~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|.+.|..|+++|. .+.|+.|+..|.|.|||..+....  ..+... ...+.++.|..++++..+.+.|+.
T Consensus        59 ~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D~~  128 (345)
T 3fm0_A           59 GHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGH-ENEVKSVAWAPSGNLLATCSRDKS  128 (345)
T ss_dssp             SCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCC-CCCceEEEEeCCCCEEEEEECCCe
Confidence            46779999999996 899999999999999988766432  222211 134667889999988887776654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.77  E-value=0.0011  Score=49.28  Aligned_cols=70  Identities=16%  Similarity=0.306  Sum_probs=49.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec------------cccccccccccC-CcccccccC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN------------IVSDRDSFVWKG-HARLSVKHT   72 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~------------l~~~~es~~W~~-~~~~~~~~~   72 (118)
                      +.|.++|..|+++|.|.+.|+.|+..|.|.+||..+.+....+...            -...+.++.|.. .+.+..+.+
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            4477899999999955899999999999999998777655433311            114456677876 555665555


Q ss_pred             CCC
Q psy8836          73 GDS   75 (118)
Q Consensus        73 ~d~   75 (118)
                      .|+
T Consensus       120 ~d~  122 (408)
T 4a11_B          120 FDK  122 (408)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            454

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.77  E-value=0.0015  Score=49.71  Aligned_cols=71  Identities=6%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecce-EEEEeCCCCceeeEEeec-cccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGL-VVLWDRTTNTANQISTMN-IVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~-VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|-++|..|+++|. .+.|+.|+..|. |.|||..+.+.+..+... -...+.++.|..+++...+.+.|++
T Consensus       191 ~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             EEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            3457789999999995 889999999997 999999998887666511 1256778899999998877776653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.77  E-value=0.0018  Score=48.99  Aligned_cols=70  Identities=7%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|..++++..+.+.|+.
T Consensus       135 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             TTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCc
Confidence            3457889999999996 889999999999999999888776554421 145677889888888777766654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0031  Score=47.36  Aligned_cols=69  Identities=10%  Similarity=-0.010  Sum_probs=53.4

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCc-ccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHA-RLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~-~~~~~~~~d~~   76 (118)
                      .|...|..|+++|.|.+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|...+ ++..+.+.|+.
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCCCEEEEEecCCc
Confidence            466789999999966999999999999999999888877555432 1456788898887 66666665643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.76  E-value=0.0021  Score=46.51  Aligned_cols=66  Identities=15%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .+...|..++++|. .+.|++++..|.|.+||..+.+.+....-.  ..+.++.|..+++.......|+
T Consensus       263 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          263 LHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTS
T ss_pred             CCccceeEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEecCC--CcEEEEEECCCCCEEEEecCCC
Confidence            46678999999996 889999999999999999888776443333  5677888988888877666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.73  E-value=0.0029  Score=48.29  Aligned_cols=66  Identities=11%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~   75 (118)
                      |...|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|...+. ++.+...|+
T Consensus       138 h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg  204 (357)
T 4g56_B          138 HDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDG  204 (357)
T ss_dssp             CSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTS
T ss_pred             CCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCC
Confidence            5678999999996 899999999999999999998887655432 13456677766554 455555554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.69  E-value=0.0013  Score=50.43  Aligned_cols=69  Identities=3%  Similarity=-0.041  Sum_probs=54.6

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe-eccccccccccccCCcccccccCCCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST-MNIVSDRDSFVWKGHARLSVKHTGDSKDK   78 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~-v~l~~~~es~~W~~~~~~~~~~~~d~~~~   78 (118)
                      |..+|..++++|. .+.|+.|+..|.|.|||..+.+.+..+. .. ...+.++.|..++++..+.+.|++.+
T Consensus       268 ~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          268 RFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAANTIH  337 (365)
T ss_dssp             SCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             CCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            5568999999996 8999999999999999999988775432 21 14467889999999988888776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.68  E-value=0.0034  Score=47.38  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe-ec-cccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST-MN-IVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~-v~-l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|.+.|..++++|. .+.|+.|+..|.|.+||..+.+...... .+ -...+.++.|+..+++..+.+.|+.
T Consensus       102 ~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~  173 (345)
T 3fm0_A          102 EGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT  173 (345)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC
T ss_pred             cCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc
Confidence            446779999999996 8999999999999999987654322111 11 1144667889998888877776653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.67  E-value=0.0025  Score=50.31  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=54.4

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccC----------CcccccccCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKG----------HARLSVKHTGD   74 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~----------~~~~~~~~~~d   74 (118)
                      +..|.+.|..++++|. .+.|++|+..|.|.+||..+.+.+..+...-...+.++.|..          .+++..+.+.|
T Consensus       484 ~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d  562 (615)
T 1pgu_A          484 KTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  562 (615)
T ss_dssp             SSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             cCCccCceEEEEECCC-CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence            3457789999999997 899999999999999999888876543320124567788988          78888777766


Q ss_pred             CC
Q psy8836          75 SK   76 (118)
Q Consensus        75 ~~   76 (118)
                      +.
T Consensus       563 g~  564 (615)
T 1pgu_A          563 TN  564 (615)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.67  E-value=0.0015  Score=49.91  Aligned_cols=69  Identities=10%  Similarity=0.002  Sum_probs=51.5

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccC-CcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      +.+..+|..|+++|.+.+.|+.|+..|.|.|||..+.+.+..+.-.  ..+.++.|+. ++++..+.+.|++
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~--~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHR--DFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCS--SCEEEEEECSSSTTEEEEEETTSC
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCC--CCEEEEEEeCCCCCEEEEEcCCCe
Confidence            3456789999999985566777888899999999998887543222  4567888984 6777777776754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.65  E-value=0.0016  Score=47.73  Aligned_cols=69  Identities=14%  Similarity=0.041  Sum_probs=49.7

Q ss_pred             CcccchhhhhCCC--CCCeEEEEeecceEEEEeCCCCceeeEEee----ccccccccccccCCcc-cccccCCCCC
Q psy8836           8 NPGAVEAIAEQPG--SPNHIIVGYSKGLVVLWDRTTNTANQISTM----NIVSDRDSFVWKGHAR-LSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~--ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v----~l~~~~es~~W~~~~~-~~~~~~~d~~   76 (118)
                      +...|..++++|.  +.+.|++|+..|.|.+||..+.+....+..    .-...+.++.|...++ +..+.+.|+.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            4568999999994  489999999999999998876655433321    1114566788988887 6666665653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.65  E-value=0.0015  Score=49.92  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe-eccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST-MNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~-v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|...|..|+++|...+.|+.|+..|.|.+||..+.+.+..+. ..-...+.++.|..+++...+.+.|+
T Consensus       129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence            3677999999999845789999999999999999888775542 11124567888998888887776564

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.59  E-value=0.0033  Score=48.88  Aligned_cols=69  Identities=14%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc-cccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV-SDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~-~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|-++|..|+++|.|.++|+.|+..|.|.+||..++........+-. ....++.|...+++..+.+.|+
T Consensus       162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg  231 (435)
T 4e54_B          162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG  231 (435)
T ss_dssp             SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC
Confidence            46779999999998899999999999999999987655322222100 1234566777777776665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.57  E-value=0.0048  Score=47.94  Aligned_cols=70  Identities=10%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC---ceeeEEeeccccccccccccCCcc-cccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN---TANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~---~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~   75 (118)
                      +..|...|..|+++|.+.+.|+.++..|.|.+||..+.   ..+..+... ...+.++.|+..++ +..+.+.|+
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEEEEeCCCCCCEEEEEeCCC
Confidence            34567789999999976888899999999999998766   333333211 14567888988887 455666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.56  E-value=0.0045  Score=46.26  Aligned_cols=64  Identities=11%  Similarity=0.042  Sum_probs=52.8

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEee-------ccccccccccccCCcccccccCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTM-------NIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v-------~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .+...|..|+++|. . .|++|+..|.|.+||..+.+.+..+..       +  ..+.++.|...+++..+.+.|
T Consensus       184 ~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~--~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          184 TPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS--NSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             SSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC--CCEEEEEECSSTTEEEEEEEE
T ss_pred             CCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC--CccceEEECCCCCEEEEEecC
Confidence            36678999999997 5 999999999999999998888766665       4  667888998888887766655

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.54  E-value=0.0049  Score=47.21  Aligned_cols=67  Identities=9%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~~   76 (118)
                      |-++|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|..+++ ++.+.+.|++
T Consensus       126 H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~  193 (344)
T 4gqb_B          126 HDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNR  193 (344)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCCCceeeeccccc
Confidence            5678999999996 889999999999999999998887655432 13456777877765 4556555543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.53  E-value=0.0068  Score=44.32  Aligned_cols=68  Identities=12%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             CcccchhhhhCCCCC---CeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccC-CcccccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSP---NHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds---~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      +.+.|..++++|...   +.|++|+..|.|.+||..+.+.+..+... ...+.++.|.. .+.+..+...|+.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~  139 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHA  139 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCe
Confidence            346799999999733   47888999999999999888877655421 25577888988 7777777776654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.53  E-value=0.0022  Score=47.92  Aligned_cols=66  Identities=6%  Similarity=-0.067  Sum_probs=47.9

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc------------------eeeEEeeccccccccccccCCccccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT------------------ANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~------------------~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      |...|..|+++|. .+.|+.|+..|.|.+||..+.+                  .+..+  .-...+.++.|..++++..
T Consensus       145 h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          145 LRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEE
T ss_pred             cCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEE
Confidence            6779999999996 8899999999999999875332                  22111  1113456778888888877


Q ss_pred             ccCCCCC
Q psy8836          70 KHTGDSK   76 (118)
Q Consensus        70 ~~~~d~~   76 (118)
                      +.+.|+.
T Consensus       222 ~~~~d~~  228 (377)
T 3dwl_C          222 YAGHDSS  228 (377)
T ss_dssp             EEETTTE
T ss_pred             EEeCCCc
Confidence            7776654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.52  E-value=0.0045  Score=47.29  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++.|.+.|..++++|. .+.|+.|+..|.|.|||..+.+....+... ...+.++.|...+++..+.+.|+
T Consensus        62 l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g~~las~~~d~  130 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNGQSVACGGLDS  130 (380)
T ss_dssp             ECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTSSEEEECCSSS
T ss_pred             ccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCCCEEEEeeCCC
Confidence            3457889999999996 899999999999999999888776544432 12345667777777766655553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.49  E-value=0.004  Score=48.38  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCce----e---eEEeeccccccccccccC-CcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA----N---QISTMNIVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~----~---~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      .|...|..|+++|...+.|+.|+..|.|.+||..+...    +   ..+. .-...+.++.|+. ++.++.+...|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence            36678999999998666999999999999999876321    1   1111 1113467788987 5666666665543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.49  E-value=0.0087  Score=44.20  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccccccccc--CCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWK--GHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~--~~~~~~~~~~~d~   75 (118)
                      ++.|...|..++++|.|.+.|+.|+..|.|.+||..+......+...-......+.|.  .++++..+.+.|+
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence            3456778999999998789999999999999999876654433322211122333443  3445555655554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.47  E-value=0.0037  Score=46.68  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      +..|...|..++++|. .+.|+.|+..|.|.|||..+.+.+..+...  ..+.++.|..++.......
T Consensus       192 ~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          192 FIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             ECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEc
Confidence            3446778999999996 889999999999999999999887666555  6777888988887765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.46  E-value=0.0049  Score=46.32  Aligned_cols=64  Identities=9%  Similarity=0.034  Sum_probs=47.7

