Psyllid ID: psy8846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHccccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccEEEccccEEEEEEccccccHHHHHHHHcccEEEcccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHcccccHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcHHHcccccccccccccHHHHHHHHHHHHcHHHHHHHcccccccccEEEEc
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEEEEEcccccccEEEcEEEccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHccHHHHHHHHHHHHHHHHHccccEcccEEEEcEccEccEEEEEEEcccccccccccHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHcccccccccEEEcHHHHHHccccEEEEccccccccHHHHccccccEEEcccccHHHHHHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccEEEEE
MKNIALFYTCITQNAAMLKLRVLCQglgtklcpisaTAVQSQQRNLhdipeklkdiptaenpkffDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILlgmqpcdhiieisfpvrrdsgdyeiitgyraqhsthrtpckgatavQSQQRNlhdipeklkdiptaenpkffDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILlgmqpcdhiieisfpvrrdsgdyeiitgyraqhsthrtpckggirfsddVSRDEVKALSALMTFKcacvdvpfggakagikinpknysenELEKITRRFTLELAKKGfigefkavpgararegnvTFNLLFHYkfssgpvsmylpqiwvqekgkcpglpthtrkplaleeykldngtivgfpgavpyegenlmyepcdifVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRfgnvggripvtpsesfqkrisgasekdivhsglDYTMERSARAIMKTAMKYNlghldinahacvtgkpinqggihgrisatgrgvfhGLENFIMEANYmsmvgttpgwggktfivq
MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKlvedikgrmtiedkkkkvRGILLGMQPCDHIIEISfpvrrdsgDYEIITGYraqhsthrtpCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKlvedikgrmtiedkkkkvRGILLGMQPCDHIIEISFPVRRDSGDYEIITgyraqhsthrtpckggirfsddvSRDEVKALSALMTFKCACVDVPFggakagikinpknysenelEKITRRFTLELAKKGfigefkavpgaraREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERrfgnvggripvtpsesfqkrisgasekdivhsgLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVgttpgwggktfivq
MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
***IALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQ************LKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQH*********************************ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEA***************************************IVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFI**
****ALFYTCITQNAAMLKLRVL*************************************NPKFFDMVEFFFHRACQIAEDKLVED***********KKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGAT**QSQQRNLHD*********TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMT**D*KKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQ******************RNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKNIALFYTCITQNAAMLKLRVLCQGLGTKLCPISATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGATAVQSQQRNLHDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREGNVTFNLLFHYKFSSGPVSMYLPQIWVQEKGKCPGLPTHTRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIMEANYMSMVGTTPGWGGKTFIVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
P54385 562 Glutamate dehydrogenase, yes N/A 0.323 0.327 0.754 3e-81
P26443558 Glutamate dehydrogenase 1 yes N/A 0.281 0.286 0.689 3e-63
P00367558 Glutamate dehydrogenase 1 yes N/A 0.281 0.286 0.683 4e-63
P00366558 Glutamate dehydrogenase 1 yes N/A 0.281 0.286 0.689 4e-63
P10860558 Glutamate dehydrogenase 1 yes N/A 0.281 0.286 0.689 4e-63
Q64HZ9555 Glutamate dehydrogenase 2 N/A N/A 0.294 0.300 0.660 9e-63
Q64HZ8558 Glutamate dehydrogenase 2 yes N/A 0.281 0.286 0.677 1e-62
P49448558 Glutamate dehydrogenase 2 yes N/A 0.281 0.286 0.677 1e-62
Q64I00558 Glutamate dehydrogenase 2 N/A N/A 0.281 0.286 0.677 2e-62
Q64I01558 Glutamate dehydrogenase 2 N/A N/A 0.281 0.286 0.670 8e-62
>sp|P54385|DHE3_DROME Glutamate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Gdh PE=1 SV=2 Back     alignment and function desciption
 Score =  303 bits (775), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 166/187 (88%), Gaps = 3/187 (1%)

Query: 148 TAVQSQQRNL---HDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTI 204
           TAV    R     H IP++LKD+PTA++P+FFDMVE+FFHR CQIAE+ LV+D+KG++T 
Sbjct: 27  TAVMQSSRGYATEHQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTR 86

Query: 205 EDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDD 264
           ++KK+KV+GIL+ MQPCDHIIEI+FP+RRD+G+YE+ITGYRAQHSTH+TP KGGIRFS D
Sbjct: 87  DEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLD 146

Query: 265 VSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFI 324
           VSRDEVKALSALMTFKCACVDVPFGGAKAG+KINPK YSE+ELEKITRRFTLELAKKGFI
Sbjct: 147 VSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFI 206

