Psyllid ID: psy8863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN
ccccccccccEEEEEccccccccccEEEEEEcccccHHHHHHHcccccccEEEEEEEEEEccccEEEEEEcEEEEEcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccHHHHHccccccHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHccccccccc
ccccccccEEEEEEEcccccccccEEEEEEEcccccHHHHHHHHHcccccEEEEEEEEEEccccEEEEEHHHHHHHHHHccccccHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHccHHHHEEHcHcHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccccHHccHHHHHHHHcccccHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccEEEEcccEEEcHccccccccccccccHEEEEEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEccccEEEEEEEHHHHHHHHcccccHHHHcccccEcccc
MLKRVMGKISFIMLqdtsgpdsngkiQLYISNEIigknlytdfknydigdiigakgtlfktntgelsIKVSSLKLITKslrplpnkfqKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFmekndfmevetpilhnkpggaiakpfithhnslNMKMFLRIAPELYLKRLIIGGFNKIFEINKNfrnegisprhnpeftMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKytpqyneidLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETtetklwnptyitnypteisplarksniennniTERFELFIIGNEiangfselndpeeqsVRFKNQIDLKneingelssyydtdyihaleygmppasgcgigvDRLIMLLTnsknirdvilfphlrnen
MLKRVMGKISFIMlqdtsgpdsnGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITkslrplpnkfqklsnqeikyrHRYIDLiinentrkvfKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFrnegisprhnpEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIkkytpqyneIDLQNKLFLKSELKKInpkfnqkkiLNNLKKDILQLMLFEETtetklwnptyitnypteisplarkSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNsknirdvilfphlrnen
MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFnqkkilnnlkkdilqlMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN
********ISFIML*********GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSE**********FKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPH*****
*LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDL*N*INGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR***
MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN
******GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
B2JIY1512 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.847 0.606 1e-168
B2SXV7518 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.837 0.613 1e-167
Q13WZ5513 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.846 0.613 1e-167
Q8Y0L5510 Lysine--tRNA ligase OS=Ra yes N/A 0.981 0.850 0.601 1e-166
A4JFZ6508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.597 1e-166
A9AGV1508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.597 1e-166
Q0BDR2508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.590 1e-165
B1YT20508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.590 1e-165
Q2SXD6508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.592 1e-165
A3NB96508 Lysine--tRNA ligase OS=Bu yes N/A 0.981 0.854 0.588 1e-165
>sp|B2JIY1|SYK_BURP8 Lysine--tRNA ligase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=lysS PE=3 SV=1 Back     alignment and function desciption
 Score =  593 bits (1528), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 341/442 (77%), Gaps = 8/442 (1%)

Query: 1   MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
           MLKRVMGK SF  ++D SG     +IQ +I+   +G+  Y  FK +D+GDI+ AKG LF+
Sbjct: 79  MLKRVMGKASFATVRDGSG-----QIQFFITPADVGEATYEAFKKWDLGDIVAAKGVLFR 133

Query: 61  TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
           TN GELS++ + L+L++K+LRPLP+KF  L++QE++YR RY+DLI+ +  RK F  RT+ 
Sbjct: 134 TNKGELSVRCTELRLLSKALRPLPDKFHGLADQEMRYRQRYVDLIVTDEARKTFVARTKA 193

Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
           +SSIR FM + DFMEVETP+LH  PGGA AKPF+THHN+L+M+MFLRIAPELYLKRL++G
Sbjct: 194 VSSIRKFMAEADFMEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELYLKRLVVG 253

Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
           GF ++FEIN+NFRNEG+SPRHNPEFTM+EFYAAYT+Y WLM FTE++I++  +D +G   
Sbjct: 254 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYKWLMDFTEQLIRQAAVDALGNAA 313

Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNN 300
           I YQGR LD SK F +LTI +AI+KY PQY++  L +  FL++ELKK      Q   LN 
Sbjct: 314 ITYQGRELDLSKPFHRLTITQAIQKYAPQYSDAQLADGAFLRTELKKFGVDATQPAFLNA 373

Query: 301 LKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
                LQL LFEET E++LW PT+I +YP E+SPLAR S+   + ITERFELFI G EIA
Sbjct: 374 -GIGALQLALFEETAESQLWEPTFIIDYPIEVSPLARASD-SVDGITERFELFITGREIA 431

Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
           NGFSELNDPE+Q+ RFK Q+D K+    E + YYD DYI ALEYGMPPA GCGIG+DRL+
Sbjct: 432 NGFSELNDPEDQAARFKKQVDQKD-AGDEEAMYYDADYIRALEYGMPPAGGCGIGIDRLV 490

Query: 421 MLLTNSKNIRDVILFPHLRNEN 442
           MLLT+S +IRDVILFPHLR E+
Sbjct: 491 MLLTDSPSIRDVILFPHLRRED 512

Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 6
>sp|B2SXV7|SYK_BURPP Lysine--tRNA ligase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|Q13WZ5|SYK_BURXL Lysine--tRNA ligase OS=Burkholderia xenovorans (strain LB400) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|Q8Y0L5|SYK_RALSO Lysine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|A4JFZ6|SYK_BURVG Lysine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|A9AGV1|SYK_BURM1 Lysine--tRNA ligase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|Q0BDR2|SYK_BURCM Lysine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|B1YT20|SYK_BURA4 Lysine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6) GN=lysS PE=3 SV=1 Back     alignment and function description
>sp|Q2SXD6|SYK_BURTA Lysine--tRNA ligase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=lysS PE=1 SV=1 Back     alignment and function description
>sp|A3NB96|SYK_BURP6 Lysine--tRNA ligase OS=Burkholderia pseudomallei (strain 668) GN=lysS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
399018997518 lysyl-tRNA synthetase (class II) [Herbas 0.993 0.847 0.638 1e-175
398834201514 lysyl-tRNA synthetase (class II) [Herbas 0.993 0.854 0.635 1e-174
237745577511 lysyl-tRNA synthetase [Oxalobacter formi 0.981 0.849 0.641 1e-173
340788304508 lysyl-tRNA synthetase [Collimonas fungiv 0.984 0.856 0.640 1e-173
409406594513 lysyl-tRNA synthetase [Herbaspirillum sp 0.993 0.855 0.638 1e-172
237747767511 lysyl-tRNA synthetase [Oxalobacter formi 0.984 0.851 0.638 1e-172
300312097513 lysyl-tRNA synthetase [Herbaspirillum se 0.993 0.855 0.635 1e-172
415912113513 Lysyl-tRNA synthetase [Herbaspirillum fr 0.993 0.855 0.633 1e-171
329913867510 Lysyl-tRNA synthetase (class II) [Oxalob 0.984 0.852 0.619 1e-168
186476208512 lysyl-tRNA synthetase [Burkholderia phym 0.981 0.847 0.606 1e-167
>gi|399018997|ref|ZP_10721147.1| lysyl-tRNA synthetase (class II) [Herbaspirillum sp. CF444] gi|398098646|gb|EJL88928.1| lysyl-tRNA synthetase (class II) [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 282/442 (63%), Positives = 352/442 (79%), Gaps = 3/442 (0%)