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccCCCC
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDS   75 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~   75 (118)
                      ...|..++++|. .+.|++|+..|.|.+||...+.+ ..+... ...+.++.|...++ +..+.+.|+
T Consensus       163 ~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          163 DYWYCCVDVSVS-RQMLATGDSTGRLLLLGLDGHEI-FKEKLH-KAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             SCCEEEEEEETT-TTEEEEEETTSEEEEEETTSCEE-EEEECS-SSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCCeEEEEECCC-CCEEEEECCCCCEEEEECCCCEE-EEeccC-CCcEEEEEECCCCCCEEEEEeCCC
Confidence            467999999997 89999999999999999854433 333321 15567888998888 666666564

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.45  E-value=0.0025  Score=49.45  Aligned_cols=69  Identities=10%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKD   77 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~   77 (118)
                      .|.++|..++++|. .+.|+.|+..|.|.+||..+.+....+... ...+.++.|...+++..+.+.|++.
T Consensus       106 gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          106 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             CCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             ccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            36779999999996 889999999999999999888776554432 1345677898888888877777654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.41  E-value=0.011  Score=45.59  Aligned_cols=64  Identities=22%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             CCcccchhhhhCCCCCCeEEEEe--ecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGY--SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg--~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      .+.++|..+++||.+.+.|.+|+  ..|.|.+||..+.+....+...  ....+..|..+++..+..+
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEE
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEEEEE
Confidence            35679999999999777777765  4599999999999887666655  6677778887777666543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0075  Score=44.90  Aligned_cols=67  Identities=7%  Similarity=0.038  Sum_probs=45.3

Q ss_pred             CcccchhhhhCCCCCC-eEEEEeecceEEEEeC----CCCc------eeeEEeecc---------ccccccccccCCccc
Q psy8836           8 NPGAVEAIAEQPGSPN-HIIVGYSKGLVVLWDR----TTNT------ANQISTMNI---------VSDRDSFVWKGHARL   67 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~-~LlIgg~~G~VVl~d~----~~~~------~~~~~~v~l---------~~~~es~~W~~~~~~   67 (118)
                      |.+.|..|+++|. .+ .|++|+..|.|.+||.    .+.+      ....+...+         ...+.++.|...+++
T Consensus        44 ~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           44 KLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             ECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             ccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4578999999998 55 8999999999999999    7776      222222211         025667788888888


Q ss_pred             ccccCCCC
Q psy8836          68 SVKHTGDS   75 (118)
Q Consensus        68 ~~~~~~d~   75 (118)
                      ......|+
T Consensus       123 l~~~~~dg  130 (425)
T 1r5m_A          123 IVTGVENG  130 (425)
T ss_dssp             EEEEETTS
T ss_pred             EEEEeCCC
Confidence            77766554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.36  E-value=0.0035  Score=47.14  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC----CceeeEEeeccccccccccccC-CcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT----NTANQISTMNIVSDRDSFVWKG-HARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~----~~~~~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~~   76 (118)
                      +.|.+.|..|+++|.....|+.|+..|.|.+||..+    ...+..+.-+  ..+.++.|.. .++...+.+.|+.
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE--KPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS--SCEEEEEECTTTSCEEEEEESSSE
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC--CceEEEEEcCCCCCEEEEEcCCCc
Confidence            346679999999998444899999999999999877    5555444433  6678889988 8888877766643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.35  E-value=0.0017  Score=46.64  Aligned_cols=69  Identities=12%  Similarity=-0.004  Sum_probs=48.8

Q ss_pred             CCCcccchhhhhCCC-CCCeEEEEeecceEEEEeCCCCc---------eeeEEeeccccccccccccCC--cccccccCC
Q psy8836           6 KLNPGAVEAIAEQPG-SPNHIIVGYSKGLVVLWDRTTNT---------ANQISTMNIVSDRDSFVWKGH--ARLSVKHTG   73 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~-ds~~LlIgg~~G~VVl~d~~~~~---------~~~~~~v~l~~~~es~~W~~~--~~~~~~~~~   73 (118)
                      +.|.++|..|+++|. |.+.|+.|+..|.|.+||..+.+         .+..+.. -...+.++.|...  +.+..+...
T Consensus        54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecC
Confidence            346779999999996 58899999999999999887653         2222211 1144667788877  777766665


Q ss_pred             CC
Q psy8836          74 DS   75 (118)
Q Consensus        74 d~   75 (118)
                      |+
T Consensus       133 dg  134 (351)
T 3f3f_A          133 DG  134 (351)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.34  E-value=0.0043  Score=45.40  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|..+|..++++|. .+.|+.|+..|.|.+||..+.+.+..+...-...+..+.|...++.......|+
T Consensus       147 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          147 AHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            45678999999996 889999999999999999888776544322112345566777776665555443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.34  E-value=0.0045  Score=46.19  Aligned_cols=70  Identities=17%  Similarity=0.108  Sum_probs=54.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      |+.|-++|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|...+.+..+.+.|+.
T Consensus        61 ~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~  130 (319)
T 3frx_A           61 FKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKASMIISGSRDKT  130 (319)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSCEEEEEETTSC
T ss_pred             EeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCCCEEEEEeCCCe
Confidence            4557789999999996 899999999999999999998877655422 144667788888887777776653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.31  E-value=0.0044  Score=46.57  Aligned_cols=68  Identities=19%  Similarity=0.153  Sum_probs=53.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|..+++...+.+.|+
T Consensus       245 ~~h~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          245 SGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTC
T ss_pred             cCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCC
Confidence            346678999999997 889999999999999999988876554321 24566788998888887777664

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.31  E-value=0.012  Score=44.59  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ......++.|...+++..+...|++
T Consensus       236 ~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          236 FETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence            3456778999999997 889999999999999999887665443322 1123456778888887777665643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.29  E-value=0.0025  Score=46.61  Aligned_cols=67  Identities=7%  Similarity=-0.003  Sum_probs=50.7

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCc----eeeEEeeccccccccccccCCcc-cccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNT----ANQISTMNIVSDRDSFVWKGHAR-LSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~----~~~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~~   76 (118)
                      .|.++|..|+++|. .+.|++|+..|.|.+||..+.+    ......-+  ..+.++.|...++ ...+...|+.
T Consensus         9 ~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            9 APKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecC--CceEEEEECCCCCcEEEEEcCCCe
Confidence            36679999999996 8899999999999999887766    43333233  5677888988888 6666665543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.28  E-value=0.0056  Score=46.99  Aligned_cols=67  Identities=10%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccC-CcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKG-HARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~-~~~~~~~~~~d~   75 (118)
                      +.|.+.|..++++|. .++|+.|+..|.|.+||..+.+....+...  ....++.|.. ++++..+.+.|+
T Consensus       162 ~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~  229 (393)
T 1erj_A          162 QGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR  229 (393)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEEEEETTS
T ss_pred             ccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC
Confidence            446778999999997 889999999999999999888776555444  5566677765 666666655554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.013  Score=43.82  Aligned_cols=67  Identities=13%  Similarity=0.264  Sum_probs=46.3

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC-------ceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN-------TANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~-------~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      |.++|..|+++|. .+.|+.|+..|.|.|||....       +.+..+... ...+.++.|..++++..+.+.|++
T Consensus        57 h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~~  130 (330)
T 2hes_X           57 HKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDKS  130 (330)
T ss_dssp             CCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSC
T ss_pred             ccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCE
Confidence            6678999999997 889999999999999987432       122222111 134567889988888887776653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.27  E-value=0.004  Score=45.53  Aligned_cols=70  Identities=9%  Similarity=-0.015  Sum_probs=48.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEe-e---cceEEEEeCCCCceeeEEeeccccccccccccCC---cccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGY-S---KGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGH---ARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg-~---~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~---~~~~~~~~~d~~   76 (118)
                      +.|.++|..|+++|. ..+|+++| .   .|.|.+||..+.+........-...+.++.|...   +++....+.|+.
T Consensus        15 ~~h~~~v~~~~~~p~-~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPC-SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EECSSCEEEEEECTT-SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             cCCCCceEEEEEcCC-CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            347789999999997 55666555 3   7999999998887654433332256678888877   566666665543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.26  E-value=0.0051  Score=46.00  Aligned_cols=41  Identities=12%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST   49 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~   49 (118)
                      |...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+.
T Consensus       290 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          290 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            5678999999996 8899999999999999999988876665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.25  E-value=0.015  Score=45.84  Aligned_cols=70  Identities=10%  Similarity=0.069  Sum_probs=53.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccc---ccccccccCC-cccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVS---DRDSFVWKGH-ARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~---~~es~~W~~~-~~~~~~~~~d~~   76 (118)
                      +.|...|..++++|.....|+.|+..|.|.+||..+.+.+..+... ..   .+.++.|... +++..+.+.|+.
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence            4567789999999985458999999999999999888776554432 12   4667889888 887777665643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.24  E-value=0.0033  Score=48.16  Aligned_cols=69  Identities=9%  Similarity=0.021  Sum_probs=48.5

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccc-ccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARL-SVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~-~~~~~~d~~   76 (118)
                      +.|..+|..|+++|...+.|+.|+..|.|.|||..+.+.....--.  ..+.++.|+.+++. ..+.+.|++
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~--~~V~~v~~sp~~~~llas~s~D~~  323 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR--DFVRDATWSPLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCS--SCEEEEEECSSSTTEEEEEETTSC
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC--CCEEEEEEeCCCCeEEEEEcCCCe
Confidence            4467799999999973345667888899999999988875321112  44667889877764 445555654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.017  Score=44.90  Aligned_cols=41  Identities=12%  Similarity=0.081  Sum_probs=35.4