Query: 325 GEFKAVP 331
           G    VP
Sbjct: 207 GPGVDVP 213

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 3
>sp|P26443|DHE3_MOUSE Glutamate dehydrogenase 1, mitochondrial OS=Mus musculus GN=Glud1 PE=1 SV=1 Back     alignment and function description
>sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens GN=GLUD1 PE=1 SV=2 Back     alignment and function description
>sp|P00366|DHE3_BOVIN Glutamate dehydrogenase 1, mitochondrial OS=Bos taurus GN=GLUD1 PE=1 SV=2 Back     alignment and function description
>sp|P10860|DHE3_RAT Glutamate dehydrogenase 1, mitochondrial OS=Rattus norvegicus GN=Glud1 PE=1 SV=2 Back     alignment and function description
>sp|Q64HZ9|DHE4_HYLLA Glutamate dehydrogenase 2, mitochondrial OS=Hylobates lar GN=GLUD2 PE=3 SV=1 Back     alignment and function description
>sp|Q64HZ8|DHE4_PANTR Glutamate dehydrogenase 2, mitochondrial OS=Pan troglodytes GN=GLUD2 PE=3 SV=1 Back     alignment and function description
>sp|P49448|DHE4_HUMAN Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2 Back     alignment and function description
>sp|Q64I00|DHE4_PONPY Glutamate dehydrogenase 2, mitochondrial OS=Pongo pygmaeus GN=GLUD2 PE=3 SV=1 Back     alignment and function description
>sp|Q64I01|DHE4_GORGO Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla GN=GLUD2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
426365429489 PREDICTED: glutamate dehydrogenase 1, mi 0.621 0.721 0.464 2e-90
193582510537 PREDICTED: glutamate dehydrogenase, mito 0.214 0.227 0.831 5e-88
301625215494 PREDICTED: glutamate dehydrogenase 1, mi 0.623 0.716 0.44 4e-86
307195623556 Glutamate dehydrogenase, mitochondrial [ 0.323 0.330 0.776 5e-82
156548992548 PREDICTED: glutamate dehydrogenase, mito 0.325 0.337 0.783 2e-81
383854474553 PREDICTED: glutamate dehydrogenase, mito 0.339 0.349 0.764 6e-81
350420679553 PREDICTED: glutamate dehydrogenase, mito 0.339 0.349 0.758 2e-80
66523390553 PREDICTED: glutamate dehydrogenase, mito 0.338 0.347 0.768 2e-80
340724046553 PREDICTED: glutamate dehydrogenase, mito 0.338 0.347 0.762 2e-80
380022072553 PREDICTED: glutamate dehydrogenase, mito 0.338 0.347 0.762 5e-80
>gi|426365429|ref|XP_004049776.1| PREDICTED: glutamate dehydrogenase 1, mitochondrial [Gorilla gorilla gorilla] Back     alignment and taxonomy information
 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/428 (46%), Positives = 257/428 (60%), Gaps = 75/428 (17%)

Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
           ++P FF MVE FF R   I EDKLVED++ R + E K+ +VRGIL  ++PC+H++ + FP
Sbjct: 62  DDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLCFP 121

Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
           +RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 181

Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPGARAREG--------NVTF 342
           AKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG    VP      G        +   
Sbjct: 182 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 241

Query: 343 NLLFHYKFS-----------SGPVSMYLPQIWVQEKGKCPGLPTHTRK--------PLAL 383
           + + HY F+            G V ++  +   +   KC  +              P  L
Sbjct: 242 STIGHYDFNFCIMGNCSSQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKEL 301

Query: 384 EEYKLDNGTIVGFPGAVPYEGENLMYEPCDIFVPAAVEKVITKNNAHKIQAKIIAEAAN- 442
           E++KL +G+I+GFP A PYEG +++   CDI +PAA EK +TK+NA +++AKIIAE AN 
Sbjct: 302 EDFKLQHGSILGFPKAKPYEG-SILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANG 360

Query: 443 ----ESVQESLERR-------FGNVGGRIPVTPSESFQK--------------------- 470
               E+ +  LER        + N GG + V+  E  +                      
Sbjct: 361 PTTPEADKIFLERNIMVIPDLYLNAGG-VTVSYFEWLKNLNHVSYGRLTFKYERDSNYHL 419

Query: 471 -------RISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGHLDINAHACVTG----- 518
                  R+ GASEKDIVHSGL YTMERSAR IM+TAMKYNLG LD+   A V       
Sbjct: 420 LTLYVTLRVVGASEKDIVHSGLAYTMERSARQIMRTAMKYNLG-LDLRTAAYVNAIEKVF 478

Query: 519 KPINQGGI 526
           K  N+ G+
Sbjct: 479 KVYNEAGV 486

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|193582510|ref|XP_001951708.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|301625215|ref|XP_002941808.1| PREDICTED: glutamate dehydrogenase 1, mitochondrial-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|307195623|gb|EFN77465.1| Glutamate dehydrogenase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156548992|ref|XP_001607265.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383854474|ref|XP_003702746.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350420679|ref|XP_003492588.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|66523390|ref|XP_392776.2| PREDICTED: glutamate dehydrogenase, mitochondrial isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|340724046|ref|XP_003400396.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380022072|ref|XP_003694879.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
FB|FBgn0001098 562 Gdh "Glutamate dehydrogenase" 0.323 0.327 0.754 9.1e-109
ZFIN|ZDB-GENE-030828-1542 glud1b "glutamate dehydrogenas 0.283 0.297 0.683 3.1e-102
ZFIN|ZDB-GENE-030114-2544 glud1a "glutamate dehydrogenas 0.283 0.295 0.677 8e-102
UNIPROTKB|P00367558 GLUD1 "Glutamate dehydrogenase 0.283 0.288 0.683 1.3e-101
UNIPROTKB|F1SEN2558 LOC100736902 "Uncharacterized 0.283 0.288 0.689 2.7e-101
MGI|MGI:95753558 Glud1 "glutamate dehydrogenase 0.283 0.288 0.689 4.4e-101
RGD|2708558 Glud1 "glutamate dehydrogenase 0.283 0.288 0.689 5.6e-101
UNIPROTKB|P00366558 GLUD1 "Glutamate dehydrogenase 0.283 0.288 0.689 7.1e-101
UNIPROTKB|P49448558 GLUD2 "Glutamate dehydrogenase 0.295 0.301 0.654 1.3e-99
UNIPROTKB|F1Q2N5487 GLUD1 "Glutamate dehydrogenase 0.264 0.308 0.686 4.9e-98
FB|FBgn0001098 Gdh "Glutamate dehydrogenase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 755 (270.8 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 141/187 (75%), Positives = 166/187 (88%)

Query:   148 TAVQSQQRNL---HDIPEKLKDIPTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTI 204
             TAV    R     H IP++LKD+PTA++P+FFDMVE+FFHR CQIAE+ LV+D+KG++T 
Sbjct:    27 TAVMQSSRGYATEHQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTR 86

Query:   205 EDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDD 264
             ++KK+KV+GIL+ MQPCDHIIEI+FP+RRD+G+YE+ITGYRAQHSTH+TP KGGIRFS D
Sbjct:    87 DEKKQKVKGILMLMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLD 146

Query:   265 VSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFI 324
             VSRDEVKALSALMTFKCACVDVPFGGAKAG+KINPK YSE+ELEKITRRFTLELAKKGFI
Sbjct:   147 VSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFI 206