Query: 1   MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
           MLKRVMGK SF  LQD+SGP ++G++QLY++N++ G+  +  FK+YD+GDI+GA+G+LFK
Sbjct: 80  MLKRVMGKASFATLQDSSGPRADGRMQLYVTNDVTGEAAHAAFKHYDLGDILGAEGSLFK 139

Query: 61  TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
           T TGELS+KV+ L+LITKSLRPLP+KF  LS+QE KYR RY+DLI++E TR+ FK RT  
Sbjct: 140 TKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVDLIMSEETRRTFKARTAA 199

Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
           +SSIR FMEKNDFMEVETP+LH  PGGA AKPFITHHN+L+M+MFLRIAPELYLKRL++G
Sbjct: 200 MSSIRRFMEKNDFMEVETPMLHTIPGGAAAKPFITHHNALDMQMFLRIAPELYLKRLVVG 259

Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
           GFN++FE+N+NFRNEG+SPRHNPEFTM+EFYAAY +Y WLM FTE++I++  +D  GT  
Sbjct: 260 GFNRVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMTFTEQVIRQAAIDAHGTAT 319

Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNN 300
           + YQGR LD +K F++LTI  AIKKY P+Y +  L +  FL++ LKK   K +Q   L  
Sbjct: 320 LTYQGRELDLAKPFQRLTITGAIKKYAPEYTDEQLNDIDFLRTALKKFGVKTDQAP-LAK 378

Query: 301 LKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
                LQL LFEET E++LW PTYI +YP E+SPLAR S+     ITERFELFI G EIA
Sbjct: 379 AGIGALQLALFEETAESQLWEPTYIVDYPVEVSPLARASDT-VAGITERFELFITGREIA 437

Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
           NGFSELND E+Q+ RF+ Q+  K+    E + YYD DYI ALEYGMPPA GCGIG+DRL+
Sbjct: 438 NGFSELNDAEDQAARFQAQVAAKD-AGDEEAMYYDADYIRALEYGMPPAGGCGIGIDRLM 496

Query: 421 MLLTNSKNIRDVILFPHLRNEN 442
           ML+T+S NIRDVILFPHLR E+
Sbjct: 497 MLITDSPNIRDVILFPHLRRED 518

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|398834201|ref|ZP_10592062.1| lysyl-tRNA synthetase (class II) [Herbaspirillum sp. YR522] gi|398220563|gb|EJN07009.1| lysyl-tRNA synthetase (class II) [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|237745577|ref|ZP_04576057.1| lysyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229376928|gb|EEO27019.1| lysyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] Back     alignment and taxonomy information
>gi|340788304|ref|YP_004753769.1| lysyl-tRNA synthetase [Collimonas fungivorans Ter331] gi|340553571|gb|AEK62946.1| Lysyl-tRNA synthetase (class II) [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|409406594|ref|ZP_11255056.1| lysyl-tRNA synthetase [Herbaspirillum sp. GW103] gi|386435143|gb|EIJ47968.1| lysyl-tRNA synthetase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|237747767|ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gi|229379129|gb|EEO29220.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Back     alignment and taxonomy information
>gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300074882|gb|ADJ64281.1| lysyl-tRNA synthetase (Class II) protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|415912113|ref|ZP_11553494.1| Lysyl-tRNA synthetase [Herbaspirillum frisingense GSF30] gi|407762149|gb|EKF71055.1| Lysyl-tRNA synthetase [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|329913867|ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] gi|327545273|gb|EGF30527.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|186476208|ref|YP_001857678.1| lysyl-tRNA synthetase [Burkholderia phymatum STM815] gi|238691313|sp|B2JIY1.1|SYK_BURP8 RecName: Full=Lysine--tRNA ligase; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS gi|184192667|gb|ACC70632.1| lysyl-tRNA synthetase [Burkholderia phymatum STM815] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
UNIPROTKB|P0A8N5505 lysU [Escherichia coli K-12 (t 0.966 0.845 0.525 7.4e-121
UNIPROTKB|P0A8N3505 lysS [Escherichia coli K-12 (t 0.966 0.845 0.525 1.8e-119
TIGR_CMR|CBU_0430498 CBU_0430 "lysyl-tRNA synthetas 0.968 0.859 0.486 1e-114
UNIPROTKB|Q9KU60510 lysS "Lysine--tRNA ligase" [Vi 0.957 0.829 0.492 1.4e-112
TIGR_CMR|VC_0664510 VC_0664 "lysyl-tRNA synthetase 0.957 0.829 0.492 1.4e-112
TIGR_CMR|GSU_2271491 GSU_2271 "lysyl-tRNA synthetas 0.963 0.867 0.489 9.7e-112
TIGR_CMR|SO_0992500 SO_0992 "lysyl-tRNA synthetase 0.968 0.856 0.484 1.5e-108
TIGR_CMR|CHY_2365488 CHY_2365 "lysyl-tRNA synthetas 0.963 0.872 0.469 1.2e-104
TIGR_CMR|CJE_0450501 CJE_0450 "lysyl-tRNA synthetas 0.959 0.846 0.477 1.8e-101
TIGR_CMR|BA_0076499 BA_0076 "lysyl-tRNA synthetase 0.968 0.857 0.453 7.9e-101
UNIPROTKB|P0A8N5 lysU [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 231/440 (52%), Positives = 312/440 (70%)

Query:     1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
             M +R+MGK SF+ LQD  G     +IQLY++ + + + +Y D FK +D+GDIIGA+GTLF
Sbjct:    75 MTRRIMGKASFVTLQDVGG-----RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLF 129

Query:    60 KTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQ 119
             KT TGELSI  + L+L+TK+LRPLP+KF  L +QE++YR RY+DLI N+ +R+ F  R++
Sbjct:   130 KTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 189