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST   49 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~   49 (118)
                      .|.+.|..|+++  |.+.|+.|+..|.|.+||..+.+.+..+.
T Consensus       239 ~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          239 GHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             CCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            466789999999  69999999999999999999988776554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.13  E-value=0.0081  Score=45.04  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|-..|..++++|. ...|+.|+..|.|.+||..+.+.+..+... ...+.++.|..+++...+.+.|++
T Consensus        73 ~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~  141 (343)
T 2xzm_R           73 TGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDNRQILSAGAERE  141 (343)
T ss_dssp             CCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSSTTEEEEEETTSC
T ss_pred             ccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCE
Confidence            346678999999996 888899999999999999988776554422 144667889888887776665643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.13  E-value=0.012  Score=46.51  Aligned_cols=67  Identities=18%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|.++|..|+++|. .+.|+.|+..|.|.|||...+ .+..+... ...+.++.|..+++...+...|+
T Consensus        54 ~gh~~~V~~l~fspd-g~~las~~~d~~i~vWd~~~~-~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~  120 (577)
T 2ymu_A           54 TGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQ-LLQTLTGH-SSSVRGVAFSPDGQTIASASDDK  120 (577)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSC-EEEEECCC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCC-EEEEEECC-CCCEEEEEECCCCCEEEEEcCCC
Confidence            447789999999996 889999999999999996544 44333321 14456778888888877666554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0069  Score=43.40  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|.+.|..|+++|. . +|+.|+..|.|.+||..+.+.+..+... ...+.++.|..++++.. ...|++
T Consensus       222 ~~~~~~i~~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~-~~~dg~  288 (313)
T 3odt_A          222 EGHESFVYCIKLLPN-G-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGDIIV-GSSDNL  288 (313)
T ss_dssp             ECCSSCEEEEEECTT-S-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSCEEE-EETTSC
T ss_pred             hcCCceEEEEEEecC-C-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCCEEE-EeCCCc
Confidence            346678999999997 4 7999999999999999998877665544 13567788988888544 444543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.02  E-value=0.0025  Score=46.56  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=40.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCC---------CceeeEEeeccccccccccccCCc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT---------NTANQISTMNIVSDRDSFVWKGHA   65 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~---------~~~~~~~~v~l~~~~es~~W~~~~   65 (118)
                      |.+.|..|+++|  .+.|+.|+..|.|.+||..+         .+.+..+...  ..+.++.|..++
T Consensus       100 ~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~  162 (342)
T 1yfq_A          100 ANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK--NKIFTMDTNSSR  162 (342)
T ss_dssp             CCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC--CCEEEEEECSSE
T ss_pred             CCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC--CceEEEEecCCc
Confidence            677899999999  78999999999999998766         4443332322  556677787666

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.00  E-value=0.006  Score=46.35  Aligned_cols=66  Identities=15%  Similarity=0.166  Sum_probs=49.4

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCce----eeEEeecccc-------------ccccccccCCccc
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA----NQISTMNIVS-------------DRDSFVWKGHARL   67 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~----~~~~~v~l~~-------------~~es~~W~~~~~~   67 (118)
                      +..|...|..++++|...+.|+.|+..|.|.+||..+.+.    +..+...  .             .+.++.|...+++
T Consensus       222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~  299 (447)
T 3dw8_B          222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP--EDPSNRSFFSEIISSISDVKFSHSGRY  299 (447)
T ss_dssp             GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------CCHHHHHTTCEEEEEECTTSSE
T ss_pred             ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC--CCccccccccccCceEEEEEECCCCCE
Confidence            4457778999999998448999999999999999887765    4444433  2             4667788888877


Q ss_pred             ccccC
Q psy8836          68 SVKHT   72 (118)
Q Consensus        68 ~~~~~   72 (118)
                      ..+.+
T Consensus       300 l~~~~  304 (447)
T 3dw8_B          300 MMTRD  304 (447)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            65544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.98  E-value=0.0049  Score=50.76  Aligned_cols=67  Identities=15%  Similarity=0.016  Sum_probs=53.4

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|.+.|..++++|. .+.|++|+..|.|.+||..+.+.+..+... ...+.++.|+.+++...+.+.|+
T Consensus        53 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg  119 (814)
T 3mkq_A           53 VTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDL  119 (814)
T ss_dssp             CCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTS
T ss_pred             cCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCEEEEEEeCCCCEEEEEcCCC
Confidence            46789999999996 899999999999999999888877655422 14467788998888777666554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.97  E-value=0.024  Score=43.40  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|..++++|. .+.|+.|+..|.|.|||..+.+.+..+... ...+.++.|..+++...+.+.|+
T Consensus       125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             BEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCCEEEEecCCC
Confidence            4889999996 889999999999999999988776544322 13466788988888877777664

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.94  E-value=0.011  Score=44.78  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|.++|..++++|. .+.|+.|+..|.|.+||..+.+....+... ...+.++.|...++...+.+.|+
T Consensus        61 ~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSSEEEEESTTS
T ss_pred             cCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCCEEEEeeCCC
Confidence            457889999999996 899999999999999998777665443322 12345666777777766665553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0049  Score=47.14  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCC---Ccee-eEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT---NTAN-QISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~---~~~~-~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|.++|..|+++|.|.+.|+.|+..|.|.|||..+   .... ......-...+.++.|...++...+.+.|+.
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            457789999999995488999999999999998755   3211 0111111256778889888887777766653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.83  E-value=0.018  Score=42.33  Aligned_cols=69  Identities=13%  Similarity=0.203  Sum_probs=46.4

Q ss_pred             CCCcccchhhhhCC-CCCCeEEEEeecceEEEEeCCCCce--eeEEeeccccccccccccCC--cccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQP-GSPNHIIVGYSKGLVVLWDRTTNTA--NQISTMNIVSDRDSFVWKGH--ARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP-~ds~~LlIgg~~G~VVl~d~~~~~~--~~~~~v~l~~~~es~~W~~~--~~~~~~~~~d~   75 (118)
                      +.|.++|..|+++| .+.+.|+.|+..|.|.|||..+.+.  +..+... ...+.++.|..+  +++..+.+.|+
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECCC
Confidence            44778999999975 3467788888999999999877642  2111111 134567788765  66666666554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.013  Score=49.44  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             CCCcccchhhhhCCC-CCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCC--cccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPG-SPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGH--ARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~-ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~--~~~~~~~~~d~~   76 (118)
                      +.|.++|..|+++|. +.+.|+.|+..|.|.+||..+.+........ -...+.++.|..+  +....+.+.|+.
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  124 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  124 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence            457789999999874 3788999999999999998887532111111 1145677889887  777777776653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.80  E-value=0.015  Score=44.99  Aligned_cols=70  Identities=13%  Similarity=0.120  Sum_probs=52.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.+.|..++++|. .+.|+.|+..|.|.+||..+...+..+... ...+.++.|..++++..+.+.|+.
T Consensus       188 ~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             CCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEEEcCCCe
Confidence            3456779999999997 889999999999999999888776554422 123456677777887777766653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.013  Score=45.46  Aligned_cols=65  Identities=3%  Similarity=0.031  Sum_probs=47.6

Q ss_pred             ccchhhhhCCCCCCeE-EEEeecceEEEEeCC--CCceeeEEee-ccccccccccccCCcccccccCCCC
Q psy8836          10 GAVEAIAEQPGSPNHI-IVGYSKGLVVLWDRT--TNTANQISTM-NIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~L-lIgg~~G~VVl~d~~--~~~~~~~~~v-~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ++|..++++|. .+.| +.|+..|.|.+||..  +.+.+..+.. .....+.++.|...++.......|+
T Consensus       103 ~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g  171 (450)
T 2vdu_B          103 SYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG  171 (450)
T ss_dssp             CCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence            37999999997 7775 677788999999988  6766655432 1114566888998888777666554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.011  Score=44.01  Aligned_cols=66  Identities=17%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      |.+.|..|+++|. .+.|++|+..|.|.+||. +.+.+..+... ...+.++.|...++.......|+.
T Consensus       107 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~  172 (425)
T 1r5m_A          107 TTNQVTCLAWSHD-GNSIVTGVENGELRLWNK-TGALLNVLNFH-RAPIVSVKWNKDGTHIISMDVENV  172 (425)
T ss_dssp             -CBCEEEEEECTT-SSEEEEEETTSCEEEEET-TSCEEEEECCC-CSCEEEEEECTTSSEEEEEETTCC
T ss_pred             CCCceEEEEEcCC-CCEEEEEeCCCeEEEEeC-CCCeeeeccCC-CccEEEEEECCCCCEEEEEecCCe
Confidence            4559999999996 899999999999999994 44443333311 145677889888887766665543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.012  Score=49.56  Aligned_cols=71  Identities=7%  Similarity=-0.036  Sum_probs=49.0

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC--ceeeEEeeccccccccccccCC--cccccccCCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN--TANQISTMNIVSDRDSFVWKGH--ARLSVKHTGDSKD   77 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~--~~~~~~~v~l~~~~es~~W~~~--~~~~~~~~~d~~~   77 (118)
                      ++.|.++|..|+++|. .+.|+.|+..|.|.+||..+.  +.+..+... ...+.++.|...  +....+.+.|+..
T Consensus         5 l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            5 ANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ---CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             cccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            4568899999999996 889999999999999987633  333222211 134567788665  7777777766543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.62  E-value=0.028  Score=41.25  Aligned_cols=69  Identities=7%  Similarity=-0.003  Sum_probs=47.5

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC--ceeeEEeeccccccccccccC--CcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN--TANQISTMNIVSDRDSFVWKG--HARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~--~~~~~~~v~l~~~~es~~W~~--~~~~~~~~~~d~~   76 (118)
                      ..|.+.|..++++|. .++|+.|+..|.|.|||..+.  +.+..+... ...+.++.|..  .++...+.+.|++
T Consensus         6 ~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             CSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             cCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            457789999999996 889999999999999987643  333332211 13455677853  3666666666653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.019  Score=49.83  Aligned_cols=94  Identities=13%  Similarity=0.019  Sum_probs=60.0

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCCCCCCcccccee
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKS   87 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~~~p~k~~~~~   87 (118)
                      |+..|..|+++|. .+.|++|+..|.|.|||..+.+....+.-.  ..+.++.|.. +++..+.+.|++..+      -.
T Consensus        16 h~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~--~~V~~l~fsp-g~~L~S~s~D~~v~l------Wd   85 (902)
T 2oaj_A           16 MSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLEDR--SAIKEMRFVK-GIYLVVINAKDTVYV------LS   85 (902)
T ss_dssp             CSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECSSC--CCEEEEEEET-TTEEEEEETTCEEEE------EE
T ss_pred             CCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcCCC--CCEEEEEEcC-CCEEEEEECcCeEEE------EE
Confidence            6789999999997 899999999999999998776654332222  4466777877 775565555542210      00