Query:   325 GEFKAVP 331
             G    VP
Sbjct:   207 GPGVDVP 213
GO:0006536 "glutamate metabolic process" evidence=IDA
GO:0004353 "glutamate dehydrogenase [NAD(P)+
GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0006116 "NADH oxidation" evidence=IDA
GO:0042802 "identical protein binding" evidence=IDA
GO:0009060 "aerobic respiration" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=ISS;IDA
GO:0046693 "sperm storage" evidence=TAS
GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=ISS
GO:0000166 "nucleotide binding" evidence=IEA
ZFIN|ZDB-GENE-030828-1 glud1b "glutamate dehydrogenase 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030114-2 glud1a "glutamate dehydrogenase 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P00367 GLUD1 "Glutamate dehydrogenase 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEN2 LOC100736902 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:95753 Glud1 "glutamate dehydrogenase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2708 Glud1 "glutamate dehydrogenase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P00366 GLUD1 "Glutamate dehydrogenase 1, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P49448 GLUD2 "Glutamate dehydrogenase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2N5 GLUD1 "Glutamate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.4.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
pfam02812131 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydr 3e-47
COG0334411 COG0334, GdhA, Glutamate dehydrogenase/leucine deh 5e-34
cd01076227 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain 5e-31
PLN02477410 PLN02477, PLN02477, glutamate dehydrogenase 4e-24
COG0334411 COG0334, GdhA, Glutamate dehydrogenase/leucine deh 9e-15
PLN02477410 PLN02477, PLN02477, glutamate dehydrogenase 2e-12
smart00839102 smart00839, ELFV_dehydrog, Glutamate/Leucine/Pheny 2e-12
pfam00208237 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl 2e-12
PRK14030445 PRK14030, PRK14030, glutamate dehydrogenase; Provi 1e-11
PRK14031444 PRK14031, PRK14031, glutamate dehydrogenase; Provi 3e-10
pfam02812131 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydr 3e-09
PTZ00079454 PTZ00079, PTZ00079, NADP-specific glutamate dehydr 2e-08
PRK09414445 PRK09414, PRK09414, glutamate dehydrogenase; Provi 5e-08
cd05211217 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding 4e-07
cd01076 227 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain 7e-07
COG0334 411 COG0334, GdhA, Glutamate dehydrogenase/leucine deh 5e-06
PLN02477 410 PLN02477, PLN02477, glutamate dehydrogenase 2e-04
COG0334411 COG0334, GdhA, Glutamate dehydrogenase/leucine deh 0.001
cd01075200 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d 0.003
>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Back     alignment and domain information 
 Score =  161 bits (409), Expect = 3e-47
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 221 CDHIIEISFPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFK 280
            + +I++  PVR D G+ E + GYR QH+T   P KGGIRF   V+ +EVK L+  MT+K
Sbjct: 1   PERVIQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKGGIRFHPYVTLEEVKRLAFGMTYK 60

Query: 281 CACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
            A   +PFGG K GI  +PK  S+ ELE++TR F  EL     IG  + +P 
Sbjct: 61  NALAGLPFGGGKGGIIGDPKGLSDAELERLTRAFGRELES--IIGPGRDIPA 110

Length = 131
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase Back     alignment and domain information
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase Back     alignment and domain information
>gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Back     alignment and domain information
>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Back     alignment and domain information
>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Back     alignment and domain information
>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase Back     alignment and domain information
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
PRK14030445 glutamate dehydrogenase; Provisional 100.0
COG0334411 GdhA Glutamate dehydrogenase/leucine dehydrogenase 100.0
PLN02477410 glutamate dehydrogenase 100.0
PRK09414445 glutamate dehydrogenase; Provisional 100.0
PTZ00079454 NADP-specific glutamate dehydrogenase; Provisional 100.0
PRK14031444 glutamate dehydrogenase; Provisional 100.0
KOG2250|consensus514 100.0
PTZ003241002 glutamate dehydrogenase 2; Provisional 100.0
PF02812131 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, di 100.0
cd05313254 NAD_bind_2_Glu_DH NAD(P) binding domain of glutama 100.0
KOG2250|consensus514 100.0
PF00208244 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val 100.0
cd05211217 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of 100.0
cd01076227 NAD_bind_1_Glu_DH NAD(P) binding domain of glutama 100.0
PRK14030445 glutamate dehydrogenase; Provisional 99.97
PRK09414445 glutamate dehydrogenase; Provisional 99.96
PLN02477410 glutamate dehydrogenase 99.96
PRK14031444 glutamate dehydrogenase; Provisional 99.95
PTZ00079454 NADP-specific glutamate dehydrogenase; Provisional 99.94
COG0334411 GdhA Glutamate dehydrogenase/leucine dehydrogenase 99.94
cd01075200 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l 99.89
PF02812131 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, di 99.87
smart00839102 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali 99.74
PTZ003241002 glutamate dehydrogenase 2; Provisional 99.32
PF05088 1528 Bac_GDH: Bacterial NAD-glutamate dehydrogenase 98.27
COG2902 1592 NAD-specific glutamate dehydrogenase [Amino acid t 97.82
PRK08374336 homoserine dehydrogenase; Provisional 97.76
PRK06392326 homoserine dehydrogenase; Provisional 96.86
cd0519186 NAD_bind_amino_acid_DH NAD(P) binding domain of am 93.37
PRK06270341 homoserine dehydrogenase; Provisional 92.64
COG1023300 Gnd Predicted 6-phosphogluconate dehydrogenase [Ca 89.27
PF03446163 NAD_binding_2: NAD binding domain of 6-phosphogluc 88.9
PF0380796 F420_oxidored: NADP oxidoreductase coenzyme F420-d 86.01
PRK09599301 6-phosphogluconate dehydrogenase-like protein; Rev 85.79
COG0460333 ThrA Homoserine dehydrogenase [Amino acid transpor 85.1
PF00670162 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase 84.54
PF10727127 Rossmann-like: Rossmann-like domain; InterPro: IPR 82.25
COG0373414 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] 81.55
PF02826178 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy 80.66
>PRK14030 glutamate dehydrogenase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-86  Score=707.66  Aligned_cols=342  Identities=22%  Similarity=0.284  Sum_probs=315.0