Query:   120 IISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
             I+++IR FM    FMEVETP++   PGGA A+PFITHHN+L++ M+LRIAPELYLKRL++
Sbjct:   190 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVV 249

Query:   180 GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239
             GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y AY +Y  L++ TE + + +  + +GTT
Sbjct:   250 GGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT 309

Query:   240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXX 299
             K+ Y   + DF K FEKLT+ EAIKKY P+ +  DL N    K+  + I           
Sbjct:   310 KVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIG-----ITVEK 364

Query:   300 XXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEI 359
                       +F+E  E  L  PT+IT YP E+SPLAR++++ N  IT+RFE FI G EI
Sbjct:   365 SWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV-NPEITDRFEFFIGGREI 423

Query:   360 ANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRL 419
              NGFSELND E+Q+ RF+ Q++ K   + E + +YD DY+ ALEYG+PP +G GIG+DR+
Sbjct:   424 GNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYVTALEYGLPPTAGLGIGIDRM 482

Query:   420 IMLLTNSKNIRDVILFPHLR 439
             IML TNS  IRDVILFP +R
Sbjct:   483 IMLFTNSHTIRDVILFPAMR 502
GO:0016874 "ligase activity" evidence=IDA
GO:0004824 "lysine-tRNA ligase activity" evidence=IEA;IGI;IDA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IGI
GO:0006430 "lysyl-tRNA aminoacylation" evidence=IEA;IGI;IDA
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0006412 "translation" evidence=IEA;IGI
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|P0A8N3 lysS [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0430 CBU_0430 "lysyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KU60 lysS "Lysine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0664 VC_0664 "lysyl-tRNA synthetase, heat inducible" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2271 GSU_2271 "lysyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0992 SO_0992 "lysyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2365 CHY_2365 "lysyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0450 CJE_0450 "lysyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0076 BA_0076 "lysyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1H372SYK_METFK6, ., 1, ., 1, ., 60.60180.97280.8447yesN/A
Q0BDR2SYK_BURCM6, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
A1V5L6SYK_BURMS6, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
B2U8U9SYK_RALPJ6, ., 1, ., 1, ., 60.59950.98190.8443yesN/A
Q63SN9SYK_BURPS6, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
Q0KCG3SYK_CUPNH6, ., 1, ., 1, ., 60.60180.98190.8443yesN/A
Q473I5SYK_CUPPJ6, ., 1, ., 1, ., 60.60180.98190.8410yesN/A
Q7NZ62SYK_CHRVO6, ., 1, ., 1, ., 60.52830.97050.8545yesN/A
C5CSG3SYK_VARPS6, ., 1, ., 1, ., 60.56330.97730.8307yesN/A
Q7VZ37SYK_BORPE6, ., 1, ., 1, ., 60.57230.98190.8577yesN/A
B2JIY1SYK_BURP86, ., 1, ., 1, ., 60.60630.98190.8476yesN/A
Q9JYU6SYK_NEIMB6, ., 1, ., 1, ., 60.53960.97050.8528yesN/A
A6SXF3SYK_JANMA6, ., 1, ., 1, ., 60.60040.98410.8512yesN/A
B4RP57SYK_NEIG26, ., 1, ., 1, ., 60.53280.97050.8528yesN/A
B1XTS4SYK_POLNS6, ., 1, ., 1, ., 60.59060.97510.8385yesN/A
A9AGV1SYK_BURM16, ., 1, ., 1, ., 60.59720.98190.8543yesN/A
A4G778SYK_HERAR6, ., 1, ., 1, ., 60.60270.98410.8512yesN/A
Q9JTT7SYK_NEIMA6, ., 1, ., 1, ., 60.53960.97050.8528yesN/A
Q3SKD9SYK_THIDA6, ., 1, ., 1, ., 60.54640.97050.8562yesN/A
A1K5J9SYK_AZOSB6, ., 1, ., 1, ., 60.56460.96830.856yesN/A
Q8Y0L5SYK_RALSO6, ., 1, ., 1, ., 60.60180.98190.8509yesN/A
B1YT20SYK_BURA46, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
A4JFZ6SYK_BURVG6, ., 1, ., 1, ., 60.59720.98190.8543yesN/A
Q3JQP3SYK_BURP16, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
Q5NY31SYK_AROAE6, ., 1, ., 1, ., 60.57820.97050.8545yesN/A
Q2SXD6SYK_BURTA6, ., 1, ., 1, ., 60.59270.98190.8543yesN/A
B1JUZ7SYK_BURCC6, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
A3ML91SYK_BURM76, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
C1DB68SYK_LARHH6, ., 1, ., 1, ., 60.56680.97050.8528yesN/A
Q1LPK6SYK_RALME6, ., 1, ., 1, ., 60.60670.97730.8388yesN/A
B3R478SYK_CUPTR6, ., 1, ., 1, ., 60.60400.98190.8394yesN/A
Q82SH1SYK_NITEU6, ., 1, ., 1, ., 60.55530.97050.8545yesN/A
A2SDC3SYK_METPP6, ., 1, ., 1, ., 60.53160.97050.8444yesN/A
A0K8P2SYK_BURCH6, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
A4SYX2SYK_POLSQ6, ., 1, ., 1, ., 60.59500.97510.8385yesN/A
Q7WK46SYK_BORBR6, ., 1, ., 1, ., 60.57230.98190.8577yesN/A
Q62IZ9SYK_BURMA6, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
A3NB96SYK_BURP66, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
Q47C53SYK_DECAR6, ., 1, ., 1, ., 60.56230.96830.8542yesN/A
B2SXV7SYK_BURPP6, ., 1, ., 1, ., 60.61310.98190.8378yesN/A
B4EDB2SYK_BURCJ6, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
A3NX27SYK_BURP06, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
A1KUN1SYK_NEIMF6, ., 1, ., 1, ., 60.53960.97050.8528yesN/A
A2SAT3SYK_BURM96, ., 1, ., 1, ., 60.58820.98190.8543yesN/A
Q13WZ5SYK_BURXL6, ., 1, ., 1, ., 60.61310.98190.8460yesN/A
A9IQY2SYK_BORPD6, ., 1, ., 1, ., 60.57230.98190.8577yesN/A
Q1BHT1SYK_BURCA6, ., 1, ., 1, ., 60.59040.98190.8543yesN/A
Q7W8T6SYK_BORPA6, ., 1, ., 1, ., 60.57010.98190.8577yesN/A
Q5WVS0SYK_LEGPL6, ., 1, ., 1, ., 60.54070.96150.8568yesN/A
Q5F6U2SYK_NEIG16, ., 1, ., 1, ., 60.53510.97050.8528yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.60.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 0.0
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 0.0
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 0.0
PLN02502553 PLN02502, PLN02502, lysyl-tRNA synthetase 1e-170
PRK12445505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 1e-169
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 1e-163
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 1e-123
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 1e-114
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 5e-94
PTZ00385659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 3e-93
PTZ00417585 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona 1e-86
TIGR00462290 TIGR00462, genX, EF-P lysine aminoacylase GenX 8e-73
COG2269322 COG2269, COG2269, Truncated, possibly inactive, ly 3e-69
PRK09350306 PRK09350, PRK09350, poxB regulator PoxA; Provision 8e-61
COG0017435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 2e-46
cd04322108 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon r 2e-42
TIGR00458428 TIGR00458, aspS_nondisc, nondiscriminating asparty 1e-39
cd00776322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 2e-36
PRK05159437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 2e-35
cd00777280 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c 2e-28
TIGR00457453 TIGR00457, asnS, asparaginyl-tRNA synthetase 4e-28
TIGR00459 583 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba 5e-25
COG0173 585 COG0173, AspS, Aspartyl-tRNA synthetase [Translati 4e-23
PLN02850530 PLN02850, PLN02850, aspartate-tRNA ligase 2e-19
PRK06462335 PRK06462, PRK06462, asparagine synthetase A; Revie 3e-19
PRK00476 588 PRK00476, aspS, aspartyl-tRNA synthetase; Validate 8e-19
PLN02903 652 PLN02903, PLN02903, aminoacyl-tRNA ligase 8e-18
PRK12820 706 PRK12820, PRK12820, bifunctional aspartyl-tRNA syn 2e-17
PRK03932450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 6e-16
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-15
PTZ00401550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 5e-15
COG0173585 COG0173, AspS, Aspartyl-tRNA synthetase [Translati 1e-12
PRK00476588 PRK00476, aspS, aspartyl-tRNA synthetase; Validate 3e-12
TIGR00459583 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba 6e-12
cd0410085 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter 9e-11
pfam0133675 pfam01336, tRNA_anti, OB-fold nucleic acid binding 1e-09
PLN02903652 PLN02903, PLN02903, aminoacyl-tRNA ligase 1e-08
PTZ00425586 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis 1e-06
PRK12820 706 PRK12820, PRK12820, bifunctional aspartyl-tRNA syn 6e-06
PLN02603565 PLN02603, PLN02603, asparaginyl-tRNA synthetase 1e-04
PRK09537417 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe 2e-04
cd04317135 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina 2e-04
TIGR02367242 TIGR02367, PylS_Cterm, pyrrolysyl-tRNA synthetase, 3e-04
PLN02221572 PLN02221, PLN02221, asparaginyl-tRNA synthetase 0.001
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 0.003
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information 
 Score =  690 bits (1784), Expect = 0.0
 Identities = 235/444 (52%), Positives = 318/444 (71%), Gaps = 18/444 (4%)