Q ss_pred             eCCCCCCeeeeeecCChheeeeeeccc
Q psy8836          88 VSPGFQPTCLVQLHPPAAVTSLVLHTE  114 (118)
Q Consensus        88 ~p~G~Q~~~v~q~~Pp~~ITala~~s~  114 (118)
                      ...|   +.+..+..+..||+++++..
T Consensus        86 ~~~~---~~~~~~~~~~~V~~v~~sp~  109 (902)
T 2oaj_A           86 LYSQ---KVLTTVFVPGKITSIDTDAS  109 (902)
T ss_dssp             TTTC---SEEEEEECSSCEEEEECCTT
T ss_pred             CCCC---cEEEEEcCCCCEEEEEECCC
Confidence            0011   12222234567888887653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.51  E-value=0.015  Score=47.85  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|.+.|..++++|. .+.|+.|+..|.|.|||..+.+....+... ...+.++.|..+++...+.+.|++
T Consensus       428 ~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~  495 (694)
T 3dm0_A          428 GHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDNRQIVSASRDRT  495 (694)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCCCEEEEEeCCCE
Confidence            46778999999996 889999999999999999888776554422 144677889888888777776653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.44  E-value=0.015  Score=45.88  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=49.7

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ..|..+|..|+++|. .+.|+.|+..|.|.|||.. .+.+..+... ...+.++.|..++++.++.+.|+
T Consensus       505 ~~h~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~~-~~~~~~~~~h-~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             ECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-SCEEEEEECC-SSCEEEEEECTTSSCEEEEETTS
T ss_pred             eCCCCCEEEEEEcCC-CCEEEEEECcCEEEEEeCC-CCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCC
Confidence            346678999999996 8899999999999999964 4444444321 14456778888888888777664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.41  E-value=0.016  Score=43.37  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCC-CCceeeEEeeccccccccccccCCcccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRT-TNTANQISTMNIVSDRDSFVWKGHARLSVK   70 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~-~~~~~~~~~v~l~~~~es~~W~~~~~~~~~   70 (118)
                      +.|...|..|+++|. .+.|+.|+..|.|.+||.. .......+...  ..+.++.|+..+++...
T Consensus       210 ~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          210 KAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAG--STINQIAFNPKLQWVAV  272 (343)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSSCSEEEECS--SCEEEEEECSSSCEEEE
T ss_pred             cCccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcccceeecCC--CcEEEEEECCCCCEEEE
Confidence            346778999999996 8899999999999999984 33333333333  45677888887766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.016  Score=43.40  Aligned_cols=69  Identities=12%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC----ceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN----TANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~----~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|.++|..++++|. .+.|+.|+..|.|.+||....    +.+..+... ...+.++.|+..+.+..+.+.|+.
T Consensus       104 ~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          104 EGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             C----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTSC
T ss_pred             cCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCCe
Confidence            346778999999996 889999999999999998432    222222211 144667788888888777776653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.014  Score=43.55  Aligned_cols=63  Identities=3%  Similarity=-0.023  Sum_probs=48.2

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee-eEEeeccccccccccccCCcccccccC
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN-QISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~-~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      ...|..++++|. ...|+.|+..|.|.+||..+.+.+ ..+...-...+.++.|..++....+.+
T Consensus       170 ~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          170 DVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             SCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            447999999996 888889999999999999888765 444441125567888988888776655

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.015  Score=44.42  Aligned_cols=67  Identities=16%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccccccc----ccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFV----WKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~----W~~~~~~~~~~~~d~   75 (118)
                      |.+.|..++++|. .+.|+.|+..|.|.+||..+.+.+..+...-...+.++.    |..++++..+.+.|+
T Consensus       213 h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          213 RHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             GGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            4568999999997 899999999999999999988777655432113455663    444566666666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.14  E-value=0.024  Score=43.01  Aligned_cols=63  Identities=10%  Similarity=0.158  Sum_probs=45.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCC-CceeeEEeeccccccc----------------cccccCCcccccccC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT-NTANQISTMNIVSDRD----------------SFVWKGHARLSVKHT   72 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~-~~~~~~~~v~l~~~~e----------------s~~W~~~~~~~~~~~   72 (118)
                      +.|..|+++|. .+.|+.|+. |.|.+||..+ .+.+..+...  ....                ++.|...++...+.+
T Consensus       286 ~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s  361 (447)
T 3dw8_B          286 SSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVH--EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS  361 (447)
T ss_dssp             TCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESC--GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred             ceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecc--ccccccccccccccccccceEEEECCCCCEEEEec
Confidence            38999999995 777777777 9999999986 6655554433  3222                277988888777766


Q ss_pred             CCCC
Q psy8836          73 GDSK   76 (118)
Q Consensus        73 ~d~~   76 (118)
                      .|+.
T Consensus       362 ~dg~  365 (447)
T 3dw8_B          362 YNNF  365 (447)
T ss_dssp             STTE
T ss_pred             cCCE
Confidence            6653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.06  E-value=0.023  Score=42.20  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=46.9

Q ss_pred             CCCCcccchhhhhCC-CCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCC--cccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQP-GSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGH--ARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP-~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~--~~~~~~~~~d~   75 (118)
                      ++.|.++|..|+++| .+.+.|+.|+..|.|.+||..+.+........ -...+.++.|..+  +.+..+...|+
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            345778999999975 45778888999999999998776422111111 1144667788765  55655555554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.00  E-value=0.031  Score=41.46  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCCCcccchhhhhCCCC---CCeEEEEeecceEEEEeCCCC---c-eeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGS---PNHIIVGYSKGLVVLWDRTTN---T-ANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~d---s~~LlIgg~~G~VVl~d~~~~---~-~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|...|..++++|..   .+.|+.|+..|.|.|||..+.   + ....+. .....+.++.|...++...+.+.|+.
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            34577789999999973   367888999999999987652   1 111111 11145667889998888877776653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.99  E-value=0.027  Score=40.46  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEe--ecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGY--SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg--~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +...|..+.++|. .+.++++.  ..|.|.+||..+.+.+..+... ...+.++.|+.++++..+.+.|+
T Consensus       239 ~~~~v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          239 AHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             CSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTT
T ss_pred             ceeeeeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCC
Confidence            3456788889997 66666654  5799999999998887665532 14567888999999888877675

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=94.92  E-value=0.021  Score=46.59  Aligned_cols=69  Identities=12%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEee------ccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTM------NIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v------~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|...|..++++|. .+.|+.|+..|.|.|||..+.+.+..+..      .-...+.++.|..+++...+.+.|+
T Consensus       187 ~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence            446778999999996 88999999999999999887776544421      1113456788988888887777665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.81  E-value=0.04  Score=39.49  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEE
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS   48 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~   48 (118)
                      |...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+
T Consensus        66 ~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           66 PGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             TTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4568999999997 899999999999999999888766443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.79  E-value=0.083  Score=40.27  Aligned_cols=61  Identities=8%  Similarity=0.055  Sum_probs=46.8

Q ss_pred             cchhhhhCCCCCCeEEEEee--cceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYS--KGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~--~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .|..+++.|. .+.|++|+.  .|.|-|||..+.+.+..+.-.  .++.++.|..++++..+...+
T Consensus       135 ~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~--~~V~~v~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          135 YTKLVYISRE-GTVAAIASSKVPAIMRIIDPSDLTEKFEIETR--GEVKDLHFSTDGKVVAYITGS  197 (365)
T ss_dssp             CEEEEEECTT-SSCEEEEESCSSCEEEEEETTTTEEEEEEECS--SCCCEEEECTTSSEEEEECSS
T ss_pred             CEEEEEEcCC-CCEEEEEECCCCCEEEEeECCCCcEEEEeCCC--CceEEEEEccCCceEEeccce
Confidence            3667888996 788888774  489999999998877655544  678889999999887665533

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=94.70  E-value=0.03  Score=43.02  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccccccccc--CCcccccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWK--GHARLSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~--~~~~~~~~~~~d~   75 (118)
                      ++.|.++|..++++|. . .|+.|+..|.|.+||..+.+.+..+... ...+.++.|.  ..++...+.+.|+
T Consensus       158 ~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             ECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEEESSSCEEEEEEETTS
T ss_pred             EeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCC-CCccEEEEEecCCCCCEEEEEcCCC
Confidence            3457789999999986 3 9999999999999999888776554421 1344555565  4445555555454

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.69  E-value=0.1  Score=40.08  Aligned_cols=64  Identities=19%  Similarity=0.214  Sum_probs=43.0

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|.++|..+++   |.+.|++|+..|.|.+||..+.+.+..+... ...+.++.|.  +....+.+.|+
T Consensus       170 ~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~s~s~dg  233 (435)
T 1p22_A          170 TGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHH-CEAVLHLRFN--NGMMVTCSKDR  233 (435)
T ss_dssp             CCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCC-CSCEEEEECC--TTEEEEEETTS
T ss_pred             cCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC-CCcEEEEEEc--CCEEEEeeCCC
Confidence            346678888887   4789999999999999999888776554322 1334556664  33445555454

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.62  E-value=0.02  Score=47.13  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      +.|.+.|..|+++|. .+.|+.|+..|.|.+||..+.+.+..+..+  ..+.++.|..++.+....
T Consensus       558 ~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          558 AGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSEEEEE
T ss_pred             cCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEE
Confidence            346778999999996 889999999999999999888776544444  556677787776655443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.37  E-value=0.015  Score=44.68  Aligned_cols=69  Identities=10%  Similarity=-0.005  Sum_probs=49.9

Q ss_pred             CCCCcccchhhhhCC-------CCCCeEEEEeecceEEEEeCCCCcee-eEEeeccccccccccccCCcc-cccccCCCC
Q psy8836           5 YKLNPGAVEAIAEQP-------GSPNHIIVGYSKGLVVLWDRTTNTAN-QISTMNIVSDRDSFVWKGHAR-LSVKHTGDS   75 (118)
Q Consensus         5 y~~~p~aV~~I~~cP-------~ds~~LlIgg~~G~VVl~d~~~~~~~-~~~~v~l~~~~es~~W~~~~~-~~~~~~~d~   75 (118)
                      ++.|-+.|..|+++|       .|.+.|+-|+..+.|.|||..+...+ ..+...  ....++.|+..++ +..+...|+
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTS
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCC
Confidence            455778999999987       34678888999999999998665443 333444  6777889987764 455555454

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.13  E-value=0.048  Score=47.42  Aligned_cols=67  Identities=7%  Similarity=-0.031  Sum_probs=52.2