Q ss_pred             CCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEecC
Q psy8846         171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQHST  250 (568)
Q Consensus       171 ~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h~~  250 (568)
                      .+++||+++..++++++.+++..          ++   ....++++.|+.|+|+++|++||.||+|++++|+|||||||+
T Consensus        16 ~e~eF~~~~~~~~~~~~~~l~~~----------~~---y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~   82 (445)
T PRK14030         16 GESEYLQAVKEVLLSVEDVYNQH----------PE---FEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN   82 (445)
T ss_pred             CChHHHHHHHHHHHHHHHHHccC----------hh---hhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence            68999999999999999999942          00   112349999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccccCC
Q psy8846         251 HRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAV  330 (568)
Q Consensus       251 ~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di  330 (568)
                      ++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+.+|+.||||+||+|+++|.+  +|||+.||
T Consensus        83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~--~iGp~~DI  160 (445)
T PRK14030         83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPDTDV  160 (445)
T ss_pred             cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997  89999999


Q ss_pred             CCCc----ccccch---hhhcccCc-----------------e----------------------------eec--cCHH
Q psy8846         331 PGAR----AREGNV---TFNLLFHY-----------------K----------------------------FSS--GPVS  356 (568)
Q Consensus       331 papD----~~~maw---~y~~~~G~-----------------R----------------------------~~~--GnVG  356 (568)
                      |+||    +++|+|   +|+++.|+                 |                            .+|  ||||
T Consensus       161 pApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG  240 (445)
T PRK14030        161 PAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVA  240 (445)
T ss_pred             cccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHH
Confidence            9999    999999   89875432                 1                            122  9999


Q ss_pred             HHHHHHHHHCCCeEeEeCCC--------CCCHHH---HHHHHHhcCCcc-----cCCCCeecCCCCcccccceEEeeccc
Q psy8846         357 MYLPQIWVQEKGKCPGLPTH--------TRKPLA---LEEYKLDNGTIV-----GFPGAVPYEGENLMYEPCDIFVPAAV  420 (568)
Q Consensus       357 ~~~A~~L~~~GakvvaVsD~--------GiD~~~---L~~~~~~~g~v~-----~~~ga~~i~~~~ll~~~cDIliPaAl  420 (568)
                      +++|++|++.|||||+|||+        |||+++   |.++++++|++.     +||+++.++++++|+++||||+|||+
T Consensus       241 ~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl  320 (445)
T PRK14030        241 WGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCAT  320 (445)
T ss_pred             HHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccc
Confidence            99999999999999999999        899988   889999999886     88999999999999999999999999


Q ss_pred             cCCCChhhHhcc---cceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccCCCcHHHHHHH
Q psy8846         421 EKVITKNNAHKI---QAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISGASEKDIVHSG  484 (568)
Q Consensus       421 ~~~It~~na~~i---~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~~we~e~V~~~  484 (568)
                      +|+||++||++|   +||+|+||||+|+++...+.|.++  ||+|+||             ||.||.++.+|++|+|+++
T Consensus       321 ~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~r--GI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~  398 (445)
T PRK14030        321 QNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAA--KQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEK  398 (445)
T ss_pred             cccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHC--CCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHH
Confidence            999999999999   999999999999877777777666  5888888             9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCChhhhhhhheee-c-ccCccccee
Q psy8846         485 LDYTMERSARAIMKTAMKYNLGHLDINAHACVTGKP-I-NQGGIHGRI  530 (568)
Q Consensus       485 L~~~M~~a~~~V~~~a~~~~~~~~dlR~AAyi~Ai~-i-~a~~~~G~~  530 (568)
                      |+++|.++|+.|++.+++++.. +|||+|||++|+. | +||..+||+
T Consensus       399 L~~~m~~~~~~v~~~~~~~~~~-~~lr~aA~~~a~~rva~a~~~rG~~  445 (445)
T PRK14030        399 LHQIMSGIHEQCVKYGKEGDGY-INYVKGANIAGFMKVAKAMLAQGVV  445 (445)
T ss_pred             HHHHHHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999998732 6899999999999 7 999999984