Query: 1   MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
           MLKRVMGK SF  LQD SG     +IQLY+S + +G+     FK  D+GDIIG +GTLFK
Sbjct: 64  MLKRVMGKASFATLQDGSG-----RIQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFK 118

Query: 61  TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
           T TGELS+K + L L+TKSLRPLP+KF  L++ E +YR RY+DLI+N  +R+ F+KR++I
Sbjct: 119 TKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKI 178

Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
           IS+IR F++   F+EVETP+L    GGA A+PFITHHN+L++ ++LRIAPELYLKRLI+G
Sbjct: 179 ISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVG 238

Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
           GF +++EI +NFRNEGI  RHNPEFTM+EFY AY +Y  +M  TE++I+ +    +GTTK
Sbjct: 239 GFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTK 298

Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTP-QYNEIDLQNKLFLKSELK-KINPKFNQKKIL 298
           + YQG  +DF   F++LT+++AIK+YT   ++++  +    L  EL  ++   +   K++
Sbjct: 299 VTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLI 358

Query: 299 NNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNE 358
           N          LFEE  E KL  PT+IT+YP EISPLA++   E+  +TERFELFI G E
Sbjct: 359 N---------ELFEEFVEPKLIQPTFITDYPVEISPLAKRHR-EDPGLTERFELFIGGRE 408

Query: 359 IANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDR 418
           IAN FSELNDP +Q  RF+ Q++ K   + E + + D D++ ALEYGMPP  G GIG+DR
Sbjct: 409 IANAFSELNDPIDQRERFEAQVEAKEAGDDE-AMFMDEDFLRALEYGMPPTGGLGIGIDR 467