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|.++|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|..+++...+.+.|+
T Consensus       613 ~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~  679 (1249)
T 3sfz_A          613 PHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAH-EDEVLCCAFSSDDSYIATCSADK  679 (1249)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccC-CCCEEEEEEecCCCEEEEEeCCC
Confidence            46789999999996 889999999999999999988876554422 13456778888888777766554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.04  E-value=0.082  Score=45.94  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      ..|.++|..++++|. .+.|+.|+..|.|.+||..+.+......-.  ..+.++.|...+.+..
T Consensus      1000 ~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~ 1060 (1249)
T 3sfz_A         1000 VGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYVFLQAHQ--ETVKDFRLLQDSRLLS 1060 (1249)
T ss_dssp             CCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEECCBCCS--SCEEEEEECSSSEEEE
T ss_pred             ccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEE
Confidence            346779999999997 899999999999999999888765332222  4556677777666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=93.82  E-value=0.076  Score=43.25  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ++.|.+.|..++++|.....|+.|+..|.|.+||..+.+....+... ...+.++.|..++++..+.+.|+.
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg~~las~s~D~~  213 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGT  213 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-cCceEEEEECCCCCEEEEEECCCc
Confidence            34577799999999974457999999999999998776655433321 133567778888888777766653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.80  E-value=0.1  Score=38.84  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             ccchhhhhCCCCCCeEEEEee-cceEEEEeCCCCceeeEEeeccccccccccccCCcccc-cccCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYS-KGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS-VKHTGD   74 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~-~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~-~~~~~d   74 (118)
                      ..|..++++|. .+.|++++. .|.|.+||..+.+.+..+...  ....++.|..+++.. ++...|
T Consensus        74 ~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           74 SSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT
T ss_pred             CCccceEECCC-CCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCC
Confidence            47888999996 777877775 499999999999887666655  667788898888754 444433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.77  E-value=0.065  Score=41.16  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeE
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQI   47 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~   47 (118)
                      |...|..|+++|. .+.|++|+..|.|.|||..+.+.+..
T Consensus       146 ~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          146 PGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4458999999996 89999999999999999988766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=93.64  E-value=0.051  Score=42.98  Aligned_cols=67  Identities=7%  Similarity=0.041  Sum_probs=43.5

Q ss_pred             cccchhhhhCCCCCCeEEE----EeecceEEEEeCCCC--------ceeeEEee--ccccccccccccCC-cccccccCC
Q psy8836           9 PGAVEAIAEQPGSPNHIIV----GYSKGLVVLWDRTTN--------TANQISTM--NIVSDRDSFVWKGH-ARLSVKHTG   73 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlI----gg~~G~VVl~d~~~~--------~~~~~~~v--~l~~~~es~~W~~~-~~~~~~~~~   73 (118)
                      ++.|..|+++|. .+.|+|    |+..|.|.|||..+.        +.+..+..  .-...+.++.|+.. +.+..+.+.
T Consensus        92 ~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            456999999997 788885    455899999986543        22111111  00145678889887 666666666


Q ss_pred             CCC
Q psy8836          74 DSK   76 (118)
Q Consensus        74 d~~   76 (118)
                      |++
T Consensus       171 Dg~  173 (434)
T 2oit_A          171 DGS  173 (434)
T ss_dssp             TSC
T ss_pred             CCe
Confidence            654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=93.63  E-value=0.12  Score=39.69  Aligned_cols=66  Identities=8%  Similarity=0.030  Sum_probs=48.0

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .|...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|.  ++...+.+.|++
T Consensus       308 ~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          308 GHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSE
T ss_pred             CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCc
Confidence            46678999999996 889999999999999999888876554322 1334556665  455566665643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.57  E-value=0.078  Score=40.75  Aligned_cols=65  Identities=15%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEee----ccccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTM----NIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v----~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      |..+|..++++   .+.|+.|+..|.|.+||..+.+.+..+..    .....+.++.|...+......+.|+
T Consensus       361 ~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          361 HQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             CSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             CCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            55688888885   46899999999999999999988765521    1113456677888887777766564

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.11  E-value=0.072  Score=45.32  Aligned_cols=61  Identities=16%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCce-------eeEEeecc---ccccccccccCCcccccccCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA-------NQISTMNI---VSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~-------~~~~~v~l---~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      +|..++++|. .+.|++|+..|.|.|||..++..       +..+....   ...+.+++|..++ + +.++.|
T Consensus       131 sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L-aass~D  201 (588)
T 2j04_A          131 TYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L-VAALSN  201 (588)
T ss_dssp             CEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E-EEEETT
T ss_pred             cEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-E-EEEeCC
Confidence            6999999996 99999999999999999887752       33333221   1356788899888 4 455545

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.07  E-value=0.13  Score=42.09  Aligned_cols=99  Identities=9%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             CCcccchhhh--hCCCCC-CeEEEEeecceEEEEeCCCCceeeEEeeccc-cccccccccCCcccccccCCCCCCCCCcc
Q psy8836           7 LNPGAVEAIA--EQPGSP-NHIIVGYSKGLVVLWDRTTNTANQISTMNIV-SDRDSFVWKGHARLSVKHTGDSKDKEPSK   82 (118)
Q Consensus         7 ~~p~aV~~I~--~cP~ds-~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~-~~~es~~W~~~~~~~~~~~~d~~~~~p~k   82 (118)
                      .|-..|..|+  +.| |. ..|+-|+..|.|.|||..+.+....+..... ..+.++.|...++..++.+.|+..+    
T Consensus       306 ~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~----  380 (524)
T 2j04_B          306 VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLR----  380 (524)
T ss_dssp             CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEE----
T ss_pred             cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEE----
Confidence            4667899884  444 34 6788888999999999987665433332211 1245778988888877766553211    


Q ss_pred             ccceeeCCCCCCeeeeeecCChheeeeeeccc
Q psy8836          83 ALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTE  114 (118)
Q Consensus        83 ~~~~~~p~G~Q~~~v~q~~Pp~~ITala~~s~  114 (118)
                        -.-.-.|+....+.  ---..|++||.+..
T Consensus       381 --lwd~~~~~~~~~l~--gH~~~V~sva~Sp~  408 (524)
T 2j04_B          381 --AVPSRAAFAVHPLV--SRETTITAIGVSRL  408 (524)
T ss_dssp             --EEETTCTTCCEEEE--ECSSCEEEEECCSS
T ss_pred             --EEECcccccceeee--cCCCceEEEEeCCC
Confidence              00111233222111  13457888888653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=92.51  E-value=0.22  Score=37.01  Aligned_cols=63  Identities=17%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             ccchhhhhCCCCCCeEEEEe---ecceEEEEeCCCCceeeEEeeccccccccccccCCcccc-cccCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGY---SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS-VKHTGDS   75 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg---~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~-~~~~~d~   75 (118)
                      ..+..++++|. .+.|++++   ..|.|.+||..+.+.+..+...  ....++.|..+++.. ++...|+
T Consensus       200 ~~~~~~~~~~~-g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~  266 (391)
T 1l0q_A          200 AAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXN  266 (391)
T ss_dssp             SEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCccceEECCC-CCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCC
Confidence            46778899996 88888888   5799999999988887666555  556778898888754 5544443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.41  E-value=0.13  Score=35.89  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCC-CceeeEEeeccccccccccccCCcccccccC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTT-NTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~-~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      +.+.|..++++|. .+.|+++ ..|.|.+||..+ .+........-...+.++.|..+++......
T Consensus        40 ~~~~v~~~~~spd-g~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           40 TPELFEAPNWSPD-GKYLLLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             ESSCCEEEEECTT-SSEEEEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred             CCcceEeeEECCC-CCEEEEE-cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEE
Confidence            4568999999996 6666665 489999999988 6665332211012345678988888665544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=92.24  E-value=0.37  Score=34.58  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeec-ceEEEEeCC--CCceeeEEeeccccccccccccCCcccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSK-GLVVLWDRT--TNTANQISTMNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~-G~VVl~d~~--~~~~~~~~~v~l~~~~es~~W~~~~~~~   68 (118)
                      +.+.+..|+++|. .+.|++++.. |.|.+|+..  +.+..............++.|...++..
T Consensus        36 ~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l   98 (343)
T 1ri6_A           36 VPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFV   98 (343)
T ss_dssp             CSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEE
T ss_pred             cCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEE
Confidence            3457888999996 7888888887 999999876  4443222222211455677888888744

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=92.13  E-value=0.059  Score=41.36  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCce
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTA   44 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~   44 (118)
                      +..+|..++++|.+.++|+.|+..|.|.+||..+.+.
T Consensus       185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence            4568899999999778999999999999999877654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=91.98  E-value=0.52  Score=36.08  Aligned_cols=61  Identities=18%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ..|..++.   |.++|+.|+..|.|.+||..+.+....+... ...+.++.|  +++...+.+.|+.
T Consensus       134 ~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~sg~~dg~  194 (435)
T 1p22_A          134 KGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY--DERVIITGSSDST  194 (435)
T ss_dssp             CCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSC
T ss_pred             CcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE--CCCEEEEEcCCCe
Confidence            34555554   4789999999999999999888876554422 134556677  4566666665654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=90.92  E-value=0.21  Score=38.30  Aligned_cols=63  Identities=14%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec--cccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN--IVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~--l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      |...|..++.+   .+.|++|+..|.|.+||..+.+.+..+...  -...+.++.|.  ++...+.+.|+
T Consensus       318 ~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          318 HQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             CCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             CcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence            33445555442   557888888888888888777766554421  11334556664  45555555554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=90.55  E-value=0.43  Score=35.93  Aligned_cols=59  Identities=20%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             ccchhhhhCCCCCCeEEEEeec---------------ceEEEEeCCCCceeeEEeeccccccccccccCCccccccc
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSK---------------GLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKH   71 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~---------------G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~   71 (118)
                      ..+..++++|. .+.|+++...               |.|.+||..+.+.+..+...  ....++.|..+++.....
T Consensus       345 ~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          345 DKPNTIALSPD-GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             SSEEEEEECTT-SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEcCC-CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCCCEEEEE
Confidence            46778999996 7788888773               69999999998887766654  566788888887765433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=90.34  E-value=0.51  Score=34.03  Aligned_cols=58  Identities=9%  Similarity=0.010  Sum_probs=42.5

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      .+..+++.|.|.+.|+++  .+.|.+||..+.+.+..+...  ....++.|..+++.....+
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEES
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEec
Confidence            455677788447888888  899999999999887766655  5567788887776444333