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02477 glutamate dehydrogenase Back     alignment and domain information
>PRK09414 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK14031 glutamate dehydrogenase; Provisional Back     alignment and domain information
>KOG2250|consensus Back     alignment and domain information
>PTZ00324 glutamate dehydrogenase 2; Provisional Back     alignment and domain information
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related Back     alignment and domain information
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 Back     alignment and domain information
>KOG2250|consensus Back     alignment and domain information
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related Back     alignment and domain information
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>PRK14030 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PRK09414 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PLN02477 glutamate dehydrogenase Back     alignment and domain information
>PRK14031 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related Back     alignment and domain information
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Back     alignment and domain information
>PTZ00324 glutamate dehydrogenase 2; Provisional Back     alignment and domain information
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase Back     alignment and domain information
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06392 homoserine dehydrogenase; Provisional Back     alignment and domain information
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information
>PRK06270 homoserine dehydrogenase; Provisional Back     alignment and domain information
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 Back     alignment and domain information
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain Back     alignment and domain information
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 Back     alignment and domain information
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins Back     alignment and domain information
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Back     alignment and domain information
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3etd_A501 Structure Of Glutamate Dehydrogenase Complexed With 1e-64
3etd_A 501 Structure Of Glutamate Dehydrogenase Complexed With 2e-26
1l1f_A505 Structure Of Human Glutamate Dehydrogenase-Apo Form 5e-64
1l1f_A 505 Structure Of Human Glutamate Dehydrogenase-Apo Form 5e-27
3mw9_A501 Bovine Glutamate Dehydrogenase Complexed With Nadh, 5e-64
3mw9_A 501 Bovine Glutamate Dehydrogenase Complexed With Nadh, 5e-27
1nr1_A496 Crystal Structure Of The R463a Mutant Of Human Glut 8e-64
1nr1_A 496 Crystal Structure Of The R463a Mutant Of Human Glut 6e-27
1hwy_A501 Bovine Glutamate Dehydrogenase Complexed With Nad A 5e-63
1hwy_A 501 Bovine Glutamate Dehydrogenase Complexed With Nad A 7e-26
1nqt_A496 Crystal Structure Of Bovine Glutamate Dehydrogenase 8e-63
1nqt_A 496 Crystal Structure Of Bovine Glutamate Dehydrogenase 6e-27
1b3b_A415 Thermotoga Maritima Glutamate Dehydrogenase Mutant 4e-27
1b3b_A415 Thermotoga Maritima Glutamate Dehydrogenase Mutant 3e-09
1b26_A416 Glutamate Dehydrogenase Length = 416 1e-26
1b26_A416 Glutamate Dehydrogenase Length = 416 1e-08
1bvu_A418 Glutamate Dehydrogenase From Thermococcus Litoralis 7e-25
3aoe_E419 Crystal Structure Of Hetero-Hexameric Glutamate Deh 2e-20
2tmg_A415 Thermotoga Maritima Glutamate Dehydrogenase Mutant 2e-20
2tmg_A415 Thermotoga Maritima Glutamate Dehydrogenase Mutant 1e-08
1euz_A419 Glutamate Dehydrogenase From Thermococcus Profundus 2e-20
1euz_A419 Glutamate Dehydrogenase From Thermococcus Profundus 3e-08
3k92_A424 Crystal Structure Of A E93k Mutant Of The Majour Ba 1e-19
3k92_A424 Crystal Structure Of A E93k Mutant Of The Majour Ba 3e-05
1gtm_A419 Structure Of Glutamate Dehydrogenase Length = 419 1e-19
1gtm_A419 Structure Of Glutamate Dehydrogenase Length = 419 2e-08
3k8z_A423 Crystal Structure Of Gudb1 A Decryptified Secondary 1e-19
3k8z_A423 Crystal Structure Of Gudb1 A Decryptified Secondary 5e-06
2yfq_A421 Crystal Structure Of Glutamate Dehydrogenase From P 6e-18
2yfq_A421 Crystal Structure Of Glutamate Dehydrogenase From P 3e-07
1v9l_A421 L-Glutamate Dehydrogenase From Pyrobaculum Islandic 9e-18
3aoe_A424 Crystal Structure Of Hetero-Hexameric Glutamate Deh 2e-17
3aoe_A424 Crystal Structure Of Hetero-Hexameric Glutamate Deh 3e-06
3aog_A440 Crystal Structure Of Glutamate Dehydrogenase (Gdhb) 2e-17
3aog_A440 Crystal Structure Of Glutamate Dehydrogenase (Gdhb) 4e-06
3r3j_A456 Kinetic And Structural Characterization Of Plasmodi 5e-12
1hrd_A449 Glutamate Dehydrogenase Length = 449 2e-10
2yfh_A448 Structure Of A Chimeric Glutamate Dehydrogenase Len 3e-10
1aup_A449 Glutamate Dehydrogenase Length = 449 1e-09
1k89_A449 K89l Mutant Of Glutamate Dehydrogenase Length = 449 1e-09
4fcc_A450 Glutamate Dehydrogenase From E. Coli Length = 450 2e-07
2yfg_E447 Structural Determinants Of Cofactor Specificity And 2e-07
3sbo_A447 Structure Of E.Coli Gdh From Native Source Length = 2e-07
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/161 (69%), Positives = 134/161 (83%)
Query: 171 ENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFP 230
           ++P FF MVE FF R   I EDKLVED+K R T E K+ +VRGIL  ++PC+H++ +SFP
Sbjct: 5   DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSLSFP 64
Query: 231 VRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGG 290
           +RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPFGG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 291 AKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
           AKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG    VP
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVP 165
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501 Back     alignment and structure
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505 Back     alignment and structure
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505 Back     alignment and structure
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501 Back     alignment and structure
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501 Back     alignment and structure
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496 Back     alignment and structure
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496 Back     alignment and structure
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501 Back     alignment and structure
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501 Back     alignment and structure
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496 Back     alignment and structure
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496 Back     alignment and structure
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415 Back     alignment and structure
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415 Back     alignment and structure
>pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416 Back     alignment and structure
>pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416 Back     alignment and structure
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis Length = 418 Back     alignment and structure
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 419 Back     alignment and structure
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415 Back     alignment and structure
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415 Back     alignment and structure
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419 Back     alignment and structure
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419 Back     alignment and structure
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424 Back     alignment and structure
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424 Back     alignment and structure
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419 Back     alignment and structure
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419 Back     alignment and structure
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423 Back     alignment and structure
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423 Back     alignment and structure
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421 Back     alignment and structure
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421 Back     alignment and structure
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Complexed With Nad Length = 421 Back     alignment and structure
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424 Back     alignment and structure
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424 Back     alignment and structure
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440 Back     alignment and structure
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440 Back     alignment and structure
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium Falciparum Glutamate Dehydrogenase 2 Length = 456 Back     alignment and structure
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase Length = 449 Back     alignment and structure
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase Length = 448 Back     alignment and structure
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase Length = 449 Back     alignment and structure
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase Length = 449 Back     alignment and structure
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli Length = 450 Back     alignment and structure
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain Flexibility In Bacterial Glutamate Dehydrogenases Length = 447 Back     alignment and structure
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source Length = 447 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 2e-73
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 3e-29
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 3e-27
3mw9_A 501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 5e-23
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 2e-59
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 6e-28
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 2e-14
2tmg_A 415 Protein (glutamate dehydrogenase); metabolic role, 6e-13
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 3e-59
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 7e-27
1gtm_A 419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 3e-14
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 4e-14
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 4e-58
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 5e-27
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 1e-13
3aog_A 440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 1e-12
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 4e-58
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 1e-19
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 2e-14
1v9l_A 421 Glutamate dehydrogenase; protein-NAD complex, oxid 7e-12
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 1e-57
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 2e-26
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 6e-13
2yfq_A 421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 5e-12
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 8e-57
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 3e-20
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 1e-13
3aoe_E 419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 4e-11
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 1e-56
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 3e-22
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 7e-13
3k92_A 424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 3e-12
1leh_A364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 1e-31
1leh_A364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 1e-15
1leh_A 364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 6e-05
2bma_A470 Glutamate dehydrogenase (NADP+); malaria, drug des 8e-31
2bma_A470 Glutamate dehydrogenase (NADP+); malaria, drug des 4e-07
1bgv_A449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 9e-31
1bgv_A449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 4e-06
3r3j_A456 Glutamate dehydrogenase; rossman fold, oxidoreduct 1e-28
3r3j_A456 Glutamate dehydrogenase; rossman fold, oxidoreduct 1e-06
2yfg_A447 NADP-specific glutamate dehydrogenase; oxidoreduct 3e-28
2yfg_A447 NADP-specific glutamate dehydrogenase; oxidoreduct 1e-04
1c1d_A355 L-phenylalanine dehydrogenase; amino acid dehydrog 2e-26
1c1d_A355 L-phenylalanine dehydrogenase; amino acid dehydrog 1e-13
1c1d_A 355 L-phenylalanine dehydrogenase; amino acid dehydrog 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 Back     alignment and structure
 Score =  241 bits (618), Expect = 2e-73
 Identities = 111/163 (68%), Positives = 133/163 (81%)

Query: 169 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
             ++P FF MVE FF R   I EDKLVED+K R T E K+ +VR IL  ++PC+H++ +S
Sbjct: 3   REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLS 62

Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
           FP+RRD G +E+I GYRAQHS HRTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPF
Sbjct: 63  FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122

Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVP 331
           GGAKAG+KINPKNY++NELEKITRRFT+ELAKKGFIG    VP
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVP 165
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 Back     alignment and structure
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 Back     alignment and structure
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415 Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415 Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415 Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415 Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419 Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419 Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419 Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419 Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470 Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470 Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449 Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449 Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456 Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456 Back     alignment and structure
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447 Back     alignment and structure
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447 Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 100.0
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 100.0
3r3j_A456 Glutamate dehydrogenase; rossman fold, oxidoreduct 100.0
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 100.0
2bma_A470 Glutamate dehydrogenase (NADP+); malaria, drug des 100.0
4fcc_A450 Glutamate dehydrogenase; protein complex, rossmann 100.0
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 100.0
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 100.0
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 100.0
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 100.0
1bgv_A449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 100.0
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 100.0
1c1d_A355 L-phenylalanine dehydrogenase; amino acid dehydrog 100.0
1leh_A364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 100.0
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 100.0
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 99.96
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 99.95
3r3j_A456 Glutamate dehydrogenase; rossman fold, oxidoreduct 99.95
4fcc_A450 Glutamate dehydrogenase; protein complex, rossmann 99.94
2bma_A470 Glutamate dehydrogenase (NADP+); malaria, drug des 99.94
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 99.94
1bgv_A449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 99.93
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 99.93
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 99.93
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 99.92
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 99.92
1c1d_A355 L-phenylalanine dehydrogenase; amino acid dehydrog 99.45
1leh_A364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 99.4
4gbj_A297 6-phosphogluconate dehydrogenase NAD-binding; stru 90.92
3n58_A464 Adenosylhomocysteinase; ssgcid, hydrolase, structu 89.15
3h9u_A436 Adenosylhomocysteinase; NAD CO-factor complex, str 86.61
3gvp_A435 Adenosylhomocysteinase 3; protein CO-factor comple 85.52
3obb_A300 Probable 3-hydroxyisobutyrate dehydrogenase; struc 85.24
3llv_A141 Exopolyphosphatase-related protein; NAD(P)-binding 85.24
2o4c_A380 Erythronate-4-phosphate dehydrogenase; erythronate 83.7
4e5n_A330 Thermostable phosphite dehydrogenase; D-2-hydroxya 83.22
2pi1_A334 D-lactate dehydrogenase; oxidoreductase, D-LDH, NA 82.64
3d64_A494 Adenosylhomocysteinase; structural genomics, ssgci 81.38
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 80.27
2j6i_A364 Formate dehydrogenase; oxidoreductase, D-specific- 80.21
3g0o_A303 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine 80.07
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-89  Score=741.37  Aligned_cols=359  Identities=51%  Similarity=0.786  Sum_probs=330.7

Q ss_pred             CCCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEE
Q psy8846         168 PTAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQ  247 (568)
Q Consensus       168 ~T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~  247 (568)
                      .+..+|+||++|.++|++|+.+++++|+|+|+.++++++|++.++++++.|++|+|+++|++||.||+|++++|+|||||
T Consensus         2 ~~~~~~~f~~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~i~~~vp~~~D~G~~~v~~GyRvq   81 (501)
T 3mw9_A            2 DREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQ   81 (501)
T ss_dssp             CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCTTCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhHHHHHHHhCCCeEEEEEEEEEeCCCCEEEeeeEEEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCccccc
Q psy8846         248 HSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEF  327 (568)
Q Consensus       248 h~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~  327 (568)
                      ||+++||+||||||||++|++|+++||+||||||||+|||||||||||.+||+.+|+.|++|+||+|+++|.++.+|||+
T Consensus        82 hn~a~GP~kGGiR~hp~v~l~ev~~La~~MT~KnAl~~LP~GGgKGgi~~DPk~~s~~El~r~~r~f~~eL~~~~~IGp~  161 (501)
T 3mw9_A           82 HSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPG  161 (501)
T ss_dssp             CCCSSSSEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHTTSCBTT
T ss_pred             ECCCcCCCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCccCCHHHHHHHHHHHHHHHhhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987899999


Q ss_pred             cCCCCCc----ccccch---hhhccc------------Cc---------e------------------------------
Q psy8846         328 KAVPGAR----AREGNV---TFNLLF------------HY---------K------------------------------  349 (568)
Q Consensus       328 ~dipapD----~~~maw---~y~~~~------------G~---------R------------------------------  349 (568)
                      .||||||    +++|+|   +|+++.            |.         |                              
T Consensus       162 ~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV~~~~~~~l~~~~~~~~~G~~~~  241 (501)
T 3mw9_A          162 VDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPG  241 (501)
T ss_dssp             TEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHTCHHHHHHTTCCSS
T ss_pred             eeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHHHHHHHHHHhhhHHHHHcCCCCC
Confidence            9999999    899999   775421            11         1                              


Q ss_pred             ------eec--cCHHHHHHHHHHHCCCeEeEeCCC--------CCCHHHHHHHHHhcCCcccCCCCeecCCCCcccccce
Q psy8846         350 ------FSS--GPVSMYLPQIWVQEKGKCPGLPTH--------TRKPLALEEYKLDNGTIVGFPGAVPYEGENLMYEPCD  413 (568)
Q Consensus       350 ------~~~--GnVG~~~A~~L~~~GakvvaVsD~--------GiD~~~L~~~~~~~g~v~~~~ga~~i~~~~ll~~~cD  413 (568)
                            .+|  ||||+++|++|++.|||||+|||+        |||+++|.++++++|++.+||+++.+++ ++|+++||
T Consensus       242 l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~-~il~~~~D  320 (501)
T 3mw9_A          242 FGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG-SILEVDCD  320 (501)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS-CGGGSCCS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc-ccccccce
Confidence                  011  999999999999999999999997        9999999999999999999999999864 89999999


Q ss_pred             EEeeccccCCCChhhHhcccceEEEecCCcchHHHHHHHhccCCCcccccCc-------------HHHHhhccC------
Q psy8846         414 IFVPAAVEKVITKNNAHKIQAKIIAEAANESVQESLERRFGNVGGRIPVTPS-------------ESFQKRISG------  474 (568)
Q Consensus       414 IliPaAl~~~It~~na~~i~AkiIvE~AN~~~~~~l~~~l~~~GggI~vvPd-------------e~~q~~~~~------  474 (568)
                      ||+|||++|+||++||++|+||+||||||+|+++.+.+.|.++  ||+|+||             ||+||.++.      
T Consensus       321 IliPcA~~n~I~~~na~~l~akiV~EgAN~p~T~eA~~iL~~r--GIl~~PD~~aNAGGV~vSy~E~~qn~~~~~~grl~  398 (501)
T 3mw9_A          321 ILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER--NIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLT  398 (501)
T ss_dssp             EEEECSSSCCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHT--TCEEECHHHHTTHHHHHHHHHHHHHHHCSCTTTTT
T ss_pred             EEeeccccCccCHhHHHHcCceEEEeCCCCcCCHHHHHHHHHC--CCEEEChHHhcCchHHhhHHHHHhccccccccccc
Confidence            9999999999999999999999999999999877777777776  5999999             899998866      


Q ss_pred             --------CCcHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHhccCCCCCh
Q psy8846         475 --------ASEKDIVHSGL------------------------------------DYTMERSARAIMKTAMKYNLGHLDI  510 (568)
Q Consensus       475 --------~we~e~V~~~L------------------------------------~~~M~~a~~~V~~~a~~~~~~~~dl  510 (568)
                              +|..|+|+++|                                    +++|.++|++|++++++++.+ +||
T Consensus       399 ~~~e~~~~~w~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ga~e~d~v~sgL~~~m~~a~~~v~~~a~~~~~~-~~l  477 (501)
T 3mw9_A          399 FKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLG-LDL  477 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTCCCCCCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT-TCH
T ss_pred             hhhhcccccccHHHHHHHHHhhhcccccccccCchHHHHHHHcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCH
Confidence                    37666555554                                    555999999999999999854 799


Q ss_pred             hhhhhhheee-c-ccCccccee
Q psy8846         511 NAHACVTGKP-I-NQGGIHGRI  530 (568)
Q Consensus       511 R~AAyi~Ai~-i-~a~~~~G~~  530 (568)
                      |+|||++||. | +++..+|+.
T Consensus       478 RtAAy~~ai~rv~~a~~~~G~~  499 (501)
T 3mw9_A          478 RTAAYVNAIEKVFRVYNEAGVT  499 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcc
Confidence            9999999999 7 999999975
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Back     alignment and structure
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Back     alignment and structure
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} Back     alignment and structure
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Back     alignment and structure
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Back     alignment and structure
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Back     alignment and structure
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* Back     alignment and structure
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Back     alignment and structure
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Back     alignment and structure
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d1hwxa2208 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B 3e-57
d1hwxa2208 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B 4e-29
d1hwxa2208 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B 1e-04
d1b26a2175 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo 5e-34
d1b26a2175 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo 2e-09
d1v9la2176 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba 7e-33
d1v9la2176 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba 4e-09
d1gtma2178 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae 1e-32
d1gtma2178 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae 7e-09
d1bgva2194 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr 2e-29
d1bgva2194 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr 4e-07
d1leha2134 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus 2e-24
d1c1da2148 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rh 2e-20
d1hwxa1293 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( 3e-15
d1hwxa1 293 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( 3e-09
d1hwxa1293 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( 4e-08
d1gtma1239 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa 5e-08
d1gtma1 239 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa 3e-04
d1b26a1234 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm 1e-07
d1b26a1 234 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm 0.003
d1leha1230 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu 4e-06
d1leha1 230 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu 4e-06
d1bgva1 255 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost 4e-06
d1bgva1255 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost 5e-06
d1v9la1242 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob 4e-05
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  188 bits (479), Expect = 3e-57
 Identities = 109/164 (66%), Positives = 132/164 (80%)

Query: 169 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEIS 228
             ++P FF MVE FF R   I EDKLVED+K R T E K+ +VRGIL  ++PC+H++ +S
Sbjct: 3   REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLS 62

Query: 229 FPVRRDSGDYEIITGYRAQHSTHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPF 288
           FP+RRD G +E+I GYRAQHS  RTPCKGGIR+S DVS DEVKAL++LMT+KCA VDVPF
Sbjct: 63  FPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122

Query: 289 GGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFKAVPG 332
           GGAKAG+KINPKNY++ +LEKITRRFT+ELAKKGFIG    VP 
Sbjct: 123 GGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPA 166
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208 Back     information, alignment and structure
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208 Back     information, alignment and structure
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175 Back     information, alignment and structure
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175 Back     information, alignment and structure
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176 Back     information, alignment and structure
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176 Back     information, alignment and structure
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178 Back     information, alignment and structure
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178 Back     information, alignment and structure
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194 Back     information, alignment and structure
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194 Back     information, alignment and structure
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 134 Back     information, alignment and structure
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 148 Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239 Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239 Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234 Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234 Back     information, alignment and structure
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 Back     information, alignment and structure
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255 Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255 Back     information, alignment and structure
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d1hwxa2208 Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 100.0
d1b26a2175 Glutamate dehydrogenase {Thermotoga maritima [TaxI 100.0
d1gtma2178 Glutamate dehydrogenase {Archaeon Pyrococcus furio 100.0
d1bgva2194 Glutamate dehydrogenase {Clostridium symbiosum [Ta 100.0
d1v9la2176 Glutamate dehydrogenase {Pyrobaculum islandicum [T 100.0
d1hwxa1293 Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 100.0
d1hwxa2208 Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 100.0
d1gtma1239 Glutamate dehydrogenase {Archaeon Pyrococcus furio 100.0
d1b26a1234 Glutamate dehydrogenase {Thermotoga maritima [TaxI 100.0
d1bgva1255 Glutamate dehydrogenase {Clostridium symbiosum [Ta 100.0
d1v9la1242 Glutamate dehydrogenase {Pyrobaculum islandicum [T 100.0
d1b26a2175 Glutamate dehydrogenase {Thermotoga maritima [TaxI 100.0
d1gtma2178 Glutamate dehydrogenase {Archaeon Pyrococcus furio 99.98
d1bgva2194 Glutamate dehydrogenase {Clostridium symbiosum [Ta 99.97
d1v9la2176 Glutamate dehydrogenase {Pyrobaculum islandicum [T 99.97
d1leha1230 Leucine dehydrogenase {Bacillus sphaericus [TaxId: 99.96
d1leha2134 Leucine dehydrogenase {Bacillus sphaericus [TaxId: 99.96
d1c1da1201 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 99.95
d1c1da2148 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 99.95
d1leha2134 Leucine dehydrogenase {Bacillus sphaericus [TaxId: 99.08
d1c1da2148 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 98.8
d2pgda2176 6-phosphogluconate dehydrogenase {Sheep (Ovis orie 89.6
d1vpda2161 Hydroxyisobutyrate dehydrogenase {Salmonella typhi 88.77
d1li4a1163 S-adenosylhomocystein hydrolase {Human (Homo sapie 85.3
d1yqga2152 Pyrroline-5-carboxylate reductase ProC {Neisseria 84.68
d2f1ka2165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 83.85
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 83.51
d2ahra2152 Pyrroline-5-carboxylate reductase ProC {Streptococ 82.06
d1pjca1168 L-alanine dehydrogenase {Phormidium lapideum [TaxI 81.53
d3cuma2162 Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru 81.42
d1bg6a2184 N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A 80.82
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-54  Score=418.91  Aligned_cols=180  Identities=62%  Similarity=1.044  Sum_probs=172.6

Q ss_pred             CCCCCCHHHHHHHHHhhhhhhccccchhhhhhccchhhhhhhhhhhhhhcCCCCcEEEEEEeEEcCCCcEEEEeeEEEEe
Q psy8846         169 TAENPKFFDMVEFFFHRACQIAEDKLVEDIKGRMTIEDKKKKVRGILLGMQPCDHIIEISFPVRRDSGDYEIITGYRAQH  248 (568)
Q Consensus       169 T~~~~~~~~~~~~~~~kAa~ildpk~~~~l~~~~~~~~~r~~~~~I~~~I~~~~rv~~v~~pv~~d~G~~~~~~gyrv~h  248 (568)
                      +..+|+|+++|+++|++|+.++.+.+.|+|+.++..+++.+.+++++++|++|+++++|+|||++|||++++|+||||||
T Consensus         3 ~~~~p~F~~~v~~~f~~a~~~~e~~l~e~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~v~~pv~~d~G~~~~~~gyR~qH   82 (208)
T d1hwxa2           3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQH   82 (208)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHhcCCCeEEEEEEEEEECCCCEEEeccEEEEE
Confidence            45789999999999999999998878888988888888888999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeeCCCCHHHHHHHHHHhhHhhhhcCCCCCCceeEeeCCCCCCCHHHHHHHHHHHHHHHhhcCcccccc
Q psy8846         249 STHRTPCKGGIRFSDDVSRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKNYSENELEKITRRFTLELAKKGFIGEFK  328 (568)
Q Consensus       249 ~~~~GP~kGGiR~~p~v~~dev~aLA~~MT~K~Al~~lP~GGaKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  328 (568)
                      |+++||+||||||||+++++||++||+||||||||+|||||||||||.+||+++|+.||||+||+|+.+|.++++|||+.
T Consensus        83 n~~lGP~kGGiR~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~igp~~  162 (208)
T d1hwxa2          83 SHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGV  162 (208)
T ss_dssp             CCSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCGGGSCHHHHHHHHHHHHHHHHHTTCCBTTT
T ss_pred             CCchhccCCCceEChhhhHHHHHHHHHHHHHHHHhhcccccCccceeecCCCCCCHHHHHHHHHHHHHHhhccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc----ccccch---hhhcccCc
Q psy8846         329 AVPGAR----AREGNV---TFNLLFHY  348 (568)
Q Consensus       329 dipapD----~~~maw---~y~~~~G~  348 (568)
                      ||||||    +++|+|   +|+++.|+
T Consensus       163 dIpApDvgT~~~eM~wi~d~y~~~~g~  189 (208)
T d1hwxa2         163 DVPAPNMSTGEREMSWIADTYASTIGH  189 (208)
T ss_dssp             EEEECBTTBCHHHHHHHHHHHHTTGGG
T ss_pred             CccCccccccHHHHHHHHhhhhhhcCC
Confidence            999999    999999   89877554
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Back     information, alignment and structure
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Back     information, alignment and structure
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Back     information, alignment and structure
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Back     information, alignment and structure
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Back     information, alignment and structure