Query: 419 LIMLLTNSKNIRDVILFPHLRNEN 442
           L+MLLT+S +IRDVILFP +R E 
Sbjct: 468 LVMLLTDSPSIRDVILFPLMRPEK 491

Length = 491
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX Back     alignment and domain information
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|239817 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed Back     alignment and domain information
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>gnl|CDD|188213 TIGR02367, PylS_Cterm, pyrrolysyl-tRNA synthetase, C-terminal region Back     alignment and domain information
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
PRK12445505 lysyl-tRNA synthetase; Reviewed 100.0
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 100.0
PLN02502553 lysyl-tRNA synthetase 100.0
PTZ00417585 lysine-tRNA ligase; Provisional 100.0
PTZ00385659 lysyl-tRNA synthetase; Provisional 100.0
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 100.0
KOG1885|consensus560 100.0
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 100.0
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 100.0
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 100.0
PTZ00401550 aspartyl-tRNA synthetase; Provisional 100.0
PLN02850530 aspartate-tRNA ligase 100.0
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 100.0
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 100.0
PLN02532633 asparagine-tRNA synthetase 100.0
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 100.0
PLN02603565 asparaginyl-tRNA synthetase 100.0
PTZ00425586 asparagine-tRNA ligase; Provisional 100.0
PLN02221572 asparaginyl-tRNA synthetase 100.0
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 100.0
PLN02903652 aminoacyl-tRNA ligase 100.0
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 100.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 100.0
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 100.0
KOG0556|consensus533 100.0
KOG0554|consensus446 100.0
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 100.0
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 100.0
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 100.0
PRK06462335 asparagine synthetase A; Reviewed 100.0
KOG0555|consensus545 100.0
KOG2411|consensus628 100.0
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 100.0
PRK09350306 poxB regulator PoxA; Provisional 100.0
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 100.0
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 100.0
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 99.82
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.74
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 99.73
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.73
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.72
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 99.69
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 99.67
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.65
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 99.64
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.63
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.58
PTZ00213348 asparagine synthetase A; Provisional 99.56
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 99.56
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 99.56
cd00645309 AsnA Asparagine synthetase (aspartate-ammonia liga 99.55
PLN02788402 phenylalanine-tRNA synthetase 99.54
PRK05425327 asparagine synthetase AsnA; Provisional 99.53
TIGR00669330 asnA aspartate--ammonia ligase, AsnA-type. The fac 99.45
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.41
cd0410085 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant 99.36
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 99.36
cd0431882 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod 99.35
cd0432186 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a 99.34
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.33
cd0432384 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a 99.31
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.08
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.02
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 99.0
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 98.76
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 98.74
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.72
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 98.59
PRK12420423 histidyl-tRNA synthetase; Provisional 98.52
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 98.46
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 98.43
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 98.4
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 98.38
KOG2784|consensus483 98.37
COG2502330 AsnA Asparagine synthetase A [Amino acid transport 98.35
KOG2783|consensus436 98.34
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 98.3
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 98.23
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 98.22
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 98.22
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 98.2
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 98.12
PRK09194 565 prolyl-tRNA synthetase; Provisional 98.03
PLN02972763 Histidyl-tRNA synthetase 97.97
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 97.96
CHL00201430 syh histidine-tRNA synthetase; Provisional 97.93
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.93
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 97.93
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 97.93
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 97.93
PLN02530487 histidine-tRNA ligase 97.9
TIGR00414418 serS seryl-tRNA synthetase. This model represents 97.9
PLN02908686 threonyl-tRNA synthetase 97.88
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 97.88
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 97.87
PRK08661477 prolyl-tRNA synthetase; Provisional 97.86
PRK12444639 threonyl-tRNA synthetase; Reviewed 97.82
PRK05431425 seryl-tRNA synthetase; Provisional 97.8
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 97.78
PRK12325439 prolyl-tRNA synthetase; Provisional 97.76
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 97.7
PRK03991613 threonyl-tRNA synthetase; Validated 97.55
PLN02837614 threonine-tRNA ligase 97.54
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 97.42
PLN02678448 seryl-tRNA synthetase 97.2
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 97.19
PRK04173456 glycyl-tRNA synthetase; Provisional 97.14
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 97.02
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 96.77
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 96.65
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 96.6
PLN02320502 seryl-tRNA synthetase 96.49
PRK00960517 seryl-tRNA synthetase; Provisional 96.26
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 96.05
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 95.87
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 95.86
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 95.8
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 95.36
KOG1936|consensus 518 95.31
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 95.26
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 94.95
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 94.84
COG0423 558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 94.76
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 94.73
KOG2324|consensus457 94.62
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 94.6
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 94.54
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 93.98
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 93.73
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 93.31
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 93.05
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 92.97
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 92.88
PRK14894 539 glycyl-tRNA synthetase; Provisional 92.7
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 92.02
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 91.09
PLN02900 936 alanyl-tRNA synthetase 90.12
PF03590244 AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 89.87
KOG2509|consensus455 89.51
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 89.01
PF10451256 Stn1: Telomere regulation protein Stn1; InterPro: 88.77
KOG1035|consensus1351 87.77
COG3111128 Periplasmic protein with OB-fold [Function unknown 87.27
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 86.83
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 86.54
KOG0188|consensus 895 85.94
PRK06461129 single-stranded DNA-binding protein; Reviewed 84.4
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 83.39
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 82.84
PF04076103 BOF: Bacterial OB fold (BOF) protein; InterPro: IP 82.7
PRK10053130 hypothetical protein; Provisional 81.28
PRK07080317 hypothetical protein; Validated 81.17
TIGR00156126 conserved hypothetical protein TIGR00156. As of th 80.29
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.6e-109  Score=861.55  Aligned_cols=430  Identities=53%  Similarity=0.954  Sum_probs=402.2

Q ss_pred             CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhh-hhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863           1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYT-DFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS   79 (442)
Q Consensus         1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~   79 (442)
                      +++|.+||++|++|||++     +.||||++++..+++.|+ .+.+|+.||+|.|+|++.++++|++||.+++++||++|
T Consensus        75 ~~~R~~Gk~~F~~lrD~~-----g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~  149 (505)
T PRK12445         75 MTRRIMGKASFVTLQDVG-----GRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKA  149 (505)
T ss_pred             EEEecCCCcEEEEEEeCC-----ccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecC
Confidence            478999999999999999     999999997766555564 46789999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863          80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS  159 (442)
Q Consensus        80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~  159 (442)
                      ..|||.+++++++.++|+++||||+++|+..+++|++||++++++|+||.++||+||+||+|++++|||++++|.|++++
T Consensus       150 ~~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~  229 (505)
T PRK12445        150 LRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNA  229 (505)
T ss_pred             CCCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863         160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT  239 (442)
Q Consensus       160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~  239 (442)
                      ++.++||+||||+|||+|+++|++||||||||||||++++||||||||||||++|+|++|+|+++|+||++++..+.+.+
T Consensus       230 ~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~  309 (505)
T PRK12445        230 LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT  309 (505)
T ss_pred             CCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999877


Q ss_pred             eeecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC
Q psy8863         240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL  319 (442)
Q Consensus       240 ~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~  319 (442)
                      ...+.+..++++.||+|+||.||++.+....++.+..+.+.+++.++++|+...+     .|++|+++.++++.++|+++
T Consensus       310 ~~~~~~~~i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~vE~~l  384 (505)
T PRK12445        310 KVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEK-----SWGLGRIVTEIFDEVAEAHL  384 (505)
T ss_pred             ceecCceeccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHHHHHHHhhc
Confidence            7777666678889999999999999998334555566788899999999987765     68899999999999999999


Q ss_pred             CCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHH
Q psy8863         320 WNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYI  399 (442)
Q Consensus       320 ~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl  399 (442)
                      .+|+||+|||.+++|||+.++ +||++++|||||++|+||+|||+|+|||++|+++|++++..+..|+++ ++.+|+|||
T Consensus       385 ~~P~Fv~dyP~~~splak~~~-~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e-~~~~de~yl  462 (505)
T PRK12445        385 IQPTFITEYPAEVSPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYV  462 (505)
T ss_pred             CCCEEEECCCchhCcccccCC-CCCCceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCc-cccchHHHH
Confidence            999999999999999998876 899999999999999999999999999999999999999888777776 777899999