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=89.57  E-value=0.3  Score=36.78  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             cccchhhhhCCCCCCeEEEE-eecceEEEEeCCCCceeeEEeeccccccccccccCCccccc
Q psy8836           9 PGAVEAIAEQPGSPNHIIVG-YSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIg-g~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      ++.+..++++|. .+.|+++ +..|.|.+||..+.+.+..+...  ....++.|..+++...
T Consensus       302 ~~~~~~~~~~~~-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          302 PGNKRHIVSGNT-ENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EECEEEEEECSS-TTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEE
T ss_pred             CCCcceEEECCC-CCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEE
Confidence            456778999997 6666555 77899999999988887666544  6667888988887443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.51  E-value=0.88  Score=31.46  Aligned_cols=64  Identities=9%  Similarity=-0.026  Sum_probs=43.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeec-----------ceEEEEeCCCCceeeEEee-ccccccccccccCCcccccccC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSK-----------GLVVLWDRTTNTANQISTM-NIVSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~-----------G~VVl~d~~~~~~~~~~~v-~l~~~~es~~W~~~~~~~~~~~   72 (118)
                      +...+..++++|. .++|++++..           +.|.+||..+.+....... .-.....++.|..+++......
T Consensus       215 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          215 SAYGDWFPHPSPS-GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             CSEEEEEEEECTT-SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             CCcccCCeEECCC-CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence            4567888999996 8888888765           6799999988766433322 1113466788888877654443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=89.14  E-value=0.86  Score=32.55  Aligned_cols=54  Identities=13%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             cchhhhhCCCCCCeEEEEe------------ecceEEEEeCCCCceeeEEeeccccccccccccCCccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGY------------SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARL   67 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg------------~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~   67 (118)
                      .+..+++.|. .+.|+++.            ..+.|.+||..+.+.+..+...  ....++.|..+++.
T Consensus        83 ~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~  148 (337)
T 1pby_B           83 SLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSK  148 (337)
T ss_dssp             CTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSC
T ss_pred             cccceEECCC-CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCE
Confidence            5778889996 78888886            4699999999888877665554  55677778777763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=87.71  E-value=1  Score=32.13  Aligned_cols=55  Identities=9%  Similarity=-0.039  Sum_probs=41.4

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVK   70 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~   70 (118)
                      .+..|++.|. .+.|+++  .+.|.+||..+.+.+..+...  ....++.|..+++....
T Consensus       242 ~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          242 FYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             CEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEE
T ss_pred             ceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEE
Confidence            3445889995 7888887  799999999998887666655  56677888887774433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=87.66  E-value=0.41  Score=36.03  Aligned_cols=34  Identities=9%  Similarity=0.055  Sum_probs=30.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTN   42 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~   42 (118)
                      |.+.|..++++|. .+.|+.|+..|.|.+||..+.
T Consensus       239 h~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          239 DRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCSCEEEEEECTT-SCEEEEEETTCEEEEEESSCC
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCEEEEEEccCC
Confidence            7789999999996 899999999999999987654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.12  E-value=0.75  Score=35.64  Aligned_cols=59  Identities=8%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecc---eEEEEeCCCCceeeEEeeccccccccccccCCccccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKG---LVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G---~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      +.+.|..++++|. .++|+.+...+   .|.+||..+.+........  ....++.|..+++...
T Consensus       177 ~~~~v~~~~~Spd-g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~--~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          177 SPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             ESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEEEEECCS--SCEEEEEECTTSSEEE
T ss_pred             CCCcceeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCcEEEeecCC--CcccCEEEcCCCCEEE
Confidence            4567889999996 78888887664   9999999888775433222  4456778988887544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=86.62  E-value=0.47  Score=40.35  Aligned_cols=63  Identities=13%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-c---ccccccccccCCcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-I---VSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l---~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      ..|..++|.|. ..+|.+++..|.|.|||..+  .+..+. . .   .....+++|..+|+.-...+.|++
T Consensus        86 ~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt  152 (588)
T 2j04_A           86 CYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE  152 (588)
T ss_dssp             CCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence            47999999996 88999999999999998543  222222 2 0   013678899999998877776654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=86.51  E-value=0.69  Score=33.15  Aligned_cols=55  Identities=15%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             ccchhhhhCCCCCCeEEEEee-cceEEEEeC---CCCceeeEEeeccccccccccccCCccc
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYS-KGLVVLWDR---TTNTANQISTMNIVSDRDSFVWKGHARL   67 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~-~G~VVl~d~---~~~~~~~~~~v~l~~~~es~~W~~~~~~   67 (118)
                      +.+..|+++|. .+.|++++. .|.|.+||.   .+.+.+..+...  ....++.|...++.
T Consensus        84 ~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           84 GSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDNRT  142 (343)
T ss_dssp             SCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTSSE
T ss_pred             CCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCC--CCceEEEECCCCCE
Confidence            46788899997 777877765 789999988   333444333333  45667788877763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=85.55  E-value=1.3  Score=31.90  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=32.0

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEee
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTM   50 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v   50 (118)
                      .+..+++.|. .++|++++..|.|.+||..+.+.+..+.+
T Consensus       296 ~~~~~~~s~d-g~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          296 TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             CCCEEEECSS-SSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CccceEECCC-CCEEEEecCCCeEEEEeccccceeeeeec
Confidence            4667889996 88899999999999999999887765443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=85.24  E-value=1  Score=36.77  Aligned_cols=63  Identities=6%  Similarity=-0.077  Sum_probs=45.7

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|..++++|. ...|+.|+..+.|.|||..+...+..+... ...+.++.|..+++...+.+.|+
T Consensus       357 ~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          357 NLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             SCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEEEECCSSCCBCEEEETTT
T ss_pred             cccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecC-CCceEEEEeCCCCCeEEEEECCC
Confidence            4778999996 677888888999999998876654333321 14566778888888776666665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=84.65  E-value=1.8  Score=31.22  Aligned_cols=59  Identities=17%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             cchhhhhCCCCCCeEEEEee-------cceEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYS-------KGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHT   72 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~-------~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~   72 (118)
                      .+..+++.|. .+.|.++..       .|.|.+||..+.+.+..+...  ....++.|..+++ +.+...
T Consensus        42 ~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~  108 (353)
T 3vgz_A           42 GAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNT  108 (353)
T ss_dssp             SEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEET
T ss_pred             CccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEec
Confidence            4567888886 788888874       578999999999888776665  5667778887777 545444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=84.53  E-value=1.4  Score=31.68  Aligned_cols=55  Identities=7%  Similarity=-0.006  Sum_probs=40.8

Q ss_pred             hhhCCCCCCeEEEEeecc---eEEEEeCCCCceeeEEeeccccccccccccCCcc-cccccC
Q psy8836          15 IAEQPGSPNHIIVGYSKG---LVVLWDRTTNTANQISTMNIVSDRDSFVWKGHAR-LSVKHT   72 (118)
Q Consensus        15 I~~cP~ds~~LlIgg~~G---~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~-~~~~~~   72 (118)
                      ++++|. .++|++++..|   .|.+||..+.+.+..+...  ....++.|..+++ +.+...
T Consensus        89 ~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           89 VDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             EEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCEEEEEE
T ss_pred             eEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEEEEEec
Confidence            889996 77788666663   9999999998887665554  5567788988887 444444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=82.39  E-value=2.4  Score=30.56  Aligned_cols=55  Identities=4%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             cchhhhhCCCCCCeEEEEe--ecceEEEEeCCCCceeeEEe-eccccccccccccCCcccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGY--SKGLVVLWDRTTNTANQIST-MNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg--~~G~VVl~d~~~~~~~~~~~-v~l~~~~es~~W~~~~~~~   68 (118)
                      .+..+.++|. .++|.++.  ..+.|.+||..+.+.+..+. ..  ....++.|..+++..
T Consensus       142 ~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          142 QPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG--KMSTGLALDSEGKRL  199 (353)
T ss_dssp             EEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCC--TTCCCCEEETTTTEE
T ss_pred             CCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCC--CccceEEECCCCCEE
Confidence            3567889996 78888887  37889999999988876555 23  346677887777644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=81.49  E-value=2.5  Score=30.32  Aligned_cols=58  Identities=12%  Similarity=0.022  Sum_probs=42.0

Q ss_pred             cchhhhhCCCCCCeEEEEee-cceEEEEeCCCCce---eeEEeeccccccccccccCCcc-ccccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGYS-KGLVVLWDRTTNTA---NQISTMNIVSDRDSFVWKGHAR-LSVKH   71 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~-~G~VVl~d~~~~~~---~~~~~v~l~~~~es~~W~~~~~-~~~~~   71 (118)
                      ....+++.|. .+.|++++. .+.|.+||..+.+.   +..+...  ....++.|..+++ +.+..
T Consensus       177 ~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          177 RPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             SEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEEC
T ss_pred             CccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEE
Confidence            4567889996 777877774 78999999988877   5555544  5567788888887 44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.51
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.37
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.16
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.11
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.06
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.99
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.53
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.51
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.28
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.07
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.5
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.5
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.41
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.03
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	94.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.03
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.68
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.49
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.49
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.28
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.25
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	91.99
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	91.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.7
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	88.56
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	88.24
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	87.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.61
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	84.04
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	81.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	80.3

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=6.4e-05  Score=52.42  Aligned_cols=68  Identities=10%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +.|-++|..|+++|. ...|+.|+..|.|.|||..+.+.+..+... ...+.++.|...++.....+.|+
T Consensus        52 ~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          52 RGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEEecc-cccEEeeEeeccceeeeeecccc
Confidence            458889999999996 889999999999999999998887665542 13467778888888776665553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=8.2e-05  Score=50.73  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|...|..+.++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+.++.|..++++.++.+.|+
T Consensus       245 ~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         245 GHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             CCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCCCCEEEEEECCC-CCEEEEEECCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCC
Confidence            35678999999996 888999999999999999988887666542 14567788998888888777664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.16  E-value=0.0003  Score=51.46  Aligned_cols=68  Identities=15%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec-cccccccccccCCcccccccCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN-IVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~-l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      .|-++|..|+++|. .++|+.|+..|.|.|||..+.+....+... ....+.++.|..+++.+.....|+
T Consensus        49 gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          49 EHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             CCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCEEEEEECCC-CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccC
Confidence            46679999999996 889999999999999998776654333321 114567788998888887766554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00068  Score=45.91  Aligned_cols=66  Identities=11%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      .|-++|..|+++|. .+.|+.|+..|.|.|||..+.+.+..+... ...+.++.|...+........+
T Consensus        15 GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          15 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCC-CCcEEEEeeecccccccccccc
Confidence            37789999999996 888999999999999999888877655432 1345667787777766554433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00061  Score=48.89  Aligned_cols=95  Identities=14%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCCCCCCcccccee
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSKDKEPSKALLKS   87 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~~~~p~k~~~~~   87 (118)
                      +.+.|..|+++|. .+.|++|+..|.|.+||..+.+......-+  ..+.++.|...+++.++.+.|+...      -..
T Consensus       223 ~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~v~~s~~g~~l~s~s~Dg~i~------iwd  293 (337)
T d1gxra_         223 FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLN------AWR  293 (337)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEE------EEE
T ss_pred             cccceEEEEEccc-ccccceeccccccccccccccccccccccc--cccceEEECCCCCEEEEEeCCCeEE------EEE
Confidence            4568899999997 899999999999999999888775433333  4567788988888888777664322      111


Q ss_pred             eCCCCCCeeeeeecCChheeeeeeccc
Q psy8836          88 VSPGFQPTCLVQLHPPAAVTSLVLHTE  114 (118)
Q Consensus        88 ~p~G~Q~~~v~q~~Pp~~ITala~~s~  114 (118)
                      ..-|   +.+.+..-...|++++++..
T Consensus       294 ~~~~---~~~~~~~~~~~v~~~~~s~d  317 (337)
T d1gxra_         294 TPYG---ASIFQSKESSSVLSCDISVD  317 (337)
T ss_dssp             TTTC---CEEEEEECSSCEEEEEECTT
T ss_pred             CCCC---CEEEEccCCCCEEEEEEeCC
Confidence            1222   22333445567888887653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.99  E-value=0.0005  Score=47.64  Aligned_cols=66  Identities=9%  Similarity=0.072  Sum_probs=52.4

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +...|..++++|. .+.|++|+..|.|.+||..+.+.+..+... ...+.++.|..++++..+.+.|+
T Consensus       269 ~~~~i~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         269 IICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             CCSCEEEEEECSS-SCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccCceEEEEECCC-CCEEEEEECCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEccCC
Confidence            4457899999996 889999999999999999888887665532 14567888998888887777664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0019  Score=46.19  Aligned_cols=65  Identities=14%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      +...|..++++|. ...+++|+..|.|.+||..+.+.+..+...  ..+.++.|...+++......|+
T Consensus       182 ~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         182 HTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccc-ccccccccccccccccccccceeecccccc--cceEEEEEcccccccceecccc
Confidence            5568889999987 899999999999999999998887666555  7788888988888877666554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.62  E-value=0.00075  Score=46.87  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVK   70 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~   70 (118)
                      ..|-++|..|+++|. .+.|+.|+..|.|.+||..+.+....+.-.-...+.++.|..++++...
T Consensus         9 ~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~   72 (299)
T d1nr0a2           9 YGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV   72 (299)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE
T ss_pred             CCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc
Confidence            347789999999996 8889899999999999998876654332110123456677777766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.61  E-value=0.0011  Score=46.02  Aligned_cols=65  Identities=12%  Similarity=0.180  Sum_probs=46.7

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .+..++++|. .+.|++|+..|.|.+||..+.+........-...+.++.|..+++.....+.|+.
T Consensus       138 ~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         138 NSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             CEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566788886 8899999999999999998776654332221245677888888887776665543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.53  E-value=0.0014  Score=47.20  Aligned_cols=67  Identities=16%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             CCCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc-ccccccccccCCcccccccC
Q psy8836           5 YKLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI-VSDRDSFVWKGHARLSVKHT   72 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l-~~~~es~~W~~~~~~~~~~~   72 (118)
                      |..|...|..++++|. .+.|+.|+..|.|.|||..+.+......... ...+.++.|..+++.....+
T Consensus        54 ~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             EcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccc
Confidence            4457789999999996 8899999999999999987775442222221 14567788988888765544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00081  Score=45.89  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeE
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQI   47 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~   47 (118)
                      +-++|..|+++|. .+.|+.|+..|.|.+||..+.+.+..
T Consensus       250 ~~~~v~~l~~sp~-~~~lasg~~Dg~v~vWD~~~~~~l~~  288 (342)
T d1yfqa_         250 LAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             SCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ccccceeEEecCC-ccEEEEECCCCEEEEEECCCCcEEEE
Confidence            4457889999997 89999999999999999998877643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.28  E-value=0.0024  Score=46.46  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc-ccccccccccCCcccccccCCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI-VSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l-~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      .+|..++++|. -+.|++|+..|.|.|||..+++........= ...+.++.|..++++..+.+.|++
T Consensus         8 ~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~   74 (371)
T d1k8kc_           8 EPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN   74 (371)
T ss_dssp             SCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            46999999996 8888899999999999988776443322210 135677889888887777665643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.009  Score=42.32  Aligned_cols=67  Identities=4%  Similarity=-0.036  Sum_probs=45.8

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc-----------------cccccccccCCcccccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV-----------------SDRDSFVWKGHARLSVK   70 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~-----------------~~~es~~W~~~~~~~~~   70 (118)
                      |-.+|..|++.|. .+.|+. |..|.|.|||..+.+.+..+...-.                 ..+.++.|..++++..+
T Consensus        61 H~~~V~~l~fs~d-g~~las-g~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSND-GEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECTT-SSEEEE-ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCC-CCEEEE-EeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5679999999995 555555 5689999999988776644322100                 12346778888888877


Q ss_pred             cCCCCC
Q psy8836          71 HTGDSK   76 (118)
Q Consensus        71 ~~~d~~   76 (118)
                      .+.|+.
T Consensus       139 ~~~dg~  144 (388)
T d1erja_         139 GAEDRL  144 (388)
T ss_dssp             EETTSC
T ss_pred             cccccc
Confidence            776653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.75  E-value=0.0085  Score=42.88  Aligned_cols=65  Identities=12%  Similarity=0.282  Sum_probs=45.1

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecc--ccccccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNI--VSDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l--~~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      |-+.|..|+++|. .+.|+.|+..|.|.|||..+.+.++.+...-  ....-++.|.+.  ..+..+.||
T Consensus       237 h~~~V~~~~~s~~-~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~--~l~s~s~dG  303 (311)
T d1nr0a1         237 HSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANG  303 (311)
T ss_dssp             SSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS--CEEEEETTC
T ss_pred             ccccccccccCCC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC--EEEEEECCC
Confidence            5568999999996 8899999999999999999998876655441  112234566543  334444343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.50  E-value=0.0062  Score=42.41  Aligned_cols=64  Identities=8%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecc--eEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKG--LVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G--~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      |.+.|..++|.|. .+.|++++.+.  .|.+||..+++..+.....  ..+..+.|..+++...+...+
T Consensus        41 ~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~  106 (360)
T d1k32a3          41 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENL--GNVFAMGVDRNGKFAVVANDR  106 (360)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCC--CSEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC--ceEEeeeecccccccceeccc
Confidence            6779999999996 88888877663  7889999888776443333  555677888888877655544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0083  Score=42.52  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccc------ccccccCCcccccccCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDR------DSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~------es~~W~~~~~~~~~~~~d~   75 (118)
                      |...|..++++|. .+.|+.|+..|.|.+||..+.+.+..+... ...+      .+..|+.++++.++.+.|+
T Consensus       307 ~~~~v~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H-~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         307 HKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             CSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             ccceEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            4457889999996 788888999999999999988877655432 0111      2334666677777666564

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.004  Score=42.25  Aligned_cols=65  Identities=8%  Similarity=-0.008  Sum_probs=42.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe--eccccccccccccCC-cccccccCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST--MNIVSDRDSFVWKGH-ARLSVKHTGDS   75 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~--v~l~~~~es~~W~~~-~~~~~~~~~d~   75 (118)
                      ..|..|+++|. .+.|++|+..|.|.|||..+......+.  ..-...+.+++|... +.+..+.+.|+
T Consensus        12 d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_          12 DYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             SCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            38999999996 8999999999999999875442211111  111145667788654 44455555454

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.017  Score=42.06  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=50.1

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecc---eEEEEeCCCCceeeEEeeccc------------cccccccccCCcccccc
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKG---LVVLWDRTTNTANQISTMNIV------------SDRDSFVWKGHARLSVK   70 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G---~VVl~d~~~~~~~~~~~v~l~------------~~~es~~W~~~~~~~~~   70 (118)
                      ..|..+|..|+++|. .+.|+.|+..+   .|-+||..+.+.+..+.....            ..+.++.|..++++.++
T Consensus       228 ~~h~~~V~~l~~spd-g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             -CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccccceEEEcccccc-cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            447789999999996 88888887664   689999988877654432100            22456778888888888


Q ss_pred             cCCCCC
Q psy8836          71 HTGDSK   76 (118)
Q Consensus        71 ~~~d~~   76 (118)
                      .+.|++
T Consensus       307 ~s~D~~  312 (393)
T d1sq9a_         307 AGWDGK  312 (393)
T ss_dssp             EETTSE
T ss_pred             ECCCCE
Confidence            877754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.02  Score=40.65  Aligned_cols=69  Identities=10%  Similarity=0.025  Sum_probs=44.7

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeecccccccccccc---CCcccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWK---GHARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~---~~~~~~~~~~~d~~   76 (118)
                      .+...|..|+++|.....|+.|+..|.|.+||..+.+.+..+... .....+..|.   .++++..+.+.|+.
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~-~~~v~~~~~s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-QEPVQGGIFALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-TBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccccccccccc-ccccccceeeeeccCCCEEEEEeCCCe
Confidence            345679999999974555666888899999999888877554322 0222333332   34566666666653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.02  Score=37.90  Aligned_cols=63  Identities=17%  Similarity=0.321  Sum_probs=41.6

Q ss_pred             CcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +-..|..++  + |.++|+.|+..|.|.|||..+.+.+..+... ...+.++.|.  +++..+.+.|+.
T Consensus        14 ~~~~V~c~~--~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~v~~~--~~~l~s~s~D~~   76 (293)
T d1p22a2          14 TSKGVYCLQ--Y-DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQYD--ERVIITGSSDST   76 (293)
T ss_dssp             SCCCEEEEE--C-CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEECC--SSEEEEEETTSC
T ss_pred             CCCCEEEEE--E-cCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCEeeeecc--cceeeccccccc
Confidence            334565544  5 4788999999999999999988887665432 1334566663  456666655543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.017  Score=41.97  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=36.1

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEe
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIST   49 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~   49 (118)
                      .|-..|..|+++|. .+.|+-|+..|.|.|||..+.+.+..+.
T Consensus       287 gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         287 AHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             SBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccCceeeeccCCC-CCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            46678999999996 8999999999999999999988776554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.03  E-value=0.03  Score=38.33  Aligned_cols=41  Identities=7%  Similarity=0.029  Sum_probs=35.2

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN   51 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~   51 (118)
                      ..+..|++.|. .++|++|+..|.|.+||..+.+.+..+.+.
T Consensus       292 ~~~~~va~s~D-G~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         292 HTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SCCCEEEECSS-SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCEEEEEEcCC-CCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            46788999996 999999999999999999999988655543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.053  Score=38.35  Aligned_cols=70  Identities=11%  Similarity=0.063  Sum_probs=47.3

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec--cccccccccccCC-cccccccCCCCC
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN--IVSDRDSFVWKGH-ARLSVKHTGDSK   76 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~--l~~~~es~~W~~~-~~~~~~~~~d~~   76 (118)
                      .|..+|..++++|.+...++.++..|.|.+||..+.+....+...  ....+.++.|+.. +.+..+...|++
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc
Confidence            466789999999986666777889999999998776665433322  0122456677753 566666665653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.49  E-value=0.037  Score=37.65  Aligned_cols=55  Identities=18%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeE-EeeccccccccccccCCc
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQI-STMNIVSDRDSFVWKGHA   65 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~-~~v~l~~~~es~~W~~~~   65 (118)
                      -++|..|+++|. ...|++|+..|.|.+||..+.+.... +... ...+.++.|+..+
T Consensus       162 ~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~p~~  217 (287)
T d1pgua2         162 RAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAE  217 (287)
T ss_dssp             SSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC
T ss_pred             CCceeEEEeccC-ccccccccccccccceeeccccccccccccc-ccccceeeecccc
Confidence            457999999997 88899999999999999988766421 1110 1334566676444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.068  Score=35.96  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=43.6

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccc----cccccccccCCcccccccCCCC
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIV----SDRDSFVWKGHARLSVKHTGDS   75 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~----~~~es~~W~~~~~~~~~~~~d~   75 (118)
                      ..+..++.+   .+.|+.|+..|.|.+||..+.+.++.+.....    ..+.++.|...+.+..+...||
T Consensus       261 ~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         261 SAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             SCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             eceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            344445444   56899999999999999999888765542211    2355677888887777766665

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.28  E-value=0.036  Score=37.65  Aligned_cols=67  Identities=12%  Similarity=0.057  Sum_probs=43.9

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccccccCCCCC
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSVKHTGDSK   76 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d~~   76 (118)
                      +.|-.+|.. .+.+. .+.|+.|+..|.|.|||..+.+.+..+... ...+.++.|...+ ...+.+.|+.
T Consensus         9 ~GH~~~vit-c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~l~~s~~~-~l~s~s~D~~   75 (355)
T d1nexb2           9 RGHMTSVIT-CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG-ILVSGSTDRT   75 (355)
T ss_dssp             ECCSSSCEE-EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEEETTT-EEEEEETTCC
T ss_pred             CCcCCCcEE-EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECC-CCCEEEEEEcCCC-EEEEEecccc
Confidence            446667632 23454 678888999999999999998887665532 1446677786544 4455555543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.037  Score=37.64  Aligned_cols=69  Identities=12%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             CCCCcccchhhhhCCC---------CCCeEEEEeecceEEEEeCCC-CceeeEEeeccccccccccccCCcccccccCCC
Q psy8836           5 YKLNPGAVEAIAEQPG---------SPNHIIVGYSKGLVVLWDRTT-NTANQISTMNIVSDRDSFVWKGHARLSVKHTGD   74 (118)
Q Consensus         5 y~~~p~aV~~I~~cP~---------ds~~LlIgg~~G~VVl~d~~~-~~~~~~~~v~l~~~~es~~W~~~~~~~~~~~~d   74 (118)
                      |..|-..|..|+++|.         |...|+.|+..|.|.+||..+ .+.+..+... ...+.++.|+..+.+ ++.+.|
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~~l-~s~g~D  278 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPSTL-VSSGAD  278 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTEE-EEEETT
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCCEE-EEEECC
Confidence            3345667889999874         355677788889999999765 3333322211 145667788876654 455545


Q ss_pred             C
Q psy8836          75 S   75 (118)
Q Consensus        75 ~   75 (118)
                      +
T Consensus       279 ~  279 (287)
T d1pgua2         279 A  279 (287)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=0.011  Score=40.35  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=17.4

Q ss_pred             cchhhhhCCCCCCeEEEEeecceEEEEeCCCCcee
Q psy8836          11 AVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTAN   45 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~   45 (118)
                      .+..+...+. .++++++|..|.|.|||..+.+.+
T Consensus       283 ~~~~~~~~~~-~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         283 NLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             TCCCCCEEEE-CSSEEEEEETTEEEEEETTTCCBC
T ss_pred             CceEEEEEcC-CCCEEEEEeCCEEEEEECCCCCEE
Confidence            3344444443 345555555666666665555443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.51  E-value=0.081  Score=35.89  Aligned_cols=41  Identities=12%  Similarity=0.162  Sum_probs=34.5

Q ss_pred             cccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEee
Q psy8836           9 PGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTM   50 (118)
Q Consensus         9 p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v   50 (118)
                      ++.+..|++.|. -++|.+|+..|.|.+||..+.+.+..+.+
T Consensus       279 ~~~~~~~~~s~d-G~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SSCCCEEEECTT-SCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            457788999996 88999999999999999999888765443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=91.99  E-value=0.13  Score=34.37  Aligned_cols=55  Identities=13%  Similarity=0.078  Sum_probs=40.6

Q ss_pred             cchhhhhCCCCCCeEEEEe-ecceEEEEeCCCCceeeEEeeccccccccccccCCcccc
Q psy8836          11 AVEAIAEQPGSPNHIIVGY-SKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg-~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~   68 (118)
                      .+..|++.|. -++|.|++ ..|.|.+||..+.+.+..+...  ....++.|..++...
T Consensus        33 ~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--~~~~~~~~~~~~~~~   88 (301)
T d1l0qa2          33 NPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVAVSPDGKQV   88 (301)
T ss_dssp             SEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEE
T ss_pred             CceEEEEeCC-CCEEEEEECCCCEEEEEECCCCceeeeeecc--ccccccccccccccc
Confidence            3456889996 77887765 5689999999999988766655  555666776666544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.59  E-value=0.19  Score=34.41  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             CCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCccccc
Q psy8836           7 LNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLSV   69 (118)
Q Consensus         7 ~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~~   69 (118)
                      .+.+.|..+++.|. .++|+.++..+.+.+|+..+.+....+... .....++.|..+++...
T Consensus        83 ~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          83 ENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIA  143 (360)
T ss_dssp             CCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEE
T ss_pred             CCCceEEeeeeccc-ccccceeccccccccccccccceeeeeecc-cccccchhhccceeeee
Confidence            46788999999996 999999999999999999888776544332 13345677887777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.70  E-value=0.36  Score=32.53  Aligned_cols=56  Identities=16%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             hhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeeccccccccccccCCcccc-cccC
Q psy8836          16 AEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMNIVSDRDSFVWKGHARLS-VKHT   72 (118)
Q Consensus        16 ~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~l~~~~es~~W~~~~~~~-~~~~   72 (118)
                      +..+. ...|+++...+.|.+||..+.+++..+.+.--....++.|..+++.. ++..
T Consensus         3 a~~~~-~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~   59 (346)
T d1jmxb_           3 ALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN   59 (346)
T ss_dssp             CCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred             cCCCC-CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence            34454 67788888899999999999999877665411234577888887754 4433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=88.56  E-value=0.25  Score=32.89  Aligned_cols=39  Identities=23%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             cchhhhhCCCCCCeEEEEe-ecceEEEEeCCCCceeeEEee
Q psy8836          11 AVEAIAEQPGSPNHIIVGY-SKGLVVLWDRTTNTANQISTM   50 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg-~~G~VVl~d~~~~~~~~~~~v   50 (118)
                      .+..|++.|. .++|+|++ .+|.|.+||.++.+.+..+.+
T Consensus       245 ~~~~va~spd-g~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         245 DPAGIAVTPD-GKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             SEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEeCC-CCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            4567899996 77887776 479999999999988866554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=0.11  Score=34.86  Aligned_cols=41  Identities=20%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEE
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQIS   48 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~   48 (118)
                      +.|.++|.. ...+. .++|+.|+..|.|.|||..+.+.+..+
T Consensus        13 ~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~   53 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTL   53 (342)
T ss_dssp             ECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             CCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            447777754 23443 567888889999999999888876544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=0.52  Score=31.79  Aligned_cols=60  Identities=12%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             CcccchhhhhCCCCCCeEEEEee-cceEEEEeCCCCcee--eEEeeccccccccccccCCcccc
Q psy8836           8 NPGAVEAIAEQPGSPNHIIVGYS-KGLVVLWDRTTNTAN--QISTMNIVSDRDSFVWKGHARLS   68 (118)
Q Consensus         8 ~p~aV~~I~~cP~ds~~LlIgg~-~G~VVl~d~~~~~~~--~~~~v~l~~~~es~~W~~~~~~~   68 (118)
                      +++.|+.|+++|. -++|.+++. .|.|.+|+.....-.  ............++.|..+++.-
T Consensus        35 ~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l   97 (333)
T d1ri6a_          35 VPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFV   97 (333)
T ss_dssp             CSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEE
T ss_pred             CCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEE
Confidence            6789999999996 888878776 689999976544221  11122222445566777777643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.61  E-value=0.44  Score=30.87  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=30.0

Q ss_pred             CCCcccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceee
Q psy8836           6 KLNPGAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQ   46 (118)
Q Consensus         6 ~~~p~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~   46 (118)
                      +.|-++|..|+++   .+.|+.|+..|.|.+|+..+.....
T Consensus        52 ~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          52 TGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             CCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             ecCCCCEeeeecc---cceeecccccccccccccccccccc
Confidence            4467788888764   5689999999999999887776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.04  E-value=0.55  Score=34.11  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=32.9

Q ss_pred             ccchhhhhCCCCCCeEEEEeecceEEEEeCCCCceeeEEeec
Q psy8836          10 GAVEAIAEQPGSPNHIIVGYSKGLVVLWDRTTNTANQISTMN   51 (118)
Q Consensus        10 ~aV~~I~~cP~ds~~LlIgg~~G~VVl~d~~~~~~~~~~~v~   51 (118)
                      .++..|+..|. -++|.+++..|.|.+||..+.+......++
T Consensus        62 ~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          62 YAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             SSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             CCeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            47888999995 899999999999999999888754444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=81.45  E-value=1.1  Score=29.73  Aligned_cols=39  Identities=13%  Similarity=-0.017  Sum_probs=30.3

Q ss_pred             cchhhhhCCCCCCeEEEEe-ecceEEEEeCCCCceeeEEee
Q psy8836          11 AVEAIAEQPGSPNHIIVGY-SKGLVVLWDRTTNTANQISTM   50 (118)
Q Consensus        11 aV~~I~~cP~ds~~LlIgg-~~G~VVl~d~~~~~~~~~~~v   50 (118)
                      .+..|+..|. -+.|+|++ ..|.|.+||..+.+.+..+..
T Consensus        35 ~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_          35 TPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             CCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             CccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            4667889985 77777765 579999999999988765544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=3.7  Score=27.23  Aligned_cols=49  Identities=12%  Similarity=0.222  Sum_probs=32.2

Q ss_pred             eEEEEe-ecceEEEEeCCCCce---eeEEeeccccccccccccCCcccc-cccCCC
Q psy8836          24 HIIVGY-SKGLVVLWDRTTNTA---NQISTMNIVSDRDSFVWKGHARLS-VKHTGD   74 (118)
Q Consensus        24 ~LlIgg-~~G~VVl~d~~~~~~---~~~~~v~l~~~~es~~W~~~~~~~-~~~~~d   74 (118)
                      .+.|++ .++.|.+||+.+...   ++.+...  ....++.|..+++.. +....|
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d   58 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPE   58 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETTT
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCC
Confidence            355666 778999998765533   3444444  667788899998844 555434