Q ss_pred             HHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863         400 HALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN  442 (442)
Q Consensus       400 ~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~  442 (442)
                      +|++||+|||||||||||||+|++||.+|||||++||++++++
T Consensus       463 ~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~~  505 (505)
T PRK12445        463 TALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK  505 (505)
T ss_pred             HHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCCCC
Confidence            9999999999999999999999999999999999999999864

>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1885|consensus Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>KOG0556|consensus Back     alignment and domain information
>KOG0554|consensus Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>KOG0555|consensus Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PTZ00213 asparagine synthetase A; Provisional Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PRK05425 asparagine synthetase AsnA; Provisional Back     alignment and domain information
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2783|consensus Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1936|consensus Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324|consensus Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 Back     alignment and domain information
>KOG2509|consensus Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA Back     alignment and domain information
>KOG1035|consensus Back     alignment and domain information
>COG3111 Periplasmic protein with OB-fold [Function unknown] Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) Back     alignment and domain information
>PRK10053 hypothetical protein; Provisional Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>TIGR00156 conserved hypothetical protein TIGR00156 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4ex5_A529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 1e-162
1lyl_A504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 1e-137
1bbu_A504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 1e-135
3e9h_A493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 1e-117
4dpg_A513 Crystal Structure Of Human Lysrs: P38/aimp2 Complex 6e-83
3bju_A521 Crystal Structure Of Tetrameric Form Of Human Lysyl 6e-83
3a5z_A328 Crystal Structure Of Escherichia Coli Genx In Compl 2e-37
3a5y_A345 Crystal Structure Of Genx From Escherichia Coli In 2e-37
3g1z_A326 Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe 2e-36
3i7f_A548 Aspartyl Trna Synthetase From Entamoeba Histolytica 4e-19
1wyd_A429 Crystal Structure Of Aspartyl-Trna Synthetase From 1e-17
3nel_A438 Aspartyl-Trna Synthetase Complexed With Aspartic Ac 1e-17
1b8a_A438 Aspartyl-trna Synthetase Length = 438 2e-17
1n9w_A422 Crystal Structure Of The Non-Discriminating And Arc 2e-17
1eqr_A 590 Crystal Structure Of Free Aspartyl-Trna Synthetase 6e-17
1eqr_A590 Crystal Structure Of Free Aspartyl-Trna Synthetase 3e-09
1c0a_A 585 Crystal Structure Of The E. Coli Aspartyl-Trna Synt 7e-17
1c0a_A585 Crystal Structure Of The E. Coli Aspartyl-Trna Synt 2e-09
1krs_A120 Solution Structure Of The Anticodon Binding Domain 3e-16
1eov_A487 Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 1e-15
1asy_A490 Class Ii Aminoacyl Transfer Rna Synthetases: Crysta 1e-15
4ah6_A 617 Human Mitochondrial Aspartyl-Trna Synthetase Length 4e-13
4ah6_A617 Human Mitochondrial Aspartyl-Trna Synthetase Length 6e-09
3m4p_A456 Entamoeba Histolytica Asparaginyl-Trna Synthetase ( 1e-11
1efw_A 580 Crystal Structure Of Aspartyl-Trna Synthetase From 5e-11
1efw_A580 Crystal Structure Of Aspartyl-Trna Synthetase From 6e-09
2xgt_A435 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 3e-10
2xti_A437 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 4e-10
1x54_A434 Crystal Structure Of Asparaginyl-trna Synthetase Fr 4e-09
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  568 bits (1463), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 258/447 (57%), Positives = 330/447 (73%), Gaps = 18/447 (4%)
Query: 1   MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
           MLKRVMGK SF  +QD SG     +IQ +++   +G   Y  FK +D+GDI+ A+G LF+
Sbjct: 96  MLKRVMGKASFATVQDGSG-----QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR 150
Query: 61  TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
           TN GELS+K + L+L+ K+LRPLP+KF  L++QE +YR RY+DLI+   TR  F+ RT+ 
Sbjct: 151 TNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
           I+SIR FM   DFMEVETP+LH  PGGA AKPF+THHN+L+M+MFLRIAPELYLKRLI+G
Sbjct: 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVG 270
Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
           GF ++FEIN+NFRNEG+SPRHNPEFTM+EFYAAYT+Y WLM FTE++I++  +D +GT  
Sbjct: 271 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT 330
Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKIN-----PKFXXX 295
           I YQGR LD ++ F +LTI +AI+KY P Y +  L +  FL+SELK++      P F   
Sbjct: 331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNA 390
Query: 296 XXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFII 355
                         LFEET E +LW PT+I +YP E+SPLAR+S+     ITERFELFI 
Sbjct: 391 GIGALQLA------LFEETAEAQLWEPTFIIDYPIEVSPLARESDT-VAGITERFELFIT 443
Query: 356 GNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIG 415
           G EIANGFSELNDPE+Q+ RFK Q++ K+    E + ++D DYI ALEYGMPP  GCGIG
Sbjct: 444 GREIANGFSELNDPEDQAARFKKQVEQKD-AGDEEAMFFDADYIRALEYGMPPTGGCGIG 502
Query: 416 VDRLIMLLTNSKNIRDVILFPHLRNEN 442
           +DRL+MLLT+S  IRDV+LFPHLR E+
Sbjct: 503 IDRLVMLLTDSPTIRDVLLFPHLRRED 529
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 Back     alignment and structure
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 Back     alignment and structure
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 Back     alignment and structure
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 Back     alignment and structure
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 Back     alignment and structure
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 Back     alignment and structure
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 Back     alignment and structure
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 Back     alignment and structure
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 Back     alignment and structure
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 Back     alignment and structure
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 Back     alignment and structure
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 Back     alignment and structure
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 Back     alignment and structure
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 Back     alignment and structure
>pdb|1KRS|A Chain A, Solution Structure Of The Anticodon Binding Domain Of Escherichia Coli Lysyl-Trna Synthetase And Studies Of Its Interactions With Trna-Lys Length = 120 Back     alignment and structure
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 Back     alignment and structure
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 Back     alignment and structure
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 Back     alignment and structure
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 Back     alignment and structure
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 Back     alignment and structure
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 Back     alignment and structure
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 Back     alignment and structure
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 Back     alignment and structure
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 Back     alignment and structure
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 0.0
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 0.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 0.0
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 1e-165
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 3e-50
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 7e-50
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 2e-44
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 4e-44
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 2e-37
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 3e-37
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 2e-34
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 2e-33
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 5e-31
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 3e-16
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 3e-11
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 2e-15
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 3e-10
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 3e-04
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
 Score =  713 bits (1843), Expect = 0.0
 Identities = 260/442 (58%), Positives = 334/442 (75%), Gaps = 8/442 (1%)

Query: 1   MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
           MLKRVMGK SF  +QD SG     +IQ +++   +G   Y  FK +D+GDI+ A+G LF+
Sbjct: 96  MLKRVMGKASFATVQDGSG-----QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR 150

Query: 61  TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
           TN GELS+K + L+L+ K+LRPLP+KF  L++QE +YR RY+DLI+   TR  F+ RT+ 
Sbjct: 151 TNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210

Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
           I+SIR FM   DFMEVETP+LH  PGGA AKPF+THHN+L+M+MFLRIAPELYLKRLI+G
Sbjct: 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVG 270

Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
           GF ++FEIN+NFRNEG+SPRHNPEFTM+EFYAAYT+Y WLM FTE++I++  +D +GT  
Sbjct: 271 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT 330

Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNN 300
           I YQGR LD ++ F +LTI +AI+KY P Y +  L +  FL+SELK++      +    N
Sbjct: 331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVT-QPAFLN 389

Query: 301 LKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
                LQL LFEET E +LW PT+I +YP E+SPLAR+S+     ITERFELFI G EIA
Sbjct: 390 AGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESD-TVAGITERFELFITGREIA 448

Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
           NGFSELNDPE+Q+ RFK Q++ K+  + E + ++D DYI ALEYGMPP  GCGIG+DRL+
Sbjct: 449 NGFSELNDPEDQAARFKKQVEQKDAGDEE-AMFFDADYIRALEYGMPPTGGCGIGIDRLV 507

Query: 421 MLLTNSKNIRDVILFPHLRNEN 442
           MLLT+S  IRDV+LFPHLR E+
Sbjct: 508 MLLTDSPTIRDVLLFPHLRRED 529
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 100.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 100.0
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 100.0
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 100.0
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 100.0
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 100.0
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 100.0
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 100.0
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 100.0
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 100.0
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 100.0
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 100.0
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 100.0
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 100.0
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 100.0
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.93
12as_A330 Asparagine synthetase; ligase, nitrogen fixation; 99.9
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.81
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.72
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 99.62
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.55
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.49
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 99.17
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.85
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 98.82
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.8
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.69
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.68
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.68
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.66
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 98.33
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 98.29
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 98.27
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 98.26
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 98.2
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 98.18
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 98.18
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 98.16
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.15
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 98.14
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 98.12
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.11
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 98.11
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 98.1
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 98.07
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 98.05
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 98.04
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 98.03
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 98.03
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 97.98
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 97.96
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 97.95
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 97.95
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 97.94
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 97.94
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 97.93
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.89
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 97.87
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 97.81
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 97.67
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.63
3err_A536 Fusion protein of microtubule binding domain from 97.63
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 97.59
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 97.56
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 97.4
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 96.88
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 96.54
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 96.52
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 96.01
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 95.88
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 95.6
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 95.39
3dm3_A105 Replication factor A; probably plays AN essential 94.62
2k50_A115 Replication factor A related protein; uncharacteri 93.82
3kf6_A159 Protein STN1; OB fold, chromosomal protein, DNA-bi 93.2
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 92.8
3e0e_A97 Replication protein A; structural genomics, PSI-2, 92.61
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 91.27
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 90.12
1nnx_A109 Protein YGIW; structural genomics, hypothetical pr 89.42
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 85.13
3au7_A402 TIAS, putative uncharacterized protein; ATP hydrol 85.01
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 83.99
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 83.13
2kbn_A109 Conserved protein; nucleic acid binding protein, b 80.01
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
Probab=100.00  E-value=7.8e-114  Score=894.52  Aligned_cols=433  Identities=60%  Similarity=1.074  Sum_probs=403.4

Q ss_pred             CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863           1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL   80 (442)
Q Consensus         1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~   80 (442)
                      +++|.+||++|++|||++     +.||||++++.++++.|+.+++|+.||+|.|+|+|.++++|++||.+++++||++|.
T Consensus        96 ~~~R~~Gk~~Fi~LrD~s-----g~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~  170 (529)
T 4ex5_A           96 MLKRVMGKASFATVQDGS-----GQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKAL  170 (529)
T ss_dssp             EEEEEETTEEEEEEECSS-----CEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCS
T ss_pred             EeeecCCCeEEEEEEeCC-----eeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCC
Confidence            478999999999999999     999999998766677788888999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCC
Q psy8863          81 RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSL  160 (442)
Q Consensus        81 ~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~  160 (442)
                      +|||++.+++.+.++|+++||||+|+|+..+++|++||.++++||+||.++||+||+||+|+++|+||++++|.|+++++
T Consensus       171 ~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~  250 (529)
T 4ex5_A          171 RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNAL  250 (529)
T ss_dssp             SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTT
T ss_pred             CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccC
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce
Q psy8863         161 NMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK  240 (442)
Q Consensus       161 ~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~  240 (442)
                      +.++||+||||+|||+||++|++||||||||||||++++||+|||||||||++|+|++|+|+++|+||+++++.+.+++.
T Consensus       251 ~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~  330 (529)
T 4ex5_A          251 DMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT  330 (529)
T ss_dssp             TEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred             CcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCC
Q psy8863         241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW  320 (442)
Q Consensus       241 ~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~  320 (442)
                      +.|.+..++++.||+||||.||+++|..++++.++.+.+.+.+.+++.|+++.+.. +..|++|+++.++++.++|++++
T Consensus       331 ~~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~g~l~~e~~~~~vE~~l~  409 (529)
T 4ex5_A          331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPA-FLNAGIGALQLALFEETAEAQLW  409 (529)
T ss_dssp             EEETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGG-GTTCCHHHHHHHHHHHHTGGGCC
T ss_pred             eecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHHHHHHhccccC
Confidence            88988889999999999999999999954666666778889999999988765411 12478999999999999999999


Q ss_pred             CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHH
Q psy8863         321 NPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIH  400 (442)
Q Consensus       321 ~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~  400 (442)
                      +|+||+|||.+++|||+.++ +||++++|||||++|+||+|||+|+|||++|+++|++++..|+.++++ ++.+|+|||+
T Consensus       410 ~P~FI~dyP~~~splak~~~-~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~e-a~~~De~yl~  487 (529)
T 4ex5_A          410 EPTFIIDYPIEVSPLARESD-TVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEE-AMFFDADYIR  487 (529)
T ss_dssp             SCEEEEEEEGGGCTTBCBCS-SSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT-SCCCCHHHHH
T ss_pred             CCEEEECCchhhCCCcccCC-CCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcc-cccchHHHHH
Confidence            99999999999999998877 899999999999999999999999999999999999999998888877 7888999999


Q ss_pred             HHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863         401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE  441 (442)
Q Consensus       401 ~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~  441 (442)
                      |++||+|||||||||||||+|++||.+|||||++||+++++
T Consensus       488 aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~~  528 (529)
T 4ex5_A          488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRRE  528 (529)
T ss_dssp             HHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCCC
T ss_pred             HHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCCC
Confidence            99999999999999999999999999999999999999986
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 4e-99
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 6e-79
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 7e-78
d1eova2353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 6e-69
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 2e-68
d1b8aa2335 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As 3e-63
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 8e-56
d1e1oa1143 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) 1e-16
d1n9wa193 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) 2e-11
d1eova1134 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR 3e-08
d1b8aa1103 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS 2e-07
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

 Score =  298 bits (763), Expect = 4e-99
 Identities = 182/347 (52%), Positives = 245/347 (70%), Gaps = 7/347 (2%)

Query: 93  QEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKP 152
           QE++YR RY+DLI N+ +R+ F  R++I+++IR FM    FMEVETP++   PGGA A+P
Sbjct: 2   QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61

Query: 153 FITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYA 212
           FITHHN+L++ M+LRIAPELYLKRL++GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y 
Sbjct: 62  FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 121

Query: 213 AYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNE 272
           AY +Y  L++ TE + + +  + +GTTK+ Y   + DF K FEKLT+ EAIKKY P+ + 
Sbjct: 122 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDM 181

Query: 273 IDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEI 332
            DL N    K+  + I     +   L       +   +F+E  E  L  PT+IT YP E+
Sbjct: 182 ADLDNFDAAKALAESIGITVEKSWGL-----GRIVTEIFDEVAEAHLIQPTFITEYPAEV 236

Query: 333 SPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSS 392
           SPLAR+++  N  IT+RFE FI G EI NGFSELND E+Q+ RF+ Q++ K   + E + 
Sbjct: 237 SPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AM 294

Query: 393 YYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439
           +YD DY+ ALEYG+PP +G GIG+DR+IML TNS  IRDVILFP +R
Sbjct: 295 FYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 341
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 143 Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 100.0
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 100.0
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 100.0
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 100.0
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 100.0
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 99.71
d1e1oa1143 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 99.66
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 99.57
d1n9wa193 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.51
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.41
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 99.4
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 99.36
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 98.88
d12asa_327 Asparagine synthetase {Escherichia coli [TaxId: 56 98.76
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 98.71
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 98.49
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 98.2
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.93
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 97.84
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 97.8
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 97.77
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 97.7
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 97.29
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 96.98
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 96.79
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 96.47
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 92.07
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 89.87
d1nnxa_106 Hypothetical protein YgiW {Escherichia coli [TaxId 89.58
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 87.33
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 86.87
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 80.23
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 80.11
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=100.00  E-value=2.1e-88  Score=677.24  Aligned_cols=342  Identities=53%  Similarity=0.937  Sum_probs=317.7

Q ss_pred             chhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHH
Q psy8863          92 NQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPE  171 (442)
Q Consensus        92 ~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spq  171 (442)
                      |+++|+++||||+|||+..+++|++||++++++|+||.++||+||+||+|+++++|+++++|.++.++++.++||+||||
T Consensus         1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spq   80 (342)
T d1e1oa2           1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE   80 (342)
T ss_dssp             CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSH
T ss_pred             ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhhH
Confidence            46899999999998899999999999999999999999999999999999999888888999999899999999999999


Q ss_pred             HHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccC
Q psy8863         172 LYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFS  251 (442)
Q Consensus       172 l~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~  251 (442)
                      +|||++|++|++|||+||||||+|++++||+||||||||||+|+|++|+|+++|+|+++++..+.+.+...+.....++.
T Consensus        81 l~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1e1oa2          81 LYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFG  160 (342)
T ss_dssp             HHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETT
T ss_pred             HHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777766667788


Q ss_pred             CCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q psy8863         252 KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTE  331 (442)
Q Consensus       252 ~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~  331 (442)
                      .||+++++.+|++.+.......++.+.+....+++..|+....     .|++++++.++++.++++++..|+||+|||..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~fi~~~P~~  235 (342)
T d1e1oa2         161 KPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEK-----SWGLGRIVTEIFDEVAEAHLIQPTFITEYPAE  235 (342)
T ss_dssp             SCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCT-----TCCHHHHHHHHHHHHTGGGCCSCEEEECCBGG
T ss_pred             CchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCccc-----ccchhHHHHHHHHHhhHhhccCCCcCCCCccc
Confidence            9999999999999998544445566677777788888887766     78999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccc
Q psy8863         332 ISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASG  411 (442)
Q Consensus       332 ~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G  411 (442)
                      ++|||+..+ +|+.++++|||+++|+||+|||+|+||+++|+++|++++..++.++++ ..++|+|||+|++||+|||||
T Consensus       236 ~~~f~~~~~-~~~~~~~~fdl~~~g~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~-~~~~d~~yl~a~~~G~pPh~G  313 (342)
T d1e1oa2         236 VSPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYVTALEYGLPPTAG  313 (342)
T ss_dssp             GCTTBCBCS-SCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT-CCCCCHHHHHHHHHHCCSEEE
T ss_pred             cChhhcccc-ccchhhhhhhcccCCEeecCCccccCCHHHHHHHHHHHHHHHhcCcch-hhhhhHHHHHHhhCCCCCccc
Confidence            999999988 788999999999999999999999999999999999999888877776 666789999999999999999


Q ss_pred             eehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863         412 CGIGVDRLIMLLTNSKNIRDVILFPHLRN  440 (442)
Q Consensus       412 ~giGieRL~m~l~g~~~Irdv~~FPr~~~  440 (442)
                      ||||+|||+|+++|++|||||++|||+++
T Consensus       314 ~glG~dRlvm~l~g~~nIrdvi~FPr~r~  342 (342)
T d1e1oa2         314 LGIGIDRMIMLFTNSHTIRDVILFPAMRP  342 (342)
T ss_dssp             EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred             hhHHHHHHHHHHhCCCcHHHhccCCCCCC
Confidence            99999999999999999999999999985
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure