Psyllid ID: psy8873
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NB32 | 533 | T-complex protein 1 subun | N/A | N/A | 0.536 | 0.846 | 0.741 | 0.0 | |
| Q2T9X2 | 542 | T-complex protein 1 subun | yes | N/A | 0.532 | 0.826 | 0.677 | 0.0 | |
| Q7TPB1 | 539 | T-complex protein 1 subun | yes | N/A | 0.532 | 0.831 | 0.674 | 0.0 | |
| P80315 | 539 | T-complex protein 1 subun | yes | N/A | 0.532 | 0.831 | 0.670 | 0.0 | |
| P50991 | 539 | T-complex protein 1 subun | yes | N/A | 0.532 | 0.831 | 0.666 | 0.0 | |
| Q5R637 | 539 | T-complex protein 1 subun | yes | N/A | 0.532 | 0.831 | 0.664 | 0.0 | |
| P53451 | 536 | T-complex protein 1 subun | N/A | N/A | 0.531 | 0.833 | 0.655 | 0.0 | |
| Q54CL2 | 533 | T-complex protein 1 subun | yes | N/A | 0.529 | 0.834 | 0.608 | 1e-166 | |
| P47208 | 540 | T-complex protein 1 subun | yes | N/A | 0.531 | 0.827 | 0.586 | 1e-164 | |
| P50999 | 527 | T-complex protein 1 subun | yes | N/A | 0.530 | 0.846 | 0.572 | 1e-160 |
| >sp|Q9NB32|TCPD_AEDTR T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/484 (74%), Positives = 412/484 (85%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV+VAG+LL+A EKLL GIHPT ISDAFQK +AK V+ILT
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILT 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMSTPI L DRE+L+KSA+TSLNSKVVSQ +S LAPIAV+AVLKV ++ VDLK++K
Sbjct: 143 EMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESGVDLKNVK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+IR LGGT++DTELVDGLVFTQ+S VNGPKRVEKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 IIRSLGGTIDDTELVDGLVFTQRSCGVNGPKRVEKAKIGLIQFCISAPKTDMDHSVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDA+SDLA+HFLDKIKV+VVKDI
Sbjct: 263 YAAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAMHFLDKIKVMVVKDI 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
E EDIEFVCKTLN RPIASLDHFLPEHL +ADLVEE+ +G+S+FVK++GIQN G+T+++V
Sbjct: 323 EHEDIEFVCKTLNCRPIASLDHFLPEHLVNADLVEEVSSGSSKFVKVTGIQNMGQTVSIV 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCVVRCLVK+RA IAGGGAPEIE++++L +A T+ G+DAY
Sbjct: 383 VRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFANALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE GINVRKGAIT+IL ENVVQPLLVSTS+ITL++ETVRSILKIDDI+
Sbjct: 470 VTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529
Query: 838 NTLN 841
NT+
Sbjct: 530 NTMQ 533
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Aedes triseriatus (taxid: 7162) |
| >sp|Q2T9X2|TCPD_BOVIN T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/483 (67%), Positives = 400/483 (82%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 93 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 152
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 153 DMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 212
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 213 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 271
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 272 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 331
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 332 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 391
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 392 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 451
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 452 YC---------------------------------IRAFADAMEVIPSTLAENAGLNPIS 478
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 479 TVTELRNRHAQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDV 538
Query: 837 VNT 839
VNT
Sbjct: 539 VNT 541
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Bos taurus (taxid: 9913) |
| >sp|Q7TPB1|TCPD_RAT T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/483 (67%), Positives = 401/483 (83%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F P+ L SA+L EE+ G+ + KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 449 YC---------------------------------VRAFADAMEVIPSTLAENAGLNPIS 475
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 476 TVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDV 535
Query: 837 VNT 839
VNT
Sbjct: 536 VNT 538
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Rattus norvegicus (taxid: 10116) |
| >sp|P80315|TCPD_MOUSE T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/483 (67%), Positives = 400/483 (82%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKD+
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDV 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 449 YC---------------------------------VRAFADAMEVIPSTLAENAGLNPIS 475
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 476 TVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDV 535
Query: 837 VNT 839
VNT
Sbjct: 536 VNT 538
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Mus musculus (taxid: 10090) |
| >sp|P50991|TCPD_HUMAN T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/483 (66%), Positives = 400/483 (82%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK +N +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVSN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++V+KDI
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 449 YC---------------------------------VRAFADAMEVIPSTLAENAGLNPIS 475
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE T GINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 476 TVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 535
Query: 837 VNT 839
VNT
Sbjct: 536 VNT 538
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Homo sapiens (taxid: 9606) |
| >sp|Q5R637|TCPD_PONAB T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/483 (66%), Positives = 399/483 (82%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKV SQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK +N +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVSN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++V+KDI
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 449 YC---------------------------------VRAFADAMEVIPSTLAENAGLNPIS 475
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE T GINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 476 TVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 535
Query: 837 VNT 839
VNT
Sbjct: 536 VNT 538
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Pongo abelii (taxid: 9601) |
| >sp|P53451|TCPD_TAKRU T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/482 (65%), Positives = 394/482 (81%), Gaps = 35/482 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++AG+LL++ +LL +GIHPT IS++FQKA K VE+LT
Sbjct: 87 MLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLT 146
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS P+ L DRE L+ SA TSL SKVVSQ +SLLAP++VDAV++V++P T+VDL DIK
Sbjct: 147 AMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRVIDPATATSVDLHDIK 206
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+I+KLGGT++D ELV+GLV TQ+ AN + RVEKAKIGLIQFC+SPPKTDMD+++VVSD
Sbjct: 207 IIKKLGGTIDDCELVEGLVLTQRVAN-SSVSRVEKAKIGLIQFCLSPPKTDMDNQIVVSD 265
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKKAGCNVL +QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 266 YTQMDRVLREERAYILNMVKQIKKAGCNVLFIQKSILRDALSDLALHFLNKMKIMVVKDI 325
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+PIA +DHF PE L +A+L EE+ G+ + VKI+G +PG+T+++
Sbjct: 326 EREDIEFICKTIGTKPIAHIDHFTPEMLGTAELAEEVSLDGSGKLVKITGCASPGKTVSI 385
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+++L +Y+ T+ G++A
Sbjct: 386 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEA 445
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
Y C RA++ ALEVIP TLAENAGLNPIS
Sbjct: 446 Y---------------------------------CVRAYSDALEVIPSTLAENAGLNPIS 472
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQG+ GINVRKG I+NI+EE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 473 TVTELRNRHAQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDV 532
Query: 837 VN 838
VN
Sbjct: 533 VN 534
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Takifugu rubripes (taxid: 31033) |
| >sp|Q54CL2|TCPD_DICDI T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/480 (60%), Positives = 372/480 (77%), Gaps = 35/480 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L EL+KAQDIEAGDGTTSV ++AGSLL A +L+ KGIHP+ IS+AF A K +E+L
Sbjct: 84 MLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLV 143
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS P++L DR +L+KSA TSLNSKVVSQ +L A IAVDAVL V+NP NV+LKDIK
Sbjct: 144 SMSVPVSLTDRVSLVKSATTSLNSKVVSQYTNL-ASIAVDAVLSVINPATAVNVNLKDIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANV-NGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+I+KLGGT+EDTELV GLVF Q +++ GP R++ AKIGLIQFC+S PKT MD+ +VVS
Sbjct: 203 LIKKLGGTIEDTELVQGLVFDQTASHTAGGPTRIQNAKIGLIQFCLSAPKTYMDNNIVVS 262
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DYS MD+V+KEE IL + ++I+K+GCNVLLVQKSILRDA++DL++H+L K+K+LV+KD
Sbjct: 263 DYSKMDKVIKEEPKLILEMCRKIQKSGCNVLLVQKSILRDAVNDLSLHYLAKLKILVIKD 322
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IER+DIEF+C T+ +P+A++D F + L ADLVEE+ + + VK++GI NPG+T+TV
Sbjct: 323 IERDDIEFICNTIGCQPVANIDSFTADKLGKADLVEEVGTSDGKIVKVTGIPNPGKTVTV 382
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+ RGSNKLVLDEA RSLHDALCV+R LVK++ LIAGGGAPEIE+S ++T ++ T++GI +
Sbjct: 383 LCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIAGGGAPEIEVSQQVTAFSKTLTGITS 442
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
Y C RA+A+ALE+IP TLAENAGL+PIS
Sbjct: 443 Y---------------------------------CVRAYAEALEIIPYTLAENAGLHPIS 469
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELRN+HAQGE +GINVRKGAITNIL+ENVVQPLLVSTSA+TL+TETV +LKIDDI
Sbjct: 470 IVTELRNKHAQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDI 529
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Dictyostelium discoideum (taxid: 44689) |
| >sp|P47208|TCPD_CAEEL T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/481 (58%), Positives = 371/481 (77%), Gaps = 34/481 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTT+VV++AG+LL+AA+ LL KGIHPTTIS++FQ AAA+ +IL
Sbjct: 89 MLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILD 148
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMS+P+ L++ L K A TSLNSKVVSQ + LLAP+AV+AV K++N + D+NV+LK IK
Sbjct: 149 EMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLLAPMAVNAVKKIINSENDSNVNLKMIK 208
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+I+K+G TVE++EL++G + QK+ P R+EKAKIGLIQF ISPPKTDM+++V+++D
Sbjct: 209 IIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDMENQVIITD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDR LKEER Y+L I KQIK AGCNVLL+QKSILRDA+++LA+HFL K+K++ +KDI
Sbjct: 269 YAQMDRALKEERQYLLEICKQIKAAGCNVLLIQKSILRDAVNELALHFLAKMKIMCIKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP-AGNSRFVKISGIQNPGRTLTV 656
EREDIEF + L RP+AS+DHF + L ADLVEEIP G+ + +K++G+QNPG +++
Sbjct: 329 EREDIEFYSRILGCRPVASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RGSNKLVL+EA RS+HDALCV+RCLVK++AL+ GGGAPE+E+++KL A T G
Sbjct: 389 LLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQ 448
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC +RAFA ALE+IP TLAENAGL+PI
Sbjct: 449 YC---------------------------------WRAFADALELIPYTLAENAGLSPIH 475
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRN HA G ++ G+NVRKG +T+++EE+VVQPLLV+ SAI ++E VRSILKIDDI
Sbjct: 476 TVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDI 535
Query: 837 V 837
V
Sbjct: 536 V 536
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Caenorhabditis elegans (taxid: 6239) |
| >sp|P50999|TCPD_SCHPO T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/480 (57%), Positives = 366/480 (76%), Gaps = 34/480 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+LS AQD+EAGDGTTSVVI+AGS+L AEKLL KGIHPT I+++FQ+AA V+ +
Sbjct: 77 MLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E + I L+DRE+L+++A TSLNSK+VSQ ++LLAPIAVDAVLKV++P+ TNVDLKDI+
Sbjct: 137 ENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIR 196
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSA-NVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++KLGG ++DTEL+ GL TQ + + GP R+EKA I LIQF +SPPK DM+++VVV+
Sbjct: 197 IVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVN 256
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY MD++LKEER Y+LN+ K+IKKAG NV+L+QKSILRDA++DLA+HFL K+K++V+KD
Sbjct: 257 DYRQMDKILKEERQYLLNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKLKIMVIKD 316
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IER+++EF+CK+ +PIA ++ F + L ADLVEE + + VK SG++N G+T+++
Sbjct: 317 IERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSI 376
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+ RG+N L L+EA RSLHDALCV+RCLVKQRALIAGGG+PEIE + +L ++A + G +A
Sbjct: 377 LCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREA 436
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
C RAF++ALE+IP+TLAENAGLN I
Sbjct: 437 IC---------------------------------IRAFSEALEIIPVTLAENAGLNAIQ 463
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELR+RHA GE T GINVRKG +TNILEENV+QPLLV+ SAI L+ ET + I+KIDDI
Sbjct: 464 VVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523
|
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| 193603376 | 534 | PREDICTED: t-complex protein 1 subunit d | 0.533 | 0.840 | 0.751 | 0.0 | |
| 332023193 | 539 | T-complex protein 1 subunit delta [Acrom | 0.533 | 0.833 | 0.757 | 0.0 | |
| 157116665 | 533 | chaperonin [Aedes aegypti] gi|108876347| | 0.536 | 0.846 | 0.747 | 0.0 | |
| 322798585 | 539 | hypothetical protein SINV_01813 [Solenop | 0.535 | 0.834 | 0.755 | 0.0 | |
| 380028259 | 504 | PREDICTED: T-complex protein 1 subunit d | 0.537 | 0.896 | 0.746 | 0.0 | |
| 31340450 | 533 | RecName: Full=T-complex protein 1 subuni | 0.536 | 0.846 | 0.741 | 0.0 | |
| 170032379 | 533 | chaperonin [Culex quinquefasciatus] gi|1 | 0.536 | 0.846 | 0.745 | 0.0 | |
| 66558942 | 534 | PREDICTED: t-complex protein 1 subunit d | 0.533 | 0.840 | 0.748 | 0.0 | |
| 195435101 | 533 | GK14617 [Drosophila willistoni] gi|19416 | 0.536 | 0.846 | 0.747 | 0.0 | |
| 194761334 | 533 | GF15661 [Drosophila ananassae] gi|190616 | 0.536 | 0.846 | 0.745 | 0.0 |
| >gi|193603376|ref|XP_001948080.1| PREDICTED: t-complex protein 1 subunit delta-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/482 (75%), Positives = 420/482 (87%), Gaps = 33/482 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS AQD+EAGDGTTSVV++AG+LLEA+EKLL KGIHPT ISD FQKAAAK +EI+
Sbjct: 83 MLVELSNAQDVEAGDGTTSVVVIAGALLEASEKLLQKGIHPTGISDGFQKAAAKSIEIIK 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
M+TPI L DRE+L+KSA+T+LNSKVVSQQ+SLLAP+AVDAVLKVV+P +DTNVDLKDIK
Sbjct: 143 NMATPILLTDRESLVKSASTALNSKVVSQQSSLLAPLAVDAVLKVVDPAKDTNVDLKDIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+KLGGTVEDT+L+DGLVFTQKS+NVNGP+++EKAKIGLIQFCISPPKTDMD+ VVVSD
Sbjct: 203 VIKKLGGTVEDTKLIDGLVFTQKSSNVNGPRKIEKAKIGLIQFCISPPKTDMDYNVVVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVL+EERAYILNIVKQIKKAGCNVLL+QKSILRDA+S+LAIHFLDKIK +V+ +I
Sbjct: 263 YTAMDRVLREERAYILNIVKQIKKAGCNVLLIQKSILRDALSELAIHFLDKIKCMVINNI 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDI++VCKTLN RPIASLDHF+ E+L SADLVE++ GNS FV+I+GI NPGRT++++
Sbjct: 323 EREDIDYVCKTLNCRPIASLDHFVAENLVSADLVEDVMTGNSHFVQITGINNPGRTVSII 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RS+HDALCV+RCLVK RAL+AGGGAPEIE+SLKL + A V+G+DAY
Sbjct: 383 VRGSNKLVLEEAERSIHDALCVIRCLVKHRALLAGGGAPEIEISLKLAELARLVTGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C +RAFAQALEVIPLTLAENAGLNPI+T
Sbjct: 443 C---------------------------------YRAFAQALEVIPLTLAENAGLNPITT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRH+QGE T GINVRKGAITNILEENVVQPLLVS SAITL++ETVRSILKIDDIV
Sbjct: 470 VTELRNRHSQGEVTAGINVRKGAITNILEENVVQPLLVSISAITLASETVRSILKIDDIV 529
Query: 838 NT 839
NT
Sbjct: 530 NT 531
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023193|gb|EGI63449.1| T-complex protein 1 subunit delta [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/482 (75%), Positives = 414/482 (85%), Gaps = 33/482 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++ GSLLEAAE+LL KGIHPT+ISDAFQKAA+K V ILT
Sbjct: 89 MLVELSKAQDIEAGDGTTSVVVIGGSLLEAAERLLQKGIHPTSISDAFQKAASKAVSILT 148
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L D+E+L+K AATSLNSKVV QQ+SLLAP+AVDAVLKV ++ +VDL DIK
Sbjct: 149 QMSIPVDLTDKESLVKVAATSLNSKVVHQQSSLLAPLAVDAVLKVTEEGKEMSVDLNDIK 208
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+KLGGTVEDTELVDGL+FTQKS NVNGPKR+EKAKIGLIQFCISPPKTDMDH V+VSD
Sbjct: 209 VIKKLGGTVEDTELVDGLIFTQKSCNVNGPKRIEKAKIGLIQFCISPPKTDMDHNVIVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKK GCNVLLVQKS+LRDA+SDLAIHFLDKIKV+V+KD+
Sbjct: 269 YAAMDRVLKEERAYILNIVKQIKKTGCNVLLVQKSVLRDAVSDLAIHFLDKIKVMVIKDV 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDI FVCKTL RPIASLDHF+PE+L +A+L EE+ GNS+FVKI+GIQN G+T+TV+
Sbjct: 329 EREDIPFVCKTLGCRPIASLDHFVPENLVNAELCEEVQTGNSKFVKITGIQNHGKTVTVL 388
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCV+RCLVKQRALIAGGGAPEIEL+LKL +YA T+ GI+AY
Sbjct: 389 VRGSNKLVLEEAGRSLHDALCVIRCLVKQRALIAGGGAPEIELALKLGEYAVTLGGINAY 448
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C +AFA ALEVIP TLAENAGLNPI+T
Sbjct: 449 ---------------------------------CIKAFANALEVIPSTLAENAGLNPIAT 475
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHA+GE T GINVRKGAITNILEENV+QPLLVSTS+ITL++ETVRSILKIDDIV
Sbjct: 476 VTELRNRHAKGEVTAGINVRKGAITNILEENVIQPLLVSTSSITLASETVRSILKIDDIV 535
Query: 838 NT 839
NT
Sbjct: 536 NT 537
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157116665|ref|XP_001652824.1| chaperonin [Aedes aegypti] gi|108876347|gb|EAT40572.1| AAEL007702-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/484 (74%), Positives = 413/484 (85%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV+VAG+LLEA EKLL GIHPT ISDAFQK +AK V+ILT
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVVAGALLEAVEKLLQMGIHPTAISDAFQKCSAKAVDILT 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMS PI L+DRE+LIKSA+TSLNSKVVSQ +S LAPIAV+AVLKV P ++ VDLK++K
Sbjct: 143 EMSRPIELSDRESLIKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEPGHESGVDLKNVK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+IR LGGT++DTEL+DGLVFTQ+S VNGPKRVEKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 IIRSLGGTIDDTELIDGLVFTQRSCGVNGPKRVEKAKIGLIQFCISAPKTDMDHSVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDA+SDLA+HFLDKIKV+VVKDI
Sbjct: 263 YAAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAVSDLALHFLDKIKVMVVKDI 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDIEFVCKTLN RPIASLDHFLPEHL +ADLVEE+ +G S+FVK++GIQN G+T+++V
Sbjct: 323 EREDIEFVCKTLNCRPIASLDHFLPEHLVNADLVEEVSSGTSKFVKVTGIQNMGKTVSIV 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCVVRCLVK+RA IAGGGAPEIE++L+L +A T+ G+DAY
Sbjct: 383 VRGSNKLVLEEADRSLHDALCVVRCLVKKRAQIAGGGAPEIEMALQLAAHAQTLEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFANALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE GINVRKGAIT+IL ENVVQPLLVSTS+ITL++ETVRSILKIDDI+
Sbjct: 470 VTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529
Query: 838 NTLN 841
NT+
Sbjct: 530 NTMQ 533
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322798585|gb|EFZ20189.1| hypothetical protein SINV_01813 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/483 (75%), Positives = 413/483 (85%), Gaps = 33/483 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++AGSLLE+AE+LL KGIHPT+ISDAFQKAA+K V IL
Sbjct: 89 MLVELSKAQDIEAGDGTTSVVVIAGSLLESAERLLQKGIHPTSISDAFQKAASKAVSILL 148
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS + L D+E+L+K AATSLNSKVV QQ+SLLAP+AVDAVLKV ++ +VDL DIK
Sbjct: 149 NMSISVDLTDKESLVKVAATSLNSKVVHQQSSLLAPLAVDAVLKVTEEGKEVSVDLHDIK 208
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+KLGGTVEDTELVDGL+FTQKS NVNGPKR+EK KIGLIQFCISPPKTDMDH VVVSD
Sbjct: 209 VIKKLGGTVEDTELVDGLIFTQKSCNVNGPKRIEKVKIGLIQFCISPPKTDMDHNVVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKK+GCNVLLVQKS+LRDAISDLAIHFLDKIKV+V+KD+
Sbjct: 269 YAAMDRVLKEERAYILNIVKQIKKSGCNVLLVQKSVLRDAISDLAIHFLDKIKVMVIKDV 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDI FVCKTL RPIASLDHF+PE+L +A+L EE+ GNS+FVKI+GIQN G+T+TV+
Sbjct: 329 EREDIPFVCKTLGCRPIASLDHFVPENLVNAELCEEVQTGNSKFVKITGIQNHGKTVTVL 388
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCV+RCLVKQRALIAGGGAPEIEL+LKL +YA T+ GIDAY
Sbjct: 389 VRGSNKLVLEEAERSLHDALCVIRCLVKQRALIAGGGAPEIELALKLGEYAVTLGGIDAY 448
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C +AFA ALEVIP TLAENAGLNPI+T
Sbjct: 449 ---------------------------------CIKAFANALEVIPSTLAENAGLNPIAT 475
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHA+GE T GINVRKGAITNILEENV+QPLLVSTS+ITL++ETVRSILKIDDIV
Sbjct: 476 VTELRNRHAKGEVTAGINVRKGAITNILEENVIQPLLVSTSSITLASETVRSILKIDDIV 535
Query: 838 NTL 840
NT+
Sbjct: 536 NTI 538
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380028259|ref|XP_003697824.1| PREDICTED: T-complex protein 1 subunit delta-like isoform 2 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/485 (74%), Positives = 413/485 (85%), Gaps = 33/485 (6%)
Query: 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414
+D +LVELSKAQD+EAGDGTTSVV++AGSLLEAAE+LL KGIHPT ISD+FQKAAAK VE
Sbjct: 51 MDKMLVELSKAQDVEAGDGTTSVVVIAGSLLEAAERLLQKGIHPTLISDSFQKAAAKAVE 110
Query: 415 ILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
ILT MS P+ L D+++LI++AATSLNSKVV QQ+SLLAP+AVDAVLKV +++ VDL
Sbjct: 111 ILTNMSIPVDLRDKQSLIRAAATSLNSKVVFQQSSLLAPLAVDAVLKVTEEGKESTVDLN 170
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
+IKVI+KLGGTVEDTELV+GL+FTQKS NVNGPKR+EKAKIGLIQFCISPPKTDMDH V+
Sbjct: 171 NIKVIKKLGGTVEDTELVEGLIFTQKSCNVNGPKRIEKAKIGLIQFCISPPKTDMDHNVI 230
Query: 535 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594
VSDY+AMDRVLKEER YILNIVKQIKK GCNVLLVQKSILRDA+SDLAIHFLDKIKV+V+
Sbjct: 231 VSDYAAMDRVLKEERTYILNIVKQIKKTGCNVLLVQKSILRDAVSDLAIHFLDKIKVMVI 290
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 654
KDIEREDI FVCKTL RPIASLDHF+ E+L +A+L EE+ G+S+FVKI+ IQNPG T+
Sbjct: 291 KDIEREDISFVCKTLGCRPIASLDHFVAENLVNAELCEEVQTGSSKFVKITKIQNPGPTV 350
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
TV+VRGSNKLVL+EA RSLHDALCVVRCLVKQ+ALIAGGGAPEIEL+LKL YA T++G+
Sbjct: 351 TVLVRGSNKLVLEEAERSLHDALCVVRCLVKQKALIAGGGAPEIELALKLGAYAQTLTGV 410
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
DAY C AFA A E+IP TLAENAGLNP
Sbjct: 411 DAY---------------------------------CINAFANAFEIIPSTLAENAGLNP 437
Query: 775 ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834
I+TVTELRNRHA+GE TTGINVRKG+ITNILEENV+QPLLVSTSAITL++ETVRSILKID
Sbjct: 438 IATVTELRNRHAKGEHTTGINVRKGSITNILEENVIQPLLVSTSAITLASETVRSILKID 497
Query: 835 DIVNT 839
DIVNT
Sbjct: 498 DIVNT 502
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|31340450|sp|Q9NB32.1|TCPD_AEDTR RecName: Full=T-complex protein 1 subunit delta; Short=TCP-1-delta; AltName: Full=CCT-delta gi|9438112|gb|AAF87577.1|AF271209_1 putative chaperonin containing t-complex polypeptide 1 CCT delta subunit [Ochlerotatus triseriatus] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/484 (74%), Positives = 412/484 (85%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV+VAG+LL+A EKLL GIHPT ISDAFQK +AK V+ILT
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILT 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMSTPI L DRE+L+KSA+TSLNSKVVSQ +S LAPIAV+AVLKV ++ VDLK++K
Sbjct: 143 EMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESGVDLKNVK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+IR LGGT++DTELVDGLVFTQ+S VNGPKRVEKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 IIRSLGGTIDDTELVDGLVFTQRSCGVNGPKRVEKAKIGLIQFCISAPKTDMDHSVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDA+SDLA+HFLDKIKV+VVKDI
Sbjct: 263 YAAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAMHFLDKIKVMVVKDI 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
E EDIEFVCKTLN RPIASLDHFLPEHL +ADLVEE+ +G+S+FVK++GIQN G+T+++V
Sbjct: 323 EHEDIEFVCKTLNCRPIASLDHFLPEHLVNADLVEEVSSGSSKFVKVTGIQNMGQTVSIV 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCVVRCLVK+RA IAGGGAPEIE++++L +A T+ G+DAY
Sbjct: 383 VRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFANALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE GINVRKGAIT+IL ENVVQPLLVSTS+ITL++ETVRSILKIDDI+
Sbjct: 470 VTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529
Query: 838 NTLN 841
NT+
Sbjct: 530 NTMQ 533
|
Source: Ochlerotatus triseriatus Species: Ochlerotatus triseriatus Genus: Ochlerotatus Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170032379|ref|XP_001844059.1| chaperonin [Culex quinquefasciatus] gi|167872345|gb|EDS35728.1| chaperonin [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/484 (74%), Positives = 407/484 (84%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV+VAG+LLEAAEKLL GIHPT ISDAFQ+ +AK VEIL
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVVAGALLEAAEKLLQMGIHPTAISDAFQRCSAKAVEILN 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMS PI L DRE LIKSA+TSLNSKVVSQ +S LAPIAVDAVLKV + DLK+IK
Sbjct: 143 EMSQPIELTDRETLIKSASTSLNSKVVSQHSSQLAPIAVDAVLKVTEAGLEAGCDLKNIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
IR LGGT+EDTEL+DGLVFTQ+S+ VNGPKR+EKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 TIRSLGGTIEDTELIDGLVFTQRSSGVNGPKRLEKAKIGLIQFCISAPKTDMDHSVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEERAYILNIVKQIKK+GCNVLLVQKSILRDA+SDLA+HFLDKIKV+VVKDI
Sbjct: 263 YAAMDRVLKEERAYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAMHFLDKIKVMVVKDI 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDIEFVCKTLN RPIASLDHFLPEHL SADLVEE+ +G+++FVK++GIQN G+T+++V
Sbjct: 323 EREDIEFVCKTLNCRPIASLDHFLPEHLVSADLVEEVASGSTKFVKVTGIQNQGKTVSIV 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCVVRCLVK+RA IAGGGAPEIE++L L +A T+ G+DAY
Sbjct: 383 VRGSNKLVLEEADRSLHDALCVVRCLVKKRAQIAGGGAPEIEMALALAAHAQTLEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFANALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE GINVRKGAIT+IL ENVVQPLLVS S+ITL++ETVRSILKIDDIV
Sbjct: 470 VTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSISSITLASETVRSILKIDDIV 529
Query: 838 NTLN 841
NT+
Sbjct: 530 NTMQ 533
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66558942|ref|XP_623672.1| PREDICTED: t-complex protein 1 subunit delta-like isoform 1 [Apis mellifera] gi|380028257|ref|XP_003697823.1| PREDICTED: T-complex protein 1 subunit delta-like isoform 1 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/482 (74%), Positives = 411/482 (85%), Gaps = 33/482 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQD+EAGDGTTSVV++AGSLLEAAE+LL KGIHPT ISD+FQKAAAK VEILT
Sbjct: 84 MLVELSKAQDVEAGDGTTSVVVIAGSLLEAAERLLQKGIHPTLISDSFQKAAAKAVEILT 143
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS P+ L D+++LI++AATSLNSKVV QQ+SLLAP+AVDAVLKV +++ VDL +IK
Sbjct: 144 NMSIPVDLRDKQSLIRAAATSLNSKVVFQQSSLLAPLAVDAVLKVTEEGKESTVDLNNIK 203
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+KLGGTVEDTELV+GL+FTQKS NVNGPKR+EKAKIGLIQFCISPPKTDMDH V+VSD
Sbjct: 204 VIKKLGGTVEDTELVEGLIFTQKSCNVNGPKRIEKAKIGLIQFCISPPKTDMDHNVIVSD 263
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEER YILNIVKQIKK GCNVLLVQKSILRDA+SDLAIHFLDKIKV+V+KDI
Sbjct: 264 YAAMDRVLKEERTYILNIVKQIKKTGCNVLLVQKSILRDAVSDLAIHFLDKIKVMVIKDI 323
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDI FVCKTL RPIASLDHF+ E+L +A+L EE+ G+S+FVKI+ IQNPG T+TV+
Sbjct: 324 EREDISFVCKTLGCRPIASLDHFVAENLVNAELCEEVQTGSSKFVKITKIQNPGPTVTVL 383
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
VRGSNKLVL+EA RSLHDALCVVRCLVKQ+ALIAGGGAPEIEL+LKL YA T++G+DAY
Sbjct: 384 VRGSNKLVLEEAERSLHDALCVVRCLVKQKALIAGGGAPEIELALKLGAYAQTLTGVDAY 443
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C AFA A E+IP TLAENAGLNPI+T
Sbjct: 444 ---------------------------------CINAFANAFEIIPSTLAENAGLNPIAT 470
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHA+GE TTGINVRKG+ITNILEENV+QPLLVSTSAITL++ETVRSILKIDDIV
Sbjct: 471 VTELRNRHAKGEHTTGINVRKGSITNILEENVIQPLLVSTSAITLASETVRSILKIDDIV 530
Query: 838 NT 839
NT
Sbjct: 531 NT 532
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195435101|ref|XP_002065540.1| GK14617 [Drosophila willistoni] gi|194161625|gb|EDW76526.1| GK14617 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/484 (74%), Positives = 407/484 (84%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV++AG+LLEA EKLL KG+HPT ISD+FQ+ + K VEILT
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILT 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MSTPI L DRE LIKSA+TSLNSKVVSQQ+SLLAPIAVDAVLKV P ++T VDLK+IK
Sbjct: 143 QMSTPIELNDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTEPGKETAVDLKNIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI LGGT+EDTELVDGLVFT +SA N PKR+EKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 VISSLGGTIEDTELVDGLVFTSRSAGTNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEER YILNIVKQIKKAGCNVLLVQKSILRDA+SDLA HFLDKIK LVVKD+
Sbjct: 263 YAAMDRVLKEERTYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAQHFLDKIKCLVVKDV 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDIEFVCKTL+ RPIASLDHF E+LSSADLVEE+ +G ++FVKI+GIQN GRT++++
Sbjct: 323 EREDIEFVCKTLHCRPIASLDHFTAENLSSADLVEEVSSGTNKFVKITGIQNQGRTVSII 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
RGSNKLVL+EAARSLHDALCVVRCLVK+RA I GGGAPEIE++L+L A TV G+DAY
Sbjct: 383 CRGSNKLVLEEAARSLHDALCVVRCLVKKRAQIVGGGAPEIEMALQLAAVAQTVEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFADALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE T GINVRKGAIT+IL ENVVQPLLVSTSAITL+TET+RSILKIDDIV
Sbjct: 470 VTELRNRHAQGEKTAGINVRKGAITDILAENVVQPLLVSTSAITLATETIRSILKIDDIV 529
Query: 838 NTLN 841
NT +
Sbjct: 530 NTFS 533
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194761334|ref|XP_001962884.1| GF15661 [Drosophila ananassae] gi|190616581|gb|EDV32105.1| GF15661 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/484 (74%), Positives = 409/484 (84%), Gaps = 33/484 (6%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+EAGDGTTSVV++AG+LLEA EKLL KG+HPT ISD+FQ+ + K VEILT
Sbjct: 83 MLVELSRAQDVEAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILT 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MSTPI L DRE LIKSA+TSLNSKVVSQQ+SLLAPIAVDAVLKV P ++T+VDLK+IK
Sbjct: 143 QMSTPIELNDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTEPGKETSVDLKNIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI LGGTVEDTELVDGLVFT +SA N PKR+EKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 VISSLGGTVEDTELVDGLVFTTRSAGTNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEER+YILNIVKQIKKAGCNVLLVQKSILRDA+SDLA HFLDKIK LVVKD+
Sbjct: 263 YAAMDRVLKEERSYILNIVKQIKKAGCNVLLVQKSILRDAVSDLAQHFLDKIKCLVVKDV 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDIEFVCKTL+ RPIASLDHF E+LSSA+LVEE+ +G ++FVKI+GIQN GRT++++
Sbjct: 323 EREDIEFVCKTLHCRPIASLDHFTAENLSSAELVEEVASGTNKFVKITGIQNMGRTISII 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
RGSNKLVL+EAARSLHDALCVVRCLVK+RA I GGGAPEIE++L+L A+TV G+DAY
Sbjct: 383 CRGSNKLVLEEAARSLHDALCVVRCLVKKRAQIVGGGAPEIEMALQLAAVANTVEGVDAY 442
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
C FRAFA ALEVIP TLAENAGLNPI+T
Sbjct: 443 C---------------------------------FRAFADALEVIPSTLAENAGLNPIAT 469
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VTELRNRHAQGE T GINVRKGAIT+IL ENVVQPLLVS SAITL+TET+RSILKIDDIV
Sbjct: 470 VTELRNRHAQGEKTAGINVRKGAITDILAENVVQPLLVSISAITLATETIRSILKIDDIV 529
Query: 838 NTLN 841
NT +
Sbjct: 530 NTFS 533
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| FB|FBgn0032444 | 533 | CG5525 [Drosophila melanogaste | 0.432 | 0.682 | 0.777 | 4.7e-196 | |
| UNIPROTKB|F1N0E5 | 542 | CCT4 "T-complex protein 1 subu | 0.431 | 0.669 | 0.693 | 5.2e-186 | |
| UNIPROTKB|Q2T9X2 | 542 | CCT4 "T-complex protein 1 subu | 0.431 | 0.669 | 0.693 | 1.1e-185 | |
| RGD|727937 | 539 | Cct4 "chaperonin containing Tc | 0.431 | 0.673 | 0.690 | 1.4e-185 | |
| UNIPROTKB|F1Q331 | 539 | CCT4 "T-complex protein 1 subu | 0.431 | 0.673 | 0.687 | 1.2e-184 | |
| MGI|MGI:104689 | 539 | Cct4 "chaperonin containing Tc | 0.431 | 0.673 | 0.684 | 1.2e-184 | |
| UNIPROTKB|F1SQN1 | 539 | CCT4 "T-complex protein 1 subu | 0.431 | 0.673 | 0.684 | 2e-184 | |
| UNIPROTKB|F1NPG8 | 538 | CCT4 "T-complex protein 1 subu | 0.431 | 0.674 | 0.684 | 3.3e-184 | |
| UNIPROTKB|P50991 | 539 | CCT4 "T-complex protein 1 subu | 0.431 | 0.673 | 0.682 | 5.3e-184 | |
| UNIPROTKB|B7Z9L0 | 483 | CCT4 "T-complex protein 1 subu | 0.431 | 0.751 | 0.682 | 5.3e-184 |
| FB|FBgn0032444 CG5525 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 4.7e-196, Sum P(2) = 4.7e-196
Identities = 283/364 (77%), Positives = 326/364 (89%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELS+AQD+ AGDGTTSVV++AG+LLEA EKLL KG+HPT ISD+FQ+ + K VEIL
Sbjct: 83 MLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILK 142
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MSTPI L DRE LIKSA+TSLNSKVVSQQ+SLLAPIAVDAVLKV +P ++T+VDLK+IK
Sbjct: 143 QMSTPIELDDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKNIK 202
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI LGGTVEDTELVDGLVFT +SA N PKR+EKAKIGLIQFCIS PKTDMDH V+VSD
Sbjct: 203 VISSLGGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSD 262
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+AMDRVLKEER+YILNIVKQIKK+GCNVLLVQKSILRDA+SDLA HFLDKIK +VVKD+
Sbjct: 263 YAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDV 322
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
EREDIEFVCKTL+ RPIASLDHF E+LSSADLVEE+ +G ++FVKI+GIQN GRT++++
Sbjct: 323 EREDIEFVCKTLHCRPIASLDHFTAENLSSADLVEEVASGTNKFVKITGIQNMGRTVSII 382
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
RGSNKLVL+EAARSLHDALCVVRCLVK RA I GGGAPEIE++L+L A TV G+DAY
Sbjct: 383 CRGSNKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAY 442
Query: 718 CFRA 721
CFRA
Sbjct: 443 CFRA 446
|
|
| UNIPROTKB|F1N0E5 CCT4 "T-complex protein 1 subunit delta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 5.2e-186, Sum P(2) = 5.2e-186
Identities = 253/365 (69%), Positives = 322/365 (88%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 93 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 152
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 153 DMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 212
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 213 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 271
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 272 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 331
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 332 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 391
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 392 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 451
Query: 717 YCFRA 721
YC RA
Sbjct: 452 YCIRA 456
|
|
| UNIPROTKB|Q2T9X2 CCT4 "T-complex protein 1 subunit delta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 1.1e-185, Sum P(2) = 1.1e-185
Identities = 253/365 (69%), Positives = 321/365 (87%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 93 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 152
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 153 DMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 212
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 213 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 271
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 272 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 331
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 332 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 391
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 392 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 451
Query: 717 YCFRA 721
YC RA
Sbjct: 452 YCIRA 456
|
|
| RGD|727937 Cct4 "chaperonin containing Tcp1, subunit 4 (delta)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1324 (471.1 bits), Expect = 1.4e-185, Sum P(2) = 1.4e-185
Identities = 252/365 (69%), Positives = 322/365 (88%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F P+ L SA+L EE+ G+ + KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRA 721
YC RA
Sbjct: 449 YCVRA 453
|
|
| UNIPROTKB|F1Q331 CCT4 "T-complex protein 1 subunit delta" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 1.2e-184, Sum P(2) = 1.2e-184
Identities = 251/365 (68%), Positives = 321/365 (87%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 269 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCTSPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRA 721
YC RA
Sbjct: 449 YCVRA 453
|
|
| MGI|MGI:104689 Cct4 "chaperonin containing Tcp1, subunit 4 (delta)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 1.2e-184, Sum P(2) = 1.2e-184
Identities = 250/365 (68%), Positives = 321/365 (87%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKD+
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDV 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRA 721
YC RA
Sbjct: 449 YCVRA 453
|
|
| UNIPROTKB|F1SQN1 CCT4 "T-complex protein 1 subunit delta" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
Identities = 250/365 (68%), Positives = 321/365 (87%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DR+ L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 269 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKMLKITGCASPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRA 721
YC RA
Sbjct: 449 YCVRA 453
|
|
| UNIPROTKB|F1NPG8 CCT4 "T-complex protein 1 subunit delta" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 3.3e-184, Sum P(2) = 3.3e-184
Identities = 250/365 (68%), Positives = 319/365 (87%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++AG+LL+A +LL KGIHPT IS++FQKA K +E+LT
Sbjct: 89 MLVELSKAQDIEAGDGTTSVVVIAGALLDACSRLLQKGIHPTIISESFQKALEKGIEVLT 148
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
M+ P+ L+DRE L+ SA TSLNSKVV Q +SLL+P++VDAV+KV++P ++VDL+DIK
Sbjct: 149 NMAQPVELSDRETLLNSATTSLNSKVVCQYSSLLSPMSVDAVMKVIDPSTASSVDLRDIK 208
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 209 IVKKLGGTIDDCELVEGLVLTQKVANT-GVTRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 267
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKKAGCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 268 YAQMDRVLREERAYILNLVKQIKKAGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 327
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F P+ L SA+L EE+ G+ + +KI+G NPG+T+T+
Sbjct: 328 EREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVNLNGSGKLIKITGCTNPGKTVTI 387
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLVL+EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+L +YA T+ G+D+
Sbjct: 388 VVRGSNKLVLEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLNEYARTLRGMDS 447
Query: 717 YCFRA 721
YC RA
Sbjct: 448 YCVRA 452
|
|
| UNIPROTKB|P50991 CCT4 "T-complex protein 1 subunit delta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 249/365 (68%), Positives = 322/365 (88%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 90 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 149
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 150 DMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 209
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK +N +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 210 IVKKLGGTIDDCELVEGLVLTQKVSN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 268
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++V+KDI
Sbjct: 269 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDI 328
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 329 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTI 388
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 389 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 448
Query: 717 YCFRA 721
YC RA
Sbjct: 449 YCVRA 453
|
|
| UNIPROTKB|B7Z9L0 CCT4 "T-complex protein 1 subunit delta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 249/365 (68%), Positives = 322/365 (88%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 34 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 93
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SA TSLNSKVVSQ +SLL+P++V+AV+KV++P T+VDL+DIK
Sbjct: 94 DMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIK 153
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK +N +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 154 IVKKLGGTIDDCELVEGLVLTQKVSN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 212
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y+ MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++V+KDI
Sbjct: 213 YAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDI 272
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 273 EREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTI 332
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 333 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 392
Query: 717 YCFRA 721
YC RA
Sbjct: 393 YCVRA 397
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5R637 | TCPD_PONAB | No assigned EC number | 0.6645 | 0.5326 | 0.8311 | yes | N/A |
| P47208 | TCPD_CAEEL | No assigned EC number | 0.5862 | 0.5315 | 0.8277 | yes | N/A |
| Q75A36 | TCPD_ASHGO | No assigned EC number | 0.5537 | 0.5267 | 0.8374 | yes | N/A |
| P50999 | TCPD_SCHPO | No assigned EC number | 0.5729 | 0.5303 | 0.8462 | yes | N/A |
| Q6C100 | TCPD_YARLI | No assigned EC number | 0.5093 | 0.5267 | 0.8406 | yes | N/A |
| P50991 | TCPD_HUMAN | No assigned EC number | 0.6666 | 0.5326 | 0.8311 | yes | N/A |
| Q54CL2 | TCPD_DICDI | No assigned EC number | 0.6083 | 0.5291 | 0.8348 | yes | N/A |
| Q6CL82 | TCPD_KLULA | No assigned EC number | 0.5518 | 0.5291 | 0.8396 | yes | N/A |
| Q6BXF6 | TCPD_DEBHA | No assigned EC number | 0.5684 | 0.5291 | 0.8348 | yes | N/A |
| P80315 | TCPD_MOUSE | No assigned EC number | 0.6708 | 0.5326 | 0.8311 | yes | N/A |
| Q7TPB1 | TCPD_RAT | No assigned EC number | 0.6749 | 0.5326 | 0.8311 | yes | N/A |
| Q6FQT2 | TCPD_CANGA | No assigned EC number | 0.5518 | 0.5291 | 0.8412 | yes | N/A |
| Q2T9X2 | TCPD_BOVIN | No assigned EC number | 0.6770 | 0.5326 | 0.8265 | yes | N/A |
| P39078 | TCPD_YEAST | No assigned EC number | 0.5580 | 0.5291 | 0.8428 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 841 | |||
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 0.0 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 0.0 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 1e-168 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 1e-153 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 1e-144 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 1e-129 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 1e-126 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 1e-118 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 1e-111 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 1e-110 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-92 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 2e-83 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 2e-81 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 7e-80 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 8e-79 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 4e-78 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 1e-77 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 3e-75 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 5e-74 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 5e-73 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-72 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 9e-71 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-69 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 9e-67 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 3e-66 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 2e-63 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 9e-63 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 5e-56 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 7e-56 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 8e-52 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 2e-51 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 5e-51 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-46 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 1e-45 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 1e-43 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 4e-43 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 9e-43 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 1e-42 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 8e-39 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 9e-39 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 1e-35 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 1e-34 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 9e-34 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 9e-32 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 1e-31 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 1e-30 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 7e-26 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 1e-25 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 3e-22 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 5e-22 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 1e-21 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 3e-21 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 4e-21 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 6e-20 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-19 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 1e-18 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 2e-18 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 4e-17 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 2e-16 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 2e-15 | |
| cd03334 | 261 | cd03334, Fab1_TCP, TCP-1 like domain of the eukary | 7e-14 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 1e-13 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 9e-13 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 2e-12 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 3e-12 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 7e-12 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 4e-11 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 1e-10 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 1e-09 | |
| PTZ00114 | 555 | PTZ00114, PTZ00114, Heat shock protein 60; Provisi | 6e-08 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 4e-05 | |
| PTZ00114 | 555 | PTZ00114, PTZ00114, Heat shock protein 60; Provisi | 2e-04 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 3e-04 | |
| PRK12851 | 541 | PRK12851, groEL, chaperonin GroEL; Reviewed | 3e-04 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 4e-04 | |
| cd03334 | 261 | cd03334, Fab1_TCP, TCP-1 like domain of the eukary | 6e-04 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 7e-04 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 0.001 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 0.002 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 0.002 | |
| PRK12850 | 544 | PRK12850, groEL, chaperonin GroEL; Reviewed | 0.002 | |
| PRK12852 | 545 | PRK12852, groEL, chaperonin GroEL; Reviewed | 0.003 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 766 bits (1980), Expect = 0.0
Identities = 333/483 (68%), Positives = 398/483 (82%), Gaps = 34/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++AG+LL A E LL KGIHPT IS++FQ AA K VEIL
Sbjct: 66 MLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILD 125
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS P+ L DRE+LIKSA TSLNSKVVSQ +SLLAPIAVDAVLKV++P TNVDLKDI+
Sbjct: 126 SMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIR 185
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANV-NGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++KLGGT+EDTELVDGLVFTQK++ GP R+EKAKIGLIQFC+SPPKTDMD+ +VV+
Sbjct: 186 IVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVN 245
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY+ MDR+L+EER YILN+ K+IKK+GCNVLL+QKSILRDA+SDLA+HFL K+K++VVKD
Sbjct: 246 DYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKD 305
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IERE+IEF+CKT+ +P+AS+DHF + L SADLVEE+ G+ + VKI+G++NPG+T+T+
Sbjct: 306 IEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTI 365
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+VRGSNKLVLDEA RSLHDALCV+RCLVK+
Sbjct: 366 LVRGSNKLVLDEAERSLHDALCVIRCLVKK------------------------------ 395
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
RALI GGGAPEIE++L+L+++A T++G++ YC RAFA ALEVIP TLAENAGLNPIS
Sbjct: 396 ---RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPIS 452
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELRNRHAQGE GINVRKGAITNILEENVVQPLLVSTSAITL+TETVR ILKIDDI
Sbjct: 453 IVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDI 512
Query: 837 VNT 839
V
Sbjct: 513 VLA 515
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 704 bits (1819), Expect = 0.0
Identities = 323/483 (66%), Positives = 398/483 (82%), Gaps = 34/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AG+LL A E+LL+KGIHPT IS++FQ AA + ++IL
Sbjct: 67 MLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILD 126
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMS P+ L+DRE L+KSA TSL+SKVVSQ +SLLAP+AVDAVLKV++P+ NVDL DIK
Sbjct: 127 EMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVDLNDIK 186
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNG-PKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
V++KLGGT++DTEL++GLVFTQK++ G P R+EKAKIGLIQF ISPPKTDM+++++V+
Sbjct: 187 VVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQISPPKTDMENQIIVN 246
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY+ MDRVLKEERAYILNIVK+IKK GCNVLL+QKSILRDA++DLA+HFL K+K++VVKD
Sbjct: 247 DYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKD 306
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IERE+IEF+CKT+ +PIAS+DHF + L SA+LVEE+ + + +KI+GIQN G+T+TV
Sbjct: 307 IEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTV 366
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV+DEA RSLHDALCV+RCLVK+
Sbjct: 367 VVRGSNKLVIDEAERSLHDALCVIRCLVKK------------------------------ 396
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
R LIAGGGAPEIE++ +L+KYA T+ G+++YC RAFA ALEVIP TLAENAGLNPI
Sbjct: 397 ---RGLIAGGGAPEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIK 453
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELRNRHA GE T GI+VRKG ITN+LEE+V+QPLLV+TSAITL++ETVRSILKIDDI
Sbjct: 454 VVTELRNRHANGEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDI 513
Query: 837 VNT 839
V T
Sbjct: 514 VFT 516
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 496 bits (1279), Expect = e-168
Identities = 203/276 (73%), Positives = 249/276 (90%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
MD+ +VV+DY+ MDR+L+EER YILN+ K+IKK+GCNVLL+QKSILRDA+SDLA+HFL K
Sbjct: 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK 297
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+K++VVKDIERE+IEF+CKT+ +P+AS+DHF + L SADLVEE+ G+ + VKI+G++
Sbjct: 298 LKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVK 357
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NPG+T+T++VRGSNKLVLDEA RSLHDALCV+RCLVK+RALI GGGAPEIE++L+L+++A
Sbjct: 358 NPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWA 417
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T++G++ YC RAFA ALEVIP TLAENAGLNPIS VTELRNRHAQGE GINVRKGAI
Sbjct: 418 RTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAI 477
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
TNILEENVVQPLLVSTSAITL+TETVR ILKIDDI+
Sbjct: 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 458 bits (1180), Expect = e-153
Identities = 212/343 (61%), Positives = 268/343 (78%), Gaps = 3/343 (0%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGM--DKMIQASNGEVTITNDGATILKQMNV 76
D A ++ ++I K + I + G+ + S G T L Q
Sbjct: 173 DPENAKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQ- 231
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
I P M+++++V+DY+ MDRVLKEERAYILNIVK+IKK GCNVLL+QKSILRDA++DL
Sbjct: 232 ISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDL 291
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRF 196
A+HFL K+K++VVKDIERE+IEF+CKT+ +PIAS+DHF + L SA+LVEE+ + +
Sbjct: 292 ALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKI 351
Query: 197 VKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELS 256
+KI+GIQN G+T+TVVVRGSNKLV+DEA RSLHDALCV+RCLVK+R LIAGGGAPEIE++
Sbjct: 352 IKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411
Query: 257 LKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGI 316
+L+KYA T+ G+++YC RAFA ALEVIP TLAENAGLNPI VTELRNRHA GE T GI
Sbjct: 412 RRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHANGEKTAGI 471
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+VRKG ITN+LEE+V+QPLLV+TSAITL++ETVRSILKIDDI+
Sbjct: 472 SVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIV 514
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 434 bits (1118), Expect = e-144
Identities = 183/480 (38%), Positives = 257/480 (53%), Gaps = 82/480 (17%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE++K+QD E GDGTT+VV++AG LL+ AEKLL GIHPT I ++KA K +EIL
Sbjct: 66 LLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILK 125
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E++ PI + DRE L+K A TSLNSK+VS L + VDAVLKV + +VDL I+
Sbjct: 126 EIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKE--NGDVDLGVIR 183
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
V +K GG++ED+ELV G+VF + + PKR+E AKI L+ + VV++
Sbjct: 184 VEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY--------VVIA- 234
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
I D A+H+L K+ ++ V+ +
Sbjct: 235 -------------------------------------EKGIDDEALHYLAKLGIMAVRRV 257
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
+ED+E + K ++ L+ PE L +A LVEE G+ ++ I G + T++
Sbjct: 258 RKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGK-VATIL 316
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ ++ LDEA RSLHDALC VR V+ ++ GGGA EIELS L + A T+ G +
Sbjct: 317 LRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQL 376
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
A FA ALEVIP TLAENAGL+PI
Sbjct: 377 GIEA---------------------------------FADALEVIPRTLAENAGLDPIEV 403
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VT+LR +HA+G G +V G I ++ E ++ PL V A+ +TE IL IDDI+
Sbjct: 404 VTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDII 463
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 396 bits (1019), Expect = e-129
Identities = 188/494 (38%), Positives = 281/494 (56%), Gaps = 47/494 (9%)
Query: 352 ILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
ILK DI LVE++K QD E GDGTT+ V++AG LLE AE LL + IHPT I +
Sbjct: 60 ILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEG 119
Query: 405 FQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVN 464
++ AA K +E+L E++ + D++ L K A TSL K LA + VDAVL+V
Sbjct: 120 YRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAE 179
Query: 465 PQRD-TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCIS 523
+ VDL +IK+ +K GG+V+DTEL+ G+V ++ + PKRVE AKI L+ +
Sbjct: 180 KRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLE 239
Query: 524 PPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI 583
KT++D K+ ++ + L++E A + +V +I G NV+ QK I DLA
Sbjct: 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKG-----IDDLAQ 294
Query: 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 643
H+L K +L V+ +++ D+E + + + + ++D PE L A+LVEE G+ + V
Sbjct: 295 HYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVF 354
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
+ G +NP + +T+++RG + V+DE R+L DAL VV ++ ++AGGGA EIEL+ +
Sbjct: 355 VEGCKNP-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKR 413
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
L +YA +V G R +A AFA ALE IP
Sbjct: 414 LREYARSVGG------REQLA---------------------------VEAFADALEEIP 440
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
TLAENAGL+PI T+ ELR H +G G++V G + ++LE+ V++PL V AI +
Sbjct: 441 RTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSA 500
Query: 824 TETVRSILKIDDIV 837
TE IL+IDD++
Sbjct: 501 TEAATMILRIDDVI 514
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 387 bits (997), Expect = e-126
Identities = 172/480 (35%), Positives = 266/480 (55%), Gaps = 49/480 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE +K+QD E GDGTT+ V++AG LLE AEKL+ GIHPT I ++ A ++ L
Sbjct: 47 LLVEAAKSQDEEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALE 106
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E+S P++ D E+L+ A TSLNSK+ S+++ LL + VDAVL ++ D+ +I
Sbjct: 107 ELSIPVS-DDDEDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIE-----KFDVGNIG 160
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+ GG++ED+EL++G+V + + + PKR+E KI L+ + KT+ +
Sbjct: 161 VIKIEGGSLEDSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIISTAEE 220
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+R+L+ E +L ++++I AG N++++QK I DLA+HFL K +L ++ +
Sbjct: 221 L---ERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGI-----DDLALHFLAKNGILALRRV 272
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ED+E + K ++SLD P+ L SA VEE G + I G + T++
Sbjct: 273 KKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKTTFIEGCLSGK-VATIL 331
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ LDE R++ DAL V+ +K ++ GGGA E+ELS L +YA +VSG +
Sbjct: 332 LRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYAKSVSGKEQL 391
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
A FA+ALEVIP TLAENAGL+PI
Sbjct: 392 GIEA---------------------------------FAEALEVIPRTLAENAGLDPIEV 418
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +L+ H +G GI+ G I ++ E ++ PL V SA+ + E IL ID I+
Sbjct: 419 LAKLKAAHKKGN-NLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQII 477
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 367 bits (945), Expect = e-118
Identities = 195/497 (39%), Positives = 288/497 (57%), Gaps = 49/497 (9%)
Query: 351 SILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403
+ILK DI LVE++K QD E GDGTT+ V++AG LLE AE LL + IHPT I +
Sbjct: 60 TILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIE 119
Query: 404 AFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQA-SLLAPIAVDAVLKV 462
++KAA K +EI+ E++T I+ DR+ L K A TSL SK ++ A LA + V+AV +V
Sbjct: 120 GYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQV 179
Query: 463 VNPQRD--TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520
+ D VDL +IK+++K GG+++DTELV+G+V ++ + PKRVE AKI L+
Sbjct: 180 AELRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDA 239
Query: 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISD 580
+ KT++D ++ ++D + + L +E A + +V +I AG NV++ QK I D
Sbjct: 240 PLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKG-----IDD 294
Query: 581 LAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSR 640
+A H+L K +L V+ +++ DIE + + R ++S+D L A LVEE G +
Sbjct: 295 VAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDK 354
Query: 641 FVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700
V + G +NP + +T+++RG + V+DE RSL DAL VV ++ ++AGGGA EIE+
Sbjct: 355 MVFVEGCKNP-KAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEI 413
Query: 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALE 760
+L+L YA + G R +A AFA ALE
Sbjct: 414 ALRLRSYARKIGG------REQLA---------------------------IEAFADALE 440
Query: 761 VIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 820
IP LAENAGL+PI + ELR +H +G GINV G I ++LE V++PL V AI
Sbjct: 441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAI 500
Query: 821 TLSTETVRSILKIDDIV 837
+TE IL+IDD++
Sbjct: 501 KSATEAATMILRIDDVI 517
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-111
Identities = 160/490 (32%), Positives = 257/490 (52%), Gaps = 57/490 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE++K QD EAGDGTT+ V++AG+LL+ AEKL+ GIHPT I ++ A K VE L
Sbjct: 69 LLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELK 128
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E++ P++ ++ E +K A TS+ SK + + + V+AV KV DL I
Sbjct: 129 EIAKPVSDSEEE--LKIAITSVASKSANSD-EEIGELVVEAVEKV----GKEQSDLDGII 181
Query: 478 VIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
++++ GG+ + E+V+G+VF + + KR+E KI L+ + K ++ ++V
Sbjct: 182 IVKESGGSETELEVVEGMVFDKGYLSPYFMP-DKRLENPKILLLDKKLEIKKPELPLEIV 240
Query: 535 VSDYSAMDRVLKEER-AYILNIVKQIKKAGCNVLLV-QKSILRDAISDLAIHFLDKIKVL 592
+S + + ++E + +V I + G NV++V I DLA +L+ I +L
Sbjct: 241 ISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPG-----IDDLAKAYLEDIAIL 295
Query: 593 VVKDIEREDI-EFVCKTLNTRPIASLDHFLPEHL--SSADLVEEIPAGNSRFVKISGIQN 649
+ +++ED+ E + K + ++ L L +A LVEE G+ K+ +
Sbjct: 296 TGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355
Query: 650 P-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 708
G T++VRG+ ++ LDE R + DAL VVR V++ ++ GGGA EIE +L+L +YA
Sbjct: 356 KAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYA 415
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 768
TV G G + AFA+ALE P LAE
Sbjct: 416 MTVEG--------------------------------GDEQLGIEAFARALEAPPRQLAE 443
Query: 769 NAGLNPISTVTELRNRHAQGETTTGINVRKGAIT-NILEENVVQPLLVSTSAITLSTETV 827
NAGL+PI +++LR+ HA T GI+ G +++E ++ PL V SA+ + E
Sbjct: 444 NAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAA 501
Query: 828 RSILKIDDIV 837
+L IDDI+
Sbjct: 502 GLLLTIDDII 511
|
Length = 524 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 346 bits (890), Expect = e-110
Identities = 187/489 (38%), Positives = 273/489 (55%), Gaps = 47/489 (9%)
Query: 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414
I +LVELSK+QD E GDGTT VV++AG+LLE AEKLL +GIHP I+D +++A VE
Sbjct: 78 IAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVE 137
Query: 415 ILTEMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNV 471
L E++ + ++E LI++A TSL SK+VS+ A IAVDAVL V + +R D N
Sbjct: 138 HLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNF 197
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
+L IKV K+GG +EDT+LV G+V + ++ PK V+ AKI ++ PPK H
Sbjct: 198 EL--IKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKH 255
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
K+ ++ ++ + E+ Y +V+Q+K AG N+++ Q D A H L + +
Sbjct: 256 KLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQW-----GFDDEANHLLLQNGL 310
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQN 649
V+ + +IE + R + + PE L A LV EI G + + I G N
Sbjct: 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPN 370
Query: 650 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
+ +T+ +RG NK++++EA RSLHDALCVVR L++ ++ GGGA EI
Sbjct: 371 -SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEI----------- 418
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
C SL + K AD SGI+ Y RAFA ALE IPL LAEN
Sbjct: 419 -------SC---------------SLAVEKAADKCSGIEQYAMRAFADALESIPLALAEN 456
Query: 770 AGLNPISTVTELRNRH-AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
+GLNPI T++E++ R + GI+ ++ E+ V + L+ I L+T+ V+
Sbjct: 457 SGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK 516
Query: 829 SILKIDDIV 837
ILKIDD++
Sbjct: 517 MILKIDDVI 525
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 300 bits (771), Expect = 1e-92
Identities = 181/489 (37%), Positives = 274/489 (56%), Gaps = 47/489 (9%)
Query: 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414
I ++VELSK+QD E GDGTT VV++AG+LLE AE+LL KGIHP I++ F++AA VE
Sbjct: 82 IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVE 141
Query: 415 ILTEMSTPITLA--DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNV 471
L E+S I+ +RE LI++A TSL SK+VS+ A IAVDAVL V + +R D +
Sbjct: 142 HLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDF 201
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
DL IKV K+GG++EDT+L+ G++ + ++ PK V+ AKI ++ PPK H
Sbjct: 202 DL--IKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKH 259
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
K+ +S ++ K E+ ++ IKK+G N+++ Q D A H L + +
Sbjct: 260 KLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQW-----GFDDEANHLLLQNDL 314
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQN 649
V+ + +++E + R + + L A LV EI G R + I +N
Sbjct: 315 PAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKN 374
Query: 650 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
+ +T+ +RG NK++++EA RS+HDALCVVR L+K ++ GGGA EI SL +++ AD
Sbjct: 375 -SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEAD 433
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
KY SG++ Y RAFA ALE IP+ LAEN
Sbjct: 434 -----------------------------KY----SGVEQYAIRAFADALETIPMALAEN 460
Query: 770 AGLNPISTVTELRNRH-AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
+GL+PI T++ L++ + G++ ++ E+ V + L+ I L+T+ VR
Sbjct: 461 SGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYGTNDMKEQFVFETLIGKKQQILLATQLVR 520
Query: 829 SILKIDDIV 837
ILKIDD++
Sbjct: 521 MILKIDDVI 529
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 2e-83
Identities = 109/300 (36%), Positives = 158/300 (52%), Gaps = 35/300 (11%)
Query: 95 AMDRVLKEERAYILNIVKQIKKAG-----------------------------CNVLLVQ 125
A+ +V KE L +++ KK G +LL+
Sbjct: 166 AVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLD 225
Query: 126 KS-----ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180
I I D A+H+L K+ ++ V+ + +ED+E + K ++ L+ PE L
Sbjct: 226 CKLEYVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDL 285
Query: 181 SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK 240
+A LVEE G+ ++ I G + T+++RG+ ++ LDEA RSLHDALC VR V+
Sbjct: 286 GTAGLVEETKIGDEKYTFIEGCKGGK-VATILLRGATEVELDEAERSLHDALCAVRAAVE 344
Query: 241 QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 300
++ GGGA EIELS L + A T+ G + AFA ALEVIP TLAENAGL+PI V
Sbjct: 345 DGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVV 404
Query: 301 TELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
T+LR +HA+G G +V G I ++ E ++ PL V A+ +TE IL IDDI+V
Sbjct: 405 TKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 2e-81
Identities = 156/502 (31%), Positives = 256/502 (50%), Gaps = 61/502 (12%)
Query: 352 ILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
ILK+ DI LV+++K+QD E GDGTTSVV++AG L+ A+ + G+HP I
Sbjct: 61 ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120
Query: 405 FQKAAAKCVEILTEMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVL 460
++KA +E + E++ I D RE L K AAT+LNSK+++ + A + VDAVL
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180
Query: 461 KVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG----PKRVEKAKIG 516
+ D ++DL I + + GG++ED++LV+G+ F +K+ + G PK+ + KI
Sbjct: 181 SL-----DDDLDLDMIGIKKVPGGSLEDSQLVNGVAF-KKTFSYAGFEQQPKKFKNPKIL 234
Query: 517 LIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRD 576
L+ + + +V V D ++ E I + +++I K+G NV+L +
Sbjct: 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLP---- 290
Query: 577 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA 636
I DLA + + + ED++ V + ++ + + L + L EE
Sbjct: 291 -IGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQV 349
Query: 637 GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696
G R+ +G +T T+++RG + ++EA RSLHDA+ +VR +K +++AGGGA
Sbjct: 350 GGERYNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408
Query: 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFA 756
E+ELS KY L Y+ T++G AFA
Sbjct: 409 EMELS----KY-----------------------------LRDYSRTIAGKQQLVINAFA 435
Query: 757 QALEVIPLTLAENAGLNPISTVTELRNRHAQGETT-TGINVRKGAITNILEENVVQPLLV 815
+ALE+IP L +NAG + + +LR +HAQG G+++ I + E V +P LV
Sbjct: 436 KALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLV 495
Query: 816 STSAITLSTETVRSILKIDDIV 837
+A+T +TE IL +D+ +
Sbjct: 496 KINALTAATEAACLILSVDETI 517
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 7e-80
Identities = 152/491 (30%), Positives = 247/491 (50%), Gaps = 63/491 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV++SK QD E GDGTTSV ++A LL AEKL+ + IHP TI + ++ A A E L
Sbjct: 73 VLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALL 132
Query: 418 EMSTPITL---ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + A RE+L+ A T+L+SK+++Q A +AVDAVL++ + +L
Sbjct: 133 SSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRL-----KGSGNLD 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH--- 531
I++I+KLGG+++D+ L +G + K VN PKR+E AKI LI T MD
Sbjct: 188 AIQIIKKLGGSLKDSYLDEGFLL-DKKIGVNQPKRIENAKI-LIA------NTPMDTDKI 239
Query: 532 -----KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586
KV V + + + + E+ + N V++I K G N I R I +
Sbjct: 240 KIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCF-----INRQLIYNYPEQLF 294
Query: 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
++ ++ + + +E + ++ DH L + L+EEI G + ++ SG
Sbjct: 295 ADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSG 354
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
+ G T+V+RG+++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + +
Sbjct: 355 VAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEE 413
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
A G K + + AFA+AL +P +
Sbjct: 414 LAKKTPG-------------------------KKSLAIE--------AFAKALRQLPTII 440
Query: 767 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826
A+NAG + V +LR H G TT G+++RKG + ++ E + + V + ++E
Sbjct: 441 ADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEA 500
Query: 827 VRSILKIDDIV 837
IL++DDI+
Sbjct: 501 AEMILRVDDII 511
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 8e-79
Identities = 155/535 (28%), Positives = 264/535 (49%), Gaps = 62/535 (11%)
Query: 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID----DILVELSKAQD 367
T+ G N + N L++ L V+ A T+ E L++ +LV S+ Q+
Sbjct: 36 TSLGPNGMNKMVINHLDK-----LFVTNDAATILRE-----LEVQHPAAKLLVMASEMQE 85
Query: 368 IEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMS--TPITL 425
E GDGT V+++AG LL AE+L+ G+HP+ I ++ A K +E+L E+ L
Sbjct: 86 NEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDL 145
Query: 426 ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGT 485
D++ LIK+ S++SK L+ + A V+ P+ N ++ +I+V++ +GG+
Sbjct: 146 RDKKELIKALKASISSKQYGN-EDFLSQLVAKACSTVL-PKNPQNFNVDNIRVVKIMGGS 203
Query: 486 VEDTELVDGLVFTQKSANVNGP-KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRV 544
+ ++E++ G+VF + G KRV+KAK+ + + T+ V++ + +
Sbjct: 204 LSNSEVIKGMVFNR---EAEGSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNY 260
Query: 545 LKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEF 604
K E I ++K I +G NV++ S+ D+A+H+L++ ++V+K + ++
Sbjct: 261 SKGEENQIEAMIKAIADSGVNVIVTGGSV-----GDMALHYLNRYGIMVLKIPSKFELRR 315
Query: 605 VCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 664
+CKT+ P+ L PE L D V G + R T+++RGS K
Sbjct: 316 LCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKN 375
Query: 665 VLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIA 724
+LD+ R++ D + VV+ LVK +
Sbjct: 376 LLDDIERAIDDGVNVVKALVKD---------------------------------GRFLP 402
Query: 725 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 784
G GA EIEL+ +LTKYA+ G+D Y + FA+A E+IP TLAENAGLNP + +L
Sbjct: 403 GAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAA 462
Query: 785 HAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
H +G T+ GI++ + + E + L AI L+TE ++L++D I+
Sbjct: 463 HKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQII 517
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 4e-78
Identities = 153/557 (27%), Positives = 263/557 (47%), Gaps = 101/557 (18%)
Query: 289 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348
E A L I EL T+ G N + N LE+ L V++ A T+ E
Sbjct: 6 LEEAVLRNIEACKEL---SQITRTSYGPNGMNKMVINHLEK-----LFVTSDAATILRE- 56
Query: 349 VRSILKID----DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
L++ +LV S+ Q+ E GDGT VV++AG LLE AE+LL G+HP+ I +
Sbjct: 57 ----LEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEG 112
Query: 405 FQKAAAKCVEILTEMS--TPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV 462
++KA K +EIL E+ L ++E + K+ T++ SK + L+P+ +A + V
Sbjct: 113 YEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNE-DFLSPLVAEACISV 171
Query: 463 VNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCI 522
+ P+ N ++ +I+V++ LGG++ED+++V G+VF ++ KRV+KAK+ +
Sbjct: 172 L-PENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGS--VKRVKKAKVAVF---S 225
Query: 523 SPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLA 582
P D+ V+V+ ++ DLA
Sbjct: 226 CP--FDIGVNVIVAG--------------------------------------GSVGDLA 245
Query: 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFV 642
+H+ +K ++V+K + ++ +C+T+ P+ L PE + D V G+++ V
Sbjct: 246 LHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVV 305
Query: 643 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702
+ + T+V+RG+ + +LD+ R++ D + V + L K
Sbjct: 306 VFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTK----------------- 348
Query: 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVI 762
D + G GA EIEL+ KL +Y + G++ Y + FA+A EV+
Sbjct: 349 ------------DG----RFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVV 392
Query: 763 PLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAI 820
P TLAENAGL+ ++EL H +G + G+++ G + E + L AI
Sbjct: 393 PRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAI 452
Query: 821 TLSTETVRSILKIDDIV 837
L+TE ++L++D I+
Sbjct: 453 KLATEAAVTVLRVDQII 469
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-77
Identities = 157/491 (31%), Positives = 248/491 (50%), Gaps = 63/491 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
ILV++SK QD E GDGTTSVV++AG LL AEKLL + IHP TI + ++ A + L
Sbjct: 85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALE 144
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
E++ + +E+L+ A T+L+SK+++ + A +AVDAVL++ + N+D
Sbjct: 145 EIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRL---KGSGNLDY- 200
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH--- 531
I++I+K GGT+ D+ L DG + +K V PKR+E KI L+ T MD
Sbjct: 201 -IQIIKKPGGTLRDSYLEDGFIL-EKKIGVGQPKRLENCKI-LVA------NTPMDTDKI 251
Query: 532 -----KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586
KV V + + E+ + N V +I GCNV I R I +
Sbjct: 252 KIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVF-----INRQLIYNYPEQLF 306
Query: 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
+ ++ ++ + + +E + L +++ D L DL+EEI G + ++ SG
Sbjct: 307 AEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSG 366
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
G T+V+RG++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + +
Sbjct: 367 CAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEE 425
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
A V G + +A IE AFA+AL IP +
Sbjct: 426 LAKKVEGKKS------LA------IE---------------------AFAKALRQIPTII 452
Query: 767 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826
A+N G + V++LR H +G T GI++ KG + ++ E + + V S + +TE
Sbjct: 453 ADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEA 512
Query: 827 VRSILKIDDIV 837
IL++DDI+
Sbjct: 513 AEMILRVDDII 523
|
Length = 533 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 3e-75
Identities = 156/502 (31%), Positives = 257/502 (51%), Gaps = 60/502 (11%)
Query: 351 SILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403
+ILK+ DI LV+++K+QD E GDGTTSVVI+AG LL+ A+ + +G+HP I
Sbjct: 62 TILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIR 121
Query: 404 AFQKAAAKCVEILTEMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVL 460
+++A + +E + E++ I RE L K AAT+L+SK+++ + + VDAVL
Sbjct: 122 GYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVL 181
Query: 461 KVVNPQRDTN-VDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG----PKRVEKAKI 515
D + +DLK I V + GG +ED+ LV+G+ F +K+ + G PK+ KI
Sbjct: 182 -----SLDRDDLDLKLIGVKKVQGGALEDSVLVNGVAF-KKTFSYAGFEQQPKKFANPKI 235
Query: 516 GLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILR 575
L+ + + ++ V D ++ E A I +++I ++G N++L +
Sbjct: 236 LLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLP--- 292
Query: 576 DAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP 635
I DLA + + + ED++ V K ++ + L + L EE
Sbjct: 293 --IGDLATQYFADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQ 350
Query: 636 AGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 695
G+ R+ +G + +T T+++RG + ++EA RSLHDA+ +VR +K + ++AGGGA
Sbjct: 351 IGSERYNLFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGA 409
Query: 696 PEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 755
E+ELS L Y+ T+ G + LI AF
Sbjct: 410 IEMELSKCLRDYSKTIDGK-----QQLIIN----------------------------AF 436
Query: 756 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLV 815
A+ALEVIP L ENAG + I + +LR+ HA+G G+++ I + E V +P LV
Sbjct: 437 AKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTEDIGDNFENFVWEPALV 496
Query: 816 STSAITLSTETVRSILKIDDIV 837
+A+ +TE +IL +D+ +
Sbjct: 497 KINALKAATEAACTILSVDETI 518
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 5e-74
Identities = 163/562 (29%), Positives = 281/562 (50%), Gaps = 73/562 (12%)
Query: 310 GETTTGINVRKG------AITNILEENV----VQPLLVSTSA---ITLSTETVRSILKID 356
GE T+G +VR AI NI++ ++ + +LV IT T+ +L+++
Sbjct: 1 GERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 60
Query: 357 D----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKC 412
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ + IHPTTI ++ A +
Sbjct: 61 HPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEA 120
Query: 413 VEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDT 469
V+ + E +S + +E+LI A TS++SK++ + A + VDA+L K N + T
Sbjct: 121 VKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKT 180
Query: 470 NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM 529
+K + +++ G + +++ LV+G A+ P RV+ AKI + F + K +
Sbjct: 181 KYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240
Query: 530 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589
+VVV+D ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTG-----GIDDMCLKYFVEA 295
Query: 590 KVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVK 643
+ V+ +++ED+ + K +++L + F P +L A+ V + G+ +
Sbjct: 296 GAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELIL 355
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
I G + + ++++RG+N +LDE RSLHDALCVV+ R L +
Sbjct: 356 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVK-----RTLESN----------- 398
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
+++ GGGA E LS+ L +A T+ + FA+AL VIP
Sbjct: 399 -----------------SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIP 441
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETT--------TGINVRKGAITNILEENVVQPLLV 815
TLA NA + V +LR HA + G+++ G + + LE V++P +
Sbjct: 442 KTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVS 501
Query: 816 STSAITLSTETVRSILKIDDIV 837
++ +TE +IL+IDD++
Sbjct: 502 KIKSLKFATEAAITILRIDDLI 523
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 5e-73
Identities = 100/285 (35%), Positives = 156/285 (54%), Gaps = 10/285 (3%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
+ + +R+L+ E +L ++++I AG N++++QK I DL
Sbjct: 205 LEYEKTEKVIISTAEEL---ERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGI-----DDL 256
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRF 196
A+HFL K +L ++ +++ED+E + K ++SLD P+ L SA VEE G +
Sbjct: 257 ALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKT 316
Query: 197 VKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELS 256
I G + T+++RG+ LDE R++ DAL V+ +K ++ GGGA E+ELS
Sbjct: 317 TFIEGCLSGK-VATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELS 375
Query: 257 LKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGI 316
L +YA +VSG + AFA+ALEVIP TLAENAGL+PI + +L+ H +G GI
Sbjct: 376 RALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKGN-NLGI 434
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361
+ G I ++ E ++ PL V SA+ + E IL ID I+
Sbjct: 435 DADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKA 479
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 1e-72
Identities = 158/562 (28%), Positives = 275/562 (48%), Gaps = 73/562 (12%)
Query: 310 GETTTGINVRKG------AITNILEENV----VQPLLVSTSA---ITLSTETVRSILKID 356
GE T+G +VR A+ NI++ ++ + +LV IT T+ +L+++
Sbjct: 5 GERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 64
Query: 357 D----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKC 412
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ +HPT+I ++ A +
Sbjct: 65 HPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEA 124
Query: 413 VEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDT 469
V+ + E +S + +E LI A TS++SK++ + + I VDAVL K N +
Sbjct: 125 VKYIKENLSVSVDTLGKEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEI 184
Query: 470 NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM 529
+K + +++ G + ++ LV G A+ PKR++KAKI + F + K +
Sbjct: 185 KYPIKAVNILKAHGKSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKAKMAL 244
Query: 530 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589
++VV D + ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 245 GVQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTG-----GIDDMCLKYFVEA 299
Query: 590 KVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVK 643
+ V+ ++ED++ + K +++L + F +L AD V + + +
Sbjct: 300 GAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECIL 359
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
I G + + ++++RG+N +LDE RSLHDALCVV+ R L +
Sbjct: 360 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVK-----RTLESN----------- 402
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
+++ GGGA E LS+ L +A T+ + FA+AL +IP
Sbjct: 403 -----------------SVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIP 445
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETTT--------GINVRKGAITNILEENVVQPLLV 815
TLA NA + V +LR HA + G+++ G I + E V++P +
Sbjct: 446 KTLAVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVS 505
Query: 816 STSAITLSTETVRSILKIDDIV 837
++ +TE +IL+IDD++
Sbjct: 506 KVKSLKFATEAAITILRIDDLI 527
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 9e-71
Identities = 106/275 (38%), Positives = 166/275 (60%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D K+ ++ + L++E A + +V +I G NV+ QK I DLA H+L K
Sbjct: 246 DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGI-----DDLAQHYLAKA 300
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
+L V+ +++ D+E + + + + ++D PE L A+LVEE G+ + V + G +N
Sbjct: 301 GILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKN 360
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE R+L DAL VV ++ ++AGGGA EIEL+ +L +YA
Sbjct: 361 P-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYAR 419
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
+V G + AFA ALE IP TLAENAGL+PI T+ ELR H +G G++V G +
Sbjct: 420 SVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVV 479
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE+ V++PL V AI +TE IL+IDD++
Sbjct: 480 DMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVI 514
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 2e-69
Identities = 148/485 (30%), Positives = 240/485 (49%), Gaps = 87/485 (17%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE 418
++ELS+ QD E GDGTTSV+I+AG +L AE L +GIHPT I A++KA ++IL E
Sbjct: 75 MIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEE 134
Query: 419 MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVV--NPQRDTNVDLKD- 475
+S P+ + DR ++K + + +K VS+ + L+ +A+DAV V R +D+K
Sbjct: 135 ISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRY 194
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
KV + GG +ED+ ++DG++ + +V PK
Sbjct: 195 AKVEKIPGGEIEDSRVLDGVMLNK---DVTHPK--------------------------- 224
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNV-LLVQKSILRDAISDLAIHFLDKIKVLVV 594
M R ++ R +L+ C + LV I +SDLA H+L K + +
Sbjct: 225 -----MRRRIENPRIVLLD---------CPLEYLV---ITEKGVSDLAQHYLVKAGITAL 267
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRT 653
+ + + D + + + + + + A L E G+ F I+ ++P +
Sbjct: 268 RRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-KA 326
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+++RG++K VL+E R+L DA+ V R ++ P+
Sbjct: 327 CTILLRGASKDVLNEVERNLQDAMAVARNIILN---------PK---------------- 361
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
L+ GGGA E+ +S L++ A ++ G++ + ++A A ALEVIP TLA+N G N
Sbjct: 362 --------LVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGAN 413
Query: 774 PISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
I T+TELR +HAQGE +T GI+ G I ++ E + PL V + E +L+
Sbjct: 414 VIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLR 473
Query: 833 IDDIV 837
IDDIV
Sbjct: 474 IDDIV 478
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 9e-67
Identities = 150/496 (30%), Positives = 251/496 (50%), Gaps = 68/496 (13%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE 418
++ELS+ QD E GDGTTSV+I+AG +L AE L + IHPT I A++KA + +L E
Sbjct: 75 MIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEE 134
Query: 419 MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVV--NPQRDTNVDLKD- 475
+S P+ + D ++K + + +K VS+ + L+ +A+DAV V +D+K
Sbjct: 135 ISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRY 194
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPK---RVEKAKIGLIQFCISPPKTDMDHK 532
KV + GG +ED+ ++ G++ + +V PK +E +I L+ + K +
Sbjct: 195 AKVEKIPGGDIEDSCVLKGVMINK---DVTHPKMRRYIENPRIVLLDCPLEYKKGESQTN 251
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V + +R+L+ E Y+ + + I ++++ +K +SDLA H+L K +
Sbjct: 252 VEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEK-----GVSDLAQHYLLKANIS 306
Query: 593 VVKDIERED---IEFVC-KTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFV 642
++ + + D I C T+ R PE L +D L E G+ F
Sbjct: 307 AIRRVRKTDNNRIARACGATIVNR---------PEELRESDVGTGCGLFEVKKIGDEYFT 357
Query: 643 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702
+ ++P + T+++RG++K VL+E R+L DA+ V R ++ + L+ GGGA E+ +S+
Sbjct: 358 FFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSV 416
Query: 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVI 762
L K A + G+ + +RA+ A ALE+I
Sbjct: 417 YLAKKASKLEGVQQWPYRAV---------------------------------ADALEII 443
Query: 763 PLTLAENAGLNPISTVTELRNRHAQGET-TTGINVRKGAITNILEENVVQPLLVSTSAIT 821
P TLA+N G+N I T+TELR +HAQ T GI+ G I ++ E+ + +PL V
Sbjct: 444 PRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYK 503
Query: 822 LSTETVRSILKIDDIV 837
+ E+ +L+IDDIV
Sbjct: 504 TAIESACMLLRIDDIV 519
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 3e-66
Identities = 108/275 (39%), Positives = 163/275 (59%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + L +E A + +V +I AG NV++ QK I D+A H+L K
Sbjct: 249 DAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGI-----DDVAQHYLAKA 303
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
+L V+ +++ DIE + + R ++S+D L A LVEE G + V + G +N
Sbjct: 304 GILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDKMVFVEGCKN 363
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE RSL DAL VV ++ ++AGGGA EIE++L+L YA
Sbjct: 364 P-KAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYAR 422
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
+ G + AFA ALE IP LAENAGL+PI + ELR +H +G GINV G I
Sbjct: 423 KIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIE 482
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE V++PL V AI +TE IL+IDD++
Sbjct: 483 DMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 2e-63
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 15/293 (5%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCNVLLV-QKSILRDAIS 134
+ + ++V+S + + ++E + +V I + G NV++V I
Sbjct: 228 LEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI-----D 282
Query: 135 DLAIHFLDKIKVLVVKDIEREDI-EFVCKTLNTRPIASLDHFLPEHL--SSADLVEEIPA 191
DLA +L+ I +L + +++ED+ E + K + ++ L L +A LVEE
Sbjct: 283 DLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKT 342
Query: 192 GNSRFVKISGIQNP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 250
G+ K+ + G T++VRG+ ++ LDE R + DAL VVR V++ ++ GGGA
Sbjct: 343 GDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGA 402
Query: 251 PEIELSLKLTKYADTVSGID-AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 309
EIE +L+L +YA TV G D AFA+ALE P LAENAGL+PI +++LR+ HA
Sbjct: 403 AEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA- 461
Query: 310 GETTTGINVRKGAIT-NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361
T GI+ G +++E ++ PL V SA+ + E +L IDDI+
Sbjct: 462 -TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAA 513
|
Length = 524 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 220 bits (561), Expect = 9e-63
Identities = 151/484 (31%), Positives = 249/484 (51%), Gaps = 49/484 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV +SK QD E GDGTTSV ++A LL AEKL+++ IHP TI + ++ A ++ LT
Sbjct: 73 VLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALT 132
Query: 418 EMSTPIT---LADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + + RE+LI A T+L+SK++SQ A +AVDAVL++ + TN++
Sbjct: 133 KSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRL---KGSTNLE-- 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHKV 533
I++I+ LGG + D+ L +G + K VN PKR+E AKI + + K + +V
Sbjct: 188 AIQIIKILGGKLSDSFLDEGFIL-AKKIGVNQPKRIENAKILIANTTMDTDKVKIFGSRV 246
Query: 534 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593
V + + + K ER + V++I K G N I R I + ++
Sbjct: 247 RVDSTAKLAELEKAEREKMKEKVEKILKHGINCF-----INRQLIYNYPEQLFADAGIMS 301
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ + E +E + +++ DH L S DL+EEI G + +K SG++ G
Sbjct: 302 IEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVK-AGEA 360
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+V+RG+ + +LDEA RSLHDALCV+ VK+ + GGG E+ +S + A + G
Sbjct: 361 CTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDTEAQNIPG 420
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
K A V AFA+AL +P LA+NAG +
Sbjct: 421 -------------------------KKALAVE--------AFARALRQLPTILADNAGFD 447
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
V +LR H G +T G+++ +G I ++ + +V+ + + ++ ++E +L++
Sbjct: 448 SSELVAQLRAAHYNGNSTMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRV 507
Query: 834 DDIV 837
D+I+
Sbjct: 508 DNII 511
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 5e-56
Identities = 103/278 (37%), Positives = 157/278 (56%), Gaps = 9/278 (3%)
Query: 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145
HK+ ++ ++ + E+ Y +V+Q+K AG N+++ Q D A H L +
Sbjct: 255 HKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQW-----GFDDEANHLLLQNG 309
Query: 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQ 203
+ V+ + +IE + R + + PE L A LV EI G + + I G
Sbjct: 310 LPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP 369
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +T+ +RG NK++++EA RSLHDALCVVR L++ ++ GGGA EI SL + K A
Sbjct: 370 N-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAA 428
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-AQGETTTGINVRKGA 322
D SGI+ Y RAFA ALE IPL LAEN+GLNPI T++E++ R + GI+
Sbjct: 429 DKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRG 488
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
++ E+ V + L+ I L+T+ V+ ILKIDD++V
Sbjct: 489 TNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 7e-56
Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 50/258 (19%)
Query: 428 RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVE 487
RE L++ A TSLNSK+ S L + VDAVLKV R DL IKV + GG++E
Sbjct: 1 RELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRM--DDLGVIKVEKIPGGSLE 57
Query: 488 DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547
D+ELV G+VF + A+ PKR+E AKI L+ +
Sbjct: 58 DSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY----------------------- 94
Query: 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607
V++ +K I DLA+H+L K ++ V+ +++ED+E + +
Sbjct: 95 ------------------VVIAEKGI-----DDLALHYLAKAGIMAVRRVKKEDLERIAR 131
Query: 608 TLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLD 667
++SL+ PE L +A+LVEE G + I G + T+++RG+ ++ LD
Sbjct: 132 ATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGK-AATILLRGATEVELD 190
Query: 668 EAARSLHDALCVVRCLVK 685
E RSLHDALC VR V+
Sbjct: 191 EVKRSLHDALCAVRAAVE 208
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 8e-52
Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 18/265 (6%)
Query: 109 NIVKQIKKA-----------GCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
VK++KKA G NV++ S+ DLA+H+ +K ++V+K + ++
Sbjct: 211 GSVKRVKKAKVAVFSCPFDIGVNVIVAGGSV-----GDLALHYCNKYGIMVIKINSKFEL 265
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 217
+C+T+ P+ L PE + D V G+++ V + + T+V+RG+
Sbjct: 266 RRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGAT 325
Query: 218 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 277
+ +LD+ R++ D + V + L K + G GA EIEL+ KL +Y + G++ Y + F
Sbjct: 326 QNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKF 385
Query: 278 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPL 335
A+A EV+P TLAENAGL+ ++EL H +G + G+++ G + E + L
Sbjct: 386 AEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHL 445
Query: 336 LVSTSAITLSTETVRSILKIDDILV 360
AI L+TE ++L++D I++
Sbjct: 446 ATKKWAIKLATEAAVTVLRVDQIIM 470
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-51
Identities = 96/303 (31%), Positives = 156/303 (51%), Gaps = 25/303 (8%)
Query: 60 EVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGC 119
+ T T+L IH A ++++ YS K E I ++K I +G
Sbjct: 239 DTATTETKGTVL-----IHNAEELLN-------YS------KGEENQIEAMIKAIADSGV 280
Query: 120 NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH 179
NV++ S+ D+A+H+L++ ++V+K + ++ +CKT+ P+ L PE
Sbjct: 281 NVIVTGGSV-----GDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEE 335
Query: 180 LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 239
L D V G + R T+++RGS K +LD+ R++ D + VV+ LV
Sbjct: 336 LGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALV 395
Query: 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299
K + G GA EIEL+ +LTKYA+ G+D Y + FA+A E+IP TLAENAGLNP
Sbjct: 396 KDGRFLPGAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEV 455
Query: 300 VTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 357
+ +L H +G T+ GI++ + + E + L AI L+TE ++L++D
Sbjct: 456 IPKLYAAHKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQ 515
Query: 358 ILV 360
I++
Sbjct: 516 IIM 518
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 5e-51
Identities = 131/475 (27%), Positives = 223/475 (46%), Gaps = 73/475 (15%)
Query: 365 AQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPI- 423
AQD GDGTTS V++ G LL+ AE+ + +G+HP I++ F+ A K ++ L P+
Sbjct: 77 AQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVE 136
Query: 424 TLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483
DRE L+ A TSL +K+ + A L I VDAVL + P D +DL +++++
Sbjct: 137 IDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP--DEPIDLHMVEIMQMQH 194
Query: 484 GTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDR 543
+ DT+L+ GLV + + + PKRVE A I + KT+++ YS
Sbjct: 195 KSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFF---YS---- 247
Query: 544 VLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAIS-DLAIHFLDKIKVLVVKDIEREDI 602
V++ QK I D S D+ L K +L ++ +R ++
Sbjct: 248 ----------------------VVINQKGI--DPPSLDM----LAKEGILALRRAKRRNM 279
Query: 603 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662
E + + S+D PE L A LV E G ++ I G++NP ++ T++++G N
Sbjct: 280 ERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPN 338
Query: 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAL 722
+ + ++ D L V+ ++ + ++ G GA E+ L L ++ +V G +A
Sbjct: 339 DHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKG------KAK 392
Query: 723 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782
+ G+ AFA AL VIP TLAEN+GL+ T+ +L+
Sbjct: 393 L----------------------GVQ-----AFADALLVIPKTLAENSGLDVQETLVKLQ 425
Query: 783 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +A+G G+++ G + E + V + +T +L +D+I+
Sbjct: 426 DEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEII 480
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-46
Identities = 94/277 (33%), Positives = 153/277 (55%), Gaps = 9/277 (3%)
Query: 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145
HK+ +S ++ K E+ ++ IKK+G N+++ Q D A H L +
Sbjct: 259 HKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQW-----GFDDEANHLLLQND 313
Query: 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQ 203
+ V+ + +++E + R + + L A LV EI G R + I +
Sbjct: 314 LPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCK 373
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +T+ +RG NK++++EA RS+HDALCVVR L+K ++ GGGA EI SL +++ A
Sbjct: 374 N-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEA 432
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-AQGETTTGINVRKGA 322
D SG++ Y RAFA ALE IP+ LAEN+GL+PI T++ L++ + G++
Sbjct: 433 DKYSGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYG 492
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E+ V + L+ I L+T+ VR ILKIDD++
Sbjct: 493 TNDMKEQFVFETLIGKKQQILLATQLVRMILKIDDVI 529
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-45
Identities = 132/484 (27%), Positives = 228/484 (47%), Gaps = 52/484 (10%)
Query: 365 AQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT 424
AQD GDGTTS VI+ G LL+ AE+ + +G+HP I++ F+ A + +E L +
Sbjct: 81 AQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTE 140
Query: 425 LA-DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483
DRE L+ A TSL +K+ A L I VDAVL + D ++ + +I ++
Sbjct: 141 DEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIMEMKHKS 200
Query: 484 GTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDR 543
T DT L+ GLV + + + P+RV+ A I + KT+++ S ++
Sbjct: 201 AT--DTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSSAEQREK 258
Query: 544 VLKEERAYILNIVKQI---KKAGCN-------VLLVQKSILRDAISDLAIHFLDKIKVLV 593
++ ER ++ + VK+I KK C V++ QK I D S + L K +L
Sbjct: 259 LVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI--DPPS---LDLLAKEGILA 313
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ +R ++E + + S++ PE L A LV E G ++ I ++NP ++
Sbjct: 314 LRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNP-KS 372
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T++++G N + + ++ D L V+ ++ + ++ G GA EI L + +V G
Sbjct: 373 CTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSVKG 432
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
+A KL G++ AFA AL VIP TLAEN+G +
Sbjct: 433 ------KA--------------KL--------GVE-----AFANALLVIPKTLAENSGFD 459
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
T+ +L + H +G G+++ G + + + V I +T +L +
Sbjct: 460 AQDTLVKLEDEHDEGGEVVGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519
Query: 834 DDIV 837
D+++
Sbjct: 520 DEVM 523
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-43
Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 7/270 (2%)
Query: 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 147
V V D ++ E I + +++I K+G NV+L + I DLA + +
Sbjct: 251 VRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPI-----GDLATQYFADRDIF 305
Query: 148 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 207
+ ED++ V + ++ + + L + L EE G R+ +G +
Sbjct: 306 CAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-AK 364
Query: 208 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 267
T T+++RG + ++EA RSLHDA+ +VR +K +++AGGGA E+ELS L Y+ T++
Sbjct: 365 TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIA 424
Query: 268 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT-TGINVRKGAITNI 326
G AFA+ALE+IP L +NAG + + +LR +HAQG G+++ I +
Sbjct: 425 GKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADN 484
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKID 356
E V +P LV +A+T +TE IL +D
Sbjct: 485 FEAFVWEPSLVKINALTAATEAACLILSVD 514
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 4e-43
Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 6/273 (2%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
KV V + + + + E+ + N V++I K G N I R I + +
Sbjct: 245 KVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCF-----INRQLIYNYPEQLFADAGI 299
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
+ ++ + + +E + ++ DH L + L+EEI G + ++ SG+ G
Sbjct: 300 MAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-G 358
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
T+V+RG+++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + + A
Sbjct: 359 EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKT 418
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G + AFA+AL +P +A+NAG + V +LR H G TT G+++RKG + ++
Sbjct: 419 PGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDM 478
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
E + + V + ++E IL++DDI+
Sbjct: 479 KELGITESFKVKRQVLLSASEAAEMILRVDDII 511
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 9e-43
Identities = 83/263 (31%), Positives = 140/263 (53%), Gaps = 6/263 (2%)
Query: 98 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
++ E A I +++I ++G N++L + I DLA + + + ED+
Sbjct: 263 AIVDAEWAIIFEKLRKIVESGANIVLSKLPI-----GDLATQYFADHNIFCAGRVSAEDM 317
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 217
+ V K ++ + L + L EE G+ R+ +G + +T T+++RG
Sbjct: 318 KRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFTGCPH-AKTCTIILRGGA 376
Query: 218 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 277
+ ++EA RSLHDA+ +VR +K + ++AGGGA E+ELS L Y+ T+ G AF
Sbjct: 377 EQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKTIDGKQQLIINAF 436
Query: 278 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLV 337
A+ALEVIP L ENAG + I + +LR+ HA+G G+++ I + E V +P LV
Sbjct: 437 AKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTEDIGDNFENFVWEPALV 496
Query: 338 STSAITLSTETVRSILKIDDILV 360
+A+ +TE +IL +D+ +
Sbjct: 497 KINALKAATEAACTILSVDETIT 519
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-42
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 6/273 (2%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
KV V + + E+ + N V +I GCNV I R I + + +
Sbjct: 257 KVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVF-----INRQLIYNYPEQLFAEAGI 311
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
+ ++ + + +E + L +++ D L DL+EEI G + ++ SG G
Sbjct: 312 MAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-G 370
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
T+V+RG++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + + A V
Sbjct: 371 EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKV 430
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G + AFA+AL IP +A+N G + V++LR H +G T GI++ KG + ++
Sbjct: 431 EGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDM 490
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
E + + V S + +TE IL++DDI+
Sbjct: 491 KELGITESYKVKLSQLCSATEAAEMILRVDDII 523
|
Length = 533 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 8e-39
Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 133 ISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPA 191
+SDLA H+L K + ++ + + D + + + + + + A L E
Sbjct: 251 VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKI 310
Query: 192 GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 251
G+ F I+ ++P + T+++RG++K VL+E R+L DA+ V R ++ L+ GGGA
Sbjct: 311 GDEYFTFITECKDP-KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGAT 369
Query: 252 EIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE 311
E+ +S L++ A ++ G++ + ++A A ALEVIP TLA+N G N I T+TELR +HAQGE
Sbjct: 370 EMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGE 429
Query: 312 -TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+T GI+ G I ++ E + PL V + E +L+IDDI+
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 9e-39
Identities = 91/288 (31%), Positives = 153/288 (53%), Gaps = 26/288 (9%)
Query: 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 147
V + +R+L+ E Y+ + + I ++++ +K +SDLA H+L K +
Sbjct: 252 VEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEK-----GVSDLAQHYLLKANIS 306
Query: 148 VVKDIERED---IEFVC-KTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFV 197
++ + + D I C T+ RP E L +D L E G+ F
Sbjct: 307 AIRRVRKTDNNRIARACGATIVNRP---------EELRESDVGTGCGLFEVKKIGDEYFT 357
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
+ ++P + T+++RG++K VL+E R+L DA+ V R ++ + L+ GGGA E+ +S+
Sbjct: 358 FFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSV 416
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET-TTGI 316
L K A + G+ + +RA A ALE+IP TLA+N G+N I T+TELR +HAQ T GI
Sbjct: 417 YLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364
+ G I ++ E+ + +PL V + E+ +L+IDDI+ + K
Sbjct: 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-35
Identities = 83/285 (29%), Positives = 148/285 (51%), Gaps = 20/285 (7%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
+VVV+D ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 243 QVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTG-----GIDDMCLKYFVEAGA 297
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKIS 200
+ V+ +++ED+ + K +++L + F P +L A+ V + G+ + I
Sbjct: 298 MAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIK 357
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G + + ++++RG+N +LDE RSLHDALCVV+ ++ +++ GGGA E LS+ L
Sbjct: 358 GTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE 416
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT------- 313
+A T+ + FA+AL VIP TLA NA + V +LR HA +
Sbjct: 417 NFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLK 476
Query: 314 -TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 357
G+++ G + + LE V++P + ++ +TE +IL+IDD
Sbjct: 477 WYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDD 521
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-34
Identities = 82/278 (29%), Positives = 144/278 (51%), Gaps = 6/278 (2%)
Query: 82 KMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 141
K+ +V V + + + K ER + V++I K G N I R I +
Sbjct: 240 KIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCF-----INRQLIYNYPEQLF 294
Query: 142 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 201
++ ++ + E +E + +++ DH L S DL+EEI G + +K SG
Sbjct: 295 ADAGIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSG 354
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
++ G T+V+RG+ + +LDEA RSLHDALCV+ VK+ + GGG E+ +S +
Sbjct: 355 VK-AGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDT 413
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
A + G A AFA+AL +P LA+NAG + V +LR H G +T G+++ +G
Sbjct: 414 EAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGNSTMGLDMNEG 473
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I ++ + +V+ + + ++ ++E +L++D+I+
Sbjct: 474 TIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 511
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 9e-34
Identities = 83/294 (28%), Positives = 151/294 (51%), Gaps = 21/294 (7%)
Query: 81 AKM-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIH 139
AKM + ++VV D + ++++ + E +K+I AG NV+L I D+ +
Sbjct: 240 AKMALGVQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTG-----GIDDMCLK 294
Query: 140 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGN 193
+ + + V+ ++ED++ + K +++L + F +L AD V + +
Sbjct: 295 YFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIAD 354
Query: 194 SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 253
+ I G + + ++++RG+N +LDE RSLHDALCVV+ ++ +++ GGGA E
Sbjct: 355 DECILIKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEA 413
Query: 254 ELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313
LS+ L +A T+ + FA+AL +IP TLA NA + V +LR HA +
Sbjct: 414 ALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAYHAAAQLK 473
Query: 314 T--------GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G I + E V++P + ++ +TE +IL+IDD++
Sbjct: 474 PEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLI 527
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 9e-32
Identities = 53/67 (79%), Positives = 57/67 (85%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
DK K D+R SNI AAKAVADAIRTSLGPRGMDKMIQ GEV ITNDGATILKQM+V+
Sbjct: 1 TDKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVL 60
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 61 HPAAKML 67
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 95 AMDRVLKEERAYILNIVKQIKKAG-----------------------------CNVLLVQ 125
A+ +V + R L ++K K G +LL+
Sbjct: 30 AVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLD 89
Query: 126 KS-----ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180
I I DLA+H+L K ++ V+ +++ED+E + + ++SL+ PE L
Sbjct: 90 CPLEYVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDL 149
Query: 181 SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK 240
+A+LVEE G + I G + T+++RG+ ++ LDE RSLHDALC VR V+
Sbjct: 150 GTAELVEETKIGEEKLTFIEGCKGGK-AATILLRGATEVELDEVKRSLHDALCAVRAAVE 208
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-30
Identities = 53/68 (77%), Positives = 58/68 (85%)
Query: 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
F+DK K D+R SNI AAKAVADAIRTSLGP+GMDKMIQ GEV ITNDGATILKQM V
Sbjct: 1 FQDKDKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAV 60
Query: 77 IHPAAKMM 84
+HPAAKM+
Sbjct: 61 LHPAAKML 68
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-26
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 51/230 (22%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K++ + R SNI AAKA+ADA++T+LGP+GMDKM+ S G+ TITNDGATILK++ V
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 78 HPAAKMMDHKVVVSDYSAMDR----------VLKEERAYILNIVKQIKKAGCNVLLVQK- 126
HPAAK++ V V+ + D VL E ++K+ +K L+
Sbjct: 61 HPAAKLL---VEVA--KSQDDEVGDGTTTVVVLAGE------LLKEAEK------LLAAG 103
Query: 127 ---SILRDAI---SDLAIHFLDKIKVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEH 179
+ + + A+ L +I V + + +RE++ V T LN++ ++ D FL E
Sbjct: 104 IHPTEIIRGYEKAVEKALEILKEIAVPIDVE-DREELLKVATTSLNSKLVSGGDDFLGEL 162
Query: 180 LSSA-----DLVEEIPAGNSRFVKISGIQNPGRTL--TVVVRGSNKLVLD 222
+ A ++ G R K G +L + +V G +V D
Sbjct: 163 VVDAVLKVGKENGDVDLGVIRVEKK-----KGGSLEDSELVVG---MVFD 204
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 8/241 (3%)
Query: 120 NVLLVQKSILRDAIS-DLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPE 178
+V++ QK I D S D+ L K +L ++ +R ++E + + S+D PE
Sbjct: 247 SVVINQKGI--DPPSLDM----LAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPE 300
Query: 179 HLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238
L A LV E G ++ I G++NP ++ T++++G N + + ++ D L V+
Sbjct: 301 CLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAVKNA 359
Query: 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 298
++ + ++ G GA E+ L L ++ +V G +AFA AL VIP TLAEN+GL+
Sbjct: 360 IEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQE 419
Query: 299 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
T+ +L++ +A+G G+++ G + E + V + +T +L +D+I
Sbjct: 420 TLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEI 479
Query: 359 L 359
+
Sbjct: 480 I 480
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 41/60 (68%), Positives = 52/60 (86%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI AAKAVA+A+RT+LGP+GMDKM+ S G+VTITNDGATILK+M++ HPAAKM+
Sbjct: 15 DAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKML 74
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 16/273 (5%)
Query: 97 DRVLKEERAYILNIVKQI---KKAGCN-------VLLVQKSILRDAISDLAIHFLDKIKV 146
++++ ER ++ + VK+I KK C V++ QK I D S + L K +
Sbjct: 257 EKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI--DPPS---LDLLAKEGI 311
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
L ++ +R ++E + + S++ PE L A LV E G ++ I ++NP
Sbjct: 312 LALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNP- 370
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
++ T++++G N + + ++ D L V+ ++ + ++ G GA EI L + +V
Sbjct: 371 KSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSV 430
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G AFA AL VIP TLAEN+G + T+ +L + H +G G+++ G +
Sbjct: 431 KGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEPIDP 490
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ + V I +T +L +D+++
Sbjct: 491 EIKGIWDNYRVKKQLIQSATVIASQLLLVDEVM 523
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 37/67 (55%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + K + S+I AAK+VA+ +RTSLGPRGMDK++ + +GEVT+TNDGATIL++M+V
Sbjct: 16 KKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVD 75
Query: 78 HPAAKMM 84
H AK++
Sbjct: 76 HQIAKLL 82
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 3e-21
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI A +A+ADA+RT+LGPRGMDK+I G+VTI+NDGATILK ++++HPAAK +
Sbjct: 20 SNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTL 75
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-21
Identities = 41/67 (61%), Positives = 56/67 (83%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++K D + +NI AAKAVA+A++++LGPRGMDKM+ S G+VTITNDGATILK+M++
Sbjct: 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIE 68
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 69 HPAAKML 75
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-20
Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K++ D R SNI AA+A+ADA++T+LGP+G +KM+ S G++TITNDG TILK++ +
Sbjct: 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELE 63
Query: 78 HPAAKMM 84
HP AK++
Sbjct: 64 HPGAKLL 70
|
Length = 524 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-19
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + K + + SNI AAK+VA +RTSLGP+GMDKM+ + +G++T+TNDGATIL QM+V
Sbjct: 20 KKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVD 79
Query: 78 HPAAKMM 84
+P AK+M
Sbjct: 80 NPIAKLM 86
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-18
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+++ D+R N+ A AVA+ ++TSLGP G+DKM+ G+VTITNDGATILK + V H
Sbjct: 6 ERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 65
Query: 79 PAAKMM 84
PAAK++
Sbjct: 66 PAAKIL 71
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D+R N+ AA A+A+ +++SLGP G+DKM+ G+VTITNDGATILK + V HPAAK++
Sbjct: 8 DVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKIL 67
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-17
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM---- 84
SNI A A+A+A++T+LGPRGMDK+I SNG+ T++NDGATILK ++++HPAAK +
Sbjct: 22 SNINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAKTLVDIA 81
Query: 85 -DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V D + +L E +L K + G + L+ + R+A+S LAI + +
Sbjct: 82 KSQDSEVGDGTTSVVILAGE---LLKEAKPFIEEGVHPQLIIRG-YREALS-LAIEKIKE 136
Query: 144 IKVLV--VKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
I V + K +RE +E T L+++ IA F + + A L + + + + +
Sbjct: 137 IAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLDLKLIGVK 196
Query: 201 GIQNPGRTLTVVVRG 215
+Q +V+V G
Sbjct: 197 KVQGGALEDSVLVNG 211
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 27/48 (56%), Positives = 41/48 (85%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ADA++T+LGP+G +KM+ G++TITNDGATILK++ + HPAAK++
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLL 48
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 26 IRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ NI AAK VAD IRT LGPR M KM+ G + +TNDG IL++++V HPAAK M
Sbjct: 17 AQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSM 75
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
| >gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 47/218 (21%), Positives = 100/218 (45%), Gaps = 33/218 (15%)
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+K+ + GG+ D+E+VDG+VFT+ A+ P +++ +I L+Q + +++ V
Sbjct: 50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL-------EYQRVE 102
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ ++D V+ +E+ Y+ N+V +I +V+LV+KS +S +A L + + +V
Sbjct: 103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKS-----VSRIAQDLLLEAGITLVL 157
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFL-PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+++ +E + + I+S+D L L + + R +TL
Sbjct: 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESF--------RVRTYVEEHGRSKTL 209
Query: 655 ------------TVVVRGSNKLVLDEAARSLHDALCVV 680
T+++RG + L + R + +
Sbjct: 210 MFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAA 247
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 34/56 (60%), Positives = 42/56 (75%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI AAKAVAD IRT+LGPR M KM+ G + +TNDG IL++++V HPAAK M
Sbjct: 20 SNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSM 75
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-13
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN--GEVTITNDGATILKQMNV 76
+ K R S+ A A+ D ++T+LGP+GMDK++Q+ G VT+TNDGATILK + V
Sbjct: 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGV 66
Query: 77 IHPAAKMM 84
+PAAK++
Sbjct: 67 DNPAAKVL 74
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 21 SKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN-----GEVTITNDGATILKQMN 75
K R + A AVAD ++T+LGP+GMDK++Q + G VT+TNDGATILK +
Sbjct: 18 EKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVW 77
Query: 76 VIHPAAKMM 84
+ +PAAK++
Sbjct: 78 LDNPAAKIL 86
|
Length = 533 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
NI A K ++ RTS GP GM+KM+ ++ +T+D ATIL+++ V HPAAK+
Sbjct: 12 RNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKL 66
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 7e-12
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVV 89
NI AA+ + D ++T+LGP+G KM+ + G++ +T DG +L +M + HP A M+
Sbjct: 21 NINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAA- 79
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLL--VQKSILRDAIS---DLAIHFLDKI 144
+A D + + + ++ ++ K +L V I+ + + FLDK
Sbjct: 80 ----TAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKF 135
Query: 145 KVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSADLVEEIP--AGNSRFVKISG 201
KV +++RE + V +T L T+ L L E + A L + + V+I
Sbjct: 136 KVKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIME 195
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAAR 226
+++ T T ++RG LVLD AR
Sbjct: 196 MKHKSATDTTLIRG---LVLDHGAR 217
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVV 89
NI AAK + D ++T+LGP+G KM+ + G++ +T DG +L +M + HP A M+
Sbjct: 17 NISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAA- 75
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLL--VQKSILRDAIS---DLAIHFLDKI 144
+A D + + + ++ ++ K + V I+ + + A+ FL+
Sbjct: 76 ----TAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESF 131
Query: 145 KVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSA--DLVEEIPAGNSRF----V 197
KV V D +RE + V +T L T L L + L+ D V I + V
Sbjct: 132 KVPVEIDTDRELLLSVARTSLRT----KLHADLADQLTEIVVDAVLAIYKPDEPIDLHMV 187
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAAR 226
+I +Q+ + T ++RG LVLD AR
Sbjct: 188 EIMQMQHKSDSDTKLIRG---LVLDHGAR 213
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
NI A K ++ RTSLGP GM+KM+ ++ +TND ATIL+++ V HPAAK++
Sbjct: 23 NIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLL 77
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN-GEVTITNDGATILKQMNVI 77
+ +A + R S+ A AV D ++++LGP+GMDK++Q+++ + +TNDGATILK + +
Sbjct: 8 TEERAENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLD 67
Query: 78 HPAAKMMDHKVVVSDYSAMD 97
+PAAK++ + V D D
Sbjct: 68 NPAAKVLVNISKVQDDEVGD 87
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 106/497 (21%), Positives = 193/497 (38%), Gaps = 97/497 (19%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D AGDGTT+ I+A ++ K + G++P + A +E L E S P
Sbjct: 90 SKTNDK-AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRP 148
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +E+++ A S N V + + DA+ KV +D + ++D
Sbjct: 149 VK--TKEDILNVATISANGDVE------IGSLIADAMDKV---GKDGTITVED------- 190
Query: 483 GGTVEDT-ELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDY--S 539
G T+ED E+V+G+ F + + P V K ++ + ++V+D S
Sbjct: 191 GKTLEDELEVVEGMSFDRGYIS---PYFVTNEKTQKVEL--------ENPLILVTDKKIS 239
Query: 540 AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI-HFLDKIKVLVVK--- 595
++ +L IL + K+ +L++ + + +A+ L I +KV VK
Sbjct: 240 SIQSILP-----ILEHAVKNKR---PLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPG 291
Query: 596 --DIEREDIEFVCKTLNTRPI------ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 647
D ++ ++ + + LD F P L SA K+
Sbjct: 292 FGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSA-------------KKV--T 336
Query: 648 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCV-----VRCLVKQR--------ALIAGGG 694
T+ + G + E L + + +K+R A+I GG
Sbjct: 337 VTKDETVILTGGGDKAEI-KERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGG 395
Query: 695 APEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTK-------YADTVSGI 747
A E+E++ K + D ++ A ++ GGG + S L K D +G+
Sbjct: 396 ASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGV 455
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
AL + +AENAG+ V ++ + + + G + + G N+ E
Sbjct: 456 K-----IVRNALRLPTKQIAENAGVEGAVVVEKILEK---KDPSFGYDAQTGEYVNMFEA 507
Query: 808 NVVQPLLVSTSAITLST 824
++ P V SA+ +
Sbjct: 508 GIIDPTKVVRSALVDAA 524
|
Length = 555 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D AGDGTT+ ++A ++++ K + G +P + +KA VE L ++S P
Sbjct: 76 SKTND-VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKP 134
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +E + + A S N + L+A +A+ KV +D + +++
Sbjct: 135 VK--TKEEIAQVATISANGDE--EIGELIA----EAMEKV---GKDGVITVEE------- 176
Query: 483 GGTVEDT-ELVDGLVF 497
G T+E E+V+G+ F
Sbjct: 177 GKTLETELEVVEGMQF 192
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 4 NASGDSKNSKSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTI 63
N S + K+ + R S + + +ADA+ +LGP+G + +I+ G I
Sbjct: 1 NRSKMFSSRYRFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKI 60
Query: 64 TNDGATILK 72
T DG T+ K
Sbjct: 61 TKDGVTVAK 69
|
Length = 555 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-04
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLT-L 288
DAL R V++ ++ GGG + + L + A A +ALE PL +
Sbjct: 397 DALNATRAAVEE-GIVPGGGVALLRAAKALDELAGLNGDQAAGV-EIVRRALEA-PLRQI 453
Query: 289 AENAGLNP---ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 345
AENAGL+ ++ V EL + G N G +++ ++ P+ V+ SA+ +
Sbjct: 454 AENAGLDGSVVVAKVLELEDGF-------GFNAATGEYGDLIAAGIIDPVKVTRSALQNA 506
Query: 346 TETVRSILKIDDILVELSKAQDIEAGDG 373
+L + ++ + + +D G G
Sbjct: 507 ASVAGLLLTTEALVADKPEEEDPPGGMG 534
|
Length = 542 |
| >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 34 AKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
+ADA++ +LGP+G + +I S G TITNDG TI K++ + M
Sbjct: 20 VNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENM 69
|
Length = 541 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +I S G TIT DG +I K
Sbjct: 21 KLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAK 57
|
Length = 542 |
| >gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 33/184 (17%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 71 LKQMNVIHPAAKMM------DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLV 124
K+M +++ +++ V + ++D V+ +E+ Y+ N+V +I +V+LV
Sbjct: 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV 136
Query: 125 QKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFL-PEHLSSA 183
+KS +S +A L + + +V +++ +E + + I+S+D L L +
Sbjct: 137 EKS-----VSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTC 191
Query: 184 DLVEEIPAGNSRFVKISGIQNPGRTL------------TVVVRGSNKLVLDEAARSLHDA 231
+ R +TL T+++RG + L + R +
Sbjct: 192 ESF--------RVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFM 243
Query: 232 LCVV 235
+
Sbjct: 244 VFAA 247
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-04
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E+EL + + D ++ A ++ GGG + + L + A
Sbjct: 376 AVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQ 435
Query: 748 DAYCFRAFAQALEVIPLT-LAENAGLNP---ISTVTELRNRHAQGETTTGINVRKGAITN 803
A +ALE PL +AENAGL+ ++ V EL + G N G +
Sbjct: 436 AAGV-EIVRRALEA-PLRQIAENAGLDGSVVVAKVLELEDGF-------GFNAATGEYGD 486
Query: 804 ILEENVVQPLLVSTSA 819
++ ++ P+ V+ SA
Sbjct: 487 LIAAGIIDPVKVTRSA 502
|
Length = 542 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 34 AKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +I+ S G IT DG T+ K
Sbjct: 17 VNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAK 55
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 35 KAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
+ADA++ +LGP+G + +++ S G TIT DG T+ K++ + M
Sbjct: 19 DKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENM 67
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A ++++ K + G +P + +KA VE L ++S P
Sbjct: 77 SKTNDV-AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKKLSKP 135
Query: 423 ITLADRENLIKSAATSLNS 441
+ ++ + + A S N+
Sbjct: 136 VK--GKKEIAQVATISANN 152
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 24 TDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
TD R+ + +A+A++ +LGP+G + +++ S G IT DG T+ K++ + M
Sbjct: 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENM 69
|
Length = 544 |
| >gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
A KD + D R+ + +A+A++ +LGP+G + +I+ S G IT DG T+ K++
Sbjct: 2 AAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI 60
|
Length = 545 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| KOG0358|consensus | 534 | 100.0 | ||
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| KOG0361|consensus | 543 | 100.0 | ||
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| KOG0363|consensus | 527 | 100.0 | ||
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| KOG0362|consensus | 537 | 100.0 | ||
| KOG0364|consensus | 527 | 100.0 | ||
| KOG0361|consensus | 543 | 100.0 | ||
| KOG0360|consensus | 545 | 100.0 | ||
| KOG0359|consensus | 520 | 100.0 | ||
| KOG0363|consensus | 527 | 100.0 | ||
| KOG0362|consensus | 537 | 100.0 | ||
| KOG0357|consensus | 400 | 100.0 | ||
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| KOG0360|consensus | 545 | 100.0 | ||
| KOG0358|consensus | 534 | 100.0 | ||
| KOG0364|consensus | 527 | 100.0 | ||
| KOG0357|consensus | 400 | 100.0 | ||
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| KOG0356|consensus | 550 | 100.0 | ||
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| KOG0359|consensus | 520 | 100.0 | ||
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 100.0 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 100.0 | |
| KOG0356|consensus | 550 | 99.98 | ||
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.92 | |
| KOG0230|consensus | 1598 | 99.85 | ||
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.77 | |
| KOG0230|consensus | 1598 | 99.56 |
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-94 Score=837.12 Aligned_cols=453 Identities=70% Similarity=1.072 Sum_probs=433.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++..+.+.|.+
T Consensus 63 P~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ 142 (517)
T TIGR02342 63 PAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIK 142 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHH
Confidence 44555788899999999999999999999999999999999999999999999999999999999999987768889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCC-CCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSAN-VNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~-~~m~~~~~n 512 (841)
+|+|++++|+.+.+.++|++++++|+..++++..++.+|+++|+|++..||+.++|++++|++|++++.+ .+||++++|
T Consensus 143 va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n 222 (517)
T TIGR02342 143 SATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEK 222 (517)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccC
Confidence 9999999999999999999999999999986444567999999999999999999999999999999943 589999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+||++++++|++++++++.++.++++++++.++++|+++++++++++++.|++||+|+++|+++++++++++||.++||+
T Consensus 223 ~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~ 302 (517)
T TIGR02342 223 AKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIM 302 (517)
T ss_pred CcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++++.+|++|++++.+++.+||+|||+|+.+++|++|+
T Consensus 303 av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~ 382 (517)
T TIGR02342 303 VVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERS 382 (517)
T ss_pred EEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||+++++++++++++|||||++|++++.+|+ +++++.++.+|+++
T Consensus 383 i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i 429 (517)
T TIGR02342 383 LHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLS---------------------------------KLARTMKGVESYCV 429 (517)
T ss_pred HHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHH---------------------------------HHHhcCCcHHHHHH
Confidence 999999999999999999999999999999999 67677788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 430 ~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~ 509 (517)
T TIGR02342 430 RAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILK 509 (517)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q psy8873 833 IDDIVNT 839 (841)
Q Consensus 833 iD~iI~~ 839 (841)
||+||++
T Consensus 510 iD~ii~~ 516 (517)
T TIGR02342 510 IDDIVFT 516 (517)
T ss_pred ccceeec
Confidence 9999875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-93 Score=826.58 Aligned_cols=443 Identities=42% Similarity=0.672 Sum_probs=423.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++..+++.|.++|+|
T Consensus 74 ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~t 153 (519)
T TIGR02339 74 MLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAET 153 (519)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999876678899999999
Q ss_pred hccCcch-hhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVV-SQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~-~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
+++||+. +.|.++|++++++|+.++++..+++ .||+++|+|++++||+++||++++|++|++++.+.+||+.++|||
T Consensus 154 sl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~k 233 (519)
T TIGR02339 154 SLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAK 233 (519)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCc
Confidence 9999998 7999999999999999997522123 588899999999999999999999999999994448999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++||+++++++.++.++++++++++.++|+++++.++++|++.|++||+++++| ++.++++|.++||+++
T Consensus 234 Illl~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~gI~~v 308 (519)
T TIGR02339 234 IALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGI-----DDLAQHYLAKAGILAV 308 (519)
T ss_pred EEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCc-----cHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLH 674 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~ 674 (841)
+++++++|+|||++|||++++++++++++++|+|++|+++++|+++|++|++|..+ ..|||+|||+|+.+++|.+|+++
T Consensus 309 ~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~~r~i~ 387 (519)
T TIGR02339 309 RRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-KAVTILLRGGTEHVVDELERSIQ 387 (519)
T ss_pred ecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 89999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHH
Q psy8873 675 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRA 754 (841)
Q Consensus 675 dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 754 (841)
||++++++++++|+||||||++|++|+.+|+ +++++.++++++++++
T Consensus 388 DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~~~~ 434 (519)
T TIGR02339 388 DALHVVASALEDGKVVAGGGAVEIELALRLR---------------------------------SYARKIGGREQLAIEA 434 (519)
T ss_pred HHHHHHHHHhcCCCEeeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999998 6666778899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchh
Q psy8873 755 FAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834 (841)
Q Consensus 755 ~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD 834 (841)
|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||
T Consensus 435 ~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id 514 (519)
T TIGR02339 435 FADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRID 514 (519)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999998777789999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy8873 835 DIVNT 839 (841)
Q Consensus 835 ~iI~~ 839 (841)
++|++
T Consensus 515 ~ii~~ 519 (519)
T TIGR02339 515 DVIAA 519 (519)
T ss_pred HHhhC
Confidence 99874
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-92 Score=820.84 Aligned_cols=454 Identities=73% Similarity=1.115 Sum_probs=430.2
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
||+.+++++++++|+.++||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|+++++|++..+.+.|.
T Consensus 61 hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~ 140 (515)
T cd03338 61 HPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLI 140 (515)
T ss_pred CHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 44455556678999999999999999999999999999999999999999999999999999999999998766788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVE 511 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~ 511 (841)
++|+|++++|+.+.|.++|++++++|+.+++++...+.+|+++|+|.+..||+++||++++|++|++++ ++.+||++++
T Consensus 141 ~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~ 220 (515)
T cd03338 141 KSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIE 220 (515)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCcccc
Confidence 999999999999999999999999999999864333578999999999999999999999999999999 4433699999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
|+|+++++|+|++++++.+.++.++++++++.+.++|+++++++++++++.|++|||++++|+++++++++++||.++||
T Consensus 221 n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I 300 (515)
T cd03338 221 KAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKI 300 (515)
T ss_pred CCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+.+++.|||+|||+|+.+++|++|
T Consensus 301 ~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r 380 (515)
T cd03338 301 MVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAER 380 (515)
T ss_pred eEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874589999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++++++++|++|||||++|++|+.+|+ +++.+.++++|++
T Consensus 381 ~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~---------------------------------~~~~~~~~~~~~~ 427 (515)
T cd03338 381 SLHDALCVIRCLVKKRALIPGGGAPEIEIALQLS---------------------------------EWARTLTGVEQYC 427 (515)
T ss_pred HHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHH---------------------------------HHhccCCcHHHHH
Confidence 9999999999999999999999999999999999 6666778899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 428 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL 507 (515)
T cd03338 428 VRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507 (515)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred chhhhhcC
Q psy8873 832 KIDDIVNT 839 (841)
Q Consensus 832 ~iD~iI~~ 839 (841)
|||+||++
T Consensus 508 ~ID~ii~~ 515 (515)
T cd03338 508 KIDDIVLA 515 (515)
T ss_pred ccchhhcC
Confidence 99999975
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-92 Score=812.37 Aligned_cols=446 Identities=27% Similarity=0.434 Sum_probs=423.2
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC-ccchHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT-LADRENLI 432 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~-~~~~~~l~ 432 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++.. ..+.+.|.
T Consensus 70 P~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~ 149 (531)
T TIGR02347 70 PTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLL 149 (531)
T ss_pred hHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Confidence 66667778899999999999999999999999999999999999999999999999999999999997752 45788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
++|+|+++||+.+.+.++|++++++|+..+++. ...+|+++|++++..||+.+||++++|++|++++.+..||+.++|
T Consensus 150 ~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~--~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n 227 (531)
T TIGR02347 150 NVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD--GEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKN 227 (531)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHHhhc--CCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccC
Confidence 999999999999999999999999999999752 225888899999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEecCCcccccccHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG-------CN---VLLVQKSILRDAISDLA 582 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g-------~~---lvi~~~~I~~~~l~~~~ 582 (841)
|+|++++++|++++++.+..+.+++++++..+++.|++++.+++++|++.+ ++ +|+++++| ++.+
T Consensus 228 ~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I-----~~~a 302 (531)
T TIGR02347 228 AYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI-----DPPS 302 (531)
T ss_pred ceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCc-----cHHH
Confidence 999999999999999999999999999999999999999999999999976 25 99999999 9999
Q ss_pred HHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 583 ~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++||.++||++++++++++|+|||++|||++++++++++++++|+|++|++..+++++|++|++|..+ +.|||+|||+|
T Consensus 303 ~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TI~lrG~t 381 (531)
T TIGR02347 303 LDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-KSCTILIKGPN 381 (531)
T ss_pred HHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCC-CeEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|++|+++||++++++++++|++|||||++|++|+.+|+ +++.
T Consensus 382 ~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~---------------------------------~~~~ 428 (531)
T TIGR02347 382 DHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLK---------------------------------EEKK 428 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH---------------------------------HHhh
Confidence 9999999999999999999999999999999999999999999 6777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHH
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITL 822 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~ 822 (841)
+.++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||++.|||||+.+|+++|++
T Consensus 429 ~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~ 508 (531)
T TIGR02347 429 SVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQS 508 (531)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred HHHHHHHHHchhhhhcCC
Q psy8873 823 STETVRSILKIDDIVNTL 840 (841)
Q Consensus 823 A~e~a~~iL~iD~iI~~~ 840 (841)
|+|+|++|||||+||+++
T Consensus 509 A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 509 ATVIASQLLLVDEVMRAG 526 (531)
T ss_pred HHHHHHHHHhHHHHHhCc
Confidence 999999999999999864
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-92 Score=819.53 Aligned_cols=444 Identities=31% Similarity=0.520 Sum_probs=422.4
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++..+.+.|.++++|
T Consensus 74 ll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t 153 (525)
T TIGR02344 74 SMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQS 153 (525)
T ss_pred HHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999887678889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--ccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++++|+.+.|.+.|++++++|+..++++..++ .+|++ +|+|++++||+++||++++|++|++++....||++++|||
T Consensus 154 ~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~k 233 (525)
T TIGR02344 154 CIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPR 233 (525)
T ss_pred hhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCC
Confidence 99999999999999999999999997643122 45654 5899999999999999999999999983349999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++|++++++++.++.+++++++++++++|++++++++++|.+.|++||+++++| +++++++|.++||+++
T Consensus 234 Illl~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I-----~dla~~~l~~~~I~av 308 (525)
T TIGR02344 234 IVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGV-----SDLAQHYLLKANISAI 308 (525)
T ss_pred EEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
+++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 309 ~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIlLrG~t~~~l~E~er~l 387 (525)
T TIGR02344 309 RRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-KACTILLRGASKDVLNEIERNL 387 (525)
T ss_pred ecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-CEEEEEEEcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999877 8999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++++++++++||||||++|++||.+|+ +++.+.++.++++++
T Consensus 388 ~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~~~ 434 (525)
T TIGR02344 388 QDAMAVARNVLLEPKLLPGGGATEMAVSVYLA---------------------------------KKASKLEGVQQWPYR 434 (525)
T ss_pred HHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH---------------------------------HHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999 677778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|+..|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 435 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~ 514 (525)
T TIGR02344 435 AVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLR 514 (525)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999876 56899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|.++
T Consensus 515 id~ii~~~ 522 (525)
T TIGR02344 515 IDDIVSGV 522 (525)
T ss_pred hhHHhhcC
Confidence 99999764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-92 Score=816.30 Aligned_cols=446 Identities=32% Similarity=0.536 Sum_probs=421.2
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKS 434 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~i 434 (841)
.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|++ +++|++..+++.|.++
T Consensus 64 akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~i 143 (527)
T cd03335 64 AKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINV 143 (527)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHH
Confidence 348889999999999999999999999999999999999999999999999999999999996 8999876688899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
|+|+++||+.+.+.++|++++++|+..++.+..++ .+|+++|+|++.+||++++|++++|++|++++.+.+||+.++|
T Consensus 144 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n 223 (527)
T cd03335 144 AKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKN 223 (527)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccC
Confidence 99999999998899999999999999996322222 4889999999999999999999999999999954599999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++.+.++.++++++++.+.+.|++++++++++|.+.|++|||++++| ++.+++||.+++|+
T Consensus 224 ~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I-----~d~al~~L~~~~I~ 298 (527)
T cd03335 224 AKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGI-----DDMCLKYFVEAGAM 298 (527)
T ss_pred CcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCC------CCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+++++++++|+|||++|||+++++++++ +++++|+|++|++.++++++|++|++|+.+ ++|||+|||+|+.++
T Consensus 299 ~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-~~~TIllrG~t~~~l 377 (527)
T cd03335 299 AVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-SSASIILRGANDFML 377 (527)
T ss_pred EEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHH
Confidence 9999999999999999999999987654 345899999999999999999999999876 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|+++||++++++++++|++|||||++|++|+.+|+ +++++.++
T Consensus 378 ~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~---------------------------------~~~~~~~~ 424 (527)
T cd03335 378 DEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE---------------------------------NFATTLGS 424 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHH---------------------------------HHHhccCc
Confidence 999999999999999999999999999999999999999 67777889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCceeEEccCCccccccccCcccchHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTS 818 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~ 818 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.++ .+++|+|+.+|++.||++.|||||+.+|.+
T Consensus 425 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~ 504 (527)
T cd03335 425 REQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIK 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHH
Confidence 999999999999999999999999999999999999999876 357999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHchhhhhcCC
Q psy8873 819 AITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 819 ~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+.|+|+|++|||||++|++.
T Consensus 505 ~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 505 SLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred HHHHHHHHHHHHHhhcceeecC
Confidence 9999999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-92 Score=813.66 Aligned_cols=443 Identities=40% Similarity=0.629 Sum_probs=420.9
Q ss_pred hHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC--ccchHHHHHH
Q psy8873 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT--LADRENLIKS 434 (841)
Q Consensus 357 ~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~--~~~~~~l~~i 434 (841)
+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++ ..+++.|.++
T Consensus 84 kll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i 163 (532)
T TIGR02343 84 KLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQA 163 (532)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999874 2357889999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
|+|++++|+.+.+.+.|++++++|+..+.+ .+.+.+|+++|+|++++||+++||++++|++|++++.+..||+.++|||
T Consensus 164 a~t~l~sK~~~~~~~~ls~i~~~av~~i~~-~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~k 242 (532)
T TIGR02343 164 AKTSLGSKIVSKCHRRFAEIAVDAVLMVAD-MERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAK 242 (532)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHhhhh-cCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCc
Confidence 999999999999999999999999999854 2334789999999999999999999999999999994448999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++||+++++++.++.++++++++.+.+.|++++.++++++++.|++|||++++| ++.+++||.++||+++
T Consensus 243 I~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~i~~v 317 (532)
T TIGR02343 243 IAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF-----DDEANHLLLQNDLPAV 317 (532)
T ss_pred EEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc-----cHHHHHHHHHCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|+.+ +.+||+|||+|+.+++|++|+
T Consensus 318 ~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~E~er~ 396 (532)
T TIGR02343 318 RWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-KAVTIFIRGGNKMIIEEAKRS 396 (532)
T ss_pred EcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC-CEEEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 489999999887 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++++++++|++|||||++|++|+.+|+ +++.+.++.+++++
T Consensus 397 l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i 443 (532)
T TIGR02343 397 IHDALCVVRNLIKNSRIVYGGGAAEISCSLAVS---------------------------------QEADKYSGVEQYAI 443 (532)
T ss_pred HHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHH---------------------------------HHhccCCcHHHHHH
Confidence 999999999999999999999999999999999 67777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..+ ..++|+|+.+|.+.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 444 ~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL 523 (532)
T TIGR02343 444 RAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMIL 523 (532)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999754 5679999999999999999999999999999999999999999
Q ss_pred chhhhhcC
Q psy8873 832 KIDDIVNT 839 (841)
Q Consensus 832 ~iD~iI~~ 839 (841)
|||++|++
T Consensus 524 ~id~ii~~ 531 (532)
T TIGR02343 524 KIDDVISP 531 (532)
T ss_pred hHhhhccC
Confidence 99999975
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-91 Score=812.10 Aligned_cols=449 Identities=40% Similarity=0.651 Sum_probs=427.0
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
||+.+++++++++|+.++||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++.|++..+++.+.
T Consensus 68 hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~ 147 (517)
T cd03343 68 HPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLR 147 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 34445888999999999999999999999999999999999999999999999999999999999999998765788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCC-CcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~-~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
++|+++++||+.+.|.+.|++++++|+.++++.... ..+|+++|+|.+.+||+++||++++|++|++++.+..||+.++
T Consensus 148 ~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~ 227 (517)
T cd03343 148 KIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVE 227 (517)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccC
Confidence 999999999999999999999999999999753211 2588889999999999999999999999999994448999999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||||++++++||+++++++.++.++++++++++.++|++++++++++|++.|++||+++++| ++.+++||.++||
T Consensus 228 n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~l~~~gI 302 (517)
T cd03343 228 NAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGI-----DDLAQHYLAKAGI 302 (517)
T ss_pred CCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|+.+ +.|||+|||+|+.+++|++|
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~e~~~ 381 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-KAVTILLRGGTEHVVDELER 381 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++|+++++|+||||||++|++++.+|+ +++.+.+++++++
T Consensus 382 ~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~---------------------------------~~~~~~~~~~~~~ 428 (517)
T cd03343 382 ALEDALRVVADALEDGKVVAGGGAVEIELAKRLR---------------------------------EYARSVGGREQLA 428 (517)
T ss_pred HHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHH---------------------------------HHHhcCCCHHHHH
Confidence 9999999999999999999999999999999998 6666778899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 429 ~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 508 (517)
T cd03343 429 VEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508 (517)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||++|+++
T Consensus 509 ~id~ii~~~ 517 (517)
T cd03343 509 RIDDVIAAK 517 (517)
T ss_pred hhhHhhhCC
Confidence 999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-91 Score=810.73 Aligned_cols=445 Identities=41% Similarity=0.654 Sum_probs=420.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~l 431 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++. .+.+.|
T Consensus 77 P~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l 156 (526)
T cd03339 77 QIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPL 156 (526)
T ss_pred HHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHH
Confidence 334488899999999999999999999999999999999999999999999999999999999999998753 367889
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.+.|++++++|+..+.+. +...+|++.|+|++++||+++||++++|++|++++.+.+||+.++
T Consensus 157 ~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~-~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~ 235 (526)
T cd03339 157 IQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL-ERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVK 235 (526)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc-CCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceec
Confidence 9999999999999999999999999999988642 234678889999999999999999999999999994459999999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||||++++++||+++++++.++.++++++++.+.++|+++++++++++++.|++||+++++| ++.+++||.++||
T Consensus 236 n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~I 310 (526)
T cd03339 236 DAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF-----DDEANHLLLQNGL 310 (526)
T ss_pred CCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC-----CHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEA 669 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 669 (841)
++++++++++|+|||++|||++++++++++++++|+|+.|++.++|. +++++|++|+.+ +.+||+|||+|+.+++|+
T Consensus 311 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~ 389 (526)
T cd03339 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-KAVTIFIRGGNKMIIEEA 389 (526)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC-CEEEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 689999999887 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhH
Q psy8873 670 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDA 749 (841)
Q Consensus 670 ~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (841)
+|+++||++++++++++|++|||||++|++++.+|+ +++...++.++
T Consensus 390 er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~ 436 (526)
T cd03339 390 KRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVE---------------------------------KAADKCSGIEQ 436 (526)
T ss_pred HHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhccCCCHHH
Confidence 999999999999999999999999999999999998 67777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 750 YCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 750 ~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
+++++|++||+.||++|++|||+|+.+++.+|+..|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|+
T Consensus 437 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~ 516 (526)
T cd03339 437 YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK 516 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999754 5679999999999999999999999999999999999999
Q ss_pred HHHchhhhhc
Q psy8873 829 SILKIDDIVN 838 (841)
Q Consensus 829 ~iL~iD~iI~ 838 (841)
+|||||++|.
T Consensus 517 ~iL~iD~ii~ 526 (526)
T cd03339 517 MILKIDDVIV 526 (526)
T ss_pred HHhhhceecC
Confidence 9999999973
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-91 Score=808.36 Aligned_cols=441 Identities=33% Similarity=0.535 Sum_probs=420.6
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RENL 431 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~~l 431 (841)
..+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|++.++++|+++++|++..+ ++.|
T Consensus 82 ~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l 161 (533)
T PTZ00212 82 AAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDL 161 (533)
T ss_pred HHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHH
Confidence 3447889999999999999999999999999999999999999999999999999999999999999886433 6789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.+.|++++++|+..+.+ .+|+++|++++++||+++||++++|+++++++.. .||++++
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~-----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~ 235 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG-----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLE 235 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhc-----cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCcccc
Confidence 999999999999999999999999999999853 4788899999999999999999999999999854 6899999
Q ss_pred cceEEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 512 KAKIGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 512 n~killl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
||||++++++||++++++ +.++.+++++++..+.+.|+++++++++.|++.|++++++++.| ++.++++|.++|
T Consensus 236 n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I-----~d~a~~~L~~~~ 310 (533)
T PTZ00212 236 NCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLI-----YNYPEQLFAEAG 310 (533)
T ss_pred CCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCC
Confidence 999999999999999996 88899999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
|++++++++++++|||++|||++++++++++++++|+|++|++..+|+++|++|++|..+ +.|||+|||+|+.+++|++
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~e 389 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKG-EACTIVLRGASTHILDEAE 389 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCC-CEEEEEEECCChhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++++++++|++|||||++|++++.+|+ +++++.++++++
T Consensus 390 r~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~---------------------------------~~~~~~~~~~~~ 436 (533)
T PTZ00212 390 RSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVE---------------------------------ELAKKVEGKKSL 436 (533)
T ss_pred HHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHH---------------------------------HHHhhCCCHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 437 ~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~i 516 (533)
T PTZ00212 437 AIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMI 516 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|+..
T Consensus 517 L~id~ii~~~ 526 (533)
T PTZ00212 517 LRVDDIIRCA 526 (533)
T ss_pred HhhhHhhhcC
Confidence 9999999753
|
|
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-91 Score=805.22 Aligned_cols=441 Identities=32% Similarity=0.526 Sum_probs=420.4
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc---cchHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL---ADRENL 431 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~---~~~~~l 431 (841)
..+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++. .+++.|
T Consensus 70 ~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l 149 (517)
T cd03336 70 AAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDL 149 (517)
T ss_pred HHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHH
Confidence 33478889999999999999999999999999999999999999999999999999999999999998742 236789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.++|++++++|+..+.+ .+|.++|++++++||+++||++++|+++++++.. .||++++
T Consensus 150 ~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~-----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~ 223 (517)
T cd03336 150 LNIARTTLSSKILTQDKEHFAELAVDAVLRLKG-----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIE 223 (517)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHHHHhhc-----cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeec
Confidence 999999999999999999999999999999952 5778899999999999999999999999999743 6899999
Q ss_pred cceEEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 512 KAKIGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 512 n~killl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
||||++++++|+++++++ +.++.+++++|++.+.+.|+++++++++.|++.|++++++++.| ++.+++||.++|
T Consensus 224 n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I-----~~~~~~~l~~~~ 298 (517)
T cd03336 224 NAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLI-----YNYPEQLFADAG 298 (517)
T ss_pred cccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCC
Confidence 999999999999999996 88899999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
|++++++++++|+|||++|||++++++++++++++|+|++|++..+|+++|++|++|+.+ +.|||+|||+|+.+++|.+
T Consensus 299 I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~e 377 (517)
T cd03336 299 IMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG-EACTIVLRGASQQILDEAE 377 (517)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCC-ceEEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++++++++|++|||||++|++|+.+|+ +++++.++++++
T Consensus 378 r~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~ 424 (517)
T cd03336 378 RSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVE---------------------------------ELAKKTPGKKSL 424 (517)
T ss_pred HHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhhCCCHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 425 ~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 504 (517)
T cd03336 425 AIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMI 504 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|++.
T Consensus 505 L~id~ii~~~ 514 (517)
T cd03336 505 LRVDDIIKCA 514 (517)
T ss_pred HhHhHHhhcC
Confidence 9999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-90 Score=804.63 Aligned_cols=440 Identities=33% Similarity=0.543 Sum_probs=420.2
Q ss_pred hHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc----chHHHH
Q psy8873 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA----DRENLI 432 (841)
Q Consensus 357 ~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~----~~~~l~ 432 (841)
+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++.. +++.|.
T Consensus 73 kll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~ 152 (522)
T cd03340 73 KTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLE 152 (522)
T ss_pred HHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHH
Confidence 3888999999999999999999999999999999999999999999999999999999999999987642 367899
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCCCce
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNGPKR 509 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m~~~ 509 (841)
++|+|+++||+.+.+.++|++++++|+..+++ .+|.++|+|+++.||+++||++++|++|+++| ++ ..||+.
T Consensus 153 ~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~-----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~ 227 (522)
T cd03340 153 KCAATALNSKLIASEKEFFAKMVVDAVLSLDD-----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKK 227 (522)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHHhcc-----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCcc
Confidence 99999999999999999999999999999964 46788999999999999999999999999998 43 357999
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++||+++.+.+.++.++++++++.+.+.|++++.++++++++.|+++|+++++| ++.+++||.++
T Consensus 228 ~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i-----~d~a~~~l~~~ 302 (522)
T cd03340 228 FKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPI-----GDLATQYFADR 302 (522)
T ss_pred ccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-----cHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHH
Q psy8873 590 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEA 669 (841)
Q Consensus 590 ~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 669 (841)
||++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|..+ +.+||+|||+++.+++|.
T Consensus 303 ~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~ 381 (522)
T cd03340 303 DIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-KTCTIILRGGAEQFIEEA 381 (522)
T ss_pred CcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCC-ceEEEEEECCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhH
Q psy8873 670 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDA 749 (841)
Q Consensus 670 ~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (841)
+|+++||++++++++++|+||||||++|++++.+|+ +++++.+++++
T Consensus 382 er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~---------------------------------~~~~~~~~~~~ 428 (522)
T cd03340 382 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR---------------------------------DYSRTIAGKQQ 428 (522)
T ss_pred HHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHH---------------------------------HHhccCCCHHH
Confidence 999999999999999999999999999999999999 66667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 750 YCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 750 ~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
+++++|++||+.||++|++|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.+|+++|+.|+|+|+
T Consensus 429 ~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~ 508 (522)
T cd03340 429 LVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAAC 508 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||++|+++
T Consensus 509 ~iL~id~ii~~~ 520 (522)
T cd03340 509 LILSVDETIKNP 520 (522)
T ss_pred HHhhhhhheeCC
Confidence 999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-90 Score=797.27 Aligned_cols=439 Identities=33% Similarity=0.520 Sum_probs=417.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc---chHHHHHH
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA---DRENLIKS 434 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~---~~~~l~~i 434 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++.. +.+.|.++
T Consensus 74 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~i 153 (519)
T TIGR02341 74 VLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNI 153 (519)
T ss_pred HHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHH
Confidence 777889999999999999999999999999999999999999999999999999999999999987532 35789999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++|++++|+.+.+.+.|++++++|+..+.+ ..|.++|++.+++|+++++|++++|+++++++.. .||+.++||+
T Consensus 154 a~t~l~ski~~~~~~~~s~l~~~av~~i~~-----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~ 227 (519)
T TIGR02341 154 ARTTLSSKILSQHKDHFAQLAVDAVLRLKG-----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAK 227 (519)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhcc-----CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeecccc
Confidence 999999999999999999999999999842 2366789999999999999999999999999854 6899999999
Q ss_pred EEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 515 IGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 515 illl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
|++++++|+++++++ +.++.+++++++..+.+.|++++.++++.|++.|++++++++.| ++.+++||.+++|++
T Consensus 228 Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I-----~~~~~~~l~~~~I~~ 302 (519)
T TIGR02341 228 ILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLI-----YNYPEQLFADAGVMA 302 (519)
T ss_pred EEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcC-----CHHHHHHHHHCCcEE
Confidence 999999999999986 88899999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++.+|+|||++|||++++++++++++++|+|+.|++..+|+++|++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 303 v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i 381 (519)
T TIGR02341 303 IEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG-EACTIVLRGATQQILDESERSL 381 (519)
T ss_pred EecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCC-CEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||+++++++++++++|||||++|++++.+|+ +++++.+++++++++
T Consensus 382 ~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i~ 428 (519)
T TIGR02341 382 HDALCVLSQTVKESRTVLGGGCSEMLMSKAVA---------------------------------VEAQKVPGKEALAVE 428 (519)
T ss_pred HHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCChHHHHHH
Confidence 99999999999999999999999999999998 666778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHch
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~i 833 (841)
+|++||+.||++|++|||+|+.+++.+|+..|..+..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||||
T Consensus 429 ~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 429 AFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999887778999999999999999999999999999999999999999999
Q ss_pred hhhhcCCC
Q psy8873 834 DDIVNTLN 841 (841)
Q Consensus 834 D~iI~~~~ 841 (841)
|++|++.+
T Consensus 509 d~ii~~~~ 516 (519)
T TIGR02341 509 DNIIKAAP 516 (519)
T ss_pred HHHHhcCC
Confidence 99998753
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-89 Score=798.10 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=419.2
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhc-cccCCccchHHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEM-STPITLADRENLIKS 434 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~-s~~~~~~~~~~l~~i 434 (841)
.+++++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|++. ++|++..+.+.|.++
T Consensus 68 akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~v 147 (536)
T TIGR02340 68 AKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINV 147 (536)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHH
Confidence 3488899999999999999999999999999999999999999999999999999999999974 888876678899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
|+|+++||+.+.+.+.|++++++|+..++.+..++ .+|+++|++++.+||++++|++++|++|++++.+.+||+.++|
T Consensus 148 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n 227 (536)
T TIGR02340 148 AKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKK 227 (536)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecC
Confidence 99999999999999999999999999996322222 5788999999999999999999999999999955599999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++.+.++.++++.+++.+.+.|++++.+.+++|++.|++||+++++| ++.+++||.+++|+
T Consensus 228 ~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I-----~~~a~~~L~k~~I~ 302 (536)
T TIGR02340 228 AKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGI-----DDMCLKYFVEAGAM 302 (536)
T ss_pred CcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCC------CCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+++++++++|+|||++|||++++++.++ +++++|+|++|++.++++++|++|+++..+ ++|||+|||+|+.++
T Consensus 303 ~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TIlirG~t~~~l 381 (536)
T TIGR02340 303 GVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-KSASIILRGANDFML 381 (536)
T ss_pred EEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHH
Confidence 9999999999999999999999997544 455699999999999999999999998876 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|+++||++++++++++|++|||||++|++++.+|+ +++++.++
T Consensus 382 ~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~---------------------------------~~~~~~~~ 428 (536)
T TIGR02340 382 DEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE---------------------------------NFATTLGS 428 (536)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHH---------------------------------HHhhhCCC
Confidence 999999999999999999999999999999999999998 66667788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCceeEEccCCccccccccCcccchHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTS 818 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~ 818 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.++ ..++|||+.+|++.||++.|||||+.+|.+
T Consensus 429 ~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~ 508 (536)
T TIGR02340 429 REQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVK 508 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHH
Confidence 999999999999999999999999999999999999999875 247999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHchhhhhcCC
Q psy8873 819 AITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 819 ~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+.|+|+|++|||||++|++.
T Consensus 509 ~l~~A~e~a~~iL~ID~ii~~~ 530 (536)
T TIGR02340 509 SLKFATEAAITILRIDDLIKLN 530 (536)
T ss_pred HHHHHHHHHHHHHhhhhhhhcC
Confidence 9999999999999999999864
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-89 Score=794.86 Aligned_cols=445 Identities=33% Similarity=0.526 Sum_probs=422.5
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc---cchH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL---ADRE 429 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~---~~~~ 429 (841)
||+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++. .+++
T Consensus 70 hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~ 149 (522)
T TIGR02345 70 HPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQRE 149 (522)
T ss_pred ChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHH
Confidence 3334488899999999999999999999999999999999999999999999999999999999999998762 2457
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNG 506 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m 506 (841)
.|.++|+|+++||+.+.+.++|++++++|+.++++ ..+|+++|+|+++.||+++||++++|++|++++ ++ ..|
T Consensus 150 ~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~----~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~ 225 (522)
T TIGR02345 150 VLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDI----DDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQ 225 (522)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhh----ccCChhHheEEeecCCCHHhcceecceEEecccCccccccC
Confidence 89999999999999999999999999999999964 258888999999999999999999999999998 44 357
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
|+.++||+|++++++|++.+.+.+..+.++++++++++.+.|++++.++++++++.|+++|+++++| ++.+++||
T Consensus 226 ~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i-----~d~~~~~L 300 (522)
T TIGR02345 226 PKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPI-----GDLATQYF 300 (522)
T ss_pred CceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCc-----cHHHHHHH
Confidence 9999999999999999999999889999999999999999999999999999999999999999999 99999999
Q ss_pred HhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 587 ~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
.+++|++++++++++++|+|++|||++++++++++++++|+|+.|++.++++++|.+|++|+.+ ++|||+|||+|+.++
T Consensus 301 ~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-~~~TI~lrG~t~~~l 379 (522)
T TIGR02345 301 ADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-KTCTIILRGGAEQFI 379 (522)
T ss_pred HHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|.+|+++||+++++++++++.+|||||++|++++.+|+ +++.+.++
T Consensus 380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~---------------------------------~~~~~~~~ 426 (522)
T TIGR02345 380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILR---------------------------------EHSKKIDG 426 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHH---------------------------------HHHhhCCC
Confidence 999999999999999999999999999999999999998 66667789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.+|+++|+.|+|+
T Consensus 427 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~ 506 (522)
T TIGR02345 427 KQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEA 506 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
|++|||||++|++.
T Consensus 507 a~~iL~id~ii~~~ 520 (522)
T TIGR02345 507 ACTILSIDETIMNP 520 (522)
T ss_pred HHHHHhHHHHHhCC
Confidence 99999999999864
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-88 Score=783.85 Aligned_cols=444 Identities=31% Similarity=0.557 Sum_probs=418.9
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc-cCC-ccchHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMST-PIT-LADRENLI 432 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~-~~~-~~~~~~l~ 432 (841)
+.+++++++++|+.++||||||+++|+++||+++++++++|+||+.|++||+.|.+.++++|+++++ +++ ..+.+.|.
T Consensus 73 ~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~ 152 (531)
T TIGR02346 73 AAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELI 152 (531)
T ss_pred HHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 3348889999999999999999999999999999999999999999999999999999999999986 663 34678899
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
++++|++++|+.+. .++|++++++|+.++++. .++.+|++.|+|+++.||+.+||++++|++|++++. +||+.++|
T Consensus 153 ~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~-~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n 228 (531)
T TIGR02346 153 KALKASISSKQYGN-EDFLAQLVAKACSTVMPK-NPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKN 228 (531)
T ss_pred HHHHHHhccccCch-HHHHHHHHHHHHHHHhhc-CCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccC
Confidence 99999999998877 999999999999999752 223689999999999999999999999999999953 57999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+||++++++|++++++++.++.+++++++..+.+.|+++++++++++++.|++|||++++| ++++++||.+++|+
T Consensus 229 ~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I-----~d~~~~~l~~~~I~ 303 (531)
T TIGR02346 229 AKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSV-----GDMALHYCEKYNIM 303 (531)
T ss_pred CCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCc-----CHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
|+++++..+|+|||.+|||++++++++++++++|+|++|++.++|+++|.+|+++...++.+||+|||+|+.+++|++|+
T Consensus 304 av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~ 383 (531)
T TIGR02346 304 VLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERA 383 (531)
T ss_pred EEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887545999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++++++++|++|||||++|++++.+|+ +++++.++++++++
T Consensus 384 i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~---------------------------------~~~~~~~~~~~~~~ 430 (531)
T TIGR02346 384 IDDGVNVIKALVKDNRFLPGAGATEIELALRLK---------------------------------KYANKLPGLDQYAI 430 (531)
T ss_pred HHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHH---------------------------------HHhccCCCHHHHHH
Confidence 999999999999999999999999999999999 66667788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCc--cccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA--ITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~--~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|. +.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 431 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (531)
T TIGR02346 431 KKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTV 510 (531)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877778999999999 599999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|...
T Consensus 511 L~id~ii~~~ 520 (531)
T TIGR02346 511 LRVDQIIMAK 520 (531)
T ss_pred hhhhHhhccC
Confidence 9999999753
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-88 Score=779.34 Aligned_cols=409 Identities=31% Similarity=0.492 Sum_probs=387.4
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc-cchHHHHHHhhhhcc
Q psy8873 362 LSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL-ADRENLIKSAATSLN 440 (841)
Q Consensus 362 ~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~-~~~~~l~~ia~t~l~ 440 (841)
++++|+.++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++.+++. .+++.+.++|+++++
T Consensus 74 ~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~ 153 (484)
T cd03342 74 AATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLR 153 (484)
T ss_pred HHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999999999999999999999999998864 478899999999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEe
Q psy8873 441 SKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520 (841)
Q Consensus 441 sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~ 520 (841)
+|+.+.|.+.|++++++|+..++++ .+.||+++|+|++++||+++||++++|++|++++.+..||+.++||+|+++++
T Consensus 154 sk~~~~~~~~l~~l~~~A~~~v~~~--~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~ 231 (484)
T cd03342 154 TKLHADLADQLTEIVVDAVLAIYKP--DEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNV 231 (484)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc--CCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeC
Confidence 9999999999999999999999752 23799999999999999999999999999999994448999999999999999
Q ss_pred ecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChh
Q psy8873 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 600 (841)
Q Consensus 521 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 600 (841)
+|++++++...++.++ |||++++| ++.++++|.++||+++++++++
T Consensus 232 ~le~~~~~~~~~~~~~-----------------------------lvi~~~~I-----~~~al~~l~~~~I~av~~~~~~ 277 (484)
T cd03342 232 SLEYEKTEVNSGFFYS-----------------------------VVINQKGI-----DPPSLDMLAKEGILALRRAKRR 277 (484)
T ss_pred CCCCCccccCcEEEEE-----------------------------EEEeCCCc-----cHHHHHHHHHCCCeEEEeCCHH
Confidence 9999988876655432 99999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q psy8873 601 DIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVV 680 (841)
Q Consensus 601 ~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~ 680 (841)
+|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|+.+ +.+||+|||+|+.+++|++|+++||++++
T Consensus 278 ~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~tI~lrg~t~~~l~E~er~l~DAl~~v 356 (484)
T cd03342 278 NMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAV 356 (484)
T ss_pred HHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 89999999999999999999999999999
Q ss_pred HHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHH
Q psy8873 681 RCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALE 760 (841)
Q Consensus 681 ~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~ 760 (841)
++++++|++|||||++|++|+.+|+ +++.+.++++|+++++|++||+
T Consensus 357 k~~~~~~~~vpGGGa~e~~ls~~L~---------------------------------~~~~~~~~~~~~~i~~~a~Al~ 403 (484)
T cd03342 357 KNAIEDKCVVPGAGAFEVALYAHLK---------------------------------EFKKSVKGKAKLGVQAFADALL 403 (484)
T ss_pred HHHhcCCcEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6777788999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 761 VIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 761 ~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.||++|++|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||+||++.
T Consensus 404 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 404 VIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0358|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-90 Score=704.13 Aligned_cols=441 Identities=75% Similarity=1.126 Sum_probs=425.8
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchh
Q psy8873 366 QDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVS 445 (841)
Q Consensus 366 qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~ 445 (841)
||.++||||||||||||+||+.+.+|+++|+||+.|...|+.|.+..+++|++++.|++..|++.|.+-+.|++|||+.+
T Consensus 92 QD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvS 171 (534)
T KOG0358|consen 92 QDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVS 171 (534)
T ss_pred ccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCC
Q psy8873 446 QQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPP 525 (841)
Q Consensus 446 ~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~ 525 (841)
.|+..++.+.++|+.++.+|.+..++|+.+|+|.|..||.++|+++++|++|++.......|++++++||.++.|.+++|
T Consensus 172 q~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~P 251 (534)
T KOG0358|consen 172 QYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPP 251 (534)
T ss_pred hhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCC
Confidence 99999999999999999887777889999999999999999999999999999887333589999999999999999999
Q ss_pred cccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHH
Q psy8873 526 KTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 605 (841)
Q Consensus 526 ~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~i 605 (841)
++.+++++.++++.|++++++.|++|+.+++++|++.|+|++++|++|-+|+++|+++|||.+.+|++++.+.++|++.+
T Consensus 252 Ktdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefi 331 (534)
T KOG0358|consen 252 KTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFI 331 (534)
T ss_pred CCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCCCCCCCCceeeeeEEEEEe-cCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8873 606 CKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 684 (841)
Q Consensus 606 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l 684 (841)
|+.+|+.|+.+++.++++.+|+++.+++... |+.+++.+.++++.|+++||++||.+...++|.+|++|||||++|++.
T Consensus 332 ck~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLv 411 (534)
T KOG0358|consen 332 CKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLV 411 (534)
T ss_pred HhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhh
Confidence 9999999999999999999999999999754 555999999999989999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH
Q psy8873 685 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPL 764 (841)
Q Consensus 685 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~ 764 (841)
+.+.++||||+.|++++..|. +++++..|.+.|++++||+|||.||.
T Consensus 412 k~r~li~GGGapEieia~~L~---------------------------------~~a~t~eG~~~yc~rafA~AlEvIP~ 458 (534)
T KOG0358|consen 412 KKRALIAGGGAPEIEIALRLS---------------------------------ALARTLEGVEAYCWRAFADALEVIPY 458 (534)
T ss_pred hccceecCCCCcchHHHHHHH---------------------------------HHHhhhccchhHHHHHHHHHHhcccH
Confidence 999999999999999999999 88889999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 765 ~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+|++|+|++|..++++||+.|.+|+.+.||+++.|.+.|+++..|+.|+.|-.++++.|+|++.+||+||+|+.+
T Consensus 459 tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 459 TLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred hHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-86 Score=760.20 Aligned_cols=401 Identities=35% Similarity=0.584 Sum_probs=379.0
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++..+.+.|.++++|
T Consensus 74 ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t 153 (480)
T cd03337 74 SMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKS 153 (480)
T ss_pred HHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999887788899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--ccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++++|+.+.|.+.|++++++|+..++++.... .+|++ +|+|++++||+++||++++|++|++++...+||++++|||
T Consensus 154 ~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~k 233 (480)
T cd03337 154 CIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPR 233 (480)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCC
Confidence 99999999999999999999999997642222 46665 5999999999999999999999999994459999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++|++ ||+++++| ++.++++|.+++|+++
T Consensus 234 Illl~~~Le~-----------------------------------------lvi~~k~I-----~d~al~~L~~~~I~~v 267 (480)
T cd03337 234 IVLLDCPLEY-----------------------------------------LVITEKGV-----SDLAQHYLVKAGITAL 267 (480)
T ss_pred EEEEecCcce-----------------------------------------EEEeCCCc-----cHHHHHHHHHCCcEEE
Confidence 9999999975 99999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
+++++++|+|||++|||++++++++++++++|+ |+.+++.+++++++++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 268 ~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~e~er~l 346 (480)
T cd03337 268 RRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-KACTILLRGASKDVLNEVERNL 346 (480)
T ss_pred EeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 67778888899999999999886 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++++++++|++|||||++|++++.+|+ +++.+.+++++++++
T Consensus 347 ~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~---------------------------------~~~~~~~~~~~~~~~ 393 (480)
T cd03337 347 QDAMAVARNIILNPKLVPGGGATEMAVSHALS---------------------------------EKAKSIEGVEQWPYK 393 (480)
T ss_pred HHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHH
Confidence 99999999999999999999999999999998 667778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|++.|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 394 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~ 473 (480)
T cd03337 394 AVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLR 473 (480)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999887 57899999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q psy8873 833 IDDIVN 838 (841)
Q Consensus 833 iD~iI~ 838 (841)
||++|+
T Consensus 474 id~ii~ 479 (480)
T cd03337 474 IDDIVS 479 (480)
T ss_pred hhheec
Confidence 999985
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-83 Score=736.80 Aligned_cols=399 Identities=46% Similarity=0.710 Sum_probs=381.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.+.++++|
T Consensus 66 ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~t 145 (464)
T cd00309 66 LLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATT 145 (464)
T ss_pred HHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999666689999999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEE
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGL 517 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~kill 517 (841)
++++|+.+.|.+++++++++|+.++++... .+|.++|+|++.+||++.||++++|++|++++.+..||+.++||||++
T Consensus 146 sl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili 223 (464)
T cd00309 146 SLNSKLVSGGDDFLGELVVDAVLKVGKENG--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILL 223 (464)
T ss_pred cccccccccchHHHHHHHHHHHHHhccccC--ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEE
Confidence 999999999999999999999999976332 677889999999999999999999999999994448999999999999
Q ss_pred EEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecC
Q psy8873 518 IQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597 (841)
Q Consensus 518 l~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 597 (841)
++++|++ ||+++++| ++.++++|.+++|++++++
T Consensus 224 ~~~~Le~-----------------------------------------lIi~~~~I-----~~~al~~L~~~~I~~v~~~ 257 (464)
T cd00309 224 LDCKLEY-----------------------------------------VVIAEKGI-----DDEALHYLAKLGIMAVRRV 257 (464)
T ss_pred EecCcce-----------------------------------------EEecCCCc-----CHHHHHHHHHCCeEEEEeC
Confidence 9999975 89999999 9999999999999999999
Q ss_pred ChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 598 ~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|.+++.+ +.|||+|||+|+.+++|++|+++||+
T Consensus 258 ~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~TIllrG~t~~~l~e~~r~i~dal 336 (464)
T cd00309 258 RKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG-KVATILLRGATEVELDEAERSLHDAL 336 (464)
T ss_pred CHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC-CEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 89999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHH
Q psy8873 678 CVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 757 (841)
+++++++++|++|||||++|++++.+|+ +++.+.++++++++++|++
T Consensus 337 ~~~~~~~~~~~~vpGGGa~E~~ls~~L~---------------------------------~~~~~~~~~~~~~~~~~a~ 383 (464)
T cd00309 337 CAVRAAVEDGGIVPGGGAAEIELSKALE---------------------------------ELAKTLPGKEQLGIEAFAD 383 (464)
T ss_pred HHHHHHHHcCCcccCCcHHHHHHHHHHH---------------------------------HHhcccchHHHHHHHHHHH
Confidence 9999999999999999999999999998 6666778999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhh
Q psy8873 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837 (841)
Q Consensus 758 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI 837 (841)
||+.||++|++|||+|+.+++.+|++.|.++..++|+|..+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|
T Consensus 384 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 384 ALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999998877789999999999999999999999999999999999999999999998
Q ss_pred c
Q psy8873 838 N 838 (841)
Q Consensus 838 ~ 838 (841)
+
T Consensus 464 ~ 464 (464)
T cd00309 464 V 464 (464)
T ss_pred C
Confidence 5
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-83 Score=730.79 Aligned_cols=406 Identities=33% Similarity=0.588 Sum_probs=380.0
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc-C-CccchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP-I-TLADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~-~-~~~~~~~l 431 (841)
|+.+++++.+++|+.++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ + +..+.+.+
T Consensus 62 P~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l 141 (472)
T cd03341 62 PAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEV 141 (472)
T ss_pred HHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHH
Confidence 334488899999999999999999999999999999999999999999999999999999999999875 4 33467789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++++|+++||..+ +.++|++++++|+.++++. +.+.||+++|+|++++||+.+||++++|++|++++. .+++.++
T Consensus 142 ~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~-~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~ 217 (472)
T cd03341 142 SKALKTAIASKQYG-NEDFLSPLVAEACISVLPE-NIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVK 217 (472)
T ss_pred HHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhc-cCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceecc
Confidence 99999999999876 7999999999999999753 235789999999999999999999999999988753 4568899
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||+|++++++|++ |++||+++++| ++.++++|.++||
T Consensus 218 n~~Ili~~~~Le~--------------------------------------g~~lvi~~~~I-----~d~al~~l~~~~I 254 (472)
T cd03341 218 KAKVAVFSCPFDI--------------------------------------GVNVIVAGGSV-----GDLALHYCNKYGI 254 (472)
T ss_pred CCcEEEEeccccC--------------------------------------CCeEEEECCCC-----CHHHHHHHHHCCe
Confidence 9999999999985 89999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|...++.+||+|||+|+.+++|++|
T Consensus 255 ~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er 334 (472)
T cd03341 255 MVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVER 334 (472)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998763489999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++++++++|++|||||++|++++.+|+ +++.+.+++++++
T Consensus 335 ~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~---------------------------------~~~~~~~~~~~~~ 381 (472)
T cd03341 335 AIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLK---------------------------------EYGEKTPGLEQYA 381 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHH---------------------------------HHhhccCCHHHHH
Confidence 9999999999999999999999999999999998 6666677899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCC--ccccccccCcccchHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRS 829 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~ 829 (841)
+++|++||+.||++|++|||+|+.+++.+|+..|..++.++|||+.+| ++.||++.|||||+.+|+++|+.|+|+|++
T Consensus 382 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 461 (472)
T cd03341 382 IKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVT 461 (472)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777899999999 999999999999999999999999999999
Q ss_pred HHchhhhhcC
Q psy8873 830 ILKIDDIVNT 839 (841)
Q Consensus 830 iL~iD~iI~~ 839 (841)
|||||++|++
T Consensus 462 iL~id~ii~~ 471 (472)
T cd03341 462 VLRVDQIIMA 471 (472)
T ss_pred Hhhhcceeec
Confidence 9999999975
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0361|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-82 Score=648.52 Aligned_cols=478 Identities=31% Similarity=0.491 Sum_probs=446.0
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+.+||-++.+.++|-...- .+..+..+..- .....||..+.+++.+++||.++||||||||+|++|+|+++.-+
T Consensus 38 tTLGP~GmDkLivd~~g~~-----tIsNDGATIlK-lldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpf 111 (543)
T KOG0361|consen 38 TTLGPRGMDKLIVDSKGKT-----TISNDGATILK-LLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPF 111 (543)
T ss_pred hccCccccceeeecCCCcE-----EEecCcHHHHH-HHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhH
Confidence 3567777667777754432 33333333322 23667899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc----chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA----DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR 467 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~----~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~ 467 (841)
++.|+||..|+++|++|...|++.++++++.++.. -++.|+++|.|+++||.+....++|+++++||+..+.
T Consensus 112 iedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld---- 187 (543)
T KOG0361|consen 112 IEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLD---- 187 (543)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhc----
Confidence 99999999999999999999999999999876532 3778999999999999999999999999999999884
Q ss_pred CCcccccceEEEEccCCccccceeEEeEEEecCCCC---CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHH
Q psy8873 468 DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSAN---VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRV 544 (841)
Q Consensus 468 ~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~---~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~ 544 (841)
...|.+.|-|+|++||+++||.+++|+.|.+.|++ ++.|++..||||+++|.+||....+.+..+.+.++++++.+
T Consensus 188 -~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~i 266 (543)
T KOG0361|consen 188 -NDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAI 266 (543)
T ss_pred -cccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHH
Confidence 34567799999999999999999999999999844 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCC
Q psy8873 545 LKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH 624 (841)
Q Consensus 545 ~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~ 624 (841)
...||+.+.++++++...|+++|++.-.| .|++.+||.+++|+|-.|++.+||.|+..++|+++.++..++.++.
T Consensus 267 VDAEW~Ii~~KL~ki~~sGAnVVLSkLpI-----GD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~ 341 (543)
T KOG0361|consen 267 VDAEWNIIYDKLDKIHESGANVVLSKLPI-----GDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEV 341 (543)
T ss_pred HhHHHHHHHHHHHHHHhcCCeEEEecccc-----hHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhh
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHh
Q psy8873 625 LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 704 (841)
Q Consensus 625 lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L 704 (841)
||.|..|+++++|++||.+|++|+.. +.||++|||+.++.++|.+|++|||++++|.++++..||+|||++||+||++|
T Consensus 342 LG~C~~FeE~QvG~eRyN~Fegcp~a-ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l 420 (543)
T KOG0361|consen 342 LGTCALFEERQVGGERYNLFEGCPKA-KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL 420 (543)
T ss_pred cchhhhHHHHhhcchhhhhhcCCCcc-ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH
Confidence 99999999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy8873 705 TKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 784 (841)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 784 (841)
+ +|+.++++++|+.+.+|++|||.|||+||+|+|+|..+++.+||..
T Consensus 421 R---------------------------------d~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~r 467 (543)
T KOG0361|consen 421 R---------------------------------DYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQR 467 (543)
T ss_pred H---------------------------------HhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 785 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 785 ~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|.+|..|+|+|.+++.+.|+++.+||||..||.+++..|+|+|++||.+|+.|+.
T Consensus 468 HA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn 522 (543)
T KOG0361|consen 468 HAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKN 522 (543)
T ss_pred hhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999975
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-80 Score=700.13 Aligned_cols=433 Identities=36% Similarity=0.559 Sum_probs=403.0
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhcc
Q psy8873 361 ELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLN 440 (841)
Q Consensus 361 ~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~ 440 (841)
+.+++||.++||||||++||+++||+++.+++.+|+||+.|++||++|.+.+.++|++++++++..+.+. +++.++++
T Consensus 72 eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~ 149 (524)
T COG0459 72 EVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVA 149 (524)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheee
Confidence 3344556778999999999999999999999999999999999999999999999999999987544434 88999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCC-ceeecceEEEE
Q psy8873 441 SKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP-KRVEKAKIGLI 518 (841)
Q Consensus 441 sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~-~~~~n~killl 518 (841)
+|..+.+ ++|++++++|+.+++... . |++.|.+++..||+.+++++++|++|++++ .+..|| +.++||+|+++
T Consensus 150 sk~~~~~-~~i~~lv~~Av~~v~~~~---~-d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~ 224 (524)
T COG0459 150 SKSANSD-EEIGELVVEAVEKVGKEQ---S-DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLL 224 (524)
T ss_pred eeeccCh-HHHHHHHHHHHHHhcccc---c-ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEE
Confidence 9988777 999999999999997532 1 778999999999999999999999999977 555899 89999999999
Q ss_pred EeecCCCcccCCcEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEecCCcccccccHHHHHHHHhcCcEEEec
Q psy8873 519 QFCISPPKTDMDHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCN-VLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596 (841)
Q Consensus 519 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~-~~i~~~v~~i~~~g~~-lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~ 596 (841)
+++|++.+++.+.++.++++.+++.|.+.|+ +.+..++.++.+.+++ +++++++| +|++++||.+.+|+++++
T Consensus 225 d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi-----~D~~~~~L~d~~Ilt~~~ 299 (524)
T COG0459 225 DKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI-----DDLAKAYLEDIAILTGRR 299 (524)
T ss_pred ccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC-----cHHHHHHHHhhcceecce
Confidence 9999999999999999999999999999999 9999999999999999 99999999 999999999999999999
Q ss_pred CChhHH-HHHHHHcCCcccccCCCCCCCCcee--eeeEEEEEecCeeEEEEEccCC-CCceEEEEEeCCCHHHHHHHHHH
Q psy8873 597 IEREDI-EFVCKTLNTRPIASLDHFLPEHLSS--ADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 597 v~~~~L-~~ia~~tGa~ii~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+.++++ ++|++++||++++.++++++..+|. |..++...+++.++.+|++++. .++.|||++||+|+.+++|.+|+
T Consensus 300 v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~ 379 (524)
T COG0459 300 VKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERR 379 (524)
T ss_pred ecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHH
Confidence 999999 8999999999999999999999999 9999999999999999999876 35899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC-hhHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG-IDAYC 751 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 751 (841)
++|||+++|+++++|++|||||++|++++.+|+ +++.+.++ ++|++
T Consensus 380 i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~---------------------------------~~~~~~~g~~e~~~ 426 (524)
T COG0459 380 IEDALNVVRAAVEEGKIVPGGGAAEIEAALRLR---------------------------------EYAMTVEGGDEQLG 426 (524)
T ss_pred HHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHH---------------------------------hhhccCCchHHHHH
Confidence 999999999999999999999999999999999 55334444 89999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCcc-ccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI-TNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~-~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
+++|++||+.|||+|++|||+||.+++.+|++.|. .+++|+|+.+|++ .||++.|||||+.||+++|+.|+++|.+|
T Consensus 427 i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 427 IEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999775 4569999999999 78999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
|++|++|.+.
T Consensus 505 L~~d~iI~~~ 514 (524)
T COG0459 505 LTIDDIIAAK 514 (524)
T ss_pred HHHHHhhccC
Confidence 9999999875
|
|
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-79 Score=705.01 Aligned_cols=394 Identities=22% Similarity=0.319 Sum_probs=356.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+.+++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.+.|.++|++
T Consensus 72 ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~t 149 (542)
T PRK12849 72 LVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATI 149 (542)
T ss_pred HHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccc-ceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVED-TELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~d-S~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++.+ +++++++++|+..+++ ++.| .+. .|++.+| |++++|++|+++| ++. .||+.
T Consensus 150 s~~~~------~~l~~lv~~Av~~v~~---~g~i-----~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~ 213 (542)
T PRK12849 150 SANGD------EEIGELIAEAMEKVGK---DGVI-----TVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAV 213 (542)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CCcE-----eEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEE
Confidence 98755 8999999999999974 2333 333 5878775 8999999999999 441 36899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ +++++ +.++++++.+.|++|||++++| ++.++++|.++
T Consensus 214 ~~n~~Ili~d~~i-------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I-----~~~al~~l~~~ 264 (542)
T PRK12849 214 LEDPLILLTDKKI-------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVN 264 (542)
T ss_pred eeCcEEEeecCCc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHh
Confidence 9999999999955 34433 5567899999999999999999 99999999877
Q ss_pred ------CcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|++|..+
T Consensus 265 ~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i 341 (542)
T PRK12849 265 KLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAI 341 (542)
T ss_pred hhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHH
Confidence 999999887 55699999999999999 68999999999999999744 889999887653
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|++
T Consensus 342 ~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ 420 (542)
T PRK12849 342 EARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLR 420 (542)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHH
Confidence 4699999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++ +.++++|+++++|++||+.||++|++|||+|+.++++
T Consensus 421 ls~~L~---------------------------------~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~ 466 (542)
T PRK12849 421 AAKALD---------------------------------ELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVA 466 (542)
T ss_pred HHHHHH---------------------------------Hhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999998 677 7889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|++.| .++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.+
T Consensus 467 ~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~ 523 (542)
T PRK12849 467 KVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK 523 (542)
T ss_pred HHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 998864 469999999999999999999999999999999999999999999999763
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-79 Score=702.91 Aligned_cols=395 Identities=23% Similarity=0.334 Sum_probs=360.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.++|.++|++
T Consensus 72 ll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~t 149 (542)
T PRK00013 72 LVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATI 149 (542)
T ss_pred HHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHh
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 78889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~~~ 510 (841)
+++++ +.+++++++|+..+++ ++ .|+|.+..| ..++|++++|++|+++| ++ +.||+.+
T Consensus 150 s~~~~------~~ls~lv~~Av~~v~~---~g-----~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~ 214 (542)
T PRK00013 150 SANGD------EEIGKLIAEAMEKVGK---EG-----VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAEL 214 (542)
T ss_pred cccch------HHHHHHHHHHHHHhCc---CC-----cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEE
Confidence 98754 8999999999999964 22 378887776 77899999999999999 44 1458899
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|+++++.+ +++++ +.++++++.+.|++|||++++| ++.++++|..++
T Consensus 215 ~n~~Ilv~d~~i-------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~ 265 (542)
T PRK00013 215 ENPYILITDKKI-------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDV-----EGEALATLVVNK 265 (542)
T ss_pred ecCEEEEEcCcc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHcC
Confidence 999999999965 44533 5578999999999999999999 999999998775
Q ss_pred ------cEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 ------VLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 ------I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++. .+++++|+++..+
T Consensus 266 ~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~ 342 (542)
T PRK00013 266 LRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIK 342 (542)
T ss_pred CcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHH
Confidence 99999886 88999999999999999 7999999999999999975 3889999887654
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++
T Consensus 343 ~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 343 ARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 2388999999999999999999999999999999998 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ ++ .+.++++|+++++|++||+.|||+|++|||+|+.+++.+
T Consensus 422 s~~L~---------------------------------~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~ 467 (542)
T PRK00013 422 APALE---------------------------------AL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEK 467 (542)
T ss_pred HHHHH---------------------------------Hh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99998 66 567889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|++.| ++++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.
T Consensus 468 l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~ 523 (542)
T PRK00013 468 VKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVAD 523 (542)
T ss_pred HHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99887 467999999999999999999999999999999999999999999999975
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-78 Score=700.26 Aligned_cols=395 Identities=19% Similarity=0.287 Sum_probs=357.1
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+.+++|++++||||||+++||++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.+++.+++++
T Consensus 73 ll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~~~~l~~va~~ 150 (545)
T PRK12852 73 MVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--SSAEIAQVGTI 150 (545)
T ss_pred HHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHhh
Confidence 7788899999999999999999999999999999999999999999999999999999999999987 56679999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++++ +.+++++++|+.++++ ++. |.+.. |+.. .++++++|+.|+++| ++. .|+..
T Consensus 151 s~~~~------~~l~~li~eA~~~vg~---~g~-----i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~ 214 (545)
T PRK12852 151 SANGD------AAIGKMIAQAMQKVGN---EGV-----ITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVE 214 (545)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CCc-----eeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEE
Confidence 99886 8999999999999975 233 34442 6665 799999999999999 542 48899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ +++ +++.++++.+.+.|++|||++++| ++.++++|..+
T Consensus 215 l~n~~Ili~d~~i-------------~~~-----------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~n 265 (545)
T PRK12852 215 LDDAYILLHEKKL-------------SGL-----------QAMLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVN 265 (545)
T ss_pred ecCceEEEecCcc-------------CCH-----------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHHh
Confidence 9999999987754 333 367888999999999999999999 89888888754
Q ss_pred ------CcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|.++..+
T Consensus 266 k~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i 342 (545)
T PRK12852 266 RLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADI 342 (545)
T ss_pred cccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHH
Confidence 899999776 89999999999999999 68999999999999999866 688888876542
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|++
T Consensus 343 ~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~ 421 (545)
T PRK12852 343 EARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLR 421 (545)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHH
Confidence 5889999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++.. ++.+|+++++|++||+.||++|++|||+|+.++++
T Consensus 422 ~s~~L~---------------------------------~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~ 467 (545)
T PRK12852 422 AKKAVG---------------------------------RINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVG 467 (545)
T ss_pred HHHHHH---------------------------------HhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999998 66655 77899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|++.| ++++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+..
T Consensus 468 ~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 468 KILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAEL 525 (545)
T ss_pred HHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 998876 4679999999999999999999999999999999999999999999999864
|
|
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-78 Score=697.61 Aligned_cols=395 Identities=23% Similarity=0.336 Sum_probs=357.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++||++||+++.+|+++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|++
T Consensus 84 ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~t 161 (555)
T PTZ00114 84 LIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATI 161 (555)
T ss_pred HHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +.+++++++|+..+++ ++ . |.+..|++.+|| ++++|++|+++| ++ +.||..
T Consensus 162 s~~~~------~~l~~li~eAv~~vg~---~g-----~--I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~ 225 (555)
T PTZ00114 162 SANGD------VEIGSLIADAMDKVGK---DG-----T--ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVE 225 (555)
T ss_pred HcCCh------HHHHHHHHHHHHHhCc---CC-----c--EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEE
Confidence 99876 8999999999999974 22 2 456679999998 899999999999 54 136899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++|+ ++ +.+.++++++.+.|++|||++++| ++.++++|..+
T Consensus 226 l~~~~Ili~d~~L~-------------~~-----------~~i~~~le~i~~~~~~llI~~~~i-----~~~al~~L~~n 276 (555)
T PTZ00114 226 LENPLILVTDKKIS-------------SI-----------QSILPILEHAVKNKRPLLIIAEDV-----EGEALQTLIIN 276 (555)
T ss_pred ecCCEEEEEcCCCC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHh
Confidence 99999999999986 22 237788999999999999999999 99999998876
Q ss_pred C------cEEEec-----CChhHHHHHHHHcCCcccccC------CCCCCCCceeeeeEEEEEecCeeEEEEEccCC---
Q psy8873 590 K------VLVVKD-----IEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQN--- 649 (841)
Q Consensus 590 ~------I~~v~~-----v~~~~L~~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~--- 649 (841)
+ |+++++ +++++|+|||++|||+++++. ++++++++|+|++|++++ .++++|.++..
T Consensus 277 ~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~ 353 (555)
T PTZ00114 277 KLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAE 353 (555)
T ss_pred CCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHH
Confidence 5 999987 567999999999999999997 788888999999999877 55666665430
Q ss_pred -------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHH
Q psy8873 650 -------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 698 (841)
Q Consensus 650 -------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~ 698 (841)
.++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+
T Consensus 354 i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~ 432 (555)
T PTZ00114 354 IKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALL 432 (555)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHH
Confidence 34899999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc--ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 699 ELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD--TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 699 ~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
+++.+|+ +++. ..++++|+++++|++||+.||++|++|||+|+.+
T Consensus 433 ~~s~~L~---------------------------------~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~ 479 (555)
T PTZ00114 433 RASKLLD---------------------------------KLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAV 479 (555)
T ss_pred HHHHHHH---------------------------------HHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999998 5554 5788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
++++|++ .+++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+||++|+.
T Consensus 480 v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~ 539 (555)
T PTZ00114 480 VVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVD 539 (555)
T ss_pred HHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999976 45678999999999999999999999999999999999999999999999976
|
|
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-78 Score=692.00 Aligned_cols=392 Identities=24% Similarity=0.341 Sum_probs=358.6
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+++.++|+|
T Consensus 70 ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~t 147 (520)
T cd03344 70 LVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATI 147 (520)
T ss_pred HHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999999999997 78899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccc-ceeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVED-TELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~d-S~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +++++++++|+..+++ ++ .|.+ .+||+..| +++++|++|++++ ++ +.|++.
T Consensus 148 s~~~~------~~l~~lv~~A~~~v~~---~~-----~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 211 (520)
T cd03344 148 SANGD------EEIGELIAEAMEKVGK---DG-----VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVE 211 (520)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CC-----cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEE
Confidence 99976 8999999999999964 22 2444 36888888 7999999999998 44 124578
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++| +++++ +.++++++.+.|++|||++++| ++.++++|.++
T Consensus 212 ~~n~~Ili~d~~l-------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i-----~~~al~~l~~~ 262 (520)
T cd03344 212 LENPYILLTDKKI-------------SSIQE-----------LLPILELVAKAGRPLLIIAEDV-----EGEALATLVVN 262 (520)
T ss_pred eeCCEEEEECCCC-------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHHc
Confidence 9999999999996 34433 6667899999999999999999 99999999988
Q ss_pred Cc------EEEecC-----ChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 KV------LVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ~I------~~v~~v-----~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
++ ++++++ ++++|+|||++|||++++ ++++++++++|+|+.|++.+ +++++++++..+
T Consensus 263 ~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i 339 (520)
T cd03344 263 KLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAI 339 (520)
T ss_pred CCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHH
Confidence 88 999877 899999999999999999 78899989999999999866 788999877653
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++
T Consensus 340 ~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~ 418 (520)
T cd03344 340 KARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLR 418 (520)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHH
Confidence 3699999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++. .++++++++++|++||+.||++|++|||+|+.++++
T Consensus 419 ~s~~L~---------------------------------~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~ 464 (520)
T cd03344 419 ASPALD---------------------------------KLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVE 464 (520)
T ss_pred HHHHHH---------------------------------Hhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999 6776 889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhc
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVN 838 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~ 838 (841)
+|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||.+|.
T Consensus 465 ~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 465 KVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 9998764 799999999999999999999999999999999999999999999986
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=692.43 Aligned_cols=395 Identities=22% Similarity=0.301 Sum_probs=358.7
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.+.+.+++++
T Consensus 73 ll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~ 150 (541)
T PRK12851 73 MVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATI 150 (541)
T ss_pred HHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 67889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC------CCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV------NGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~------~m~~~~ 510 (841)
+++.+ +.+++++++|+..+++ ++ .+.|.+.. ++..++++++|++|+++| ++. .||+.+
T Consensus 151 s~~~~------~~l~~lv~~Av~~vg~---~g-----~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 215 (541)
T PRK12851 151 SANGD------AEIGRLVAEAMEKVGN---EG-----VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAEL 215 (541)
T ss_pred hccCh------HHHHHHHHHHHHHhcc---cC-----ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEe
Confidence 88644 8999999999999974 23 35666655 467889999999999999 541 499999
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|++++++++ +. +.+.++++++.+.|++|||++++| ++.++++|..++
T Consensus 216 ~~~~Ilv~d~~i~-------------~~-----------~~i~~~l~~i~~~~~~lvi~~~~I-----~~~al~~l~~n~ 266 (541)
T PRK12851 216 EDPYILIHEKKIS-------------NL-----------QDLLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVNK 266 (541)
T ss_pred cccEEEEEcCCcC-------------cH-----------HHHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHcC
Confidence 9999999999853 22 237788999999999999999999 999999999888
Q ss_pred c------EEEec-----CChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 V------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 I------~~v~~-----v~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
| ++|++ +++++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|.+|..+
T Consensus 267 i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~ 343 (541)
T PRK12851 267 LRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIE 343 (541)
T ss_pred CcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHH
Confidence 6 99996 8899999999999999999 68899999999999999866 888999887653
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+++
T Consensus 344 ~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 344 GRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 2388999999999999999999999999999999998 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ +++.. ++++++++++|++||+.||++|++|||+|+.+++.+
T Consensus 423 s~~L~---------------------------------~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~ 468 (541)
T PRK12851 423 VKALD---------------------------------KLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGK 468 (541)
T ss_pred HHHHH---------------------------------HHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998 66655 889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+||++|+..
T Consensus 469 l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~ 524 (541)
T PRK12851 469 LREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEK 524 (541)
T ss_pred HHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 98865 369999999999999999999999999999999999999999999999864
|
|
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=692.52 Aligned_cols=395 Identities=20% Similarity=0.313 Sum_probs=356.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.++|.+++++
T Consensus 73 ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~ 150 (544)
T PRK12850 73 MVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATI 150 (544)
T ss_pred HHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC------CCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV------NGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~------~m~~~~ 510 (841)
+++++ +.+++++++|+..+++ ++.++++.+ +..| .++++++|++|+++| ++. .||+.+
T Consensus 151 s~~~~------~~l~~lv~eAv~~vg~---~g~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~ 215 (544)
T PRK12850 151 SANGD------ESIGEMIAEAMDKVGK---EGVITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAEL 215 (544)
T ss_pred hcCCH------HHHHHHHHHHHHHhcc---cCceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEE
Confidence 98886 8999999999999975 244444332 2223 688999999999998 541 258899
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|+++++.++ +. +.+.++++++.+.|++|||++++| ++.++++|..++
T Consensus 216 ~n~~Ill~d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~I-----~d~al~~l~~n~ 266 (544)
T PRK12850 216 EDPYILLHEKKIS-------------NL-----------QDLLPILEAVVQSGRPLLIIAEDV-----EGEALATLVVNK 266 (544)
T ss_pred eCCEEEEEecccC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCC-----ChHHHHHHHHcC
Confidence 9999999999652 22 248888999999999999999999 999999999999
Q ss_pred c------EEEec-----CChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 V------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 I------~~v~~-----v~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
| ++|++ +++++|+|||++|||++++ +++++++++||+|++|++.+ +++++|++|..+
T Consensus 267 i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~ 343 (544)
T PRK12850 267 LRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIE 343 (544)
T ss_pred CcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHH
Confidence 8 99998 7899999999999999999 68999999999999999765 788999887653
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+++
T Consensus 344 ~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~ 422 (544)
T PRK12850 344 ARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (544)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 3589999999999999999999999999999999997 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ ++ .+.++++|+++++|++||+.||++|++|||+|+.+++.+
T Consensus 423 s~~L~---------------------------------~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~ 468 (544)
T PRK12850 423 RSALR---------------------------------GL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGK 468 (544)
T ss_pred HHHHH---------------------------------hc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998 55 567889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|++.
T Consensus 469 l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~ 524 (544)
T PRK12850 469 VAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA 524 (544)
T ss_pred HHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 98865 368999999999999999999999999999999999999999999999864
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=693.17 Aligned_cols=399 Identities=21% Similarity=0.292 Sum_probs=348.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||++||+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++ +.+.|.++|++
T Consensus 72 li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~t 149 (529)
T CHL00093 72 LIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASI 149 (529)
T ss_pred HHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Confidence 6667777888899999999999999999999999999999999999999999999999999999997 78889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~~~ 510 (841)
+++.+ +.|++|+++|+.++++ ++.| .+.. .+++..++++++|++|+++| ++ +.|+..+
T Consensus 150 s~~~~------~~l~~lv~eAv~~vg~---~g~i-----~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l 214 (529)
T CHL00093 150 SAGND------EEVGSMIADAIEKVGR---EGVI-----SLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQ 214 (529)
T ss_pred hccCh------HHHHHHHHHHHHHhcc---CCce-----eecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEe
Confidence 99855 8999999999999974 2333 3321 22345788999999999999 44 1233358
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh--
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK-- 588 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~-- 588 (841)
+||+|++++++|++.+ ..+.++++++.+.++++||++++|++++| ...++.+
T Consensus 215 ~n~~Ili~d~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al---~~l~l~k~~ 268 (529)
T CHL00093 215 ENPYILLTDKKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEAL---ATLVLNKLR 268 (529)
T ss_pred cCceehhhcCCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHH---HHHHHhhhc
Confidence 9999999999998532 24888999999999999999999933333 3344465
Q ss_pred --cCcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEc---------c
Q psy8873 589 --IKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISG---------I 647 (841)
Q Consensus 589 --~~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~ 647 (841)
++|++|++++ +++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++|++ |
T Consensus 269 g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~ 345 (529)
T CHL00093 269 GIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARC 345 (529)
T ss_pred ccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHH
Confidence 5999999984 58899999999999999 79999999999999999864 67888863 2
Q ss_pred CC------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy8873 648 QN------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703 (841)
Q Consensus 648 ~~------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~ 703 (841)
+. ++..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~ 424 (529)
T CHL00093 346 EQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSEN 424 (529)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHH
Confidence 21 22588899999999999999999999999999999998 999999999999999
Q ss_pred hhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy8873 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD-TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782 (841)
Q Consensus 704 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~ 782 (841)
|+ +++. +.++++|+++++|++||+.||++||+|||+|+.+++.+++
T Consensus 425 L~---------------------------------~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~ 471 (529)
T CHL00093 425 LK---------------------------------TWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQ 471 (529)
T ss_pred HH---------------------------------HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 98 6765 6889999999999999999999999999999999999997
Q ss_pred HHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 783 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 783 ~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.. +.++|||+.+|++.||++.|||||+.||.++|+.|+|+|++||+||++|+.+
T Consensus 472 ~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 525 (529)
T CHL00093 472 EQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDK 525 (529)
T ss_pred cc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 53 4579999999999999999999999999999999999999999999999864
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-77 Score=688.28 Aligned_cols=393 Identities=21% Similarity=0.310 Sum_probs=353.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.+.+.+++++
T Consensus 71 ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~t 148 (524)
T TIGR02348 71 LVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATI 148 (524)
T ss_pred HHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 78899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++++ +++++++++|+..+++ ++. |.|.. |+.. ++|++++|++|+++| ++. .||+.
T Consensus 149 s~~~~------~~l~~lv~~A~~~v~~---~~~-----i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~ 212 (524)
T TIGR02348 149 SANND------EEIGSLIAEAMEKVGK---DGV-----ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVE 212 (524)
T ss_pred hccCh------HHHHHHHHHHHHHhCc---CCc-----Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEE
Confidence 98764 8999999999999975 232 34443 5555 679999999999999 541 25888
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ ++++ ++.++++++.+.|++|||++++| ++.++++|..+
T Consensus 213 ~~n~~Ili~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvi~~~~i-----~~~al~~l~~n 263 (524)
T TIGR02348 213 LENPYILITDKKI-------------SNIK-----------DLLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVN 263 (524)
T ss_pred eeCceeeeccCCc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHh
Confidence 9999999999965 3443 36788999999999999999999 99999888865
Q ss_pred ------CcEEEecCCh-----hHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~~-----~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++. ++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|+++..+
T Consensus 264 ~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~ 340 (524)
T TIGR02348 264 KLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAI 340 (524)
T ss_pred hcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHH
Confidence 8999998854 8999999999999999 89999999999999999754 788899876542
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++|+++++| ||||||++|++
T Consensus 341 ~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~ 419 (524)
T TIGR02348 341 KARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLR 419 (524)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHH
Confidence 3479999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ + +.+.++++++++++|++||+.||++|++|||+|+.++++
T Consensus 420 ~s~~L~---------------------------------~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~ 465 (524)
T TIGR02348 420 AAAALE---------------------------------G-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAE 465 (524)
T ss_pred HHHHHH---------------------------------H-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999998 5 556788999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+|++. .+ ++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.
T Consensus 466 ~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 466 KVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred HHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 99864 22 4899999999999999999999999999999999999999999999975
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-76 Score=683.67 Aligned_cols=402 Identities=21% Similarity=0.316 Sum_probs=351.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|+.++||||||++||+++||+++.+++++|+||..|++||++|.+.+++.|++++.|++ + ++|.++|++
T Consensus 128 ll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~t 204 (600)
T PLN03167 128 LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAV 204 (600)
T ss_pred HHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999986 4 579999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +.|++|+++|+.++++ ++. |.+. .|++.+|+ ++++|++|+++| ++ ++|++.
T Consensus 205 S~~~~------~~i~~liaeAv~~Vg~---~g~-----i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~ 268 (600)
T PLN03167 205 SAGNN------YEVGNMIAEAMSKVGR---KGV-----VTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVE 268 (600)
T ss_pred hccCc------HHHHHHHHHHHHHhcc---CCc-----EEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEE
Confidence 99987 8999999999999974 232 3333 58888887 999999999999 44 278999
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH-h
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-K 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~-~ 588 (841)
++||+|+++++.+ +++++ +.++++.+.+.++++||++++|++++|+.++.+.++ .
T Consensus 269 l~np~Ill~d~~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~ 324 (600)
T PLN03167 269 YDNCKLLLVDKKI-------------TNARD-----------LIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGS 324 (600)
T ss_pred EeCCEEEEEcccc-------------CCHHH-----------HHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcccc
Confidence 9999999998754 55544 455667888899999999999944444444444444 7
Q ss_pred cCcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEE-----ecC--------eeEEEEE
Q psy8873 589 IKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIP-----AGN--------SRFVKIS 645 (841)
Q Consensus 589 ~~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~ 645 (841)
.+|++|++++ +++|+|||.+|||++++ +++++++++||+|+.|++.+ +|+ +++.+|+
T Consensus 325 ~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~ 404 (600)
T PLN03167 325 LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIK 404 (600)
T ss_pred ceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHH
Confidence 8999999996 88999999999999999 68899999999999999987 776 4788877
Q ss_pred ccC------------------CCCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhh
Q psy8873 646 GIQ------------------NPGRTLTVV-VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706 (841)
Q Consensus 646 ~~~------------------~~~~~~TIl-lrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~ 706 (841)
++. .+ +.+|++ +||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|+
T Consensus 405 ~~~~~~~~~~~~~~l~~Ri~~l~-g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~- 481 (600)
T PLN03167 405 NLIEAAEQDYEKEKLNERIAKLS-GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVD- 481 (600)
T ss_pred hhhhccCCHHHHHHHHHHHhhcC-CcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHH-
Confidence 643 23 345555 999999999999999999999999999999 99999999999999998
Q ss_pred cccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy8873 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY-CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH 785 (841)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~ 785 (841)
+++...++++|+ ++++|++||+.|||+||+|||+|+.+++.+|+..
T Consensus 482 --------------------------------~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~- 528 (600)
T PLN03167 482 --------------------------------AIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN- 528 (600)
T ss_pred --------------------------------HHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc-
Confidence 666666777775 4999999999999999999999999999999753
Q ss_pred hcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 786 AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 786 ~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+||++|+..
T Consensus 529 --~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~ 581 (600)
T PLN03167 529 --DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEI 581 (600)
T ss_pred --CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999999999999999999999999999999864
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=674.66 Aligned_cols=395 Identities=19% Similarity=0.288 Sum_probs=352.5
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++||++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+++.+++++
T Consensus 73 ll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~--~~~~l~~va~~ 150 (546)
T PRK14104 73 MVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT--SNDEIAQVGTI 150 (546)
T ss_pred HHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999999999997 45679999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~------~~m~~~ 509 (841)
++++| +.+++++++|+..+++ ++ .|.+.. +++. +++++++|++|+++| ++ +.|+..
T Consensus 151 s~~~d------~~i~~lv~~Av~~vg~---~g-----~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~ 214 (546)
T PRK14104 151 SANGD------AEIGKFLADAMKKVGN---EG-----VITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVE 214 (546)
T ss_pred HhcCc------hHHHHHHHHHHHHhcc---CC-----ceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCcee
Confidence 99988 8899999999999975 34 344443 2345 589999999999999 44 133677
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh-
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK- 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~- 588 (841)
+++|+|++++.. ++++ +++.++++++.+.|++|||++++| ++.++++|..
T Consensus 215 ~~~~~Ilv~d~~-------------i~~~-----------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~N 265 (546)
T PRK14104 215 MDDAYILINEKK-------------LSSL-----------NELLPLLEAVVQTGKPLVIVAEDV-----EGEALATLVVN 265 (546)
T ss_pred eeCcEEEEehhh-------------hcCH-----------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHhC
Confidence 889999988733 3444 237788999999999999999999 8888888873
Q ss_pred -----cCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 589 -----IKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 589 -----~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
.+|++|++++ +++|+|||.+|||+++++ ++++++++||+|+++++ ++++++++++|..+
T Consensus 266 k~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i 342 (546)
T PRK14104 266 RLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADI 342 (546)
T ss_pred cccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHH
Confidence 6899998887 899999999999999999 89999999999999884 77899999987663
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++
T Consensus 343 ~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~ 421 (546)
T PRK14104 343 EARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLR 421 (546)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHH
Confidence 5899999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ ++. ..++++++++++|++||+.||++|++|||+|+.+++.
T Consensus 422 ~s~~L~---------------------------------~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~ 467 (546)
T PRK14104 422 ASEQLK---------------------------------GIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVG 467 (546)
T ss_pred HHHHHH---------------------------------Hhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHH
Confidence 999998 443 3478899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+..| .+++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|..+
T Consensus 468 ~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~ 525 (546)
T PRK14104 468 KILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAEL 525 (546)
T ss_pred HHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998653 4579999999999999999999999999999999999999999999999653
|
|
| >KOG0363|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-75 Score=593.08 Aligned_cols=460 Identities=34% Similarity=0.526 Sum_probs=431.0
Q ss_pred eeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy8873 335 LLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414 (841)
Q Consensus 335 ~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~ 414 (841)
..|+.+..+..-+. ..--|..+++++.++-||.++|||||||++|+++||++|.+|+.+.+||+.|+.||++|...|++
T Consensus 56 v~VTNDGAtILksi-~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~e 134 (527)
T KOG0363|consen 56 VMVTNDGATILKSI-GVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALE 134 (527)
T ss_pred eEEecchHHHHHhc-CCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHH
Confidence 35565554443332 33346778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCc---cchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccccee
Q psy8873 415 ILTEMSTPITL---ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTEL 491 (841)
Q Consensus 415 ~L~~~s~~~~~---~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~l 491 (841)
.|.+.++.... .-+++|+++++|.++||+++...++|++|+++|+.++. +.-|++.|+|+|..||+++||++
T Consensus 135 aL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~~IqIIK~~Gg~l~dSfL 209 (527)
T KOG0363|consen 135 ALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK-----GSTNLEAIQIIKKLGGKLEDSFL 209 (527)
T ss_pred HHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCccceeeehhcCCccccccc
Confidence 99988874221 13789999999999999999999999999999999994 45577889999999999999999
Q ss_pred EEeEEEecCCCCCCCCceeecceEEEEEeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEec
Q psy8873 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQ 570 (841)
Q Consensus 492 i~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~ 570 (841)
-+|+++++.+.. +.|+.++|+||++-|.+++..+.+ +...+.+++...+.++...|++.+++++++|.+.|+|+.+..
T Consensus 210 DeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNR 288 (527)
T KOG0363|consen 210 DEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINR 288 (527)
T ss_pred cccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeh
Confidence 999999999854 679999999999999999999999 888899999999999999999999999999999999999999
Q ss_pred CCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 571 KSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 571 ~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
.-| .++-.++|...||+++.+.+.+-+||++.+||+.++++|++++...+|+|+.+++..+|++++++|++++..
T Consensus 289 QLi-----YnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~G 363 (527)
T KOG0363|consen 289 QLI-----YNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLG 363 (527)
T ss_pred hHh-----hcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccc
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCch
Q psy8873 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPE 730 (841)
Q Consensus 651 ~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (841)
..|||+|||+|++++||.+|++||||+++....++.+++.||||.||.++..+.
T Consensus 364 -eActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~------------------------- 417 (527)
T KOG0363|consen 364 -EACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVD------------------------- 417 (527)
T ss_pred -cceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHH-------------------------
Confidence 899999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcc
Q psy8873 731 IELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVV 810 (841)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~ 810 (841)
+++...++++..++++|++||..+|.+||.|+|||+.+++++||+.|+.|...+|+|.++|++.||.+.||+
T Consensus 418 --------~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~ 489 (527)
T KOG0363|consen 418 --------KEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIV 489 (527)
T ss_pred --------HHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhH
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.+|.+.+.+|.|++.||||+|.||+..
T Consensus 490 es~~vK~~vv~sasEaae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 490 ESLKVKQAVVSSASEAAEMILRVDNIIKAA 519 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999864
|
|
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=666.81 Aligned_cols=477 Identities=36% Similarity=0.579 Sum_probs=445.8
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
++|||.++.+.+.|... ...++.++.+..-+. ...+|+.+++.+.+++|+.++||||||+++|+++||+++.++
T Consensus 7 sslGP~G~~kli~~~~g-----~~~iTndg~tIl~~l-~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 7 SSLGPKGRDKLIVNDSG-----KIIITNDGATILKSL-KINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp CCSSTTS-EEEEEESSS-----SEEEESSHHHHHHHS-TBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCeEEEEcCCC-----CeEEEechhHHHHHh-hhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 47999998887877322 348899998887766 779999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNV 471 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~ 471 (841)
+++|+||..|++||+.|.+.+++.|++++++++..+ +.+.+++++++++|+.+.|.++|++++++|+ ...++ .+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~----~~ 154 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKS----NF 154 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTT----TH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHH-Hhhcc----cc
Confidence 999999999999999999999999999999887422 8999999999999999999999999999999 44331 27
Q ss_pred cccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHH
Q psy8873 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551 (841)
Q Consensus 472 d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~ 551 (841)
|++.+.++++.||+.+||++++|++|++++.+.+||+.+++|||++++++|++++. ++.++.++++++++.+.++|+++
T Consensus 155 ~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~ 233 (485)
T PF00118_consen 155 DLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKY 233 (485)
T ss_dssp HGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHH
T ss_pred cccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhh
Confidence 88889999999999999999999999999955489999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeE
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV 631 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v 631 (841)
++++++++.+.|+++|+++++| ++.++++|.+++|++++++++++|++||++|||++++++++++++++|+|+++
T Consensus 234 l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v 308 (485)
T PF00118_consen 234 LKKILEKIINLGVNLIISQKSI-----DDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSV 308 (485)
T ss_dssp HHHHHHHHHTTTSSEEEESSEB-----THHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEE
T ss_pred hccccceEeeeccceeeeeccc-----ccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999889999999
Q ss_pred EEEEecCeeEEEEE--ccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhccc
Q psy8873 632 EEIPAGNSRFVKIS--GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709 (841)
Q Consensus 632 ~~~~ig~~~~~~~~--~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~ 709 (841)
++..+++++|++|+ ++... +.+||+|||+++.+++|++|+++||+++++++++++++|||||++|++|+.+|+
T Consensus 309 ~~~~i~~~~~~~~~~~~~~~~-~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~---- 383 (485)
T PF00118_consen 309 EEREIGNKKYIFIEGIGCLSS-KICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALR---- 383 (485)
T ss_dssp EEEEETSSEEEEEEEHSESSS-SEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHH----
T ss_pred hhccccccccccccccccccc-CceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHH----
Confidence 99999999999999 46655 999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q psy8873 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE 789 (841)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~ 789 (841)
+++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.+.
T Consensus 384 -----------------------------~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~ 434 (485)
T PF00118_consen 384 -----------------------------KYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN 434 (485)
T ss_dssp -----------------------------HHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT
T ss_pred -----------------------------HhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc
Confidence 677778899999999999999999999999999999999999999886644
Q ss_pred CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCCC
Q psy8873 790 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTLN 841 (841)
Q Consensus 790 ~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 841 (841)
++|+|..+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|++++
T Consensus 435 -~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 435 -NYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp -TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred -ccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999875
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >KOG0362|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=605.71 Aligned_cols=477 Identities=29% Similarity=0.459 Sum_probs=445.4
Q ss_pred CCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHH
Q psy8873 310 GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAE 389 (841)
Q Consensus 310 ~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~ 389 (841)
-.+.||++++++.++|+.++ ..|+.+|-+.--+. ...||..++++++++.|+.+.||||+++|+|+++||++|+
T Consensus 42 ~rs~yGpng~nK~vvnh~~k-----~~~TndaatIlrel-ev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae 115 (537)
T KOG0362|consen 42 IRSAYGPNGRNKMVVNHLGK-----TFVTNDAATILREL-EVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAE 115 (537)
T ss_pred HHhhcCCCCcceeeecccce-----EEEcCChHHHHHHh-hccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHH
Confidence 34689999999999999887 47888888877766 8899999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc--CCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC
Q psy8873 390 KLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP--ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR 467 (841)
Q Consensus 390 ~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~--~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~ 467 (841)
+|+..|++|.+|++||+.|.+.+++.|+++.+. .+..|.+ ..+++++++| .+...+++++++++|+..+.+.
T Consensus 116 ~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~sk-q~~~ed~l~~lVa~ac~si~p~-- 189 (537)
T KOG0362|consen 116 ELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSK-QYGNEDFLTKLVAKACVSILPL-- 189 (537)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHh-hcchHHHHHHHHHHHHHhhccc--
Confidence 999999999999999999999999999998653 2222444 7888999988 5788999999999999999873
Q ss_pred CCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHH
Q psy8873 468 DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547 (841)
Q Consensus 468 ~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~ 547 (841)
+.|+.|+|+++|+.||+..+|+++.|++|++.. .+.++..+..||++++|+++...+++++++.+++++++.+|.+.
T Consensus 190 -~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~--eG~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKg 266 (537)
T KOG0362|consen 190 -MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDP--EGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKG 266 (537)
T ss_pred -ccccccceEEEEEecCCcccceeeEEEEecccc--CCcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccc
Confidence 449999999999999999999999999999995 34468888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee
Q psy8873 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS 627 (841)
Q Consensus 548 E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~ 627 (841)
|+..+...++.|...|+++|++.+.+ +++++|||++++|++++..++.||+|+|+..||++++++..+.++.+|+
T Consensus 267 Ee~lle~~vk~Ia~~gvkViV~~g~V-----~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~ 341 (537)
T KOG0362|consen 267 EEALLEEQVKAIADAGVKVIVSGGKV-----DEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGY 341 (537)
T ss_pred cHHHHHHHHHHHHhcCCeEEEecCcc-----chhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhc
Q psy8873 628 ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 707 (841)
Q Consensus 628 ~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~ 707 (841)
|++|...++|+.+++.|+.-...+++.|++|||+++..+|+.||+++|+++..+...++++++||+|++|++|+..|.
T Consensus 342 ~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~-- 419 (537)
T KOG0362|consen 342 CDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQIS-- 419 (537)
T ss_pred cceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHH--
Confidence 999999999999999998755445999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q psy8873 708 ADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 787 (841)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~ 787 (841)
+|+..++|.+|++++.|++||+.+||+|++|+|++..+++++|+..|.
T Consensus 420 -------------------------------~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~- 467 (537)
T KOG0362|consen 420 -------------------------------SRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ- 467 (537)
T ss_pred -------------------------------HhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-
Confidence 889999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEccCC-ccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 788 GETTTGINVRKG-AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 788 ~~~~~Gid~~~g-~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+..+.|+|+... ...|+.++||||.+..|.++++.|+|+|.++|++|+||+++
T Consensus 468 ~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 468 GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred CCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 445588888776 48999999999999999999999999999999999999986
|
|
| >KOG0364|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-73 Score=591.46 Aligned_cols=450 Identities=29% Similarity=0.482 Sum_probs=431.5
Q ss_pred HHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchH
Q psy8873 350 RSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRE 429 (841)
Q Consensus 350 ~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~ 429 (841)
..-||...-+.+.+.+||+++|||||||++|++|+|.++..++++|+||+.|+++|.+|++.++..+++++.|++..+..
T Consensus 69 ~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~ 148 (527)
T KOG0364|consen 69 DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQA 148 (527)
T ss_pred hhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHH
Confidence 44567777777999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccc-cceEEEEccCCccccceeEEeEEEecCC-CCCCCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL-KDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP 507 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~-~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~ 507 (841)
.++.++.++..+|+.+.|++.++.+..+|+.+++..+ +..||+ ++.++.|++||.+.+|++++|+.++++. || .|.
T Consensus 149 km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~-g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hp-kmr 226 (527)
T KOG0364|consen 149 KMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVEN-GREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHP-KMR 226 (527)
T ss_pred HHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhcc-CceechhhhccccccCcccccccceecceeeccccCcH-HHH
Confidence 9999999999999999999999999999999998753 236888 4999999999999999999999999999 77 899
Q ss_pred ceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH
Q psy8873 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587 (841)
Q Consensus 508 ~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~ 587 (841)
+.++||+++||+|+|+|.+.+.+..+.+...+++...++-|++++..+++.|....++||++++++ +++++|||.
T Consensus 227 r~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~-----sdla~hyl~ 301 (527)
T KOG0364|consen 227 RAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGV-----SDLAQHYLL 301 (527)
T ss_pred HHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccch-----hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 588 ~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+.||.+++++++.|-.|+++++||+++++.+++.+.+.|+ |+.+++.++|+++|.||..|..+ +.|||++|||+..++
T Consensus 302 k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p-kaCtillrg~skdil 380 (527)
T KOG0364|consen 302 KANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP-KACTILLRGPSKDIL 380 (527)
T ss_pred hcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-cceEEEeccCchhHH
Confidence 9999999999999999999999999999999999999995 88999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|.++||+.+.|+.+-+|+++||||++||.+|..|+ +.+...++
T Consensus 381 ~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~---------------------------------qksa~~~G 427 (527)
T KOG0364|consen 381 NEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELR---------------------------------QKSALMTG 427 (527)
T ss_pred HHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHH---------------------------------HHHhhccc
Confidence 999999999999999999999999999999999999998 66677889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
.+++.+.+.|.||+.+||+|++|||.+++..++.++..|..+...+|+|..+|.+.||.+.++|||+.+|.+..++|++.
T Consensus 428 VekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktaves 507 (527)
T KOG0364|consen 428 VEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVES 507 (527)
T ss_pred hhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
++++||||+|+..+
T Consensus 508 a~~LLRIddIvsg~ 521 (527)
T KOG0364|consen 508 ACLLLRIDDIVSGK 521 (527)
T ss_pred HHHHHhhhceeeee
Confidence 99999999998753
|
|
| >KOG0361|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-72 Score=572.73 Aligned_cols=347 Identities=35% Similarity=0.566 Sum_probs=332.4
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
|.+.|..+..+||.+|..+++++||||||+||||+|++..|+.+|+|||+||+|.+++.||+||++
T Consensus 14 d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDG 93 (543)
T KOG0361|consen 14 DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDG 93 (543)
T ss_pred CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCC
Confidence 557789999999999999999999999999999999999999999999999999999999988763
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~ 173 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKE 173 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------------------------------------------cc
Q psy8873 85 ------------------------------------------------------------------------------DH 86 (841)
Q Consensus 85 ------------------------------------------------------------------------------~~ 86 (841)
+.
T Consensus 174 fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNA 253 (543)
T KOG0361|consen 174 FFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNA 253 (543)
T ss_pred HHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCc
Confidence 24
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++++++.++|+.+.+.||+.+.+.+++|.++|+++|+..-. |.|+|.|||.+++|.|.++++.+||.|+..++|+
T Consensus 254 EiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLp-----IGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGG 328 (543)
T KOG0361|consen 254 EIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLP-----IGDLATQYFADRDIFCAGRVPEEDLNRVMQACGG 328 (543)
T ss_pred eeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEeccc-----chHHHHHHhhccCceecCcCCHHHHHHHHHhcCc
Confidence 78889999999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
.+.++..++.++.||+|..|+++++|++||.+|+||+.. +.||++|||+.+++++|.+|++|||++++|.|+++..+|+
T Consensus 329 si~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a-ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVa 407 (543)
T KOG0361|consen 329 SIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA-KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVA 407 (543)
T ss_pred chhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc-ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEee
Confidence 999999999999999999999999999999999999974 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~ 326 (841)
|||+.||++|++|++|+.++.|++|+.+.+|++|||.|||+||+|||+|+.+++++||.+|++|+.|||+|..++.+.|+
T Consensus 408 GGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn 487 (543)
T KOG0361|consen 408 GGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADN 487 (543)
T ss_pred CCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCC
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAG 371 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~G 371 (841)
++.+||||..||.+|++.|+|+||+++.+|..|+.....++.+.+
T Consensus 488 ~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~ 532 (543)
T KOG0361|consen 488 FEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSA 532 (543)
T ss_pred HHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCc
Confidence 999999999999999999999999999999999877655554433
|
|
| >KOG0360|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-70 Score=573.65 Aligned_cols=481 Identities=29% Similarity=0.481 Sum_probs=442.3
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+++||-+..+..+|-+.. +.++.+..+..... ..-||..+++++.++.|+.++|||||+|++++++||+++.+|
T Consensus 37 ss~GPvGldKmlvdd~Gd-----vt~TndgAtiL~~l-~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~L 110 (545)
T KOG0360|consen 37 SSLGPVGLDKMLVDDIGD-----VTITNDGATILSLL-EVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADEL 110 (545)
T ss_pred hccCccchhhhccccccc-----eEEeccHHHHHHhh-hhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHh
Confidence 467777666776665442 35565554443333 567899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcC--CCCC
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVN--PQRD 468 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~--~~~~ 468 (841)
+..++||+.|++||+.|+..+++++.+ ++.|++...++.|.++++|++++|+.....++|+.++++|+..+.- .+..
T Consensus 111 v~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge 190 (545)
T KOG0360|consen 111 VKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGE 190 (545)
T ss_pred hcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCc
Confidence 999999999999999999999999975 6789998899999999999999999999999999999999997742 2344
Q ss_pred CcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHH
Q psy8873 469 TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEE 548 (841)
Q Consensus 469 ~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E 548 (841)
..+.+..+.|.|.+|.+..||.+++|+.++....+..||+.+.|+||++|++.|...+..+.-.+.+.++++++++.+.|
T Consensus 191 ~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e 270 (545)
T KOG0360|consen 191 PHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQRE 270 (545)
T ss_pred eeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHH
Confidence 56778899999999999999999999999999977799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCC------CCC
Q psy8873 549 RAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDH------FLP 622 (841)
Q Consensus 549 ~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~------l~~ 622 (841)
....++.+++|...|+|+|+++++| ||+++.||.++++++|||+.+++|++|+++||+++++++.+ +.+
T Consensus 271 ~~itkeRi~kIl~~ganvVLtt~gI-----ddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~ 345 (545)
T KOG0360|consen 271 QDITKERIKKILATGANVVLTTGGI-----DDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEP 345 (545)
T ss_pred hHhHHHHHHHHHhcCCcEEEEcCCc-----cHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccCh
Confidence 9999999999999999999999999 99999999999999999999999999999999999999874 567
Q ss_pred CCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy8873 623 EHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702 (841)
Q Consensus 623 ~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~ 702 (841)
..+|+|+.|.+.+|+++.++++.+.+. ..++|+|||++++.+||++|++|||++++|..++++++||||||+|.+|+.
T Consensus 346 ~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~ 423 (545)
T KOG0360|consen 346 ASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSI 423 (545)
T ss_pred hhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHH
Confidence 789999999999999999999998765 489999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy8873 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782 (841)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~ 782 (841)
+|+ +|+.+...++++++..|+.||.++|++|+.|++.|+.+++++++
T Consensus 424 yle---------------------------------~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lr 470 (545)
T KOG0360|consen 424 YLE---------------------------------NFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLR 470 (545)
T ss_pred HHH---------------------------------hhcccCccHHHHHHHHHHHHHhcchHHHhhhhcccccccccccc
Confidence 999 77888889999999999999999999999999999999999999
Q ss_pred HHHhcC--------CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhc
Q psy8873 783 NRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVN 838 (841)
Q Consensus 783 ~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~ 838 (841)
..|+.. ..++|.|+.+|++.|.++.|+++|..+|...|+.|+|.+.+|||||++|.
T Consensus 471 a~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~ 534 (545)
T KOG0360|consen 471 AYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIK 534 (545)
T ss_pred CCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhh
Confidence 999742 13899999999999999999999999999999999999999999999985
|
|
| >KOG0359|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=537.14 Aligned_cols=467 Identities=28% Similarity=0.434 Sum_probs=439.6
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~ 403 (841)
..|...| ++-.+.++|+=....+. ...+|+.-+|...+..|+...||||||+|+|+|+|+++|..++..|+||..|..
T Consensus 43 ~Kmlvsg-agdIklakdgnvLl~em-QiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~ 120 (520)
T KOG0359|consen 43 EKMLVSG-AGDIKLAKDGNVLLKEM-QIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITE 120 (520)
T ss_pred HHhccCC-ccceEEEecchhhHHHH-hhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhh
Confidence 3444444 56678888887777777 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccC
Q psy8873 404 AFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483 (841)
Q Consensus 404 g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~G 483 (841)
||+.|.+.++++|+..+.++ +++.|..+++|++++|....-.+.+++++++|+..+.+ .+..+|+.+++|.+...
T Consensus 121 gfe~a~~~~l~~L~k~~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~--~~~~idl~mveim~mq~ 195 (520)
T KOG0359|consen 121 GFEAAKNKALEFLEKVSREV---DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR--QEEPIDLFMVEIMEMQH 195 (520)
T ss_pred HHHHHHHHHHhhhhccccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc--CCCCcchhHHHhhhhcc
Confidence 99999999999999877776 57899999999999999999999999999999999873 35678999999999999
Q ss_pred CccccceeEEeEEEecCC-CCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8873 484 GTVEDTELVDGLVFTQKS-ANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKA 562 (841)
Q Consensus 484 g~~~dS~li~G~v~~~~~-~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~ 562 (841)
++..|+.+++|++++++. || .||+.++|+-|+++|.+|||.+++.++-+.+++++|.+.+...|++++.+.+.+|+++
T Consensus 196 ~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiiel 274 (520)
T KOG0359|consen 196 KSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIEL 274 (520)
T ss_pred CchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 88 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----cEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC
Q psy8873 563 GC----NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN 638 (841)
Q Consensus 563 g~----~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~ 638 (841)
+. -+||.+++| ++..++.|.++||+++||.++..|||+..+||+..+.++++++|+.+|+|+.|++.++|+
T Consensus 275 k~~vc~fvvinqkGi-----dp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE 349 (520)
T KOG0359|consen 275 KRKVCEFVVINQKGI-----DPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE 349 (520)
T ss_pred hhhcceEEEecccCC-----CCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc
Confidence 74 378889999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhh
Q psy8873 639 SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 718 (841)
Q Consensus 639 ~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~ 718 (841)
++|+|+++|+++ +.|||+++||+.+.+.+++++++|++++++++++++.++||+|++|..++.+|+
T Consensus 350 EkfTFIE~~~~p-~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr------------- 415 (520)
T KOG0359|consen 350 EKFTFIEKCNNP-SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLR------------- 415 (520)
T ss_pred eeeEeeecCCCC-cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHH-------------
Confidence 999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccC
Q psy8873 719 FRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 798 (841)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~ 798 (841)
...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|..+ ..|+|+.+
T Consensus 416 --------------------~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~ 473 (520)
T KOG0359|consen 416 --------------------ESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFR 473 (520)
T ss_pred --------------------HhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hccccccc
Confidence 56667889999999999999999999999999999999999999988765 45999999
Q ss_pred CccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 799 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 799 g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|+..++...||||.+.||++.|.+++-.|+.||-+|+|+++
T Consensus 474 g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 474 GEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred CCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999975
|
|
| >KOG0363|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=495.17 Aligned_cols=346 Identities=33% Similarity=0.565 Sum_probs=327.4
Q ss_pred chhh---hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccC--CCceEEeccHHHHHhhhcccccccccc-----
Q psy8873 15 SAFK---DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQAS--NGEVTITNDGATILKQMNVIHPAAKMM----- 84 (841)
Q Consensus 15 ~~~k---~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~--~g~~~itnDg~ti~k~~~~~~p~ak~~----- 84 (841)
++|| ..++|+.||++.+-|+.+++|.||+|||||||+||+... .|.+.+||||+||+|++.+++|+||.+
T Consensus 5 ~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~ 84 (527)
T KOG0363|consen 5 QIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISK 84 (527)
T ss_pred hhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecccc
Confidence 3455 456799999999999999999999999999999999864 578999999999999999999988864
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 85 vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~S 164 (527)
T KOG0363|consen 85 VQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSS 164 (527)
T ss_pred ccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 165 KiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mDtDKv 244 (527)
T KOG0363|consen 165 KILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKV 244 (527)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCcccce
Confidence
Q ss_pred ---ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 85 ---DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 85 ---~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
.+.+++++..++..+...|++.|++.+++|.+.|+|+.|. |+-|.+...|+|...||+++.+..++-++|++
T Consensus 245 KvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN-----RQLiYnyPeqLf~dagi~aIEHADFdGiERLa 319 (527)
T KOG0363|consen 245 KVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN-----RQLIYNYPEQLFADAGIMAIEHADFDGIERLA 319 (527)
T ss_pred eeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee-----hhHhhcCHHHHHhhcCcceeecccchhHHHHh
Confidence 1366777888888889999999999999999999999864 45699999999999999999999999999999
Q ss_pred HHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 162 KTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
.+||+.+++++|++...+||+|+.+++..+|++++.+|+||+. |..|||+|||+|+++|||.||++|||||++...++|
T Consensus 320 lvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~e 398 (527)
T KOG0363|consen 320 LVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKE 398 (527)
T ss_pred hcccceeeeccCCcchhccccchhhHHHhcCccceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~ 321 (841)
.+++.|||++||.+++.+.+++...+|++..++.+|++||..+|.+||+|||||+.+++++||+.|.+|++++|+|.++|
T Consensus 399 srvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G 478 (527)
T KOG0363|consen 399 SRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNG 478 (527)
T ss_pred ceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 322 ~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.+.||.+.||+|+++||+..+.+|.|++.++|++|.+|..+|...
T Consensus 479 ~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r 523 (527)
T KOG0363|consen 479 EIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRER 523 (527)
T ss_pred chhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccc
Confidence 999999999999999999999999999999999999998887654
|
|
| >KOG0362|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=497.36 Aligned_cols=348 Identities=31% Similarity=0.507 Sum_probs=327.4
Q ss_pred CCCcccchhhhhcc----chHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc
Q psy8873 9 SKNSKSSAFKDKSK----ATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84 (841)
Q Consensus 9 ~~~~~~~~~k~~~~----~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~ 84 (841)
|..++.+++|++.+ -+++..+|+.+|+.+++.+||+|||.|||||++|+.|+.++|||++||+++++++||+||++
T Consensus 6 p~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakll 85 (537)
T KOG0362|consen 6 PKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLL 85 (537)
T ss_pred CCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHH
Confidence 45588889998755 37899999999999999999999999999999999999999999999999999999988874
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 86 v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~ 165 (537)
T KOG0362|consen 86 VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIM 165 (537)
T ss_pred HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 166 skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~ 245 (537)
T KOG0362|consen 166 SKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQ 245 (537)
T ss_pred HhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCCcccccccceeEEEecCCCccc
Confidence
Q ss_pred ---ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 85 ---DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 85 ---~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
++++.+++++++..+.+.|+..+..+++.|...|++++++.+. ++++++|||++++|++++..++.||+|+|
T Consensus 246 TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~-----V~em~Lhflnky~ImVlqi~Sk~eLrrlc 320 (537)
T KOG0362|consen 246 TETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGK-----VDEMTLHFLNKYKIMVLQINSKFDLRRLC 320 (537)
T ss_pred ccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCc-----cchhhhhhhccccEEEEEeccHhhHHHHH
Confidence 2466788999999999999999999999999999999999887 89999999999999999999999999999
Q ss_pred HHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 162 KTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+..||++.+++..+.++.+|+|+++...++|+++++.|......+.++||+|||+|...||+.||+++|++++++..+++
T Consensus 321 rtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d 400 (537)
T KOG0362|consen 321 RTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSD 400 (537)
T ss_pred HHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccC
Confidence 99999999999999999999999999999999999999765444578999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~ 321 (841)
++++||+|++|++|++.|.+|...++|.+|++|+.|++||+.+||+||||||+++.+++++|++.|. ++.+.|+|....
T Consensus 401 ~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e 479 (537)
T KOG0362|consen 401 SRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAE 479 (537)
T ss_pred CccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 455678887766
Q ss_pred -ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhh
Q psy8873 322 -AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVEL 362 (841)
Q Consensus 322 -~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ 362 (841)
...|+.+.||||-+.+|.||++.|+++|+++|++|++|+..
T Consensus 480 ~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 480 GGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred ccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 59999999999999999999999999999999999999753
|
|
| >KOG0357|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=446.35 Aligned_cols=335 Identities=36% Similarity=0.613 Sum_probs=298.9
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccH-HHHHhhhcccc-ccccccc-----------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDG-ATILKQMNVIH-PAAKMMD----------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg-~ti~k~~~~~~-p~ak~~~----------- 85 (841)
...+|.++..++|-+.+++|.+.+|||||+||+|++..+.|++++|||| .+|++-|.+.| |..-++.
T Consensus 22 ~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndgd~~IakLmv~LS~sqd~eIgdGtTgVvvLa~ 101 (400)
T KOG0357|consen 22 DRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDGVHQIAKLIVILSKSQDDEIGDGTTGVVVLAG 101 (400)
T ss_pred chhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeeccchHHHHHHHHhcccchhhhccCCcccEEecc
Confidence 4566899999999999999999999999999999999999999999987 47888777644 3222220
Q ss_pred --------------cceeecCHH---------HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh
Q psy8873 86 --------------HKVVVSDYS---------AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142 (841)
Q Consensus 86 --------------~~~~i~~~~---------~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~ 142 (841)
+++.+.+-- .++.+.+ + -.+.+++++++++|+++++|+|+ ++|.|.|+|.
T Consensus 102 alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~-~-~ef~emi~~vK~~ga~l~icqwg-----fddeanhll~ 174 (400)
T KOG0357|consen 102 ALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISD-P-FEFEEMIQQIKETGANLAICQWG-----FDDEANHLLL 174 (400)
T ss_pred cchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcc-c-ccHHHHHHHHHhhCCcEEEEecc-----cCchhhhHHh
Confidence 122221110 1111110 0 11788999999999999999999 6999999999
Q ss_pred hhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecC--CceEEEEEcccCCCCeEEEEEcccchhh
Q psy8873 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQNPGRTLTVVVRGSNKLV 220 (841)
Q Consensus 143 ~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig--~~~~~~~~g~~~~~~~~tI~lrG~t~~~ 220 (841)
+++.|+++|+...+++.||.+||++++++++++++++||+|+.+++..+| ++++..++.|+++ +..||.+||++..+
T Consensus 175 ~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-kaVTifvRg~Nkmi 253 (400)
T KOG0357|consen 175 QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-KAVTIFVRGGNKMI 253 (400)
T ss_pred hcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCC-ceEEEEEecCccee
Confidence 99999999999999999999999999999999999999999999999998 6899999999996 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q psy8873 221 LDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 300 (841)
Q Consensus 221 l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~ 300 (841)
++|.||++|||||++|++++|.++|+|||++|+.||-.+.+.++.++|.|||++++|++||++||-.||||+|++|++.+
T Consensus 254 i~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~l 333 (400)
T KOG0357|consen 254 IEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETL 333 (400)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-CCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 301 TELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 301 ~~l~~~~~-~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
+++++++- .++.++|+|+.-....||.+.+++||+..|++.+..||..+.++|++|++++.
T Consensus 334 s~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~ 395 (400)
T KOG0357|consen 334 SDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKP 395 (400)
T ss_pred hHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecC
Confidence 99998874 46688999999989999999999999999999999999999999999998753
|
|
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=503.07 Aligned_cols=267 Identities=36% Similarity=0.622 Sum_probs=255.4
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.++++++++.+.++|++++.++++++.+.++++|+++++ +++.++++|.++||.+++++++.+|+++|++|||+
T Consensus 215 ~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~-----i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ 289 (485)
T PF00118_consen 215 IRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKS-----IDDEALQYLNKNGILVIRRVSKEDLERIARATGAS 289 (485)
T ss_dssp EEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSE-----BTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSB
T ss_pred cchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecc-----cccccchhhhhhhhhccccchHHHHHhhhcccCCc
Confidence 4566778899999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEE--cccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS--GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~--g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
+++++++++++.+|+|+.++++.+++++|++|+ ++.. +..+||+|||+|+.+++|.||+++||+++++++++++++|
T Consensus 290 ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 368 (485)
T PF00118_consen 290 IISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLS-SKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVV 368 (485)
T ss_dssp EBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESS-SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEE
T ss_pred Eecccccccchhhhhhhhhhhcccccccccccccccccc-cCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCcee
Confidence 999999999999999999999999999999999 4665 4899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++|++|+.+|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++. ++|+|..+|++.|
T Consensus 369 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~ 447 (485)
T PF00118_consen 369 PGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVD 447 (485)
T ss_dssp ETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEE
T ss_pred ecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceec
Confidence 999999999999999999999999999999999999999999999999999999999999886555 8999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|.+.|||||+.+|+++++.|+++|+++|++|++|+.
T Consensus 448 ~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~ 483 (485)
T PF00118_consen 448 MKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA 483 (485)
T ss_dssp TTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999864
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >KOG0360|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=455.12 Aligned_cols=342 Identities=34% Similarity=0.555 Sum_probs=321.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
+...|+..|..|..|+..++++||+||||-|+|||+++..|.+.+||||+||++.++++||++|.+
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 567789999999999999999999999999999999999999999999999999999999987653
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~ 172 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFT 172 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------c
Q psy8873 85 -------------------------------------------------------------------------------D 85 (841)
Q Consensus 85 -------------------------------------------------------------------------------~ 85 (841)
.
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 0
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
-.+.++||++++.+...|....++.+++|.+.|+|+|+++++ |+|++++||.++|+++++++++++|++||++||
T Consensus 253 v~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~g-----Iddmc~K~~veagamAVrR~~k~dlk~iakatG 327 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGG-----IDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATG 327 (545)
T ss_pred ceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCC-----ccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhC
Confidence 245889999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CeEeeccc------ccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8873 166 TRPIASLD------HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 239 (841)
Q Consensus 166 a~~i~~l~------~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~ 239 (841)
+++++++. .+.+..+|+|+.|.+..|+++.++.+.|.+. ..|.|+|||++.+.+||+||++|||++++++.+
T Consensus 328 at~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtL 405 (545)
T KOG0360|consen 328 ATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTL 405 (545)
T ss_pred CeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHh
Confidence 99999987 4567889999999999999999999998774 389999999999999999999999999999999
Q ss_pred hcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC--------CC
Q psy8873 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GE 311 (841)
Q Consensus 240 ~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~--------~~ 311 (841)
+++.+|||||++|.+++-+|++|+.+...+||.++.-|+.||.+||++|+-||+.|+.++++++|+.|+. .-
T Consensus 406 es~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~ 485 (545)
T KOG0360|consen 406 ESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLL 485 (545)
T ss_pred ccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999952 23
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd 367 (841)
.++|.|..+|.+.|.++.|+++|..+|...++.|++++..+|++|+++.-.+..+.
T Consensus 486 k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 486 KQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred hhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 57999999999999999999999999999999999999999999999987665553
|
|
| >KOG0358|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=440.18 Aligned_cols=336 Identities=64% Similarity=0.994 Sum_probs=305.4
Q ss_pred chHHHHHHHHHHHHHHhHhhhcccccccc--cccccCCCceEEeccHHHHHhhhccccccccccccceeecCHHHHHHHH
Q psy8873 23 ATDIRNSNIGAAKAVADAIRTSLGPRGMD--KMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVL 100 (841)
Q Consensus 23 ~~~~~~~~i~~~~~la~~v~~tlGP~G~~--k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~ 100 (841)
.....+++|+.++.+++.|..|=--+|.- .=..+..|.-.|.+ +..-+-.+.+.-|...| ..++.++|+.+|++++
T Consensus 194 ~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriek-AkIglIQF~iS~PKtdm-en~iiv~DyaqMdril 271 (534)
T KOG0358|consen 194 ATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEK-AKIGLIQFQISPPKTDM-ENQIIVNDYAQMDRIL 271 (534)
T ss_pred ccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhh-ceeeEEEEEecCCCCCc-ccceEecCHHHHHHHH
Confidence 35567889999999999998885445542 11111223333332 33334456667788887 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCC
Q psy8873 101 KEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180 (841)
Q Consensus 101 ~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~l 180 (841)
+.|++|+.+++++|+++|+||+++|++|-|++++|+|+|||.+.+|++++++.+++++.+|+.+|+++++++++++++.|
T Consensus 272 keER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~L 351 (534)
T KOG0358|consen 272 KEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKL 351 (534)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeec-CCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhh
Q psy8873 181 SSADLVEEIPA-GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 259 (841)
Q Consensus 181 G~~~~~~~~~i-g~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L 259 (841)
|+++.+++..- |+.+++.+.|+.++|.+++|++||++..+++|.+|++|||||++|++++...++||||+.||+++..|
T Consensus 352 g~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L 431 (534)
T KOG0358|consen 352 GSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRL 431 (534)
T ss_pred CcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHH
Confidence 99999998844 55599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeec
Q psy8873 260 TKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVST 339 (841)
Q Consensus 260 ~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~ 339 (841)
..++++..|.++|++++|++|||.||.|||||||++|..++++||++|++|+.++|+|.++|.+.|+++..|+.|+.|..
T Consensus 432 ~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~ 511 (534)
T KOG0358|consen 432 SALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSI 511 (534)
T ss_pred HHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhhhHHh
Q psy8873 340 SAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 340 ~al~~a~~~a~~il~i~~ii~ 360 (841)
++++.|+|++.++|+||+++.
T Consensus 512 SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 512 SAITLATETVRSILKIDDIVN 532 (534)
T ss_pred HHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999874
|
|
| >KOG0364|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=452.79 Aligned_cols=339 Identities=32% Similarity=0.528 Sum_probs=321.2
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
....|..++..||++.+++||.+||+|||+.|.||+.++.|.+..||||..|++++++.||+|+-+
T Consensus 13 ~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdg 92 (527)
T KOG0364|consen 13 KRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 92 (527)
T ss_pred CcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCC
Confidence 445688899999999999999999999999999999999999999999999999999999976521
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 ttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~ 172 (527)
T KOG0364|consen 93 TTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICN 172 (527)
T ss_pred ceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhh
Confidence
Q ss_pred ----------------------------------------------------------------------------ccce
Q psy8873 85 ----------------------------------------------------------------------------DHKV 88 (841)
Q Consensus 85 ----------------------------------------------------------------------------~~~~ 88 (841)
.+.+
T Consensus 173 lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnv 252 (527)
T KOG0364|consen 173 LALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNV 252 (527)
T ss_pred HHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccce
Confidence 1244
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeE
Q psy8873 89 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 168 (841)
Q Consensus 89 ~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~ 168 (841)
++...+++.++++.|++++..+.+.|...++++|+++++ ++|+|+|||.+.|++++++.++.|-.|+|+++||++
T Consensus 253 e~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG-----~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~i 327 (527)
T KOG0364|consen 253 EIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKG-----VSDLAQHYLLKANITAIRRLRKTDNNRIARACGARI 327 (527)
T ss_pred eeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccc-----hhHHHHHHHHhcCchhhhhhhccccchhhhhcCcee
Confidence 555556778889999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred eecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 169 IASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 169 i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
+++.+++.+.+.|+ |+.|+.+.+|++.|++|..|+.| +.|||++||+|..+|+|++|.+.||+.+.|+.+.+++++||
T Consensus 328 v~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p-kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPG 406 (527)
T KOG0364|consen 328 VNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP-KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPG 406 (527)
T ss_pred ccChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCC
Confidence 99999999999996 88999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
|||+||.+|..|.+.+...+|.+|+.+.+++.||+.+||+|++|+|.++...++.+++.|..|...+|+|+++|.++||.
T Consensus 407 GGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~ 486 (527)
T KOG0364|consen 407 GGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMV 486 (527)
T ss_pred ccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeee
Confidence 99999999999999889999999999999999999999999999999999999999999999989999999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.++|+|..||.+..+.|.++++++|++|+++....
T Consensus 487 ~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 487 ELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred eccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 999999999999999999999999999999886443
|
|
| >KOG0357|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=430.95 Aligned_cols=321 Identities=39% Similarity=0.659 Sum_probs=304.8
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
++|.+++...+..|+.+.|||||.+++|++.+++++.+++.+|+||..|.+||..+...+.+.|++++-+++
T Consensus 72 ~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e-------- 143 (400)
T KOG0357|consen 72 HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE-------- 143 (400)
T ss_pred hHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc--------
Confidence 478888999999999999999999999999999999999999999999999999999999999988776653
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+.+.++++++.|+++++|+|++ +|.+.|+|.+++..
T Consensus 144 ---------------------------------------f~emi~~vK~~ga~l~icqwgf-----ddeanhll~~n~lp 179 (400)
T KOG0357|consen 144 ---------------------------------------FEEMIQQIKETGANLAICQWGF-----DDEANHLLLQNNLP 179 (400)
T ss_pred ---------------------------------------HHHHHHHHHhhCCcEEEEeccc-----CchhhhHHhhcCCC
Confidence 3456888999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
+||||.-.++|.||.+||++++++|++++++.||+++.|++.++|. +++..+++|+++ +.+||.+||.+..+++|.+
T Consensus 180 avrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-kaVTifvRg~Nkmii~Eak 258 (400)
T KOG0357|consen 180 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-KAVTIFVRGGNKMIIEEAK 258 (400)
T ss_pred ceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCC-ceEEEEEecCcceeHHHHH
Confidence 9999999999999999999999999999999999999999999985 899999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|++|||||++|++++|.++|+|||++|+.||-.+. +.+..+++.+||
T Consensus 259 rslhdalCvirnlird~rivYgGGaaEiscslav~---------------------------------~ead~~~g~eqy 305 (400)
T KOG0357|consen 259 RSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS---------------------------------QEADKIPGIEQY 305 (400)
T ss_pred HHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhh---------------------------------HhhccCCcHHHH
Confidence 99999999999999999999999999999999998 778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRS 829 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~ 829 (841)
++++||+||++||..|++|+|++|++.++++++.+-. .++.+|+|+--..-.||.+.+|+|++..|++.+..|++++.|
T Consensus 306 a~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrM 385 (400)
T KOG0357|consen 306 AFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRM 385 (400)
T ss_pred HHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754 567999999888889999999999999999999999999999
Q ss_pred HHchhhhhcC
Q psy8873 830 ILKIDDIVNT 839 (841)
Q Consensus 830 iL~iD~iI~~ 839 (841)
||+||+|+.+
T Consensus 386 iLKiddv~~~ 395 (400)
T KOG0357|consen 386 ILKIDDVRKP 395 (400)
T ss_pred hhhccceecC
Confidence 9999999864
|
|
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-53 Score=488.89 Aligned_cols=286 Identities=67% Similarity=1.081 Sum_probs=272.0
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
+.++.|..++ ..++.+.++++++.++++|+++++++++++.+.|+|||+++++|++++++++++|||.++||.++++++
T Consensus 230 ~~Le~~~~~~-~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~ 308 (517)
T TIGR02342 230 FQISPPKTDM-ENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIE 308 (517)
T ss_pred cCCCCCcccc-cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCC
Confidence 3344444443 678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALC 233 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~ 233 (841)
+++|+|||++|||+++++++++++++||+|+.|+++++++++++++++|+.+++.|||+|||+|+.+++|.||+++||++
T Consensus 309 ~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~ 388 (517)
T TIGR02342 309 REEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALC 388 (517)
T ss_pred HHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcc
Q psy8873 234 VVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313 (841)
Q Consensus 234 ~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~ 313 (841)
+++++++++++|||||++||+++.+|++++++.++.+|+++++|++||+.|||+||+|||+|+.+++.+|+..|++++.+
T Consensus 389 ~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 468 (517)
T TIGR02342 389 VIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKY 468 (517)
T ss_pred HHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCc
Confidence 99999999889999999999999999999888999999999999999999999999999999999999999999877788
Q ss_pred eeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 314 ~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 469 ~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~ 515 (517)
T TIGR02342 469 AGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVF 515 (517)
T ss_pred cceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceee
Confidence 99999999999999999999999999999999999999999999875
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-53 Score=488.19 Aligned_cols=286 Identities=71% Similarity=1.136 Sum_probs=271.0
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
++++.|..++ ..++.++++++++.++++|+++++++++++++.|+|||+++++|+++++++++++||.++||.++++++
T Consensus 229 ~~le~~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~ 307 (515)
T cd03338 229 FCLSPPKTDM-DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIE 307 (515)
T ss_pred cccccccccc-CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCC
Confidence 3333333333 567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALC 233 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~ 233 (841)
+++|+|||++|||+++++++++++++||+|+.|+++++|+++|++|++|+.++++|||+|||+|+.+++|.||+++||++
T Consensus 308 ~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~ 387 (515)
T cd03338 308 REEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALC 387 (515)
T ss_pred HHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998645899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcc
Q psy8873 234 VVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313 (841)
Q Consensus 234 ~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~ 313 (841)
++++++++|++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|+..|++++.+
T Consensus 388 ~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~ 467 (515)
T cd03338 388 VIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKN 467 (515)
T ss_pred HHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999877778
Q ss_pred eeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 314 ~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++|+
T Consensus 468 ~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 468 AGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred cceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999885
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=478.98 Aligned_cols=273 Identities=29% Similarity=0.505 Sum_probs=263.5
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
...+.+++++++..+.++|+++++++++.|++.|+++++++++ |++.+++||.++||++++++++++++|||++|
T Consensus 255 ~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~-----I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~t 329 (533)
T PTZ00212 255 GAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQL-----IYNYPEQLFAEAGIMAIEHADFDGMERLAAAL 329 (533)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCC-----ccHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|++..+|+++|++|+||..+ ++|||+|||+|+.+++|.||+++||++++|+++++|++
T Consensus 330 Ga~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~v 408 (533)
T PTZ00212 330 GAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKG-EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRV 408 (533)
T ss_pred CCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCC-CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.++..++|+|+.+|.+.
T Consensus 409 VpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~ 488 (533)
T PTZ00212 409 VLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVG 488 (533)
T ss_pred eeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCccc
Confidence 99999999999999999998899999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|...+
T Consensus 489 d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 489 DMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred chhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 999999999999999999999999999999999998754
|
|
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=476.51 Aligned_cols=273 Identities=28% Similarity=0.485 Sum_probs=263.6
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.+++++++..+.+.|+++++++++.|++.|++++++++. |++.+++||.++||++++++++++|+|||++|
T Consensus 243 ~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~-----I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~t 317 (517)
T cd03336 243 GAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQL-----IYNYPEQLFADAGIMAIEHADFDGVERLALVT 317 (517)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCC-----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|++..+|+++|++|+||+.+ ++|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 318 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 318 GGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG-EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred CCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCC-ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 476 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVG 476 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999987778899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+..+
T Consensus 477 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 477 DMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred chhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999999999999997643
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=478.66 Aligned_cols=273 Identities=30% Similarity=0.509 Sum_probs=262.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++++++++|.+.|++||+++++ ++++++|||.++||++++++++++|+|||++|
T Consensus 249 ~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~-----I~dla~~~l~~~~I~av~~v~~~~LerIa~~t 323 (525)
T TIGR02344 249 QTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG-----VSDLAQHYLLKANISAIRRVRKTDNNRIARAC 323 (525)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----ccHHHHHHHhHCCceEEecCCHHHHHHHHHHh
Confidence 3567788899999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+ |+.|+++++++++|++|+||+.+ .+|||+|||+|+.+++|+||+++||++++++++++++
T Consensus 324 Ga~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~ 402 (525)
T TIGR02344 324 GATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPK 402 (525)
T ss_pred CCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999 99999999999999999999875 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~ 322 (841)
+|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|+..|+++ ..++|+|+.+|.
T Consensus 403 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 482 (525)
T TIGR02344 403 LLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGK 482 (525)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCc
Confidence 9999999999999999999888999999999999999999999999999999999999999999876 568999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.||++.|||||+.||+++++.|+++|+++|++|++|...+
T Consensus 483 ~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 483 IVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred cccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999986543
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=476.79 Aligned_cols=270 Identities=40% Similarity=0.668 Sum_probs=261.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++.+++++|++++++++++|++.|+|||+++++ |++.|++||.++||.+++++++++|+|||++|
T Consensus 249 ~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~t 323 (519)
T TIGR02339 249 DAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKG-----IDDLAQHYLAKAGILAVRRVKKSDIEKLARAT 323 (519)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCC-----ccHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++++|+++|++|+||+.+ .+|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 324 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~v 402 (519)
T TIGR02339 324 GAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKV 402 (519)
T ss_pred CCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999875 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|+..|..++.++|+|+.+|.+.
T Consensus 403 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 482 (519)
T TIGR02339 403 VAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIE 482 (519)
T ss_pred eeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999986677899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 483 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 483 DMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 999999999999999999999999999999999884
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=478.00 Aligned_cols=281 Identities=37% Similarity=0.619 Sum_probs=264.2
Q ss_pred hhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccc
Q psy8873 73 QMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 152 (841)
Q Consensus 73 ~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~ 152 (841)
.++++.|..+ ...++.++++++++.+.++|+++++++++++.+.|+|+|+++++ |++.|++||.++||++++++
T Consensus 243 ~~~le~~~~~-~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~v 316 (526)
T cd03339 243 TCPFEPPKPK-TKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWG-----FDDEANHLLLQNGLPAVRWV 316 (526)
T ss_pred EecccCCccc-cceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCC-----CCHHHHHHHHHCCCEEEEeC
Confidence 3445555443 25677899999999999999999999999999999999999998 89999999999999999999
Q ss_pred cchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHH
Q psy8873 153 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHD 230 (841)
Q Consensus 153 ~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~d 230 (841)
++++|+|||++|||+++++++++++++||+|+.|+++++|. ++|++|+||+.+ ++|||+|||+|+.+++|+||+++|
T Consensus 317 ~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~l~D 395 (526)
T cd03339 317 GGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-KAVTIFIRGGNKMIIEEAKRSLHD 395 (526)
T ss_pred CHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC-CEEEEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985 688999999875 799999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC
Q psy8873 231 ALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG 310 (841)
Q Consensus 231 al~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~ 310 (841)
|++++|+++++|++|||||++||+++.+|+++++.+++++|+++++|++||+.|||+||+|||+|+.+++.+|+..|.++
T Consensus 396 Al~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~ 475 (526)
T cd03339 396 ALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE 475 (526)
T ss_pred HHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999643
Q ss_pred -CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 311 -ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 311 -~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 476 ~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 476 KNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 56799999999999999999999999999999999999999999999873
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=476.49 Aligned_cols=270 Identities=39% Similarity=0.678 Sum_probs=261.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.+++++++++++++|+++++++++++.+.|+|||+++++ |+++|++||.++||.+++++++++|+|||++|
T Consensus 246 ~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~t 320 (517)
T cd03343 246 DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKG-----IDDLAQHYLAKAGILAVRRVKKSDMEKLARAT 320 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----ccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|+++++|+++|++|+||+.+ ..|||+|||+|+.+++|+||+++||++++|+++++|++
T Consensus 321 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~v 399 (517)
T cd03343 321 GAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKV 399 (517)
T ss_pred CCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999875 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.++..++|+|+.+|.+.
T Consensus 400 vpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~ 479 (517)
T cd03343 400 VAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVV 479 (517)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999976677899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 480 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 515 (517)
T cd03343 480 DMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515 (517)
T ss_pred chhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 999999999999999999999999999999999985
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=470.98 Aligned_cols=273 Identities=24% Similarity=0.408 Sum_probs=261.3
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---eEEEecchhhhhHHHHHHHHHhhhheeeeccccc
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG-------CN---VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIER 154 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~-------~~---lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~ 154 (841)
...+.+.+++++..+...|++++++++++|++.+ ++ +|+++++ |++.+++||.++||++++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~-----I~~~a~~~L~~~~I~~i~rv~~ 319 (531)
T TIGR02347 245 NSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKG-----IDPPSLDLLAKEGIMALRRAKR 319 (531)
T ss_pred CceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCC-----ccHHHHHHHHHCCceEEccCCH
Confidence 4568889999999999999999999999999976 25 9999987 8999999999999999999999
Q ss_pred hhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 155 EDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 155 ~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
++|+|||++|||+++++++++++++||+|+.|+++++++++|++|+||+.+ +.|||+|||+|+.+++|+||+++||+++
T Consensus 320 ~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TI~lrG~t~~~l~E~er~l~DAl~v 398 (531)
T TIGR02347 320 RNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-KSCTILIKGPNDHTIKQIKDAVRDGLRA 398 (531)
T ss_pred HHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCC-CeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcce
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 314 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~ 314 (841)
+++++++|++|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++
T Consensus 399 ~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~ 478 (531)
T TIGR02347 399 VKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVV 478 (531)
T ss_pred HHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCce
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999998777789
Q ss_pred eeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 315 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 315 G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++|+..+
T Consensus 479 Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~ 527 (531)
T TIGR02347 479 GVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGR 527 (531)
T ss_pred eeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999987543
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=467.52 Aligned_cols=273 Identities=28% Similarity=0.476 Sum_probs=262.8
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
.+.+.+++++++..+...|++++.++++.|++.|++++++++. |++.++|||.+++|++++++++++|+|||++|
T Consensus 244 ~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~-----I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~t 318 (519)
T TIGR02341 244 GSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQL-----IYNYPEQLFADAGVMAIEHADFEGIERLALVT 318 (519)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-----CCHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 4567778899999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|+++.+|+++|++|+||+.+ ++|||+|||+|+.+++|.||+++||+++++++++++++
T Consensus 319 Ga~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~v 397 (519)
T TIGR02341 319 GGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG-EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRT 397 (519)
T ss_pred CCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCC-CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999974 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|..+..++|+|+.+|.+.
T Consensus 398 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~ 477 (519)
T TIGR02341 398 VLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIA 477 (519)
T ss_pred EeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCccc
Confidence 99999999999999999988899999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+..+
T Consensus 478 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 478 DMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 999999999999999999999999999999999997654
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-51 Score=472.03 Aligned_cols=271 Identities=30% Similarity=0.521 Sum_probs=258.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
...+.++++++++.+.++|++++++++++|.+.|++||+++++ |++.|++||.++||++++++++++|+|||++|
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~-----I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGG-----IDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 4577889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeeccccc------CCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l------~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||+++++++++ ++++||+|++|+++++++++|++|+||+.+ ++|||+|||+|+.+++|.||+++||+++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~ 394 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-SSASIILRGANDFMLDEMERSLHDALCVVKRT 394 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988655 445899999999999999999999999874 89999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC--------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-------- 310 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-------- 310 (841)
+++|++|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 395 ~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~ 474 (527)
T cd03335 395 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKH 474 (527)
T ss_pred hhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccccc
Confidence 999999999999999999999999888999999999999999999999999999999999999999999765
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 475 ~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~ 525 (527)
T cd03335 475 LKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKL 525 (527)
T ss_pred CceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeec
Confidence 347899999999999999999999999999999999999999999998853
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=469.73 Aligned_cols=280 Identities=34% Similarity=0.582 Sum_probs=263.5
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
++++.|..+ .+.++.++++++++.+.++|+++++++++++++.|++||+++++ |++.|++||.++||.++++++
T Consensus 248 ~~le~~~~~-~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~-----I~~~al~~L~~~~i~~v~~~~ 321 (532)
T TIGR02343 248 CPFEPPKPK-TKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWG-----FDDEANHLLLQNDLPAVRWVG 321 (532)
T ss_pred eeccccccc-cceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----ccHHHHHHHHHCCcEEEEcCC
Confidence 334444333 25678899999999999999999999999999999999999998 899999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDA 231 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~da 231 (841)
+++|+|||++|||+++++++++++++||+|+.++++++|. ++|++|++|+.+ ..|||+|||+|+.+++|+||+++||
T Consensus 322 ~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~E~er~l~DA 400 (532)
T TIGR02343 322 GHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-KAVTIFIRGGNKMIIEEAKRSIHDA 400 (532)
T ss_pred HHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC-CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 489999999875 7999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-
Q psy8873 232 LCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG- 310 (841)
Q Consensus 232 l~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~- 310 (841)
+++++++++++++|||||++||+++++|++++.++++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 401 l~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 480 (532)
T TIGR02343 401 LCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEK 480 (532)
T ss_pred HHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999889999999999999999999999999999999999999999999744
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 481 ~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 481 NPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred CCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 56799999999999999999999999999999999999999999999984
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0356|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=427.51 Aligned_cols=395 Identities=22% Similarity=0.298 Sum_probs=337.7
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchh
Q psy8873 366 QDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVS 445 (841)
Q Consensus 366 qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~ 445 (841)
+++++||||||+++|+.++..++.+-+.+|.+|..|.+|+..+.+.+.+.|.++|.|++ ..+++.++|.++.+|+
T Consensus 94 tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt--t~eeIaqVAtiSAngD--- 168 (550)
T KOG0356|consen 94 TNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT--TPEEIAQVATISANGD--- 168 (550)
T ss_pred ccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhhhcCCc---
Confidence 45678999999999999999999999999999999999999999999999999999998 7889999999999998
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccc-cceeEEeEEEecCCCCCCCCceeecceEEEEEeecCC
Q psy8873 446 QQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVE-DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISP 524 (841)
Q Consensus 446 ~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~-dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~ 524 (841)
..+.+++.+|+.++++ .+ .|.++ .|.+.. +.++++||-|+++|.+ |+|+.+++-. .++|+.
T Consensus 169 ---~~ig~li~~a~~kvG~---~G-----VItv~--~gkt~~delev~eGmkfdrGyiS---Pyfi~~~k~~--~~e~e~ 230 (550)
T KOG0356|consen 169 ---KEIGNLISDAMKKVGR---KG-----VITVK--DGKTLEDELEVIEGMKFDRGYIS---PYFITSSKKQ--KVEFEN 230 (550)
T ss_pred ---HHHHHHHHHHHHHhCc---CC-----eEEee--cCCccccchhhhhcccccccccC---ccccccchhh--hhhhhh
Confidence 8899999999999975 33 46665 366664 5699999999999977 7887777655 445554
Q ss_pred Cccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH-hcCcEEEecCC----
Q psy8873 525 PKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE---- 598 (841)
Q Consensus 525 ~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~---- 598 (841)
+... +..+ |++. +.|.+.++.-.....+|++++++|++|+|..++++.|+ ..++++++.+.
T Consensus 231 ~~~ll~~kk--i~~v-----------~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdn 297 (550)
T KOG0356|consen 231 ALLLLSEKK--ISSV-----------QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDN 297 (550)
T ss_pred hhhhhhhhh--hhHH-----------HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcch
Confidence 4443 2222 3444 45778888888888999999999999999999999999 68999998764
Q ss_pred -hhHHHHHHHHcCCccccc------CCCCCCCCceeeeeEEEEEecCeeEEEEEc-------------------------
Q psy8873 599 -REDIEFVCKTLNTRPIAS------LDHFLPEHLSSADLVEEIPAGNSRFVKISG------------------------- 646 (841)
Q Consensus 599 -~~~L~~ia~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------------------------- 646 (841)
+..+.+++.+||++++.. ++...++++|.|..+.++.- ....+.+
T Consensus 298 rk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd---~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 298 RKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD---DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred HHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecC---cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 566999999999999873 56778899999999887551 1111111
Q ss_pred ---------cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhh
Q psy8873 647 ---------IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717 (841)
Q Consensus 647 ---------~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~ 717 (841)
.+.++++++|.++|.++.+++|.+.+++||++++++++++| +|||||++.++++..|.
T Consensus 375 e~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~------------ 441 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLD------------ 441 (550)
T ss_pred hHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhh------------
Confidence 23567999999999999999999999999999999999999 99999999999999998
Q ss_pred hhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEcc
Q psy8873 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVR 797 (841)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~ 797 (841)
+....-+..++.+++++.+||..|..+++.|||.|+..++.+++. . .+|||..
T Consensus 442 ---------------------~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-----~-~~gyda~ 494 (550)
T KOG0356|consen 442 ---------------------ELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-----D-DYGYDAA 494 (550)
T ss_pred ---------------------hcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-----h-hhhhhhh
Confidence 222223446778899999999999999999999999999999983 2 7999999
Q ss_pred CCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 798 KGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 798 ~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+++++||.+.||+||+.|.+.+|..|..+|+++++++.+|..
T Consensus 495 ~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvte 536 (550)
T KOG0356|consen 495 KGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTE 536 (550)
T ss_pred cccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999998754
|
|
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=465.42 Aligned_cols=277 Identities=31% Similarity=0.548 Sum_probs=264.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
.+.+.++++.++..+...|++++.++++.+++.|+|||+++++ +++++++||.++||.+++++++.+|+|||.+|
T Consensus 246 ~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~-----I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~t 320 (531)
T TIGR02346 246 KGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGS-----VGDMALHYCEKYNIMVLKIPSKFELRRLCKTV 320 (531)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCC-----cCHHHHHHHHHCCcEEEecCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++++|+++|.+|++|...+++|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 321 Ga~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~v 400 (531)
T TIGR02346 321 GATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRF 400 (531)
T ss_pred CCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999998754589999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCc--
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA-- 322 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~-- 322 (841)
|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|+..|++++.++|+|+.+|.
T Consensus 401 VpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~ 480 (531)
T TIGR02346 401 LPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDG 480 (531)
T ss_pred EECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCcc
Confidence 999999999999999999888899999999999999999999999999999999999999999776778999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+.||++.|||||+.||+++++.|+++|+++|++|++|...+...
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~ 524 (531)
T TIGR02346 481 VKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGG 524 (531)
T ss_pred ccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCC
Confidence 59999999999999999999999999999999999997654333
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=462.53 Aligned_cols=269 Identities=32% Similarity=0.528 Sum_probs=260.1
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.++++++++.+.+.|++++.++++.+.+.|+++|+++++ +++.+++||.++||.+++++++++|+|||++|||
T Consensus 250 ~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~-----i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa 324 (522)
T cd03340 250 EVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLP-----IGDLATQYFADRDIFCAGRVPEEDLKRVAQATGG 324 (522)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCC
Confidence 55688999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
+++++++++++++||+|+.|+++++|+++|++|+||..+ ..|||+|||+|+.+++|.||+++||++++++++++|++||
T Consensus 325 ~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 325 SIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred EEeeccccCCccccccceEEEEEEECCEEEEEEECCCCC-ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999875 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-cceeeecCCCcccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITN 325 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~-~~~G~d~~~~~~~d 325 (841)
|||++||+++.+|+++++...+++|+++++|++||+.|||+||+|||+|+.+++.+|++.|..++ .++|+|+.+|.+.|
T Consensus 404 GGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d 483 (522)
T cd03340 404 GGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIAD 483 (522)
T ss_pred CcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccc
Confidence 99999999999999998888999999999999999999999999999999999999999998765 68999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 484 ~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 484 NFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred hhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 999999999999999999999999999999999854
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=459.68 Aligned_cols=273 Identities=30% Similarity=0.488 Sum_probs=258.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.++++.+++.+.++|++++.+.++.|.+.|++||+++++ +++.|++||.+++|.+++++++++|+|||++|
T Consensus 245 ~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~-----I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~t 319 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGG-----IDDMCLKYFVEAGAMGVRRCKKEDLKRIAKAT 319 (536)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 5677889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeeccccc------CCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l------~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||+++++++++ ++++||+|++|+++++++++|++|+||+.+ .+|||+|||+|+.+++|+||+++||+++++++
T Consensus 320 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 320 GGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-KSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred CCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987544 456699999999999999999999999875 79999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC--------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-------- 310 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-------- 310 (841)
+++|++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~ 478 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKH 478 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCccccccc
Confidence 999999999999999999999999888899999999999999999999999999999999999999988754
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
..++|+|+.+|.+.||++.|||||+.||.++++.|+++|+++|++|++|+..+
T Consensus 479 ~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~ 531 (536)
T TIGR02340 479 LKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP 531 (536)
T ss_pred CceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 34699999999999999999999999999999999999999999999997643
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=454.73 Aligned_cols=270 Identities=32% Similarity=0.529 Sum_probs=260.4
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
..+.++++++++.+.+.|++++.++++++.+.|+++++++++ +++.+++||.+++|.+++++++.+++++|++||
T Consensus 250 ~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-----i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tg 324 (522)
T TIGR02345 250 AEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-----IGDLATQYFADHNIFCAGRVSDEDLKRVVKACG 324 (522)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence 356778999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
|+++++++++++++||+|+.|+++++++++|++|+||+.+ .+|||+|||+|+.+++|.||+++||+++++++++++++|
T Consensus 325 a~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vv 403 (522)
T TIGR02345 325 GSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIV 403 (522)
T ss_pred CeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999999875 799999999999999999999999999999999998899
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++||+++.+|++++.+..+++|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++|+|+.+|.+.|
T Consensus 404 pGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d 483 (522)
T TIGR02345 404 AGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGD 483 (522)
T ss_pred eCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999877778999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 484 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 484 NFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred hhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 999999999999999999999999999999999954
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=438.78 Aligned_cols=337 Identities=28% Similarity=0.459 Sum_probs=296.7
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
+...|.+++..|+.||..++++|||||||+||||||+++.|+++|||||+||+++++++||.++|+
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 456789999999999999999999999999999999999999999999999999999999988774
Q ss_pred --------------------------------------------ccceeec---CHHHHHHH---------HHHHHHHHH
Q psy8873 85 --------------------------------------------DHKVVVS---DYSAMDRV---------LKEERAYIL 108 (841)
Q Consensus 85 --------------------------------------------~~~~~i~---~~~~l~~~---------~~~E~~~i~ 108 (841)
.....++ +.+.+..+ .....+.+.
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 165 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLT 165 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHH
Confidence 0112222 33333211 000011111
Q ss_pred HH----HHHH------------------------------------------------------------------HHhC
Q psy8873 109 NI----VKQI------------------------------------------------------------------KKAG 118 (841)
Q Consensus 109 ~~----l~~i------------------------------------------------------------------~~~~ 118 (841)
++ +..+ ....
T Consensus 166 ~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~ 245 (484)
T cd03342 166 EIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFF 245 (484)
T ss_pred HHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEE
Confidence 11 0000 0011
Q ss_pred CCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEE
Q psy8873 119 CNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 198 (841)
Q Consensus 119 ~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~ 198 (841)
.+|||++++ |++.|++||.++||++++++++++|+|||++|||+++++++++++++||+|++++++++|+++|++
T Consensus 246 ~~lvi~~~~-----I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~ 320 (484)
T cd03342 246 YSVVINQKG-----IDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTF 320 (484)
T ss_pred EEEEEeCCC-----ccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEE
Confidence 237888887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHH
Q psy8873 199 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFA 278 (841)
Q Consensus 199 ~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~ 278 (841)
|+||+.+ +.|||+|||+|+.+++|.||+++||++++++++++|++|||||++||+++.+|+++++..++++|+++++|+
T Consensus 321 i~~~~~~-~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a 399 (484)
T cd03342 321 IEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFA 399 (484)
T ss_pred EECCCCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999876 799999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhH
Q psy8873 279 QALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358 (841)
Q Consensus 279 ~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~i 358 (841)
+||+.||++||+|||+|+.+++.+|+..|.+++.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++
T Consensus 400 ~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~i 479 (484)
T cd03342 400 DALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEI 479 (484)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999877778999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy8873 359 LVE 361 (841)
Q Consensus 359 i~~ 361 (841)
++.
T Consensus 480 i~~ 482 (484)
T cd03342 480 IRA 482 (484)
T ss_pred hhc
Confidence 853
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=427.46 Aligned_cols=274 Identities=34% Similarity=0.541 Sum_probs=259.6
Q ss_pred ccceeecCHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhH-HHHH
Q psy8873 85 DHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCN-VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI-EFVC 161 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~-~~i~~~l~~i~~~~~~-lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L-~~ia 161 (841)
..++.++++.+|..+.++|+ +.+..++..+.+.++| +++++++ ++|++++||.+.+|++++++.++++ ++++
T Consensus 236 ~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~g-----i~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~ 310 (524)
T COG0459 236 PLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPG-----IDDLAKAYLEDIAILTGRRVKKEDLGERLA 310 (524)
T ss_pred cceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCC-----CcHHHHHHHHhhcceecceecchhhHHHHH
Confidence 47889999999999999999 9999999999999999 9999998 8999999999999999999999999 7999
Q ss_pred HHhCCeEeecccccCCCCCcc--cceeeeeecCCceEEEEEcccC-CCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 162 KTLNTRPIASLDHFLPEHLSS--ADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~--~~~~~~~~ig~~~~~~~~g~~~-~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
+++||++++.++++++..+|. |+.+++..++++++++|.+|+. .+++|||+|||+|+.+++|.||++||||+++|++
T Consensus 311 ~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~a 390 (524)
T COG0459 311 KLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAA 390 (524)
T ss_pred HccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999985 2579999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccc-hhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeee
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSG-IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGIN 317 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~-~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d 317 (841)
+++|++|||||++|++++.+|++++.+.++ ++|+++++|++||+.|||+||+|||+||.+++.+||+.|. ..++|+|
T Consensus 391 ve~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d 468 (524)
T COG0459 391 VEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGID 468 (524)
T ss_pred HhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCcccee
Confidence 999999999999999999999998545555 9999999999999999999999999999999999999886 4469999
Q ss_pred cCCCcc-ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 318 VRKGAI-TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 318 ~~~~~~-~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.++.+ .||++.|||||++||++++++|+++|.++|++|.+|.+.+..
T Consensus 469 ~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 469 AFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred ccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 999999 779999999999999999999999999999999999877654
|
|
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=429.55 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=293.8
Q ss_pred cchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc----------------
Q psy8873 22 KATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD---------------- 85 (841)
Q Consensus 22 ~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~---------------- 85 (841)
.+++++..|+.+|+.+++++++||||+||||||+++.|+++|||||+||+++++++||.++|+.
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 3578999999999999999999999999999999999999999999999999999999888750
Q ss_pred ------------------------------------------ccee-ec---CHHHHHHHHH--------HHHHHHHHH-
Q psy8873 86 ------------------------------------------HKVV-VS---DYSAMDRVLK--------EERAYILNI- 110 (841)
Q Consensus 86 ------------------------------------------~~~~-i~---~~~~l~~~~~--------~E~~~i~~~- 110 (841)
.... ++ +.+.+..+.+ ...+++.++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~ 164 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLV 164 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 0111 21 1222211100 001111111
Q ss_pred ---HHH---------------------------------------------H-----------HHhCCCeEEEecchhhh
Q psy8873 111 ---VKQ---------------------------------------------I-----------KKAGCNVLLVQKSILRD 131 (841)
Q Consensus 111 ---l~~---------------------------------------------i-----------~~~~~~lvi~~~~i~~~ 131 (841)
+.. + .+.|++||+++++
T Consensus 165 ~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~g~~lvi~~~~---- 240 (472)
T cd03341 165 AEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGS---- 240 (472)
T ss_pred HHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccCCCeEEEECCC----
Confidence 000 0 1127888999998
Q ss_pred hHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEE
Q psy8873 132 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 211 (841)
Q Consensus 132 ~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI 211 (841)
|++.+++||.++||++++++++.+|+|||++|||+++++++++++++||+|++|+++++|+++|++|++|...+++|||
T Consensus 241 -I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI 319 (472)
T cd03341 241 -VGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATI 319 (472)
T ss_pred -CCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999763479999
Q ss_pred EEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy8873 212 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 291 (841)
Q Consensus 212 ~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~N 291 (841)
+|||+|+.+++|.||+++||++++++++++|++|||||++||+++.+|++++...++++++++++|++||+.||++||+|
T Consensus 320 ~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~N 399 (472)
T cd03341 320 VLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAEN 399 (472)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhccCCCcceeeecCCC--ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 292 AGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 292 aG~d~~~~~~~l~~~~~~~~~~~G~d~~~~--~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||+|+.+++.+|+..|++++.++|+|+.+| .+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 400 aG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 470 (472)
T cd03341 400 AGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIM 470 (472)
T ss_pred CCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence 999999999999999977677899999999 999999999999999999999999999999999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0359|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=391.76 Aligned_cols=333 Identities=26% Similarity=0.431 Sum_probs=307.5
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc----------------
Q psy8873 21 SKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM---------------- 84 (841)
Q Consensus 21 ~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~---------------- 84 (841)
..-..|...|+.++..+.+.+++.|||+|..||+++++|++++|+||.+.+++|.++||.+-++
T Consensus 13 ~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 13 AQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred HhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcc
Confidence 3345677789999999999999999999999999999999999999999999999999954332
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence
Q ss_pred ---------------------------------------------------------------------ccceeecCHHH
Q psy8873 85 ---------------------------------------------------------------------DHKVVVSDYSA 95 (841)
Q Consensus 85 ---------------------------------------------------------------------~~~~~i~~~~~ 95 (841)
++.+..++.++
T Consensus 173 Vl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~e 252 (520)
T KOG0359|consen 173 VLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEE 252 (520)
T ss_pred heeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhH
Confidence 01223345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC----eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeec
Q psy8873 96 MDRVLKEERAYILNIVKQIKKAGCN----VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIAS 171 (841)
Q Consensus 96 l~~~~~~E~~~i~~~l~~i~~~~~~----lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~ 171 (841)
-+.+...|++++.+.+++|++.+.. +||.+++ +++..++.|.+.||.+.++.++..|||+..+||+..+++
T Consensus 253 re~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkG-----idp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 253 REVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKG-----IDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccC-----CCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 7888999999999999999998865 6777777 799999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChH
Q psy8873 172 LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 251 (841)
Q Consensus 172 l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~ 251 (841)
+++++|+.||+|+.+++..+|+++|+|+++|++| +.|||+++||+.+.+.++|++++|++++++++++|+.++||+|++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCCC-cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccccc
Q psy8873 252 EIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENV 331 (841)
Q Consensus 252 e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi 331 (841)
|++++.+|+...++.+|+.++|+++|++||.++|++|++|+|+|+.+.+.+|...|..+ -.|+|..+|.-.+....||
T Consensus 407 ~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi 484 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGI 484 (520)
T ss_pred HHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccc
Confidence 99999999988888999999999999999999999999999999999999999988755 4599999999999999999
Q ss_pred ccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 332 VQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 332 ~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
||.+.|+++.|.+++-.|+.+|-+|.++..
T Consensus 485 ~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 485 YDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999853
|
|
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=424.33 Aligned_cols=336 Identities=35% Similarity=0.559 Sum_probs=293.0
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc-------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD------------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~------------- 85 (841)
+...|.+++..|+.||..+++++||||||+||+|||+++.|+++|||||+||+++++++||+++|+.
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 3566899999999999999999999999999999999999999999999999999999999998750
Q ss_pred -----------------------------------------------cceeecCHHHHHHHHH---------HHHHHHHH
Q psy8873 86 -----------------------------------------------HKVVVSDYSAMDRVLK---------EERAYILN 109 (841)
Q Consensus 86 -----------------------------------------------~~~~i~~~~~l~~~~~---------~E~~~i~~ 109 (841)
.++.+.+.+.+..+.. .+.+.+.+
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~ 169 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCN 169 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 1122223333321100 11111111
Q ss_pred H----HHHHH---------------------------H----------------------hCCC----------eEEEec
Q psy8873 110 I----VKQIK---------------------------K----------------------AGCN----------VLLVQK 126 (841)
Q Consensus 110 ~----l~~i~---------------------------~----------------------~~~~----------lvi~~~ 126 (841)
+ +..+. + ..+. ||++++
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~lvi~~k 249 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYLVITEK 249 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcceEEEeCC
Confidence 1 11110 0 0011 577888
Q ss_pred chhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCC
Q psy8873 127 SILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 127 ~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
+ |++.|++||.++||++++++++++|+|||++|||+++++++++++++||+ |+.+++++++++++++|+||+.+
T Consensus 250 ~-----I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~ 324 (480)
T cd03337 250 G-----VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP 324 (480)
T ss_pred C-----ccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC
Confidence 7 89999999999999999999999999999999999999999999999999 67778888899999999999875
Q ss_pred CCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHH
Q psy8873 206 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 285 (841)
Q Consensus 206 ~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip 285 (841)
++|||+|||+|+.+++|.||+++||+++++++++++++|||||++||+++.+|++++++.++++|+++++|++||+.||
T Consensus 325 -~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip 403 (480)
T cd03337 325 -KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIP 403 (480)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 286 LTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 286 ~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|+||+|||+|+.+++.+|++.|.++ ..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 404 ~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 404 RTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999876 57899999999999999999999999999999999999999999999873
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=419.33 Aligned_cols=343 Identities=22% Similarity=0.336 Sum_probs=303.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
-|...||++++..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++|| +|+|+.
T Consensus 2 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd 81 (542)
T PRK12849 2 AKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTN 81 (542)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999999999999999999 888740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv 161 (542)
T PRK12849 82 DVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELI 161 (542)
T ss_pred CccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHH
Confidence
Q ss_pred ----------c--------------------------------------ceeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 ----------H--------------------------------------KVVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 ----------~--------------------------------------~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
. +..+++|.-+ +..+..+ +.+.++++++.
T Consensus 162 ~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~-~~~~~~l~~i~ 240 (542)
T PRK12849 162 AEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSL-QDLLPLLEKVA 240 (542)
T ss_pred HHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCH-HHHHHHHHHHH
Confidence 0 0011111000 1111222 56778999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhh------heeeeccccc-----hhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~~-----~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|.++ +|++++++++ ++|+|||++|||++++ +++++++++
T Consensus 241 ~~~~~lvI~~~~-----I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~ 315 (542)
T PRK12849 241 QSGKPLLIIAED-----VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDD 315 (542)
T ss_pred HhCCCEEEECCC-----CcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHH
Confidence 999999999998 799999999988 8999998874 4499999999999999 699999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++. .+++++++||+++ ++.|||+|||+|+.+++|+|
T Consensus 316 LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~e 392 (542)
T PRK12849 316 LGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERK 392 (542)
T ss_pred CceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Confidence 9999999976 4889999988764 35899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|.+++ +.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~ 470 (542)
T PRK12849 393 DRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLE 470 (542)
T ss_pred HHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 99999999999999998 99999999999999999998 89999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGT 374 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGT 374 (841)
.| .++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+...+.+.|.|.
T Consensus 471 ~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~ 535 (542)
T PRK12849 471 LE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDPPGGMGG 535 (542)
T ss_pred hC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCCCCCCCC
Confidence 76 379999999999999999999999999999999999999999999999987766655555553
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=418.06 Aligned_cols=335 Identities=21% Similarity=0.310 Sum_probs=298.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccc----cccccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI----HPAAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~----~p~ak~~~------- 85 (841)
.|++.||.++|..|++|++.++++|||||||+||||||+++.|+|+|||||+||+++++++ ||+|+|+.
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~ 82 (545)
T PRK12852 3 AKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTN 82 (545)
T ss_pred cchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcC
Confidence 3788999999999999999999999999999999999999999999999999999999994 88888750
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 83 ~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li 162 (545)
T PRK12852 83 DLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMI 162 (545)
T ss_pred ceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHH
Confidence
Q ss_pred --------------------------------------cc----------eeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HK----------VVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
.+ ..++++.-+ +..+ .+.+++.++++.+.
T Consensus 163 ~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i-~~~~~i~~~l~~i~ 241 (545)
T PRK12852 163 AQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL-SGLQAMLPVLEAVV 241 (545)
T ss_pred HHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc-CCHHHHHHHHHHHH
Confidence 00 011111000 0001 22368999999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhh------heeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|..+ +|+++++++ +++|+|||++|||++++ +++++++++
T Consensus 242 ~~g~~lvI~~~~-----i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~ 316 (545)
T PRK12852 242 QSGKPLLIIAED-----VEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKM 316 (545)
T ss_pred HhCcCEEEECCC-----CcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHH
Confidence 999999999998 799999999875 799998766 88999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.+++.+ ++++++.|+..+ +++|||+|||+|+.+++|+|
T Consensus 317 lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~e 393 (545)
T PRK12852 317 LGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKK 393 (545)
T ss_pred CCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 99999999885 788999887653 57899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||+|++++++++| +|||||++|++++.+|.+++.. ++++|+++++|++||+.|||+||+|||+|+.+++++|++
T Consensus 394 r~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (545)
T PRK12852 394 DRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILE 471 (545)
T ss_pred HHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999999876 889999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. .++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+++
T Consensus 472 ~~~---~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 472 NKS---ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred hcC---CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 773 479999999999999999999999999999999999999999999999876654
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=416.32 Aligned_cols=343 Identities=23% Similarity=0.358 Sum_probs=301.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
-|+..||+++|..|++|++.++++|+|||||+||||||+++.|+++|||||+||+|+++++|| +++|+.
T Consensus 2 ~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd 81 (542)
T PRK00013 2 AKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTN 81 (542)
T ss_pred CchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcC
Confidence 368899999999999999999999999999999999999999999999999999999999999 677640
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv 161 (542)
T PRK00013 82 DVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLI 161 (542)
T ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHH
Confidence
Q ss_pred ----------cceee--------------------------------------cCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 ----------HKVVV--------------------------------------SDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 ----------~~~~i--------------------------------------~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
..+.+ .++.-+ +..+. ..+.+.++++.+.
T Consensus 162 ~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~-~~~~l~~~l~~i~ 240 (542)
T PRK00013 162 AEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS-NIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC-CHHHHHHHHHHHH
Confidence 00000 000000 00011 1255778999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhh------eeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |++.|+++|..++ |+++++++ +++|+|||++|||++++ +++++++++
T Consensus 241 ~~g~~lvi~~~~-----I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~ 315 (542)
T PRK00013 241 QSGKPLLIIAED-----VEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLED 315 (542)
T ss_pred HhCCCEEEECCC-----CcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHH
Confidence 999999999998 7999999999886 89999886 88999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.+++. .+++++|++|..+ |+.+||+|||+|+.+++|+|
T Consensus 316 LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~e 392 (542)
T PRK00013 316 LGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKK 392 (542)
T ss_pred CCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 9999999987 4899999988764 12789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++|+++++| +|||||++||+++.+|.++ ++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~ 470 (542)
T PRK00013 393 DRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKN 470 (542)
T ss_pred HHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999998 788999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc--ccCCCC
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD--IEAGDG 373 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd--~~~GDG 373 (841)
.| +.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+.... .+.|.|
T Consensus 471 ~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~ 537 (542)
T PRK00013 471 GK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGG 537 (542)
T ss_pred hc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCC
Confidence 88 347999999999999999999999999999999999999999999999988665432 345554
|
|
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=412.47 Aligned_cols=334 Identities=20% Similarity=0.323 Sum_probs=298.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccc----cccc--------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPA----AKMM-------- 84 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~----ak~~-------- 84 (841)
.|+..|++++|..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++||. ++|+
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd 82 (544)
T PRK12850 3 AKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTN 82 (544)
T ss_pred cceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999999999999999999999999999999998 6653
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 83 ~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv 162 (544)
T PRK12850 83 DLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMI 162 (544)
T ss_pred chhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence
Q ss_pred ---------c----------------------------c----------ceeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 85 ---------D----------------------------H----------KVVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 85 ---------~----------------------------~----------~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
. + +..++++.-+ +..+.. .+.+.++++.+.
T Consensus 163 ~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~-~~~i~~~l~~i~ 241 (544)
T PRK12850 163 AEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISN-LQDLLPILEAVV 241 (544)
T ss_pred HHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCC-HHHHHHHHHHHH
Confidence 0 0 0001111000 000111 356899999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeecc-----ccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~-----~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |++.|+++|.+++| +++++ +++++|+|||++|||++++ +++++++++
T Consensus 242 ~~g~~lvI~~~~-----I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~ 316 (544)
T PRK12850 242 QSGRPLLIIAED-----VEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDM 316 (544)
T ss_pred HhCCCEEEECCC-----CChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHH
Confidence 999999999998 89999999999998 88776 7899999999999999999 789999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+++++.+ +++++|+||..+ ++.|||+|||+|+.+++|+|
T Consensus 317 LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~e 393 (544)
T PRK12850 317 LGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKK 393 (544)
T ss_pred cCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHH
Confidence 99999999874 789999988763 35899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|+++ ++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (544)
T PRK12850 394 DRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAE 471 (544)
T ss_pred HHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999997 9999999999999999998 688999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+..
T Consensus 472 ~~~----~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 472 LPG----NFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred hCC----CcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 763 78999999999999999999999999999999999999999999999876543
|
|
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=407.44 Aligned_cols=336 Identities=43% Similarity=0.690 Sum_probs=294.3
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc-------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD------------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~------------- 85 (841)
+..++++++.+|++||..+++++++||||+||+|||+++.|+++|||||+||+++++++||+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDG 81 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDG 81 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999988750
Q ss_pred -----------------------------------------------cceeecCHHHHHHHHH----------HHH---H
Q psy8873 86 -----------------------------------------------HKVVVSDYSAMDRVLK----------EER---A 105 (841)
Q Consensus 86 -----------------------------------------------~~~~i~~~~~l~~~~~----------~E~---~ 105 (841)
.++.+.+.+.+..+.. +.+ +
T Consensus 82 Ttt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 82 TTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 0111333333322211 111 1
Q ss_pred HHHHHHHHHHH--------------------------------------------hCCC----------eEEEecchhhh
Q psy8873 106 YILNIVKQIKK--------------------------------------------AGCN----------VLLVQKSILRD 131 (841)
Q Consensus 106 ~i~~~l~~i~~--------------------------------------------~~~~----------lvi~~~~i~~~ 131 (841)
.+.+.+..+.. .++. +|+++++
T Consensus 162 l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi~~~~---- 237 (464)
T cd00309 162 LVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKG---- 237 (464)
T ss_pred HHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcceEEecCCC----
Confidence 11122222211 0112 3445554
Q ss_pred hHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEE
Q psy8873 132 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 211 (841)
Q Consensus 132 ~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI 211 (841)
|++.|+++|.++||.+++++++++|+|||++|||++++++++++++++|+|+.+++.++|++++++|.+++.+ .+|||
T Consensus 238 -I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~TI 315 (464)
T cd00309 238 -IDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG-KVATI 315 (464)
T ss_pred -cCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC-CEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999864 79999
Q ss_pred EEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy8873 212 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 291 (841)
Q Consensus 212 ~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~N 291 (841)
+|||+|+.+++|.||+++||++++|++++++++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|
T Consensus 316 llrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~N 395 (464)
T cd00309 316 LLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAEN 395 (464)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988999999999999999999988899999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 292 AGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 292 aG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||+|+.+++.+|+..|..+..++|+|..+|.+.||.+.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 396 aG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 396 AGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999987777899999999999999999999999999999999999999999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=407.92 Aligned_cols=328 Identities=24% Similarity=0.361 Sum_probs=292.8
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~--------- 84 (841)
|+..||.+++..|++|++.++++|+|||||+||+|||+++.|+|+|||||+||+++++++|| +++|+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999 88764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence
Q ss_pred --------ccce--------------------------------------eecCHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8873 85 --------DHKV--------------------------------------VVSDYSAM--DRVLKEERAYILNIVKQIKK 116 (841)
Q Consensus 85 --------~~~~--------------------------------------~i~~~~~l--~~~~~~E~~~i~~~l~~i~~ 116 (841)
...+ .++++.-+ +.-+... +.+.++++.+.+
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~-~~l~~~l~~i~~ 239 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI-QELLPILELVAK 239 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCH-HHHHHHHHHHHh
Confidence 0000 00111000 0001111 457778999999
Q ss_pred hCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeeccc-----cchhHHHHHHHhCCeEee-----cccccCCCCC
Q psy8873 117 AGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHL 180 (841)
Q Consensus 117 ~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~~l~~~~l 180 (841)
.|+||+|++++ +++.|+++|.++++ ++++++ ++++|+|||++|||++++ +++++++++|
T Consensus 240 ~~~~lvi~~~~-----i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~L 314 (520)
T cd03344 240 AGRPLLIIAED-----VEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDL 314 (520)
T ss_pred hCCCEEEEcCC-----CCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHC
Confidence 99999999998 79999999999988 776655 889999999999999999 8899999999
Q ss_pred cccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHHH
Q psy8873 181 SSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAAR 226 (841)
Q Consensus 181 G~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k~ 226 (841)
|+|+.+++.+ ++++++++|+.+ ++.|||+|||+|+.+++|+||
T Consensus 315 G~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r 391 (520)
T cd03344 315 GRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKD 391 (520)
T ss_pred CcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHH
Confidence 9999999875 789999988654 369999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhh
Q psy8873 227 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 306 (841)
Q Consensus 227 ~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~ 306 (841)
+++||++++++++++| +|||||++||+++++|.+++. .++++|+++++|++||+.|||+||+|||+|+.+++++|++.
T Consensus 392 ~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~ 469 (520)
T cd03344 392 RVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLES 469 (520)
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9999999999999998 999999999999999999987 99999999999999999999999999999999999999988
Q ss_pred ccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 307 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 307 ~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|.
T Consensus 470 ~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 470 PD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred cC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 75 799999999999999999999999999999999999999999998875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=407.91 Aligned_cols=338 Identities=22% Similarity=0.341 Sum_probs=295.4
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
+-++..+++++|.+|++|++.|+++|+|||||+||||||+++.|+|+|||||+||+|+++++|| +|+|+.
T Consensus 13 ~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~q 92 (555)
T PTZ00114 13 KGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKT 92 (555)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhh
Confidence 4457788999999999999999999999999999999999999999999999999999999999 888740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 93 d~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 172 (555)
T PTZ00114 93 NDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSL 172 (555)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHH
Confidence
Q ss_pred -----------------------c----------------c----------eeecCHHHH--HHHHHHHHHHHHHHHHHH
Q psy8873 86 -----------------------H----------------K----------VVVSDYSAM--DRVLKEERAYILNIVKQI 114 (841)
Q Consensus 86 -----------------------~----------------~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i 114 (841)
. + ..+++|.-+ +.-++ .-+.+.++++.+
T Consensus 173 i~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-~~~~i~~~le~i 251 (555)
T PTZ00114 173 IADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-SIQSILPILEHA 251 (555)
T ss_pred HHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-CHHHHHHHHHHH
Confidence 0 0 001111000 00011 124588899999
Q ss_pred HHhCCCeEEEecchhhhhHHHHHHHHHhhhh------eeeecc-----ccchhHHHHHHHhCCeEeecc------cccCC
Q psy8873 115 KKAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLVVKD-----IEREDIEFVCKTLNTRPIASL------DHFLP 177 (841)
Q Consensus 115 ~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~v~~-----~~~~~L~~ia~~tGa~~i~~l------~~l~~ 177 (841)
.+.++||+|++++ |++.|+++|..++ |+++++ +++++|+|||++|||+++++. +++++
T Consensus 252 ~~~~~~llI~~~~-----i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~ 326 (555)
T PTZ00114 252 VKNKRPLLIIAED-----VEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDP 326 (555)
T ss_pred HHhCCCEEEECCC-----CcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCH
Confidence 9999999999998 7999999998875 888866 567999999999999999987 88888
Q ss_pred CCCcccceeeeeecCCceEEEEEcccC----------------------------------CCCeEEEEEcccchhhHHH
Q psy8873 178 EHLSSADLVEEIPAGNSRFVKISGIQN----------------------------------PGRTLTVVVRGSNKLVLDE 223 (841)
Q Consensus 178 ~~lG~~~~~~~~~ig~~~~~~~~g~~~----------------------------------~~~~~tI~lrG~t~~~l~e 223 (841)
++||+|++|++.+ +++++++|+.. .++.|||+|||+|+.+++|
T Consensus 327 ~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E 403 (555)
T PTZ00114 327 SMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNE 403 (555)
T ss_pred HHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHH
Confidence 9999999999886 66777777651 2479999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q psy8873 224 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD--TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 301 (841)
Q Consensus 224 ~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~--~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~ 301 (841)
+||+++||++++++++++| +|||||++|++++.+|.+++. +.++++|+++++|++||+.|||+||+|||+|+.+++.
T Consensus 404 ~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 482 (555)
T PTZ00114 404 KKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVE 482 (555)
T ss_pred HHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999998 999999999999999999875 6789999999999999999999999999999999999
Q ss_pred HHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 302 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 302 ~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+|++ .++.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+...
T Consensus 483 ~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 483 KILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred HHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCccc
Confidence 9986 3456799999999999999999999999999999999999999999999998866553
|
|
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=407.87 Aligned_cols=334 Identities=23% Similarity=0.326 Sum_probs=296.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
.|...|+++++..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++|| +|+|+.
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd 82 (541)
T PRK12851 3 AKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTN 82 (541)
T ss_pred cceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhh
Confidence 467889999999999999999999999999999999999999999999999999999999999 777740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 83 ~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv 162 (541)
T PRK12851 83 DVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLV 162 (541)
T ss_pred HhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHH
Confidence
Q ss_pred --------------------------------------cc----------eeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HK----------VVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
.+ .++.++.-+ +.-+. ..+.+.++++.+.
T Consensus 163 ~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-~~~~i~~~l~~i~ 241 (541)
T PRK12851 163 AEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-NLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-cHHHHHHHHHHHH
Confidence 00 001111000 00011 1356889999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeecc-----ccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~-----~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|..+++ +++++ +++++|+|||++|||++++ +++++++++
T Consensus 242 ~~~~~lvi~~~~-----I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~ 316 (541)
T PRK12851 242 QSGKPLLIIAED-----VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQ 316 (541)
T ss_pred HhCcCEEEECCC-----CChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHH
Confidence 999999999998 89999999999886 66664 8999999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++.+ ++|+++.||+.+ |..+||+|||+|+.+++|+|
T Consensus 317 LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~e 393 (541)
T PRK12851 317 LGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKK 393 (541)
T ss_pred cCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 99999999885 889999988663 23889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (541)
T PRK12851 394 DRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE 471 (541)
T ss_pred HHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999999876 899999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+..
T Consensus 472 ~~~----~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 472 KPG----GYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred hCC----CeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence 763 79999999999999999999999999999999999999999999999876544
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=402.69 Aligned_cols=336 Identities=20% Similarity=0.323 Sum_probs=297.5
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccc----ccccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI----HPAAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~----~p~ak~~--------- 84 (841)
|+..||.++|..|++|++.++++|||||||+||||||+++.|+|+|||||+||+|+++++ ||+++|+
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 678899999999999999999999999999999999999999999999999999999999 9998874
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~ 163 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLA 163 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHH
Confidence
Q ss_pred --------c----------------------------cceeecCHH----HH--------H-HHHHHHHHHHHHHHHHHH
Q psy8873 85 --------D----------------------------HKVVVSDYS----AM--------D-RVLKEERAYILNIVKQIK 115 (841)
Q Consensus 85 --------~----------------------------~~~~i~~~~----~l--------~-~~~~~E~~~i~~~l~~i~ 115 (841)
. +++.++++. ++ + ++.. -+.+.++++.+.
T Consensus 164 ~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~--~~~i~~~l~~i~ 241 (546)
T PRK14104 164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSS--LNELLPLLEAVV 241 (546)
T ss_pred HHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcC--HHHHHHHHHHHH
Confidence 0 011111110 00 1 1111 156889999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhh------hheeeecccc-----chhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDK------IKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~------~~i~~v~~~~-----~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ +++.|+++|.. .+|+++++++ +++|+|||++|||+++++ ++++++++
T Consensus 242 ~~g~~lvI~~~~-----i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~ 316 (546)
T PRK14104 242 QTGKPLVIVAED-----VEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQM 316 (546)
T ss_pred HhCcCEEEECCC-----CcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHH
Confidence 999999999999 78889998874 6788887776 789999999999999998 99999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+++++ ++++++++.||..+ ++.|||+|||+|+.+++|+|
T Consensus 317 LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~ 393 (546)
T PRK14104 317 LGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERK 393 (546)
T ss_pred CCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 999999875 57899999998764 57999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|+++. ..++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (546)
T PRK14104 394 DRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILE 471 (546)
T ss_pred HHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHh
Confidence 99999999999999998 99999999999999999884 46899999999999999999999999999999999999987
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDI 368 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~ 368 (841)
.| ..++|+|+.+|.+.||++.|||||+.||++++++|+++|+++|++|.+|.+.++++..
T Consensus 472 ~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~ 531 (546)
T PRK14104 472 KE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGA 531 (546)
T ss_pred cC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 54 3479999999999999999999999999999999999999999999999887766544
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=404.56 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhh----hheeeeccccc-----hhHHHHHHHhCCeEee----
Q psy8873 104 RAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK----IKVLVVKDIER-----EDIEFVCKTLNTRPIA---- 170 (841)
Q Consensus 104 ~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~----~~i~~v~~~~~-----~~L~~ia~~tGa~~i~---- 170 (841)
+..+.++++.+.+.++|++|++++|++++ ++..++++ ++|++++++++ ++|+|||.+|||++++
T Consensus 230 ~~~i~~~l~~i~~~~~~lvi~~~~i~~~a---l~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~ 306 (529)
T CHL00093 230 QQDLLPILEQVTKTKRPLLIIAEDVEKEA---LATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAG 306 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCChHH---HHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEeccccc
Confidence 35788999999999999999999954433 34445566 59999999954 7799999999999999
Q ss_pred -cccccCCCCCcccceeeeeecCCceEEEEEc---------ccC------------------------CCCeEEEEEccc
Q psy8873 171 -SLDHFLPEHLSSADLVEEIPAGNSRFVKISG---------IQN------------------------PGRTLTVVVRGS 216 (841)
Q Consensus 171 -~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g---------~~~------------------------~~~~~tI~lrG~ 216 (841)
+++++++++||+|+.+++.+ ++++++++ |+. .|..+||+|||+
T Consensus 307 ~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~ 383 (529)
T CHL00093 307 LSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAA 383 (529)
T ss_pred CCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 79999999999999999874 78888873 322 125889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHcCCC
Q psy8873 217 NKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD-TVSGIDAYCFRAFAQALEVIPLTLAENAGLN 295 (841)
Q Consensus 217 t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~-~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d 295 (841)
|+.+++|+||+++||++++|+++++| +|||||++||+++.+|+++++ +.++++|+++++|++||+.|||+||+|||+|
T Consensus 384 t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d 462 (529)
T CHL00093 384 TETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKN 462 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998 999999999999999999987 7899999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 296 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.+++.+++.. +.++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+
T Consensus 463 ~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 463 GSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999753 34799999999999999999999999999999999999999999999998754
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=401.19 Aligned_cols=329 Identities=21% Similarity=0.326 Sum_probs=292.4
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~--------- 84 (841)
|+..||+++|.+|++|++.++++|||||||+||||||+++.|+++|||||+||+|+++++|| +++++
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 56789999999999999999999999999999999999999999999999999999999999 78764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence
Q ss_pred --------c--------------------------------------cceeecCHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8873 85 --------D--------------------------------------HKVVVSDYSAM--DRVLKEERAYILNIVKQIKK 116 (841)
Q Consensus 85 --------~--------------------------------------~~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~~ 116 (841)
. ++..+++|..+ +..+.. .+.+.++++.+.+
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~-~~~i~~~l~~i~~ 240 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN-IKDLLPLLEKVAQ 240 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC-HHHHHHHHHHHHH
Confidence 0 00111111111 111122 2567899999999
Q ss_pred hCCCeEEEecchhhhhHHHHHHHHHhhh------heeeeccccc-----hhHHHHHHHhCCeEee-----cccccCCCCC
Q psy8873 117 AGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEHL 180 (841)
Q Consensus 117 ~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~~-----~~L~~ia~~tGa~~i~-----~l~~l~~~~l 180 (841)
.|+||||++++ +++.|+++|..+ +|++++++++ ++|+|||++|||++++ +++++++++|
T Consensus 241 ~g~~lvi~~~~-----i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~L 315 (524)
T TIGR02348 241 SGKPLLIIAED-----VEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDL 315 (524)
T ss_pred hCcCEEEECCC-----CChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHC
Confidence 99999999998 799999999876 8899988754 7899999999999999 8999999999
Q ss_pred cccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHHH
Q psy8873 181 SSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAAR 226 (841)
Q Consensus 181 G~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k~ 226 (841)
|+|+.+++.+ +++++++|+..+ |+.+||+|||+|+.+++|+||
T Consensus 316 G~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er 392 (524)
T TIGR02348 316 GKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKL 392 (524)
T ss_pred CCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 9999999874 789999887553 347999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhh
Q psy8873 227 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 306 (841)
Q Consensus 227 ~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~ 306 (841)
+++||++++|+++++| +|||||++||+++.+|.+ +.+.++++|+++++|++||+.|||+||+|||+|+.+++++|++.
T Consensus 393 ~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 470 (524)
T TIGR02348 393 RVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES 470 (524)
T ss_pred HHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999999999998 999999999999999998 77889999999999999999999999999999999999999865
Q ss_pred ccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 307 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 307 ~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.+ ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|++
T Consensus 471 --~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 471 --KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred --CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 23 4899999999999999999999999999999999999999999999965
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=398.69 Aligned_cols=344 Identities=21% Similarity=0.336 Sum_probs=290.2
Q ss_pred hhhhhccch--HHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc-----
Q psy8873 16 AFKDKSKAT--DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM----- 84 (841)
Q Consensus 16 ~~k~~~~~~--~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~----- 84 (841)
+-|++.||+ +||.++++|++.|+++|+|||||+||||||++++|+|+|||||+||+|+|+++|| +|+|+
T Consensus 55 ~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 134 (600)
T PLN03167 55 AAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 134 (600)
T ss_pred hcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence 457889999 7999999999999999999999999999999999999999999999999999999 57764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 135 ~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~ 214 (600)
T PLN03167 135 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGN 214 (600)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHH
Confidence
Q ss_pred ---------------------------------------ccceeecCHHHH------------HHHHHHHHHHHHHHHHH
Q psy8873 85 ---------------------------------------DHKVVVSDYSAM------------DRVLKEERAYILNIVKQ 113 (841)
Q Consensus 85 ---------------------------------------~~~~~i~~~~~l------------~~~~~~E~~~i~~~l~~ 113 (841)
.++++++|++.+ +..+... +.+.++++.
T Consensus 215 liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~-~~l~~~le~ 293 (600)
T PLN03167 215 MIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNA-RDLIGILED 293 (600)
T ss_pred HHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCH-HHHHHHHHH
Confidence 001111111110 1111222 467778899
Q ss_pred HHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCCCcc
Q psy8873 114 IKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSS 182 (841)
Q Consensus 114 i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~lG~ 182 (841)
+.+.++|+||++++|+++++..++++.+. ..+++++++++ +++|+|||.+|||++++ +++++++++||+
T Consensus 294 i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~ 373 (600)
T PLN03167 294 AIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT 373 (600)
T ss_pred HHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999544444444433333 68899999986 77899999999999999 789999999999
Q ss_pred cceeeeee-----cCC--------ceEEEEEccc------------------CCCCeEEEEEcccchhhHHHHHHHHHHH
Q psy8873 183 ADLVEEIP-----AGN--------SRFVKISGIQ------------------NPGRTLTVVVRGSNKLVLDEAARSLHDA 231 (841)
Q Consensus 183 ~~~~~~~~-----ig~--------~~~~~~~g~~------------------~~~~~~tI~lrG~t~~~l~e~k~~l~da 231 (841)
|+++++++ +|+ +++++|+++. .++.+++|+|||+|+.+++|+||+++||
T Consensus 374 a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DA 453 (600)
T PLN03167 374 AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 453 (600)
T ss_pred eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHH
Confidence 99999886 665 4777776653 2233455559999999999999999999
Q ss_pred HHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC
Q psy8873 232 LCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY-CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG 310 (841)
Q Consensus 232 l~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~-~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~ 310 (841)
++++|+++++| +|||||++||+++.+|++++.+..+.+|+ ++++|++||+.|||+||+|||+|+.+++.+|++.+
T Consensus 454 l~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~--- 529 (600)
T PLN03167 454 LNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND--- 529 (600)
T ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC---
Confidence 99999999999 99999999999999999998888787774 59999999999999999999999999999998543
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+.++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+.
T Consensus 530 ~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~ 583 (600)
T PLN03167 530 NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKE 583 (600)
T ss_pred CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 457999999999999999999999999999999999999999999999987543
|
|
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=330.14 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=216.0
Q ss_pred chhhhhhHHHHHHHHHHhhhcCCC-CCCccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEe
Q psy8873 443 VVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520 (841)
Q Consensus 443 ~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~ 520 (841)
....|.++|++++++|+..+.+.. ..+.+|++ +|+|++++||+++||++++|++|++++....||+.++||||++++|
T Consensus 15 ~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 15 NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence 356789999999999999996432 22468876 6999999999999999999999999995559999999999999999
Q ss_pred ecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChh
Q psy8873 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 600 (841)
Q Consensus 521 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 600 (841)
+|++++++ +++++++++++.|++++.+++++|++.|+++||++++| ++++++||.++||+++++++++
T Consensus 95 ~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I-----~~~a~~~l~k~gI~~v~~v~~~ 162 (261)
T cd03334 95 PLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSV-----SRIAQDLLLEAGITLVLNVKPS 162 (261)
T ss_pred eecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCcc-----CHHHHHHHHHCCCEEEEecCHH
Confidence 99999986 35789999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCccccc-CCCCCCCCceeeeeEEEEEecC-----eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHH
Q psy8873 601 DIEFVCKTLNTRPIAS-LDHFLPEHLSSADLVEEIPAGN-----SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLH 674 (841)
Q Consensus 601 ~L~~ia~~tGa~ii~~-l~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~ 674 (841)
+|+|||++|||+++++ .++++++++|+|++|++.++|+ ++|++|++|+.+ +.+||+|||+|+++++|+||+++
T Consensus 163 dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-~~~TIlLRG~t~~~lde~eR~i~ 241 (261)
T cd03334 163 VLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-LGCTILLRGGDLEELKKVKRVVE 241 (261)
T ss_pred HHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-ceeEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999 4589999999999999999996 699999999876 89999999999999999999999
Q ss_pred HHHHHHHHHhcCCeE
Q psy8873 675 DALCVVRCLVKQRAL 689 (841)
Q Consensus 675 dal~~~~~~l~~~~v 689 (841)
||+++++++..++.+
T Consensus 242 Dal~v~~~~~le~~~ 256 (261)
T cd03334 242 FMVFAAYHLKLETSF 256 (261)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999999999888744
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=290.00 Aligned_cols=208 Identities=41% Similarity=0.618 Sum_probs=196.2
Q ss_pred HHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCc
Q psy8873 429 ENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPK 508 (841)
Q Consensus 429 ~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~ 508 (841)
+.|.++|+|+++||+ +.|.+.+++++++|+..++++. +.++.++|+|++.+||++.||++++|++|++++.+..||+
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~ 78 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--RMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPK 78 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--CCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCe
Confidence 478999999999999 9999999999999999997632 2577789999999999999999999999999994459999
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||+|++++++|++ +|+++++| ++.++++|.+
T Consensus 79 ~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I-----~~~al~~l~~ 112 (209)
T cd03333 79 RLENAKILLLDCPLEY-----------------------------------------VVIAEKGI-----DDLALHYLAK 112 (209)
T ss_pred EcCCCcEEEEeCCeeE-----------------------------------------EEEecCcc-----cHHHHHHHHH
Confidence 9999999999999985 99999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+||++++++++++|+|||++|||++++++++++++++|+|++|++.++|++++++|++|+.+ +.|||+|||+|+.+++|
T Consensus 113 ~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-~~~tIllrG~t~~~l~e 191 (209)
T cd03333 113 AGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-KAATILLRGATEVELDE 191 (209)
T ss_pred CCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy8873 669 AARSLHDALCVVRCLVKQ 686 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~ 686 (841)
++|+++||++++++++++
T Consensus 192 ~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 192 VKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >KOG0356|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=295.88 Aligned_cols=351 Identities=20% Similarity=0.285 Sum_probs=300.8
Q ss_pred CCCCCCcccchhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cc
Q psy8873 6 SGDSKNSKSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AA 81 (841)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~a 81 (841)
++.+++...+..|++.||.++|..+++|++.||++|.+||||||||+++.++||+|+|||||+|++++++++++ +|
T Consensus 5 ~~~~~~~~~r~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~ga 84 (550)
T KOG0356|consen 5 LGRSQTKCVRYAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGA 84 (550)
T ss_pred ccCCcccccccccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhcc
Confidence 45555666668899999999999999999999999999999999999999999999999999999999999887 34
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy8873 82 KMM----------------------------------------------------------------------------- 84 (841)
Q Consensus 82 k~~----------------------------------------------------------------------------- 84 (841)
+++
T Consensus 85 klvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiS 164 (550)
T KOG0356|consen 85 KLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATIS 164 (550)
T ss_pred HHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 331
Q ss_pred ------------------------------------------------ccceeecCHHHHH------HHHHH-----HHH
Q psy8873 85 ------------------------------------------------DHKVVVSDYSAMD------RVLKE-----ERA 105 (841)
Q Consensus 85 ------------------------------------------------~~~~~i~~~~~l~------~~~~~-----E~~ 105 (841)
-+++++++++... .++-. --+
T Consensus 165 AngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~ 244 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQ 244 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHH
Confidence 1466666664321 01111 125
Q ss_pred HHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhhe-----eeeccccchhHHHHHHHhCCeEee------ccc
Q psy8873 106 YILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKV-----LVVKDIEREDIEFVCKTLNTRPIA------SLD 173 (841)
Q Consensus 106 ~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i-----~~v~~~~~~~L~~ia~~tGa~~i~------~l~ 173 (841)
.|.+.+|...+...|+++++++++++++..++++.|+ ..++ |.|++.++..+.|+|.+|||+++. +++
T Consensus 245 ~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le 324 (550)
T KOG0356|consen 245 SIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLE 324 (550)
T ss_pred HHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccc
Confidence 7888899999999999999999999999999999998 4444 555666666799999999999986 567
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc----------------------------------ccCCCCeEEEEEcccchh
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG----------------------------------IQNPGRTLTVVVRGSNKL 219 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g----------------------------------~~~~~~~~tI~lrG~t~~ 219 (841)
..++++||+|..+... .+..+.+.| .+..+++++|.++|.||.
T Consensus 325 ~~~~~dLG~~~evvvt---kd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~ 401 (550)
T KOG0356|consen 325 DAKLEDLGEVGEVVVT---KDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEV 401 (550)
T ss_pred cCchhhcCcceeEEEe---cCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchh
Confidence 7888999999877644 444445544 122478999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHH
Q psy8873 220 VLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299 (841)
Q Consensus 220 ~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~ 299 (841)
+++|+|++++||+|++++++++| +|||||+++++|+..|.++....+.+++.|++++.+||..|..+||+|||.|+..+
T Consensus 402 Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~v 480 (550)
T KOG0356|consen 402 EVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVV 480 (550)
T ss_pred hhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHH
Confidence 99999999999999999999999 99999999999999999986655667888999999999999999999999999999
Q ss_pred HHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 300 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 300 ~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+.|++. ..||||+.+++|+||++.||+||++|.+.|++.|..+|+++++++.++.+.++..
T Consensus 481 v~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 481 VEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999983 1799999999999999999999999999999999999999999999999988765
|
|
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=229.51 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEee
Q psy8873 91 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIA 170 (841)
Q Consensus 91 ~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~ 170 (841)
+++++++.++++|++++.+++++|++.|++||+++++ |+++|++||.++||++++++++.+|+|||++|||++++
T Consensus 103 ~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~-----I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~ 177 (261)
T cd03334 103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKS-----VSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIIS 177 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCc-----cCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEec
Confidence 5678899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cc-cccCCCCCcccceeeeeecCC-----ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 171 SL-DHFLPEHLSSADLVEEIPAGN-----SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 171 ~l-~~l~~~~lG~~~~~~~~~ig~-----~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
++ ++++++.||+|++|+++++|+ +++++|+||+.+ .+|||+|||+|+.+++|+||+++||+++++++..|+++
T Consensus 178 ~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~ 256 (261)
T cd03334 178 SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSF 256 (261)
T ss_pred ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 95 589999999999999999996 699999999875 79999999999999999999999999999999999854
Q ss_pred c
Q psy8873 245 I 245 (841)
Q Consensus 245 v 245 (841)
+
T Consensus 257 ~ 257 (261)
T cd03334 257 L 257 (261)
T ss_pred H
Confidence 4
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >KOG0230|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-21 Score=225.72 Aligned_cols=239 Identities=20% Similarity=0.288 Sum_probs=213.9
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCC-CCcccc-cceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeec
Q psy8873 445 SQQASLLAPIAVDAVLKVVNPQR-DTNVDL-KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCI 522 (841)
Q Consensus 445 ~~~~~~ls~lv~~A~~~v~~~~~-~~~~d~-~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~L 522 (841)
..|.+.+..|+++|...+.++.. .+..|+ ++|+|+++.||+..||+++.|+++.+....+.|..+.++|+|+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 67999999999999999987543 445665 6999999999999999999999999999656999999999999999999
Q ss_pred CCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHH
Q psy8873 523 SPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 602 (841)
Q Consensus 523 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 602 (841)
+|++... ....++.+.++|.++++..+.+|...+++++++.++| +..|+++|...+|..+-+++..-|
T Consensus 411 eyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksV-----S~~aqe~L~~k~I~lvlnvK~s~l 478 (1598)
T KOG0230|consen 411 EYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSV-----SRIAQELLLDKGISLVLNVKRSLL 478 (1598)
T ss_pred hhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechH-----HHHHHHHhhccCeEEEEeccHHHH
Confidence 9998752 2344566677789999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHcCCcccccCCCCCCCCceeeeeEEEEEec-----CeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 603 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG-----NSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 603 ~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
+||+++|||.|+++++.++...+|+|+.+++..+- .+.+++|++|..+ .+|||+|||....++.++++.++-++
T Consensus 479 eRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~-lG~TiLLrG~~~~eLkkVK~Vvq~~v 557 (1598)
T KOG0230|consen 479 ERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP-LGCTILLRGDSLEELKKVKHVVQYLV 557 (1598)
T ss_pred HHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-CCceEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987754 5789999999998 99999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHH
Q psy8873 678 CVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~ 696 (841)
.++.++.-+..++.--|+.
T Consensus 558 ~aay~l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 558 FAAYHLALETSFLADEGAS 576 (1598)
T ss_pred HHHHHHHHhhhhhhccCCc
Confidence 9998876665566555554
|
|
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=178.08 Aligned_cols=115 Identities=37% Similarity=0.699 Sum_probs=110.6
Q ss_pred eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEE
Q psy8873 121 VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200 (841)
Q Consensus 121 lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~ 200 (841)
+|+++++ |++.|+++|.++||++++++++.+|+|||++|||++++++++++++.||+|+.|++.+++++++++|+
T Consensus 95 vii~~~~-----I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~ 169 (209)
T cd03333 95 VVIAEKG-----IDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIE 169 (209)
T ss_pred EEEecCc-----ccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEE
Confidence 8999887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 201 g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+|+.+ .+|||+|||+|+.+++|.||+++||++++++++++
T Consensus 170 ~~~~~-~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 170 GCKGG-KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred cCCCC-CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99864 79999999999999999999999999999999875
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >KOG0230|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-15 Score=174.98 Aligned_cols=175 Identities=19% Similarity=0.297 Sum_probs=156.1
Q ss_pred hhccccccccccccceeec----CHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheee
Q psy8873 73 QMNVIHPAAKMMDHKVVVS----DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 148 (841)
Q Consensus 73 ~~~~~~p~ak~~~~~~~i~----~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~ 148 (841)
.-+.++|...++...++.+ +...++.++.||.++++.++.+|...++++++++++ |++.|+++|...+|..
T Consensus 395 ~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeks-----VS~~aqe~L~~k~I~l 469 (1598)
T KOG0230|consen 395 ATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKS-----VSRIAQELLLDKGISL 469 (1598)
T ss_pred hhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEech-----HHHHHHHHhhccCeEE
Confidence 3445666666666555443 357788999999999999999999999999999998 8999999999999999
Q ss_pred eccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecC-----CceEEEEEcccCCCCeEEEEEcccchhhHHH
Q psy8873 149 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG-----NSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 223 (841)
Q Consensus 149 v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig-----~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e 223 (841)
+-++++..|+||+|+|||.+++++|.++...||+|..|++..+- .+++++|+||..+ .+|||+|||+...+|++
T Consensus 470 vlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~-lG~TiLLrG~~~~eLkk 548 (1598)
T KOG0230|consen 470 VLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP-LGCTILLRGDSLEELKK 548 (1598)
T ss_pred EEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-CCceEEecCCCHHHHHH
Confidence 99999999999999999999999999999999999999877665 5678999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChHHH
Q psy8873 224 AARSLHDALCVVRCLVKQRALIAGGGAPEI 253 (841)
Q Consensus 224 ~k~~l~dal~~~~~~~~~~~vvpGgGa~e~ 253 (841)
+|+.+..++.++++...|..++..-|+..-
T Consensus 549 VK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 549 VKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 999999999999999999888888887554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 841 | ||||
| 3iyg_D | 518 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 0.0 | ||
| 3p9d_D | 528 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-146 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-76 | ||
| 3aq1_B | 500 | Open State Monomer Of A Group Ii Chaperonin From Me | 3e-75 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 6e-75 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 1e-74 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 4e-74 | ||
| 3izi_A | 513 | Mm-Cpn Rls With Atp Length = 513 | 2e-73 | ||
| 3rus_A | 543 | Crystal Structure Of Cpn-Rls In Complex With Adp Fr | 2e-73 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 5e-73 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 5e-73 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 2e-69 | ||
| 3izk_A | 491 | Mm-Cpn Rls Deltalid With Atp Length = 491 | 3e-68 | ||
| 3izn_A | 491 | Mm-Cpn Deltalid With Atp Length = 491 | 8e-68 | ||
| 3iyf_A | 521 | Atomic Model Of The Lidless Mm-Cpn In The Open Stat | 8e-68 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 2e-67 | ||
| 3j02_A | 491 | Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun | 9e-67 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 5e-66 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 6e-66 | ||
| 3iyg_G | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-52 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 5e-51 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 9e-48 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-47 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-46 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 8e-43 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 4e-42 | ||
| 3p9d_C | 590 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 5e-40 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-36 | ||
| 3p9d_F | 546 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-33 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 8e-33 | ||
| 3iyg_Q | 512 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 5e-32 | ||
| 1ass_A | 159 | Apical Domain Of The Chaperonin From Thermoplasma A | 2e-15 | ||
| 1e0r_B | 159 | Beta-Apical Domain Of Thermosome Length = 159 | 1e-10 | ||
| 3rtk_A | 546 | Crystal Structure Of Cpn60.2 From Mycobacterium Tub | 4e-04 |
| >pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 | Back alignment and structure |
|
| >pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
| >pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 | Back alignment and structure |
|
| >pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 | Back alignment and structure |
|
| >pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 | Back alignment and structure |
|
| >pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 614 bits (1587), Expect = 0.0
Identities = 327/483 (67%), Positives = 401/483 (83%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 69 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 128
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 129 DMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 189 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 247
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 248 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 307
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP-AGNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 308 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 367
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+
Sbjct: 368 VVRGSNKLVIEEAERSIHDALCVIRCLVKK------------------------------ 397
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
RALIAGGGAPEIEL+L+LT+Y+ T+SG+++YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 398 ---RALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPIS 454
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 455 TVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 514
Query: 837 VNT 839
VNT
Sbjct: 515 VNT 517
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-125
Identities = 203/277 (73%), Positives = 250/277 (90%), Gaps = 1/277 (0%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
MD+++VVSDY MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP-AGNSRFVKISGI 202
+K++VVKDIEREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGC 358
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
+PG+T+T+VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y
Sbjct: 359 ASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY 418
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA 322
+ T+SG+++YC RAFA A+EVIP TLAENAGLNPISTVTELRNRHAQGE TTGINVRKG
Sbjct: 419 SRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGG 478
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD++
Sbjct: 479 ISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 515
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-33
Identities = 52/70 (74%), Positives = 60/70 (85%)
Query: 15 SAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
SA++D+ K IR SNI AAKAVADAIRTSLGP+GMDKMIQ G+VTITNDGATILKQM
Sbjct: 1 SAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQM 60
Query: 75 NVIHPAAKMM 84
V+HPAA+M+
Sbjct: 61 QVLHPAARML 70
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 610 bits (1576), Expect = 0.0
Identities = 269/485 (55%), Positives = 363/485 (74%), Gaps = 37/485 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE+S AQD EAGDGTTSVVI+ G+LL AAE+LL+KGIHPT I+D+FQ AA + V+IL
Sbjct: 77 MLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILL 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EM ++L+DRE L+++A+TSL+SK+VSQ +S LAP+AVD+VLK+ + NVDL DI+
Sbjct: 137 EMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSK-NVDLNDIR 195
Query: 478 VIRKLGGTVEDTELVDGLVFTQK-SANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++K+GGT++DTE++DG+V TQ + GP R EKAKIGLIQF ISPPK D ++ ++V+
Sbjct: 196 LVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVN 255
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DLA+HFL K+ ++VVKD
Sbjct: 256 DYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKD 315
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--GRTL 654
IERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+ V+++GI+N T+
Sbjct: 316 IEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTV 375
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
+VV+RG+N +++DE RSLHDALCV+RCLVK+
Sbjct: 376 SVVIRGANNMIIDETERSLHDALCVIRCLVKE---------------------------- 407
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
R LIAGGGAPEIE+S +L+K A ++ G+ A+ ++ FA ALEVIP TLAENAGLN
Sbjct: 408 -----RGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNS 462
Query: 775 ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834
I VTELR++H GE GI+VR+ TN EE+++QP+LVSTSAITL++E V+SIL+ID
Sbjct: 463 IKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRID 522
Query: 835 DIVNT 839
DI +
Sbjct: 523 DIAFS 527
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 384 bits (988), Expect = e-124
Identities = 165/278 (59%), Positives = 223/278 (80%), Gaps = 2/278 (0%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ ++V+DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DLA+HFL K
Sbjct: 248 TENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSK 307
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ ++VVKDIERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+ V+++GI+
Sbjct: 308 LNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIR 367
Query: 204 NP--GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
N T++VV+RG+N +++DE RSLHDALCV+RCLVK+R LIAGGGAPEIE+S +L+K
Sbjct: 368 NNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSK 427
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
A ++ G+ A+ ++ FA ALEVIP TLAENAGLN I VTELR++H GE GI+VR+
Sbjct: 428 EARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRS 487
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
TN EE+++QP+LVSTSAITL++E V+SIL+IDDI
Sbjct: 488 GTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIA 525
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-32
Identities = 43/70 (61%), Positives = 58/70 (82%)
Query: 15 SAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
+ FK+K K ++R +NI AA++VADAIRTSLGP+GMDKMI+ S GE+ I+NDG TILKQM
Sbjct: 9 ATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQM 68
Query: 75 NVIHPAAKMM 84
++HP A+M+
Sbjct: 69 AILHPVARML 78
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 594 bits (1534), Expect = 0.0
Identities = 156/483 (32%), Positives = 262/483 (54%), Gaps = 40/483 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD GDGTT+ VI+AG LL+ A+ L+++ +HPT IS+ ++ A+ + ++
Sbjct: 79 MMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVID 138
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDI 476
E+ST I ++ L+K A TSLNSK S LA I+ +AV V + VD +I
Sbjct: 139 EISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNI 198
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+V++K GG ++DT+L++G++ ++ + P V+ AKI L+ + K + D + +
Sbjct: 199 QVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIE 258
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D S + + L +E + +V +IK G NV++ QK I D+A H+L + + V+
Sbjct: 259 DPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRR 313
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D++ + K ++++D L +A+ VE++ G ++G +NP + +++
Sbjct: 314 VKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSI 372
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+VRG + V+DE RS+ D+L VV ++
Sbjct: 373 LVRGETEHVVDEMERSITDSLHVVASALED------------------------------ 402
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
A AGGGA E++ +L YA + G FA A+E IP LAENAGL+PI
Sbjct: 403 ---GAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPID 459
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ +LR HA+G T GINV G I ++++ V++P+ V AI +TE IL+IDD+
Sbjct: 460 ILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDV 519
Query: 837 VNT 839
+ T
Sbjct: 520 IAT 522
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-118
Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 251 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSR 305
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + ++++VRG + V+DE RS+ D+L VV ++ A AGGGA E++ +L YA
Sbjct: 366 NP-KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYA 424
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
+ G FA A+E IP LAENAGL+PI + +LR HA+G T GINV G I
Sbjct: 425 QKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEI 484
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++++ V++P+ V AI +TE IL+IDD+ + +
Sbjct: 485 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDV-IATKSSSSSSNPPK 533
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D NI AA A+++++R+SLGPRGMDKM+ S G++ ITNDG TILK+M+V
Sbjct: 14 TKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVE 73
Query: 78 HPAAKMM 84
HPAAKMM
Sbjct: 74 HPAAKMM 80
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 593 bits (1532), Expect = 0.0
Identities = 167/481 (34%), Positives = 268/481 (55%), Gaps = 40/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE++K QD EAGDGTT+ V++AG LL AE+LL + IHP+ I+ + AA K EIL
Sbjct: 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILD 140
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDI 476
E++ + D E L+K AATS+ K LLA +AV+AV +V + VDL +I
Sbjct: 141 EIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
K +K G VE++ELV G+V ++ + PKRVE AKI LI + KT+ D K+ ++
Sbjct: 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINIT 260
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
+ L++E + ++V I + G NV+ VQK I DLA H+L K ++ V+
Sbjct: 261 SPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRR 315
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D+E + K + + ++ PE L A++VEE + + G +NP + +T+
Sbjct: 316 VKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTI 374
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG + V+DE R+L DA+ VV+ +++
Sbjct: 375 LIRGGTEHVIDEVERALEDAVKVVKDVMED------------------------------ 404
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
A++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENAGL+ +
Sbjct: 405 ---GAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVE 461
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD+
Sbjct: 462 MLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
Query: 837 V 837
+
Sbjct: 522 I 522
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-118
Identities = 94/291 (32%), Positives = 166/291 (57%), Gaps = 6/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAK 307
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +
Sbjct: 308 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 367
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + +T+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +YA
Sbjct: 368 NP-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
V G +A FA AL++IP TLAENAGL+ + + ++ + H GI+V +G
Sbjct: 427 KQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKP 486
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGT 374
++LE+ +++PL V AI ++E IL+IDD++ + + G G
Sbjct: 487 ADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEGGQGGGM 537
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-27
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++
Sbjct: 16 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQ 75
Query: 78 HPAAKMM 84
HPAAKMM
Sbjct: 76 HPAAKMM 82
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 592 bits (1528), Expect = 0.0
Identities = 159/482 (32%), Positives = 269/482 (55%), Gaps = 41/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD E GDGTT+ +++G LL AE+L+ KG+H T IS+ ++ AA KC EIL
Sbjct: 31 MIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILE 90
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD--TNVDLKD 475
++ I+ D LIK A T++ K L+ + V AV +V + D L++
Sbjct: 91 TITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLEN 150
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IK+ ++ GG+++D+EL+DGLV ++ ++ N P++VE AKI L+ + KT++D ++ +
Sbjct: 151 IKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKI 210
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ M L +E + + +++ +G NV+ QK I D+A ++++K + V+
Sbjct: 211 TSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG-----IDDMAQYYIEKAGIYAVR 265
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D++ + K I LD E + +A LVEE + ++G QN + +T
Sbjct: 266 RVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-KAVT 324
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
V++ G + V+D +L+DAL VV +++
Sbjct: 325 VLLHGGTEHVVDSLDHALNDALHVVGVVIED----------------------------- 355
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
++ GGG+ E+ELSL+L++YA T+ G + FA+ALEVIP+ LAENAGL+PI
Sbjct: 356 ----GKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPI 411
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ ELR++H +G G+NV G + ++ E +V++PL + T AI + E IL+IDD
Sbjct: 412 DIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDD 471
Query: 836 IV 837
+V
Sbjct: 472 VV 473
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-119
Identities = 94/290 (32%), Positives = 165/290 (56%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++ M L +E + + +++ +G NV+ QK I D+A ++++K
Sbjct: 204 VDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGI-----DDMAQYYIEK 258
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K I LD E + +A LVEE + ++G Q
Sbjct: 259 AGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +TV++ G + V+D +L+DAL VV +++ ++ GGG+ E+ELSL+L++YA
Sbjct: 319 NS-KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T+ G + FA+ALEVIP+ LAENAGL+PI + ELR++H +G G+NV G +
Sbjct: 378 STLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEV 437
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ E +V++PL + T AI + E IL+IDD+ V + + G G
Sbjct: 438 VDMWENDVIEPLRIKTQAINAAMEATVMILRIDDV-VASKGSANQGMGPG 486
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 53 MIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
M+ S G++ ITNDGATILK+M++ HPAAKM+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMI 32
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 163/481 (33%), Positives = 269/481 (55%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + VD IK
Sbjct: 137 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK--VDKDLIK 194
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 195 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 254
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKG-----IDDLAQHYLAKEGIVAARRV 309
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K IA++ + L A LVEE + + ++P + +T++
Sbjct: 310 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 368
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++
Sbjct: 369 IRGTTEHVIEEVARAVDDAVGVVGCTIED------------------------------- 397
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
+++GGG+ E+ELS+KL +YA+ +SG + RAFA ALEVIP TLAENAGL+ I
Sbjct: 398 --GRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEI 455
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 456 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 515
Query: 837 V 837
+
Sbjct: 516 I 516
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 366 bits (941), Expect = e-117
Identities = 100/291 (34%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 246 TDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAK 300
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ + +++ D+E + K IA++ + L A LVEE + + +
Sbjct: 301 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 360
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA
Sbjct: 361 HP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGA 322
+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA
Sbjct: 420 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 479
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
+ ++ E VV+PL V T AI + E+ +L+IDD++ + GD
Sbjct: 480 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAPDMGDM 530
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-28
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V
Sbjct: 12 MKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVE 71
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 72 HPAAKML 78
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 589 bits (1521), Expect = 0.0
Identities = 163/481 (33%), Positives = 262/481 (54%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SKAQD GDGTT+ V+++G LL+ AE LL +G+HPT IS+ ++ A + +I+
Sbjct: 80 MIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIID 139
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDI 476
E++ T D L K A T+L+ K LA + V AV V + T VD +I
Sbjct: 140 EIAEKST--DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANI 197
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
KV +K GG+V DT+ + G+V ++ + P V+ AKI LI + KT+++ KV +S
Sbjct: 198 KVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS 257
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D S + L +E +V++IKK+G NV+L QK I D+A H+L K + V+
Sbjct: 258 DPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRR 312
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D+E + K + + LD P L A+ VEE G+ R + G +NP + +++
Sbjct: 313 VKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSI 371
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG V+ E R+L+DA+ VV +
Sbjct: 372 LIRGGTDHVVSEVERALNDAIRVVAITKED------------------------------ 401
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
+ GGGA E EL+++L KYA++V G + AFA+ALE+IP TLAENAG++PI+
Sbjct: 402 ---GKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPIN 458
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
T+ +L+ +G + G+++ + ++ + VV PL V T A+ + E IL+IDD+
Sbjct: 459 TLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDV 518
Query: 837 V 837
+
Sbjct: 519 I 519
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 369 bits (951), Expect = e-119
Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 6/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 250 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 304
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +
Sbjct: 305 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + +++++RG V+ E R+L+DA+ VV + + GGGA E EL+++L KYA
Sbjct: 365 NP-KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYA 423
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
++V G + AFA+ALE+IP TLAENAG++PI+T+ +L+ +G + G+++ +
Sbjct: 424 NSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGV 483
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ + VV PL V T A+ + E IL+IDD++ G
Sbjct: 484 GDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSGQGGQ 533
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 37/67 (55%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ + + + +NI AAKA+ADA+RT+LGP+GMDKM+ S G++ I+NDGATILK+M+V
Sbjct: 15 TQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVE 74
Query: 78 HPAAKMM 84
HP AKM+
Sbjct: 75 HPTAKMI 81
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 589 bits (1521), Expect = 0.0
Identities = 158/482 (32%), Positives = 263/482 (54%), Gaps = 41/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+++K QD E DGT + VI +G L++ AE LL+K +HPT I ++KA ++ +
Sbjct: 88 LLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQ 147
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDI 476
E++ +++ D + L K A TSL+SK V+ +A I V AV +V + D VDL +I
Sbjct: 148 ELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNI 207
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
++++K GG++ DT+LV G+V ++ + PKR+E AKI LI + K ++D ++ ++
Sbjct: 208 QIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRIN 267
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D + M + L EE I V +I G NV++ QK I ++A +L K VL V+
Sbjct: 268 DPTQMQKFLDEEENLIKEKVDKILATGANVIICQKG-----IDEVAQSYLAKKGVLAVRR 322
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
++ D+E + + R ++++D + L A L+EE G + V + G +NP +++++
Sbjct: 323 AKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISI 381
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG + ++DE R+L DAL V ++K
Sbjct: 382 LIRGGLERLVDETERALRDALGTVADVIKD------------------------------ 411
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
IAGGGA EIE++ KL KYA V G + A+A ALE + L ENAG +PI
Sbjct: 412 ---GRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPID 468
Query: 777 TVTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ +LR+ H + GI++ G ++ ++ V++P LV +AI +TE +L+IDD
Sbjct: 469 LLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDD 528
Query: 836 IV 837
+V
Sbjct: 529 VV 530
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-116
Identities = 94/291 (32%), Positives = 160/291 (54%), Gaps = 7/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++D + M + L EE I V +I G NV++ QK I ++A +L K
Sbjct: 260 LDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAK 314
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
VL V+ ++ D+E + + R ++++D + L A L+EE G + V + G +
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK 374
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP +++++++RG + ++DE R+L DAL V ++K IAGGGA EIE++ KL KYA
Sbjct: 375 NP-KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGA 322
V G + A+A ALE + L ENAG +PI + +LR+ H + GI++ G
Sbjct: 434 PQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQ 493
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ ++ V++P LV +AI +TE +L+IDD++ K+ G
Sbjct: 494 PVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPG 544
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++ + +NI A KAV +A++++ GPRGMDKM+ S G++TITNDGATIL +M++
Sbjct: 23 SSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQ 82
Query: 78 HPAAKMM 84
HPAAK++
Sbjct: 83 HPAAKLL 89
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 137/486 (28%), Positives = 233/486 (47%), Gaps = 49/486 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
LV++S+AQD E GDGTTSV I+AG L++ A+ L +GI I ++KA + VE +
Sbjct: 82 TLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKIN 141
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
E++ IT RE L + A T+++SK++ A + VDAVL + ++D K
Sbjct: 142 ELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSL----DRNDLDDK 197
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
I + + GG +E++ ++G+ F + + PK+ KI + + +
Sbjct: 198 LIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNA 257
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
+V V ++ E I ++Q+++ G N++L + I DLA F +
Sbjct: 258 EVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLP-----IGDLATQFFADRNI 312
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 651
+ +D+ V + + ++ PEHL + L EE+ G+ R+ G
Sbjct: 313 FCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA- 371
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 711
+T T+++RG + V+ E RSLHDA+ +V+ ++
Sbjct: 372 KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQN------------------------- 406
Query: 712 SGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAG 771
+ ++AGGGA E+E+S L Y+ T++G AFA+ALEVIP L ENAG
Sbjct: 407 --------KLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAG 458
Query: 772 LNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831
+ I + +LR H++GE G+ I + + V +P LV +A+ +TE IL
Sbjct: 459 FDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLIL 518
Query: 832 KIDDIV 837
+D+ +
Sbjct: 519 SVDETI 524
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-118
Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ +V V ++ E I ++Q+++ G N++L + I DLA F
Sbjct: 255 DNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFFAD 309
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ + +D+ V + + ++ PEHL + L EE+ G+ R+ G
Sbjct: 310 RNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP 369
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+T T+++RG + V+ E RSLHDA+ +V+ ++ + ++AGGGA E+E+S L Y+
Sbjct: 370 QA-KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T++G AFA+ALEVIP L ENAG + I + +LR H++GE G+ I
Sbjct: 429 KTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENI 488
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
+ + V +P LV +A+ +TE IL +D+ + ++ AG
Sbjct: 489 GDNFAKFVWEPALVKINALNSATEATNLILSVDET-ITNKGSESANAGMM 537
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-31
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
D S+ SNI A AV +A++ +LGP G D +I SN + TI+NDGATILK ++V+
Sbjct: 17 TDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVV 76
Query: 78 HPAAKMM 84
HPAAK +
Sbjct: 77 HPAAKTL 83
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 175/486 (36%), Positives = 271/486 (55%), Gaps = 45/486 (9%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VELSK+QD E GDGTT VV++AG+LLE AE+LL +GIHP I+D +++AA +E L
Sbjct: 68 LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 418 EMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
++S + + + E LI++A T+L SKVV+ +A IAV+AVL V + QR +VD +
Sbjct: 128 KISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQR-RDVDFEL 186
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IKV K+GG +EDT+L+ G++ + ++ PK+VE AKI ++ PPK HK+ V
Sbjct: 187 IKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDV 246
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ + K E+ +++QIK+ G N+ + Q D A H L + + V+
Sbjct: 247 TSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWG-----FDDEANHLLLQNDLPAVR 301
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISGIQNPGRT 653
+ +IE + R + E L A LV+EI G + + + I +N R
Sbjct: 302 WVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RA 360
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
+T+ +RG NK++++EA RSLHDALCV+R L++
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRD--------------------------- 393
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
++ GGGA EI +L +++ AD ++ Y RAFA ALEVIP+ LAEN+G+N
Sbjct: 394 ------NRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMN 447
Query: 774 PISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
PI T+TE+R R + GI+ ++ ++V++ L+ I+L+T+ VR ILK
Sbjct: 448 PIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILK 507
Query: 833 IDDIVN 838
IDDI
Sbjct: 508 IDDIRK 513
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-115
Identities = 97/279 (34%), Positives = 154/279 (55%), Gaps = 9/279 (3%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
HK+ V+ + K E+ +++QIK+ G N+ + Q D A H L +
Sbjct: 240 TKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF-----DDEANHLLLQ 294
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISG 201
+ V+ + +IE + R + E L A LV+EI G + + + I
Sbjct: 295 NDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQ 354
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
+N R +T+ +RG NK++++EA RSLHDALCV+R L++ ++ GGGA EI +L +++
Sbjct: 355 CKNS-RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ 413
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRK 320
AD ++ Y RAFA ALEVIP+ LAEN+G+NPI T+TE+R R + GI+
Sbjct: 414 EADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLH 473
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ ++V++ L+ I+L+T+ VR ILKIDDI
Sbjct: 474 KGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIR 512
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-28
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + + S+I AAKAVA+ ++TSLGP G+DKM+ +G+VT+TNDGATIL M+V
Sbjct: 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVD 62
Query: 78 HPAAKMM 84
H AK+M
Sbjct: 63 HQIAKLM 69
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 130/487 (26%), Positives = 231/487 (47%), Gaps = 51/487 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
LV+++K+QD E GDGTTSV ++A L+ + + +G+HP I AF+ A V +
Sbjct: 69 TLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIK 128
Query: 418 EMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
E++ + D R+ L K A T+L+SK++SQQ + A + VDAV+ + D + L
Sbjct: 129 EIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML-----DDLLQL 183
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMD 530
K I + + GG +E+++LV G+ F + + PK+ I L+ + +
Sbjct: 184 KMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDN 243
Query: 531 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590
++ V ++ E + + +++I +G V+L + I D+A +
Sbjct: 244 AEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLP-----IGDVATQYFADRD 298
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ + ED++ S++ + L + EE G R+ +G
Sbjct: 299 MFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA 358
Query: 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADT 710
+T T+++RG + ++E RSLHDA+ +VR +K
Sbjct: 359 -KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKN------------------------ 393
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
+++AGGGA E+ELS L Y+ T+ G A+A+ALE+IP L +NA
Sbjct: 394 ---------DSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNA 444
Query: 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830
G + + + +LR RHAQG G+++ I + E V +P +V +A+T ++E I
Sbjct: 445 GFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLI 504
Query: 831 LKIDDIV 837
+ +D+ +
Sbjct: 505 VSVDETI 511
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-117
Identities = 74/276 (26%), Positives = 137/276 (49%), Gaps = 6/276 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ V ++ E + + +++I +G V+L + I D+A +
Sbjct: 242 DNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFAD 296
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ + ED++ S++ + L + EE G R+ +G
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP 356
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+T T+++RG + ++E RSLHDA+ +VR +K +++AGGGA E+ELS L Y+
Sbjct: 357 KA-KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 415
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T+ G A+A+ALE+IP L +NAG + + + +LR RHAQG G+++ I
Sbjct: 416 RTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDI 475
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ E V +P +V +A+T ++E I+ +D+ +
Sbjct: 476 ADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 511
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-31
Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
D S+ SNI A + +A+A+RT+LGPRGMDK+I G+ TI+NDGATILK ++V+
Sbjct: 4 TDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVV 63
Query: 78 HPAAKMM 84
HPAAK +
Sbjct: 64 HPAAKTL 70
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 573 bits (1479), Expect = 0.0
Identities = 134/484 (27%), Positives = 248/484 (51%), Gaps = 43/484 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++E+S+ QD E GDGTTSV+I+AG +L AE L + +HPT + A++KA + L
Sbjct: 67 SMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLK 126
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV-VNPQRDTNVDLKD- 475
++S P+ ++R+ ++ +S+ +KV+S+ +SL IA+DAV V +D+K
Sbjct: 127 KISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKY 186
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+V + GG +ED+ ++ G++ + + + ++ +I L+ + K + + +
Sbjct: 187 ARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEI 246
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ R+L+ E YI + + I + +V++ +K ISDLA H+L + + ++
Sbjct: 247 TREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANITAIR 301
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+ + D + + R ++ + E + + A L+E G+ F I+ ++P +
Sbjct: 302 RVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KAC 360
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
T+++RG++K +L E R+L DA+ V R ++
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLD---------------------------- 392
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
L+ GGGA E+ ++ LT+ + ++G++ + +RA AQALEVIP TL +N G +
Sbjct: 393 -----PQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGAST 447
Query: 775 ISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
I +T LR +H Q T G+N G + ++ E + +PL V + ET +L+I
Sbjct: 448 IRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRI 507
Query: 834 DDIV 837
DDIV
Sbjct: 508 DDIV 511
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-114
Identities = 81/278 (29%), Positives = 149/278 (53%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ R+L+ E YI + + I + +V++ +K I SDLA H+L +
Sbjct: 240 SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMR 294
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
+ ++ + + D + + R ++ + E + + A L+E G+ F I+
Sbjct: 295 ANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + T+++RG++K +L E R+L DA+ V R ++ L+ GGGA E+ ++ LT+
Sbjct: 355 KDP-KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEK 413
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRKG 321
+ ++G++ + +RA AQALEVIP TL +N G + I +T LR +H Q T G+N G
Sbjct: 414 SKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETG 473
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ ++ E + +PL V + ET +L+IDDI+
Sbjct: 474 TLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 7e-31
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+ +++ NI AAK +AD IRT LGP+ M KM+ G + +TNDG IL+++ V H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 79 PAAKMM 84
PAAK M
Sbjct: 63 PAAKSM 68
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 572 bits (1477), Expect = 0.0
Identities = 136/485 (28%), Positives = 239/485 (49%), Gaps = 50/485 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKG-IHPTTISDAFQKAAAKCVEIL 416
+LV +SK QD E GDGTTSV +++ LL AEKL+ + IHP TI + ++ A+A ++ L
Sbjct: 76 VLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDAL 135
Query: 417 TEMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
T+ + + RE+LI A T+L+SK++SQ A +A +A+L++ + +L
Sbjct: 136 TKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL-----KGSTNL 190
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHK 532
+ I++I+ LGG + D+ L +G + K N PKR+E AKI + + K + K
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILA-KKFGNNQPKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V + + ++ K ER + N + +I K G N + ++ I D + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQ-----LIYDYPEQLFTDLGIN 304
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652
++ + E +E + +++ D L D++EEI G F+K SG +
Sbjct: 305 SIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-E 363
Query: 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 712
T+V+RG+ LDEA RSLHDAL V+ K+
Sbjct: 364 ACTIVLRGATDQTLDEAERSLHDALSVLSQTTKE-------------------------- 397
Query: 713 GIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGL 772
+ GGG E+ +S + A + G + AFA+AL +P LA+NAG
Sbjct: 398 -------TRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGF 450
Query: 773 NPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
+ V++LR+ G +T+G+++ G I ++ + +V+ + + ++ ++E +L+
Sbjct: 451 DSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLR 510
Query: 833 IDDIV 837
+D+I+
Sbjct: 511 VDNII 515
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-118
Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 6/287 (2%)
Query: 81 AKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140
K+ K V + + ++ K ER + N + +I K G N + ++ I D
Sbjct: 243 VKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQ-----LIYDYPEQL 297
Query: 141 LDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
+ + ++ + E +E + +++ D L D++EEI G F+K S
Sbjct: 298 FTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFS 357
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G + T+V+RG+ LDEA RSLHDAL V+ K+ + GGG E+ +S +
Sbjct: 358 GCKAG-EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 320
A + G + AFA+AL +P LA+NAG + V++LR+ G +T+G+++
Sbjct: 417 TEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNN 476
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367
G I ++ + +V+ + + ++ ++E +L++D+I+ + +
Sbjct: 477 GTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTAN 523
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-30
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEV-TITNDGATILKQMNV 76
+ +A + R S A AV D ++++LGP+GMDK++Q+++ +TNDGATILK + +
Sbjct: 10 VTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPL 69
Query: 77 IHPAAKMM 84
+PAAK++
Sbjct: 70 DNPAAKVL 77
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 573 bits (1480), Expect = 0.0
Identities = 158/493 (32%), Positives = 267/493 (54%), Gaps = 53/493 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+LSK+QD E GDGTT VV++A +LL+ A +L+ KGIHP I++ F +AA + L
Sbjct: 103 LLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLE 162
Query: 418 EMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
E I+ ++ R+ L+++A TSL SK+VS+ A +AV+AV+ V++ R +VD
Sbjct: 163 ETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRK-DVDF 221
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV------EKAKIGLIQFCISPPKT 527
IK+ ++GG++ D++L++G++ + ++ PK V + K+ ++ PPK
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP 281
Query: 528 DMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587
HK+ +S ++ E+ ++ +KKAG +V++ Q D A H L
Sbjct: 282 KTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG-----FDDEANHLLL 336
Query: 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKIS 645
+ + V+ + +++E + + N R + + L + + E G + R + I
Sbjct: 337 QNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIE 396
Query: 646 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 705
+ +T+T VRGSNK+++DEA R+LHD+LCVVR LVK
Sbjct: 397 QSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKD------------------- 436
Query: 706 KYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLT 765
++ GGGA E+ +SL +++ AD GID Y FR FAQAL+ IP+T
Sbjct: 437 --------------SRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMT 482
Query: 766 LAENAGLNPISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLST 824
LAEN+GL+PI T++ L+++ + + + G++ ++ E VV P + I L+T
Sbjct: 483 LAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLAT 542
Query: 825 ETVRSILKIDDIV 837
+ R ILKID+++
Sbjct: 543 QLCRMILKIDNVI 555
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-115
Identities = 93/279 (33%), Positives = 156/279 (55%), Gaps = 9/279 (3%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
HK+ +S ++ E+ ++ +KKAG +V++ Q D A H L +
Sbjct: 283 TKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF-----DDEANHLLLQ 337
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISG 201
+ V+ + +++E + + N R + + L + + E G + R + I
Sbjct: 338 NDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
+ +T+T VRGSNK+++DEA R+LHD+LCVVR LVK ++ GGGA E+ +SL +++
Sbjct: 398 SKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSE 456
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRK 320
AD GID Y FR FAQAL+ IP+TLAEN+GL+PI T++ L+++ + + + G++
Sbjct: 457 EADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLG 516
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV P + I L+T+ R ILKID+++
Sbjct: 517 YGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-32
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 13 KSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
K K + + + S+I AA++VA I+TSLGPRG+DK++ + +GE+TITNDGATIL
Sbjct: 33 KDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILS 92
Query: 73 QMNVIHPAAKMM 84
QM + + AK++
Sbjct: 93 QMELDNEIAKLL 104
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 571 bits (1475), Expect = 0.0
Identities = 133/484 (27%), Positives = 236/484 (48%), Gaps = 49/484 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV++S+ QD E GDGTTSV ++A LL AE L+ K IHP TI +++A + L
Sbjct: 70 VLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALL 129
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + R++L+ A T+L+SK+++ +AV+AVL++ + +L+
Sbjct: 130 NSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----KGSGNLE 184
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHKV 533
I VI+KLGG++ D+ L +G + K VN PKR+E AKI + + K + +V
Sbjct: 185 AIHVIKKLGGSLADSYLDEGFLLD-KKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRV 243
Query: 534 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593
V + + + E+ + V++I K G N + ++ I + V+
Sbjct: 244 RVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQ-----LIYNYPEQLFGAAGVMA 298
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ + +E + ++ DH L S L+EE+ G + + SG+
Sbjct: 299 IEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EA 357
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+V+RG+ + +LDEA RSLHDALCV+ VK
Sbjct: 358 CTIVLRGATQQILDEAERSLHDALCVLAQTVKD--------------------------- 390
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
+ GGG E+ ++ +T+ A G +A ++A+AL ++P +A+NAG +
Sbjct: 391 ------SRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYD 444
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
V +LR H++G+TT G+++++G I ++ + + V + + E IL++
Sbjct: 445 SADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRV 504
Query: 834 DDIV 837
D+I+
Sbjct: 505 DNII 508
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-117
Identities = 73/279 (26%), Positives = 139/279 (49%), Gaps = 6/279 (2%)
Query: 81 AKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140
K+ +V V + + + E+ + V++I K G N + ++ I +
Sbjct: 236 IKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQ-----LIYNYPEQL 290
Query: 141 LDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
V+ ++ + +E + ++ DH L S L+EE+ G + + S
Sbjct: 291 FGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFS 350
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G+ T+V+RG+ + +LDEA RSLHDALCV+ VK + GGG E+ ++ +T
Sbjct: 351 GVALG-EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 320
+ A G +A ++A+AL ++P +A+NAG + V +LR H++G+TT G+++++
Sbjct: 410 QLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKE 469
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G I ++ + + V + + E IL++D+I+
Sbjct: 470 GTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNII 508
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQAS--NGEVTITNDGATILKQ 73
A D+ +A R S+ A A+ D ++++LGP+GMDK++ +S + + +TNDGATILK
Sbjct: 1 AGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKN 60
Query: 74 MNVIHPAAKMM 84
+ V +PAAK++
Sbjct: 61 IGVDNPAAKVL 71
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 567 bits (1465), Expect = 0.0
Identities = 129/497 (25%), Positives = 236/497 (47%), Gaps = 56/497 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L EL+ QD E GDGTTSVVI+A LL+ A++L+ + IHPT++ ++ A + V ++
Sbjct: 68 VLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIS 127
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV--VNPQRDTNVDLK 474
E + R+ LI +A TS++SKV+ A + VDAVL + + + +
Sbjct: 128 ENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
I V++ G + ++ L++G + PKR+ AKI + F + K + +VV
Sbjct: 188 SINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVV 247
Query: 535 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594
++D +D++ + E +++I G NV+L I D+ + + + + V
Sbjct: 248 ITDPEKLDQIRQRESDITKERIQKILATGANVILTTGG-----IDDMCLKYFVEAGAMAV 302
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEH------LSSADLVEEIPAGNSRFVKISGIQ 648
+ + + D++ + K +++L + E L A+ V + + + I +
Sbjct: 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 362
Query: 649 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ +V++RG+N + DE RSLHDALCVV+ +++
Sbjct: 363 AR-TSASVILRGANDFMCDEMERSLHDALCVVKRVLES---------------------- 399
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 768
++++ GGGA E LS+ L YA ++ + FA++L VIP TLA
Sbjct: 400 -----------KSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 448
Query: 769 NAGLNPISTVTELRNRHAQGET--------TTGINVRKGAITNILEENVVQPLLVSTSAI 820
NA + V +LR H + + G+++ G + + V +P +V ++
Sbjct: 449 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSL 508
Query: 821 TLSTETVRSILKIDDIV 837
+TE +IL+IDD++
Sbjct: 509 KFATEAAITILRIDDLI 525
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-111
Identities = 74/290 (25%), Positives = 144/290 (49%), Gaps = 20/290 (6%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ +VV++D +D++ + E +++I G NV+L I D+ + + +
Sbjct: 242 LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVE 296
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH------LSSADLVEEIPAGNSRFV 197
+ V+ + + D++ + K +++L + E L A+ V + + +
Sbjct: 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELI 356
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
I + + +V++RG+N + DE RSLHDALCVV+ +++ ++++ GGGA E LS+
Sbjct: 357 LIKNTKAR-TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSI 415
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET----- 312
L YA ++ + FA++L VIP TLA NA + V +LR H + +
Sbjct: 416 YLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERK 475
Query: 313 ---TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G + + V +P +V ++ +TE +IL+IDD++
Sbjct: 476 NLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-33
Identities = 36/68 (52%), Positives = 51/68 (75%)
Query: 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
F D+S IR+ N+ AA ++A+ +++SLGP G+DKM+ G+VTITNDGATILK + V
Sbjct: 2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV 61
Query: 77 IHPAAKMM 84
HPAAK++
Sbjct: 62 EHPAAKVL 69
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 565 bits (1460), Expect = 0.0
Identities = 121/484 (25%), Positives = 226/484 (46%), Gaps = 47/484 (9%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++V S Q+ E GDGT V++ AG+LLE AE+LL G+ + + + ++ A K EIL
Sbjct: 69 MIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILP 128
Query: 418 EMS--TPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
++ + L D + + TS+ SK LA + A + + + ++ +
Sbjct: 129 DLVCCSAKNLRDVDEVSSLLHTSVMSKQYGN-EVFLAKLIAQACVSIFPD--SGHFNVDN 185
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
I+V + LG V + ++ G+VF +++ V+ AKI + T+ V++
Sbjct: 186 IRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLI 243
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ K E + VK I G NV++ + +D+A+H+ +K +++V+
Sbjct: 244 KSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIMLVR 298
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+ D+ +CKT+ + L+ + E + D V G+++ V + G T
Sbjct: 299 LNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIST 358
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+V+RGS ++D+ R++ D + + L +
Sbjct: 359 IVLRGSTDNLMDDIERAVDDGVNTFKVLTRD----------------------------- 389
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
+ L+ GGGA EIEL+ ++T Y +T G++ Y + FA+A E IP LAEN+G+
Sbjct: 390 ----KRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKAN 445
Query: 776 STVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
+++L H +G G+++ A+ ++LE V+ L AI L+T ++L++
Sbjct: 446 EVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRV 505
Query: 834 DDIV 837
D I+
Sbjct: 506 DQII 509
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-117
Identities = 75/277 (27%), Positives = 141/277 (50%), Gaps = 7/277 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V++ + K E + VK I G NV++ + +D+A+H+ +K
Sbjct: 237 TKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANK 291
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+++V+ + D+ +CKT+ + L+ + E + D V G+++ V +
Sbjct: 292 YNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK 351
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
G T+V+RGS ++D+ R++ D + + L + + L+ GGGA EIEL+ ++T Y
Sbjct: 352 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYG 411
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG-- 321
+T G++ Y + FA+A E IP LAEN+G+ +++L H +G G+++
Sbjct: 412 ETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVP 471
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
A+ ++LE V+ L AI L+T ++L++D I
Sbjct: 472 AVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQI 508
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-30
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K S + NI A K +A RT+ GP GM+KM+ ++ +TND ATIL+++ V
Sbjct: 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 63
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 64 HPAAKMI 70
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 564 bits (1455), Expect = 0.0
Identities = 135/503 (26%), Positives = 235/503 (46%), Gaps = 62/503 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ IHPTTI F+ A + + +
Sbjct: 82 ILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFIN 141
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV--VNPQRDTNVDLK 474
E +ST + +E LI A TS++SK++ + + + VDA+L V N + + +K
Sbjct: 142 EVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVK 201
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE--KAKIGLIQFCISPPKTDMDHK 532
+ V++ G + ++ LV G A+ PKR+ KI + + + M +
Sbjct: 202 AVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQ 261
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
+ + D ++++ K E +L VK+I AG V+L K I DL + + K++
Sbjct: 262 INIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVEAKIM 316
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPE------HLSSADLVEEIPAGNSRFVKISG 646
V+ ++ED+ + + ++S+ + E +L D V + + + I G
Sbjct: 317 GVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKG 376
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
+ ++++RG+N LDE RSLHD+L VV+ ++
Sbjct: 377 TSKH-SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLES-------------------- 415
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
++ GGG E L++ L +A TV + FA AL +IP TL
Sbjct: 416 -------------GNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTL 462
Query: 767 AENAGLNPISTVTELRNRHAQGET------------TTGINVRKGAITNILEENVVQPLL 814
A NA + V +LR+ HA + G+++ +G I + + V++P +
Sbjct: 463 AVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTI 522
Query: 815 VSTSAITLSTETVRSILKIDDIV 837
++ + E +IL+ID ++
Sbjct: 523 SKVKSLKSALEACVAILRIDTMI 545
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 351 bits (904), Expect = e-112
Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 25/308 (8%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
M ++ + D ++++ K E +L VK+I AG V+L K I DL + +
Sbjct: 258 MGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVE 312
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPE------HLSSADLVEEIPAGNSRFV 197
K++ V+ ++ED+ + + ++S+ + E +L D V + + +
Sbjct: 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECI 372
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
I G + ++++RG+N LDE RSLHD+L VV+ ++ ++ GGG E L++
Sbjct: 373 LIKGTSKH-SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNI 431
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET----- 312
L +A TV + FA AL +IP TLA NA + V +LR+ HA +
Sbjct: 432 YLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPED 491
Query: 313 -------TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365
G+++ +G I + + V++P + ++ + E +IL+ID + + +
Sbjct: 492 VKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTM-ITVDPE 550
Query: 366 QDIEAGDG 373
E
Sbjct: 551 PPKEDPHD 558
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-31
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+K DIRN N+ A AVA+ +++SLGP G+DKM+ G+ T+TNDGATIL ++V H
Sbjct: 18 EKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQH 77
Query: 79 PAAKMM 84
PA K++
Sbjct: 78 PAGKIL 83
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 557 bits (1438), Expect = 0.0
Identities = 122/499 (24%), Positives = 222/499 (44%), Gaps = 56/499 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV ++ Q I+ GDGT V+I+AG LL +EKL+ G+ I + A ++ L
Sbjct: 84 VLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELD 143
Query: 418 EMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR----DTNV 471
EM D+ L+K ++SK + +L+ + +AV V+ +
Sbjct: 144 EMVVGEITDKNDKNELLKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYF 202
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSA-NVNGPKRVEKAKIGLIQFCISPPKTDMD 530
++ I+V++ +GG++ ++ ++ G+VF ++ +V +K K+ + + T+
Sbjct: 203 NVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETK 262
Query: 531 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590
V++ + M K E I ++K+I G ++ + +LA+H+L++
Sbjct: 263 GTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG-----VGELALHYLNRYG 317
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+LV+K + ++ +C+ P+ L PE L + V+ + G R Q
Sbjct: 318 ILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGE 377
Query: 651 -GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
RT T+++RG+ + LD+ R++ D + V+ L+K
Sbjct: 378 ISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSG--------------------- 416
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
L+ G GA EIEL ++TKY + G+ + FA A EV+P TLAE
Sbjct: 417 ----------GKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAET 466
Query: 770 AGLNPISTVTELRNRHAQGETT--------TGINV---RKGAITNILEENVVQPLLVSTS 818
AGL+ + L H E G+++ + +I EEN+ L
Sbjct: 467 AGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKF 526
Query: 819 AITLSTETVRSILKIDDIV 837
AI ++TE ++L ID I+
Sbjct: 527 AINVATEAATTVLSIDQII 545
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 349 bits (899), Expect = e-111
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 19/289 (6%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V++ + M K E I ++K+I G ++ + +LA+H+L++
Sbjct: 261 TKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGV-----GELALHYLNR 315
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+LV+K + ++ +C+ P+ L PE L + V+ + G R Q
Sbjct: 316 YGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQ 375
Query: 204 NP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA--LIAGGGAPEIELSLKLT 260
RT T+++RG+ + LD+ R++ D + V+ L+K L+ G GA EIEL ++T
Sbjct: 376 GEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT 435
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT------- 313
KY + G+ + FA A EV+P TLAE AGL+ + L H E
Sbjct: 436 KYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHL 495
Query: 314 -TGINV---RKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
G+++ + +I EEN+ L AI ++TE ++L ID I
Sbjct: 496 YKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQI 544
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
S A +I A + + TS+GP G +K+I G++ ITND AT+L++++++
Sbjct: 19 NSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIV 78
Query: 78 HPAAKMM 84
HPA K++
Sbjct: 79 HPAVKVL 85
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 549 bits (1417), Expect = 0.0
Identities = 121/484 (25%), Positives = 221/484 (45%), Gaps = 41/484 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ +++ AQD GDGTTS V++ G LL+ A+ + +G+HP I++ F+ A K ++ L
Sbjct: 68 LIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLE 127
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + DRE LI A TSL +KV ++ A +L VD++L + D +DL ++
Sbjct: 128 QVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ--DEPIDLFMVE 184
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
++ + DT L+ GLV + + + KRVE A I + KT+++
Sbjct: 185 IMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKS 244
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS----ILRDAISDLAIHFLDKIKVLV 593
++++K ER +I + VK+I + V I + I ++ L K ++
Sbjct: 245 AEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIA 304
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ +R ++E + + SLD P+ L V E G +F I NP R+
Sbjct: 305 LRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNP-RS 363
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
+T++++G NK L + ++ D L V+ +
Sbjct: 364 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDD--------------------------- 396
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
++ G GA E+ ++ L KY +V G +AFA AL +IP LA+N+G +
Sbjct: 397 ------GCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFD 450
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
T+ +++ H++ G+++ G E + V + T +IL +
Sbjct: 451 LQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLV 510
Query: 834 DDIV 837
D+I+
Sbjct: 511 DEIM 514
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 339 bits (873), Expect = e-108
Identities = 66/280 (23%), Positives = 127/280 (45%), Gaps = 5/280 (1%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS----ILRDAISDLAIH 139
++ ++++K ER +I + VK+I + V I + I ++
Sbjct: 236 VNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLD 295
Query: 140 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKI 199
L K ++ ++ +R ++E + + SLD P+ L V E G +F I
Sbjct: 296 ALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFI 355
Query: 200 SGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 259
NP R++T++++G NK L + ++ D L V+ + ++ G GA E+ ++ L
Sbjct: 356 EKCNNP-RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL 414
Query: 260 TKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVR 319
KY +V G +AFA AL +IP LA+N+G + T+ +++ H++ G+++
Sbjct: 415 VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLN 474
Query: 320 KGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G E + V + T +IL +D+I+
Sbjct: 475 TGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-30
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 56/237 (23%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ ++A NI AA+ + D +RT+LGP+G KM+ + G++ +T DG +L +M +
Sbjct: 3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ 62
Query: 78 HPAAKMM-------DHKV------VVSDYSAMDRVLKEERAYILN------IVKQIKKAG 118
HP A ++ D V + LK+ YI I + + A
Sbjct: 63 HPTASLIAKVATAQDDITGDGTTSNVLIIGEL---LKQADLYISEGLHPRIITEGFEAA- 118
Query: 119 CNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLP 177
+ A+ FL+++KV +++RE + V +T L T+ A L L
Sbjct: 119 ---------------KEKALQFLEQVKVSK--EMDRETLIDVARTSLRTKVHAELADVLT 161
Query: 178 EH-----LSSADLVEEIPAGNSRFVKISGIQNPGRTL--TVVVRGSNKLVLDEAARS 227
E L+ E I +++ ++ T ++RG LVLD AR
Sbjct: 162 EAVVDSILAIKKQDEPIDLFMVEIMEM-----KHKSETDTSLIRG---LVLDHGARH 210
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 543 bits (1402), Expect = 0.0
Identities = 118/492 (23%), Positives = 219/492 (44%), Gaps = 44/492 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ + AQD GDGTT+VV + G LL A + + +G+HP I+D F+ A + ++ L
Sbjct: 75 LIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLD 134
Query: 418 EM--STPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
E S DRE L++ A +SL +KV + +L PI DAVL V + Q D N+DL
Sbjct: 135 EFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQAD-NLDLHM 193
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+++++ + +DT + GLV + + P RV+ A + ++ + KT+++
Sbjct: 194 VEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFY 253
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS-----ILRDAISDLAIHFLDKIK 590
S D++ ER ++ +K+I V + I + I +++ K
Sbjct: 254 SSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN 313
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+L ++ +R ++E + S++ P+ L + LV + G +F ++ +P
Sbjct: 314 ILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP 373
Query: 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADT 710
++ T++++GS L + ++ D L V ++K + +I G GA I LS L
Sbjct: 374 -KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMN 432
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
G AFA+AL VIP TL +N+
Sbjct: 433 ------------------------------KLGAKGKTKTGIEAFAEALLVIPKTLVKNS 462
Query: 771 GLNPISTVTELRNRH-----AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTE 825
G +P+ + + + + G+++ G + E + V +AIT +T
Sbjct: 463 GFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATG 522
Query: 826 TVRSILKIDDIV 837
++L D+++
Sbjct: 523 IASNLLLCDELL 534
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = e-102
Identities = 62/289 (21%), Positives = 124/289 (42%), Gaps = 14/289 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS-----ILRDAISDLAI 138
++ S D++ ER ++ +K+I V + I + I +++
Sbjct: 247 VNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSL 306
Query: 139 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 198
K +L ++ +R ++E + S++ P+ L + LV + G +F
Sbjct: 307 DVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTY 366
Query: 199 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 258
++ +P ++ T++++GS L + ++ D L V ++K + +I G GA I LS
Sbjct: 367 VTENTDP-KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRY 425
Query: 259 LTKYADT---VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-----AQG 310
L G AFA+AL VIP TL +N+G +P+ + + + +
Sbjct: 426 LRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDE 485
Query: 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G + E + V +AIT +T ++L D++L
Sbjct: 486 TRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-29
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ + N+ +A+ + + T+LGP+G KM+ G + +T DG +L +M +
Sbjct: 10 AESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQ 69
Query: 78 HPAAKMM 84
P A ++
Sbjct: 70 SPTAVLI 76
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-166
Identities = 122/512 (23%), Positives = 243/512 (47%), Gaps = 37/512 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLL-EAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
++ELS+ QD E GDGTT+V+I+AG +L + A L+ K IHP I A +KA +E++
Sbjct: 77 SMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVI 136
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV-------VNPQRDT 469
++S P+ + + + K S+ +K V + + +A+DAV V V + +
Sbjct: 137 KQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNF 196
Query: 470 NVDLKD-IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTD 528
+D+K ++V + GG V D+ ++ G++ + + + +E ++ L+ + K +
Sbjct: 197 EIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGE 256
Query: 529 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588
+ + +R+L+ E + + +QI +++ +K +SDLA H+L K
Sbjct: 257 SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLK 311
Query: 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 647
V++ +++ D + + + ++ + ++ L + G+ F +
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371
Query: 648 QNP-------------------GRTLTVVVRGSNKLVLDEAARSL---HDALCVVRCLVK 685
+ P + + V +N+ ++ +L H K
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431
Query: 686 QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVS 745
++ GG+ +I + + +L GGGA E+ +S+KL + A +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLE 491
Query: 746 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 805
GI + ++A A A+E IP TL +NAG +PI +++LR +HAQG TTGI+ KG I +++
Sbjct: 492 GIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMV 551
Query: 806 EENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +P ++ ++ + E+ +L++DDIV
Sbjct: 552 SYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 583
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 4e-84
Identities = 74/339 (21%), Positives = 143/339 (42%), Gaps = 61/339 (17%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ + +R+L+ E + + +QI +++ +K +SDLA H+L K
Sbjct: 257 SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLK 311
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
V++ +++ D + + + ++ + ++ L + G+ F +
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371
Query: 203 QNP--------------------------------------------GRTLTVVVRGSNK 218
+ P G GS K
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431
Query: 219 LVLDE-----------AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 267
R+L DA+ V R ++ +L GGGA E+ +S+KL + A +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLE 491
Query: 268 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327
GI + ++A A A+E IP TL +NAG +PI +++LR +HAQG TTGI+ KG I +++
Sbjct: 492 GIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMV 551
Query: 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366
+ +P ++ ++ + E+ +L++DDI+ + K +
Sbjct: 552 SYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 590
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++++ + SNI AAKAVAD IRT LGP+ M KM+ G + +TNDG IL++++V
Sbjct: 12 QERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVA 71
Query: 78 HPAAKMM 84
HPAAK M
Sbjct: 72 HPAAKSM 78
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-37
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551
+ G+V ++ + P V+ AKI LI + KT+++ KV +SD S + L +E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611
+V++IKK+G NV+L QK I D+A H+L K + V+ +++ D+E + K
Sbjct: 61 FKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 115
Query: 612 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ + LD P L A+ VEE G+ R + G +N
Sbjct: 116 KIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-26
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 38 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 92
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
Query: 204 NP 205
N
Sbjct: 153 NH 154
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-34
Identities = 34/184 (18%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVL 545
+ED+ ++ G++ + + + ++ +I L+ + K + + ++ R+L
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 546 KEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 605
+ E YI + + I + +V++ +K ISDLA H+L + V ++ + + D +
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANVTAIRRVRKTDNNRI 115
Query: 606 CKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 664
+ R ++ + + + + A L+E G+ F I+ ++P + T+++RG++
Sbjct: 116 ARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRGASHH 174
Query: 665 VLDE 668
Sbjct: 175 HHHH 178
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-22
Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ R+L+ E YI + + I + +V++ +K ISDLA H+L +
Sbjct: 44 SQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMR 98
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
V ++ + + D + + R ++ + + + + A L+E G+ F I+
Sbjct: 99 ANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 158
Query: 203 QNPGRTLTVVVRGSNKLVLDE 223
++P + T+++RG++
Sbjct: 159 KDP-KACTILLRGASHHHHHH 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.8 bits (232), Expect = 1e-19
Identities = 110/670 (16%), Positives = 215/670 (32%), Gaps = 169/670 (25%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAY--------ILNIVKQI-KKAGCNVLLVQKSILRDAIS 134
MD + Y D + E A+ + ++ K I K + +++ K +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTL 65
Query: 135 DLAIHFLDKIKVLV---VKDIEREDIEFVCKTLNTR---PIASLDHFLPEHLSSADLVEE 188
L L K + +V V+++ R + +F+ + T P ++ + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DR 118
Query: 189 IPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG- 247
+ N F K + V R L L +A L A V+ I G
Sbjct: 119 LYNDNQVFAKYN-----------VSRLQPYLKLRQALLELRPAKNVL---------IDGV 158
Query: 248 GGAPEIELSLK--LTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305
G+ K + D C F ++ L L +P + + L+
Sbjct: 159 LGSG------KTWVA--LDVCLSYKVQCKMDF----KIFWLNLKNCN--SPETVLEMLQK 204
Query: 306 RHAQGETTTGINVRKGAITNI-LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364
Q R +NI L + +Q L + S +L + ++
Sbjct: 205 LLYQ--IDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNV----QN 255
Query: 365 AQDIEAGDG------TTSVVIVAGSLLEAAEK---LLH--KGIHPTTISDAFQKAAAKCV 413
A+ A + TT V L A L H + P + K +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYL 311
Query: 414 EILT-----EMST--PITLAD-RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP 465
+ E+ T P L+ E++ AT N K V+ L I +++ L V+ P
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTI-IESSLNVLEP 368
Query: 466 --QRDTNVDL----KDIKVIRKL------GGTVEDTE-LVDGLVFTQKSANVNGPKRVEK 512
R L + L D +V+ L + S V K+ ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSL-VE--KQPKE 423
Query: 513 AKIGL--IQFCISPPKTDMD--HKVVVSDYSAM------DRVLKEERAYILN-IVKQIKK 561
+ I + I + + H+ +V Y+ D + Y + I +K
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 562 AGCNVLLVQK-SILRDAISDLAIHFLD-KIK-----------VL-VVKDIEREDIEFVCK 607
++ ++ R D FL+ KI+ +L ++ ++ ++C
Sbjct: 484 IE----HPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICD 536
Query: 608 --TLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKI--SGIQNPGRTLTVVVRGSNK 663
R + ++ FLP+ +L+ S++ + + ++
Sbjct: 537 NDPKYERLVNAILDFLPKI--EENLI------CSKYTDLLRIALMAE-----------DE 577
Query: 664 LVLDEAARSL 673
+ +EA + +
Sbjct: 578 AIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-08
Identities = 70/487 (14%), Positives = 149/487 (30%), Gaps = 143/487 (29%)
Query: 401 ISDAFQKAAAK---CVEILTEMSTPITLADRENLIKSAATSLNSKVV-----SQQASLLA 452
I F+ A C ++ + ++ + +++I S + + S+Q ++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 453 PIAVDAVLK-----VVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGP 507
V+ VL+ +++P + + ++ ++ D D VF + NV+
Sbjct: 81 -KFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRL 134
Query: 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVL 567
+ K + L++ + P K V++ + G
Sbjct: 135 QPYLKLRQALLE--LRPAK-----NVLID---GV--------------------LGSG-- 162
Query: 568 LVQKSIL-RDAISDLAIH--FLDKIKVLVVKDIERED--IEFVCKTLNTRPIASLDHFLP 622
K+ + D + KI L +K+ + +E + + L + I
Sbjct: 163 ---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQ-IDPNWTSRS 217
Query: 623 EHLSSADL-VEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV-- 679
+H S+ L + I A R +K L LVL + +A
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSK--PYE-NCL---------LVLLN----VQNAKAWNA 261
Query: 680 --VRCLVKQRALIAGGGAPEIELSLKLTKY---ADTVSGIDAYCFRALIAGGGAPEIE-L 733
+ C + L+ T++ D +S E
Sbjct: 262 FNLSC----KILL-------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 734 SLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE-LRN--------R 784
SL L KY + L P +S + E +R+ +
Sbjct: 305 SL-LLKYL----DCRPQDLPR--EVLTTNPRR---------LSIIAESIRDGLATWDNWK 348
Query: 785 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI----TLSTETVRSIL-------KI 833
H + T + + ++ N+LE + + ++ + S++ +
Sbjct: 349 HVNCDKLT--TIIESSL-NVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 834 DDIVNTL 840
+VN L
Sbjct: 405 MVVVNKL 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 124/393 (31%)
Query: 8 DSKNSKSSAFKDKSKAT------DIRNSNIGAA-------------KAVADAIRTSLGPR 48
+ K K +++N+ A K V D + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-- 286
Query: 49 GMDKMIQASNGEVTITND-GATIL------------KQMNVIHP------AAKMMDH--- 86
I + +T+T D ++L +++ +P A + D
Sbjct: 287 ---THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 87 ----KVVVSDYSAMDRVLK---------EERAY-----IL----NI-------------- 110
K V + + +++ E R + +I
Sbjct: 344 WDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 111 --VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV----CKTL 164
V + LV+K IS +I+ K+K+ + R ++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 165 NTRPIASLD----HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLV 220
+ LD + HL + + E + F+ ++ K+
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-------------QKIR 508
Query: 221 LDEAAR----SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRA 276
D A S+ + L ++ + I + + + D + I+
Sbjct: 509 HDSTAWNASGSILNTLQQLK---FYKPYICDN---DPKYERLVNAILDFLPKIEENLIC- 561
Query: 277 FAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 309
++ +++ + L + + E ++ Q
Sbjct: 562 -SKYTDLLRIAL-----MAEDEAIFEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 100.0 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.96 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.92 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.86 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 99.37 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 99.28 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 99.28 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 98.99 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 98.82 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 98.81 |
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-100 Score=878.15 Aligned_cols=448 Identities=71% Similarity=1.087 Sum_probs=430.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++..+++.|.+
T Consensus 65 P~akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~ 144 (518)
T 3iyg_D 65 PAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLN 144 (518)
T ss_pred HHHHHHHHHHHHhhhhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHH
Confidence 55778999999999999999999999999999999999999999999999999999999999999999998778899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++..++.+|+++|+|+++.||+..||++++|++|+++|.+ +||++++||
T Consensus 145 vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~~i~n~ 223 (518)
T 3iyg_D 145 SAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKA 223 (518)
T ss_pred HhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-CCCccccCc
Confidence 9999999999999999999999999999985434567999999999999999999999999999999955 899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe-----cCCcccccccHHHHHHHHh
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLV-----QKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~-----~~~I~~~~l~~~~~~~l~~ 588 (841)
||++++|+|++++++++.++.++++++++.+.++|++++.++++++++.|+||||+ +++| ++.+++||.+
T Consensus 224 kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I-----~~~Al~~L~~ 298 (518)
T 3iyg_D 224 KIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL-----SDLALHFLNK 298 (518)
T ss_pred eEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCc-----CHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 6777 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC-eeEEEEEccCCCCceEEEEEeCCCHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN-SRFVKISGIQNPGRTLTVVVRGSNKLVLD 667 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIllrG~t~~~l~ 667 (841)
+||++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+ ++|++|++|+++++.|||+|||+|+.+++
T Consensus 299 ~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~ 378 (518)
T 3iyg_D 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIE 378 (518)
T ss_pred cCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999998459999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCCh
Q psy8873 668 EAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747 (841)
Q Consensus 668 e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (841)
|.||+++||++++|+++++|++|||||++|++++.+|+ +++.+.+++
T Consensus 379 E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~ 425 (518)
T 3iyg_D 379 EAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLT---------------------------------EYSRTLSGM 425 (518)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHH---------------------------------HHhhcCChH
Confidence 99999999999999999999999999999999999999 777788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHH
Q psy8873 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETV 827 (841)
Q Consensus 748 ~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a 827 (841)
+|+++++|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 426 ~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a 505 (518)
T 3iyg_D 426 ESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETV 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred HHHHchhhhhcCC
Q psy8873 828 RSILKIDDIVNTL 840 (841)
Q Consensus 828 ~~iL~iD~iI~~~ 840 (841)
++|||||+||+++
T Consensus 506 ~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 506 RSILKIDDVVNTR 518 (518)
T ss_pred HHHHhhcceEecC
Confidence 9999999999874
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-101 Score=886.01 Aligned_cols=453 Identities=59% Similarity=0.949 Sum_probs=434.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 73 P~akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~ 152 (528)
T 3p9d_D 73 PVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVR 152 (528)
T ss_dssp TTHHHHHHHHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++ .++.+|+++|+|++++||+++||++++|++|+++| ++..||+.++|
T Consensus 153 va~tsl~sK~~~~~~~~i~~livdAv~~V~~~-~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien 231 (528)
T 3p9d_D 153 AASTSLSSKIVSQYSSFLAPLAVDSVLKISDE-NSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEK 231 (528)
T ss_dssp HHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCT-TTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESS
T ss_pred HHHHHhcCCccchhHHHHHHHHHHHHHHhccc-cCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccC
Confidence 99999999999999999999999999999863 24679999999999999999999999999999999 55339999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++.++++++++.|+||||++++|.+|++++++++||.++||+
T Consensus 232 ~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~ 311 (528)
T 3p9d_D 232 AKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIM 311 (528)
T ss_dssp EEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCC
T ss_pred ceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccC--CCCceEEEEEeCCCHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ--NPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--~~~~~~TIllrG~t~~~l~e~~ 670 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+ +.+++|||+|||+|+.+++|.|
T Consensus 312 av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~k 391 (528)
T 3p9d_D 312 VVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETE 391 (528)
T ss_dssp EEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 5238999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+
T Consensus 392 r~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~ 438 (528)
T 3p9d_D 392 RSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLS---------------------------------KEARSMEGVQAF 438 (528)
T ss_dssp HHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHH---------------------------------HCCTTSCHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHH---------------------------------HHhhccChHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|
T Consensus 439 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~i 518 (528)
T 3p9d_D 439 IWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSI 518 (528)
T ss_dssp THHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887788999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||+||+++
T Consensus 519 L~iD~ii~~~ 528 (528)
T 3p9d_D 519 LRIDDIAFSR 528 (528)
T ss_dssp HHCSCCCBCC
T ss_pred HhhhHheecC
Confidence 9999999874
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-99 Score=867.17 Aligned_cols=446 Identities=30% Similarity=0.511 Sum_probs=424.4
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHh
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSA 435 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia 435 (841)
.+++++.+++||.++||||||+++||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.++|
T Consensus 65 Akll~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va 144 (515)
T 3iyg_G 65 AKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNII 144 (515)
T ss_pred HHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999998876789999999
Q ss_pred hhhccCcchhhhhhHHHHHHHHHHhhhcCC-CCCCccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 436 ATSLNSKVVSQQASLLAPIAVDAVLKVVNP-QRDTNVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 436 ~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~-~~~~~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|++++|..+.|.+++++++++|+..+.++ .....+|++ +|+|++++||+++||++++|++|++++.+.+||+.++||
T Consensus 145 ~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~ 224 (515)
T 3iyg_G 145 NSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNP 224 (515)
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeee
Confidence 999999999999999999999999998632 122346765 599999999999999999999999999434899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++|+|+++++++++++.++++++++++.+.|++++++++++|++.|++|||++++| ++++++||.++||++
T Consensus 225 kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I-----~~~al~~L~~~~I~a 299 (515)
T 3iyg_G 225 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMRANITA 299 (515)
T ss_pred EEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCcc-----CHHHHHHHHHCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
++++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+++ +.|||+|||+|+.+++|.||+
T Consensus 300 v~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~ 378 (515)
T 3iyg_G 300 IRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KACTILLRGASKEILSEVERN 378 (515)
T ss_pred eccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCC-CeEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|++++++++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 379 i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~eq~~i 425 (515)
T 3iyg_G 379 LQDAMQVCRNVLLDPQLVPGGGASEMAVAHALT---------------------------------EKSKAMTGVEQWPY 425 (515)
T ss_pred HHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH---------------------------------HHhhccCcHHHHHH
Confidence 999999999999999999999999999999999 77788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++||+||+.||++||+|||+|+.+++.+|++.|..+ +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++||
T Consensus 426 ~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL 505 (515)
T 3iyg_G 426 RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 505 (515)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764 4579999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||+||...
T Consensus 506 ~iD~ii~~~ 514 (515)
T 3iyg_G 506 RIDDIVSGH 514 (515)
T ss_pred HHHheeecC
Confidence 999999753
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-99 Score=870.31 Aligned_cols=443 Identities=29% Similarity=0.496 Sum_probs=420.4
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHHhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKSAA 436 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~ia~ 436 (841)
++++.+++||.++||||||++|||++||+++.+++++|+||+.|++||++|.+.++++|++ +++|++..+++.|.++|+
T Consensus 68 ll~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~ 147 (529)
T 3iyg_A 68 VLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAK 147 (529)
T ss_pred HHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 3445666788999999999999999999999999999999999999999999999999999 999988667899999999
Q ss_pred hhccCcchhhhhhHHHHHHHHHHhhhcCC--CCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 437 TSLNSKVVSQQASLLAPIAVDAVLKVVNP--QRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 437 t~l~sk~~~~~~~~ls~lv~~A~~~v~~~--~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
|+++||+.+.|.++|++|+++|+.++++. .+...||+++|+|++.+||++.||++++|++|++++.+.+||+.++|||
T Consensus 148 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~k 227 (529)
T 3iyg_A 148 TSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAK 227 (529)
T ss_pred HHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCce
Confidence 99999999999999999999999999742 2234688889999999999999999999999999994449999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++|+|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++++++||.++||+++
T Consensus 228 Illl~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I-----~d~al~~L~~~gI~av 302 (529)
T 3iyg_A 228 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVEAGAMAV 302 (529)
T ss_pred EEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHHcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCC------CCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFL------PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+++++++|+|||++|||++++++++++ ++++|+|+.|++.++|+++|++|++|+++ +.|||+|||+|+.+++|
T Consensus 303 ~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E 381 (529)
T 3iyg_A 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR-TSASVILRGANDFMCDE 381 (529)
T ss_pred ccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC-ceEEEEECCchHHHHHH
Confidence 999999999999999999999987654 67899999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.||+++||++++|+++++|++|||||++|++|+.+|+ +++.+.++++
T Consensus 382 ~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~---------------------------------~~~~~~~g~e 428 (529)
T 3iyg_A 382 MERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLE---------------------------------NYATSMGSRE 428 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHH---------------------------------HHhhhcCChH
Confidence 9999999999999999999999999999999999999 7788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC--------CceeEEccCCccccccccCcccchHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE--------TTTGINVRKGAITNILEENVVQPLLVSTSAI 820 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~--------~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l 820 (841)
|+++++||+||+.||++||+|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.+|+++|
T Consensus 429 q~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al 508 (529)
T 3iyg_A 429 QLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSL 508 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHHH
Confidence 99999999999999999999999999999999999998765 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhcC
Q psy8873 821 TLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 821 ~~A~e~a~~iL~iD~iI~~ 839 (841)
++|+|+|+||||||+||+.
T Consensus 509 ~~A~e~a~~iL~iD~ii~~ 527 (529)
T 3iyg_A 509 KFATEAAITILRIDDLIKL 527 (529)
T ss_pred HHHHHHHHHHHhHHhhhcC
Confidence 9999999999999999975
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-98 Score=864.92 Aligned_cols=441 Identities=29% Similarity=0.489 Sum_probs=423.0
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc----hHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD----RENL 431 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~----~~~l 431 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+ ++.|
T Consensus 67 Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L 146 (515)
T 3iyg_H 67 AKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLL 146 (515)
T ss_pred HHHHHHHHHHhhceeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999986445 6788
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC--CCCc
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV--NGPK 508 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~--~m~~ 508 (841)
.++|+|+++||+.+.|.++|++|+++|+.+++ +.+|+++|+|++..||+..||++++|++|+++| ++. +||+
T Consensus 147 ~~va~tsl~sK~~s~~~~~i~~livdAv~~V~-----~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~ 221 (515)
T 3iyg_H 147 EKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-----DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPK 221 (515)
T ss_pred HHHHHHHhcCCcccccHHHHHHHHHHHHHHhc-----ccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCc
Confidence 99999999999999999999999999999995 357888999999999999999999999999999 551 4589
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||||++++++|++++++++.++.++++++++++.++|++++.++++++++.|++|||++++| ++++++||.+
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~dla~~~l~~ 296 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFAD 296 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcc-----cHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|
T Consensus 297 ~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t~~~l~E 375 (515)
T 3iyg_H 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-KTCTIILRGGAEQFMEE 375 (515)
T ss_pred cCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC-ceEEEEEeCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.+|+++||++++|++++++++|||||++|++++.+|+ +++.+.++++
T Consensus 376 ~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~e 422 (515)
T 3iyg_H 376 TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR---------------------------------DYSRTIPGKQ 422 (515)
T ss_pred HHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHH---------------------------------HHHhcCChHH
Confidence 9999999999999999999999999999999999999 7777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|+
T Consensus 423 q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~ 502 (515)
T 3iyg_H 423 QLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAAC 502 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877789999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||+||++.
T Consensus 503 ~iL~iD~ii~~~ 514 (515)
T 3iyg_H 503 LIVSVDETIKNP 514 (515)
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-98 Score=869.73 Aligned_cols=446 Identities=37% Similarity=0.607 Sum_probs=429.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 73 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~ 152 (543)
T 3ruv_A 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTK 152 (543)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++ ++.||+++|+|++..||++.||++++|++|+++|.+.+||+.++||
T Consensus 153 va~tsl~sK~~~~~~~~i~~livdAv~~V~~~--~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~ 230 (543)
T 3ruv_A 153 IAMTSITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDA 230 (543)
T ss_dssp HHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCT--TSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEE
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHhhcc--CCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCc
Confidence 99999999999999999999999999999863 3559999999999999999999999999999999444899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++++|++++++++.++.++++++++++.++|++++++++++|++.|+||||++++| ++.+++||.++||++
T Consensus 231 kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I-----~~~al~~L~~~gI~~ 305 (543)
T 3ruv_A 231 KIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVA 305 (543)
T ss_dssp EEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCB-----CHHHHHHHHHTTCEE
T ss_pred EEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCc-----cHHHHHHHHHcCcEE
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++++|+|||++|||++++++++++++++|+|+.|++.++|++++++|++|.++ +.|||+|||+|+.+++|.||++
T Consensus 306 v~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~TI~lrG~te~~l~E~kr~l 384 (543)
T 3ruv_A 306 ARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAV 384 (543)
T ss_dssp ECSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-ceeEEEecCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++|+++++|++|||||++|++++.+|+ +++.+.++++|++++
T Consensus 385 ~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~ 431 (543)
T 3ruv_A 385 DDAVGVVGCTIEDGRIVSGGGSTEVELSMKLR---------------------------------EYAEGISGREQLAVR 431 (543)
T ss_dssp HHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCeecCCcHHHHHHHHHHH---------------------------------HHhhcCChHHHHHHH
Confidence 99999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-cCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~-~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|++.|. .++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||
T Consensus 432 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~ 511 (543)
T 3ruv_A 432 AFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLR 511 (543)
T ss_dssp HHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999997 6777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|++.
T Consensus 512 id~ii~~~ 519 (543)
T 3ruv_A 512 IDDVIAAE 519 (543)
T ss_dssp CCEEEEEC
T ss_pred HHhheecC
Confidence 99999753
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-99 Score=872.49 Aligned_cols=448 Identities=35% Similarity=0.569 Sum_probs=428.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 84 P~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~ 163 (553)
T 3ko1_A 84 PAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRK 163 (553)
T ss_dssp HHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHH
T ss_pred hhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++. ....||+++|+|++..||++.||++++|++|+++|.+.+||+.++|
T Consensus 164 vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien 243 (553)
T 3ko1_A 164 IAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLEN 243 (553)
T ss_dssp HHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBS
T ss_pred HHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCcccccc
Confidence 999999999999999999999999999998642 1124899999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++++++++|++.|++|||++++| ++.+++||.++||+
T Consensus 244 ~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I-----~~~al~~L~~~gI~ 318 (553)
T 3ko1_A 244 AKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAKKGVL 318 (553)
T ss_dssp CEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCB-----CSHHHHHHHHHTCE
T ss_pred ceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccCh-----HHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|++|+
T Consensus 319 ~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~-~~~TI~lrG~te~~l~E~er~ 397 (553)
T 3ko1_A 319 AVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISILIRGGLERLVDETERA 397 (553)
T ss_dssp EECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS-SCEEEEECCSSTTHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCC-ceEEEeeeccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 398 l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i 444 (553)
T 3ko1_A 398 LRDALGTVADVIKDGRAIAGGGAVEIEIAKKLR---------------------------------KYAPQVGGKEQLAV 444 (553)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhhcCceecCCceeEeHHHHHHH---------------------------------HhccccCChhHhHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.||+++|++|+|+|++||
T Consensus 445 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL 524 (553)
T 3ko1_A 445 EAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVL 524 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEE
Confidence 9999999999999999999999999999999997766 789999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||++|++.
T Consensus 525 ~iD~ii~~~ 533 (553)
T 3ko1_A 525 RIDDVVSAG 533 (553)
T ss_dssp HEEEECCC-
T ss_pred ehHHHHHhh
Confidence 999999864
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-98 Score=865.25 Aligned_cols=448 Identities=37% Similarity=0.609 Sum_probs=428.2
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 77 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~ 156 (548)
T 1q3q_A 77 PAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLK 156 (548)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999988667899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++|++++||++++|++|+++|.+.+||+.++|
T Consensus 157 va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 236 (548)
T 1q3q_A 157 IAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVEN 236 (548)
T ss_dssp HHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESS
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecC
Confidence 999999999999999999999999999997532 1235888999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|+++++++++++++.|++|||++++| ++.+++||.++||+
T Consensus 237 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 311 (548)
T 1q3q_A 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIM 311 (548)
T ss_dssp EEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCB-----CHHHHHHHHHTTCE
T ss_pred CEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCc-----CHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|.||+
T Consensus 312 av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~er~ 390 (548)
T 1q3q_A 312 AVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTILIRGGTEHVIDEVERA 390 (548)
T ss_dssp EECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-CeEEEEECCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 391 l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i 437 (548)
T 1q3q_A 391 LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLD---------------------------------EYAKQVGGKEALAI 437 (548)
T ss_dssp HHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHH---------------------------------HHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHH---------------------------------HHhhhcCCcHHHHH
Confidence 999999999999999999999999999999999 67777788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||
T Consensus 438 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 517 (548)
T 1q3q_A 438 ENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILR 517 (548)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999977667899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|...
T Consensus 518 iD~iI~~~ 525 (548)
T 1q3q_A 518 IDDVIAAK 525 (548)
T ss_dssp CCEEEECC
T ss_pred HHHHHhcC
Confidence 99999763
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-98 Score=870.46 Aligned_cols=448 Identities=30% Similarity=0.494 Sum_probs=426.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLI 432 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~ 432 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|++ +++|++..+++.|.
T Consensus 78 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~ 157 (559)
T 3p9d_A 78 PAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLI 157 (559)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999 99999866688999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcC--CCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCcee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVN--PQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV 510 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~--~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~ 510 (841)
++|+|+++||+.+.|.++|++|+++|+.++++ +.+++.+|++.|+|++++||+++||++++|++|+++|.+.+||+.+
T Consensus 158 ~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~i 237 (559)
T 3p9d_A 158 NIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRI 237 (559)
T ss_dssp HHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEE
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceee
Confidence 99999999999999999999999999999973 1224679999999999999999999999999999999444899999
Q ss_pred e--cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 511 E--KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 511 ~--n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
+ ||||++++++|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.+++||.+
T Consensus 238 e~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I-----~~~al~~L~~ 312 (559)
T 3p9d_A 238 AGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVE 312 (559)
T ss_dssp CSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCC-----CGGGTHHHHH
T ss_pred ccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccC------CCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++|++|+++++.+|+|||++|||++++++ ++++++++|+|+.|++.++++++|++|++|.++ ++|||+|||+|
T Consensus 313 ~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t 391 (559)
T 3p9d_A 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH-SSSSIILRGAN 391 (559)
T ss_dssp TTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSS-CCCCEEEEESC
T ss_pred cCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCC-CEEEEEEcCCC
Confidence 99999999999999999999999999998 789999999999999999999999999999886 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|++|+++||++++|+++++|++|||||++|++|+.+|+ +++.
T Consensus 392 e~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 438 (559)
T 3p9d_A 392 DYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLD---------------------------------NFAT 438 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHH---------------------------------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHH---------------------------------HHhc
Confidence 9999999999999999999999999999999999999999999 7777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC------------ceeEEccCCccccccccCcc
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET------------TTGINVRKGAITNILEENVV 810 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~------------~~Gid~~~g~~~d~~~~gI~ 810 (841)
+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.++++ ++|||+.+|++.||++.|||
T Consensus 439 ~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~ 518 (559)
T 3p9d_A 439 TVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVL 518 (559)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCC
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccccccccccccccccceeEECCCCcEeehhhccCE
Confidence 889999999999999999999999999999999999999999987654 79999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+.||+++|++|+|+|++|||||++|++.
T Consensus 519 dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 548 (559)
T 3p9d_A 519 EPTISKVKSLKSALEACVAILRIDTMITVD 548 (559)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHTEEEEEECC
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHHhhhhcC
Confidence 999999999999999999999999999763
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-98 Score=863.82 Aligned_cols=448 Identities=35% Similarity=0.595 Sum_probs=427.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 75 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~ 154 (543)
T 1a6d_B 75 PAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLK 154 (543)
T ss_dssp HHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999988667899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++||+++||++++|++|+++|.+.+||+.++|
T Consensus 155 va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 234 (543)
T 1a6d_B 155 MAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKD 234 (543)
T ss_dssp HHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEE
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecC
Confidence 999999999999999999999999999997532 1135889999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.+++||.++||+
T Consensus 235 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 309 (543)
T 1a6d_B 235 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSRAGIY 309 (543)
T ss_dssp EEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHTTCE
T ss_pred CeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCc-----CHHHHHHHHHCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|++|+
T Consensus 310 av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~ 388 (543)
T 1a6d_B 310 AVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSILVRGETEHVVDEMERS 388 (543)
T ss_dssp EECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS-SCEEEEEEESSHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 389 l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~~q~~i 435 (543)
T 1a6d_B 389 ITDSLHVVASALEDGAYAAGGGATAAEIAFRLR---------------------------------SYAQKIGGRQQLAI 435 (543)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCccHHHHHHHHHHH---------------------------------HHhhhcCChHHHHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||.+.|||||+.+|+++|++|+|+|++|||
T Consensus 436 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 515 (543)
T 1a6d_B 436 EKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILR 515 (543)
T ss_dssp HHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|+..
T Consensus 516 id~iI~~~ 523 (543)
T 1a6d_B 516 IDDVIATK 523 (543)
T ss_dssp EEEEEC--
T ss_pred HHHHHhcC
Confidence 99999763
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-97 Score=855.68 Aligned_cols=447 Identities=39% Similarity=0.622 Sum_probs=426.7
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADREN 430 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~ 430 (841)
||..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++. .+++.
T Consensus 63 hP~Akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 142 (515)
T 3iyg_E 63 HQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEP 142 (515)
T ss_pred CHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999998753 35789
Q ss_pred HHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCcee
Q psy8873 431 LIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV 510 (841)
Q Consensus 431 l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~ 510 (841)
|.++|+|+++||....|.++|+++++||+..+.+. +...+|+++|+|++++||++.||++++|++|+++|.+.+||+.+
T Consensus 143 l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~-~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~ 221 (515)
T 3iyg_E 143 LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADM-QRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQV 221 (515)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccc-ccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccC
Confidence 99999999999999999999999999999999653 23468889999999999999999999999999999434999999
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+|+||++++|+|+++++++++++.++++++++.+.++|++++.++++++++.|+||||++++| ++.++++|.++|
T Consensus 222 ~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I-----~~~al~~L~~~~ 296 (515)
T 3iyg_E 222 EDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF-----DDEANHLLLQND 296 (515)
T ss_pred CCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----CHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
|++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|.++ +.|||+|||+|+.+++|
T Consensus 297 I~~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-~~~tI~lrG~te~~l~E 375 (515)
T 3iyg_E 297 LPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RAVTIFIRGGNKMIIEE 375 (515)
T ss_pred CEEEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC-ceEEEEEeCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999997 899999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
++|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++
T Consensus 376 ~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~ 422 (515)
T 3iyg_E 376 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS---------------------------------QEADKCPTLE 422 (515)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHH---------------------------------HHhccCCcHH
Confidence 9999999999999999999999999999999999999 7777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETV 827 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a 827 (841)
|+++++|++||+.||++|++|||+|+.+++.+|++.|.. +++++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 423 q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a 502 (515)
T 3iyg_E 423 QYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMV 502 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999975 4568999999999999999999999999999999999999
Q ss_pred HHHHchhhhhcC
Q psy8873 828 RSILKIDDIVNT 839 (841)
Q Consensus 828 ~~iL~iD~iI~~ 839 (841)
++|||||+||++
T Consensus 503 ~~iL~iD~ii~~ 514 (515)
T 3iyg_E 503 RMILKIDDIRKP 514 (515)
T ss_pred HHHHhHHHhhcC
Confidence 999999999975
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-97 Score=860.97 Aligned_cols=446 Identities=36% Similarity=0.597 Sum_probs=426.1
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++| + .+++.|.+
T Consensus 76 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~-~~~~~l~~ 153 (545)
T 1a6d_A 76 PTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-S-TDDATLRK 153 (545)
T ss_dssp HHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C-CCHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999999 6 68899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++|++++||++++|++|+++|.+.+||+.++|
T Consensus 154 va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 233 (545)
T 1a6d_A 154 IALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKN 233 (545)
T ss_dssp HHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEE
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecC
Confidence 999999999999999999999999999997532 1135888999999999999999999999999999944499999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++++++++|++.|++|||++++| ++.+++||.++||+
T Consensus 234 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 308 (545)
T 1a6d_A 234 AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAKEGIY 308 (545)
T ss_dssp EEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHHTCE
T ss_pred CEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|.+|+
T Consensus 309 av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~kr~ 387 (545)
T 1a6d_A 309 AVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSILIRGGTDHVVSEVERA 387 (545)
T ss_dssp EECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCS-SCEEEEECCSSSTTHHHHHHH
T ss_pred EeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 388 l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i 434 (545)
T 1a6d_A 388 LNDAIRVVAITKEDGKFLWGGGAVEAELAMRLA---------------------------------KYANSVGGREQLAI 434 (545)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHH---------------------------------HHhhccCccHHHHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.+|+++|++|+|+|++|||
T Consensus 435 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 514 (545)
T 1a6d_A 435 EAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILR 514 (545)
T ss_dssp HHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|...
T Consensus 515 id~iI~~~ 522 (545)
T 1a6d_A 515 IDDVIASK 522 (545)
T ss_dssp CCEEC---
T ss_pred HHHHHhcc
Confidence 99999763
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-97 Score=855.12 Aligned_cols=442 Identities=28% Similarity=0.449 Sum_probs=424.3
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||+++||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++. +++.|.+
T Consensus 64 p~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~L~~ 142 (517)
T 3iyg_Z 64 PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLID 142 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCC-CHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999998875 7889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|+++++||+..+.+. ...+|+++|+|++++||+..||++++|++|++++ ++ +||+.++|
T Consensus 143 va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p-~m~~~ien 219 (517)
T 3iyg_Z 143 VARTSLRTKVHAELADVLTEAVVDSILAIKKQ--DEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHP-DMKKRVED 219 (517)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhheeccC--CCcCChhHheeeeecCCCccccceEeeEEEeccCCCC-CccccccC
Confidence 99999999999999999999999999998652 3468999999999999999999999999999999 55 89999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------EEEecCCcccccccHHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN---------VLLVQKSILRDAISDLAI 583 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~---------lvi~~~~I~~~~l~~~~~ 583 (841)
|+|++++++|++++++++.++.++++++++.+.++|++++...+++|...+++ |||++++| +++++
T Consensus 220 ~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I-----~d~al 294 (517)
T 3iyg_Z 220 AYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGI-----DPFSL 294 (517)
T ss_pred CeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccC-----CHHHH
Confidence 99999999999999999999999999999999999999999999999998876 58889999 99999
Q ss_pred HHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCC-ceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 584 ~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
+||.++||++++++++++|+|||++|||+++++++++++++ +|+|+ |++.++|+++|++|++|+++ +.|||+|||+|
T Consensus 295 ~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~-~~~TI~lrG~t 372 (517)
T 3iyg_Z 295 DALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP-RSVTLLIKGPN 372 (517)
T ss_pred HHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc-hhheeeecCCc
Confidence 99999999999999999999999999999999999999999 99999 99999999999999999987 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|.||+++||++++|+++++|++|||||++|++++.+|+ +++.
T Consensus 373 ~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 419 (517)
T 3iyg_Z 373 KHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALV---------------------------------KYKP 419 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHH---------------------------------HHhc
Confidence 9999999999999999999999999999999999999999999 7777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHH
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITL 822 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~ 822 (841)
+.++++|+++++||+||+.+|++||+|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++
T Consensus 420 ~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~ 499 (517)
T 3iyg_Z 420 SVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998878889999999999999999999999999999999
Q ss_pred HHHHHHHHHchhhhhcC
Q psy8873 823 STETVRSILKIDDIVNT 839 (841)
Q Consensus 823 A~e~a~~iL~iD~iI~~ 839 (841)
|+|+|+||||||+||++
T Consensus 500 A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 500 CTVIATNILLVDEIMRA 516 (517)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999975
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-96 Score=847.77 Aligned_cols=434 Identities=30% Similarity=0.496 Sum_probs=416.0
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc---chHHHHHHhhhh
Q psy8873 362 LSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA---DRENLIKSAATS 438 (841)
Q Consensus 362 ~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~---~~~~l~~ia~t~ 438 (841)
.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++.. +++.|.++|+|+
T Consensus 74 ~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~ts 153 (513)
T 3iyg_B 74 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTT 153 (513)
T ss_pred HHHHhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhh
Confidence 44556778999999999999999999999999999999999999999999999999999998732 578999999999
Q ss_pred ccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEE
Q psy8873 439 LNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLI 518 (841)
Q Consensus 439 l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl 518 (841)
+++|+.+.|.++|++|+++|+.++++ .+|+++|+|+++.||+..||++++|++|+++|.+ .||+.++||||+++
T Consensus 154 lssK~~~~~~~~i~~livdAv~~V~~-----~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~-~m~~~~en~kIll~ 227 (513)
T 3iyg_B 154 LSSKLLTHHKDHFTKLAVEAVLRLKG-----SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV-NQPKRIENAKILIA 227 (513)
T ss_pred hcccccccchHHHHHHHHHHHHHhcc-----cCCcCeEEEEEeCCCCccceeEEeeEEEeccccC-CCceeecCceEEEE
Confidence 99999999999999999999999974 3788899999999999999999999999999943 29999999999999
Q ss_pred EeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecC
Q psy8873 519 QFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597 (841)
Q Consensus 519 ~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 597 (841)
+++|++++++ ++.++.++++++++++.+.|++++.+++++|++.|++|||++++| ++.+++||.++||++++++
T Consensus 228 ~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~~~al~~L~~~~I~av~~~ 302 (513)
T 3iyg_B 228 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI-----YNYPEQLFGAAGVMAIEHA 302 (513)
T ss_pred cCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHHHHcCceEEecC
Confidence 9999999999 999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 598 ~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
++.+|+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++|+++ +.|||+|||+|+.+++|.+|+++||+
T Consensus 303 ~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t~~~l~E~kr~l~DAl 381 (513)
T 3iyg_B 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EACTIVLRGATQQILDEAERSLHDAL 381 (513)
T ss_pred CHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886 89999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHH
Q psy8873 678 CVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 757 (841)
+++|++++++++|||||++|++++.+|+ +++.+.++++|+++++|++
T Consensus 382 ~~~r~av~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i~~~a~ 428 (513)
T 3iyg_B 382 CVLAQTVKDSRTVYGGGCSEMLMAHAVT---------------------------------QLASRTPGKEAVAMESYAK 428 (513)
T ss_pred HHHHHHHhCCcEEeCCcHHHHHHHHHHH---------------------------------HHhhccCcHHHHHHHHHHH
Confidence 9999999998999999999999999999 7777889999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhh
Q psy8873 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837 (841)
Q Consensus 758 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI 837 (841)
||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|
T Consensus 429 ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii 508 (513)
T 3iyg_B 429 ALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNII 508 (513)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy8873 838 NTL 840 (841)
Q Consensus 838 ~~~ 840 (841)
+++
T Consensus 509 ~~~ 511 (513)
T 3iyg_B 509 KAA 511 (513)
T ss_pred hcC
Confidence 864
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-96 Score=847.97 Aligned_cols=442 Identities=27% Similarity=0.474 Sum_probs=420.3
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc--cCCccchHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMST--PITLADRENLIK 433 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~--~~~~~~~~~l~~ 433 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++ +.+..+++.|.+
T Consensus 67 Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~ 146 (512)
T 3iyg_Q 67 AKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSS 146 (512)
T ss_pred HHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999854 334448899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+ +.++|++|+++|+.+++++ ++.+|+++|+|.+.+||++.||++++|++|+++|. +||+.++|+
T Consensus 147 va~tsl~sK~~~-~~~~i~~livdAv~~V~~~--~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~--~~~~~~~n~ 221 (512)
T 3iyg_Q 147 LLHTSVMSKQYG-NEVFLAKLIAQACVSIFPD--SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETE--GDVTSVKDA 221 (512)
T ss_pred HHHHHhCCCCcc-chHHHHHHHHHHHHHHhcc--CCcccHhHeeEeeccCCCcccceEEeeEEEecCcC--CCCcccccC
Confidence 999999999754 7899999999999999863 34689999999999999999999999999999984 389999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++++|++.+++.+.++.++++++++++.+.|++++.++++++++.|++|||++++| ++++++||.++||++
T Consensus 222 kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~la~~~l~k~~I~a 296 (512)
T 3iyg_Q 222 KIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIML 296 (512)
T ss_pred ceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++.+|+|||++|||++++++++++++++|+|++|++.++|++++++|++|+..+++|||+|||+|+.+++|.+|++
T Consensus 297 v~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i 376 (512)
T 3iyg_Q 297 VRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAV 376 (512)
T ss_pred EEeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986569999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++|+++++|++|||||++|++++.+|+ +++.+.++++|++++
T Consensus 377 ~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~ 423 (512)
T 3iyg_Q 377 DDGVNTFKVLTRDKRLVPGGGATEIELAKQIT---------------------------------SYGETCPGLEQYAIK 423 (512)
T ss_pred HHHHHHHHHHHhCCCEecCCcHHHHHHHHHHH---------------------------------HHhccCCcHHHHHHH
Confidence 99999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCC--ccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+| ++.||++.|||||+.||+++|++|+|+|++||
T Consensus 424 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL 503 (512)
T 3iyg_Q 424 KFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVL 503 (512)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888999999965 99999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||+||+++
T Consensus 504 ~id~ii~~k 512 (512)
T 3iyg_Q 504 RVDQIIMAK 512 (512)
T ss_pred hHhHheecC
Confidence 999999875
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-96 Score=854.76 Aligned_cols=447 Identities=35% Similarity=0.587 Sum_probs=422.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc----hH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD----RE 429 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~----~~ 429 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+ ++
T Consensus 99 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e 178 (562)
T 3p9d_E 99 EIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRD 178 (562)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999887532 27
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCce
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKR 509 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~ 509 (841)
.|.++|+|+++||+.+.|.++|+++++||+..+.+. ..+.+|+++|+|++++||+++||++++|++|+++|.+.+||+.
T Consensus 179 ~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~-~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~ 257 (562)
T 3p9d_E 179 FLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDK-DRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKC 257 (562)
T ss_dssp HHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTT-TCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHheeeccc-ccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcc
Confidence 899999999999999999999999999999999653 2357899999999999999999999999999999943499999
Q ss_pred e------ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHH
Q psy8873 510 V------EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI 583 (841)
Q Consensus 510 ~------~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~ 583 (841)
+ +|+||++++|+|++.+.++++++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.++
T Consensus 258 ~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I-----~~~Al 332 (562)
T 3p9d_E 258 VLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF-----DDEAN 332 (562)
T ss_dssp ----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSC-----CSHHH
T ss_pred cccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCC-----CHHHH
Confidence 9 899999999999999999989999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCC
Q psy8873 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGS 661 (841)
Q Consensus 584 ~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~ 661 (841)
++|.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|.++ +.|||+|||+
T Consensus 333 ~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~ 411 (562)
T 3p9d_E 333 HLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGS 411 (562)
T ss_dssp HHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-SCCEEEEECT
T ss_pred HHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-CeEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999985 899999999987 8999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhh
Q psy8873 662 NKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYA 741 (841)
Q Consensus 662 t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (841)
|+.+++|.||+++||++++|+++++|++|||||++|++++.+|+ +++
T Consensus 412 te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~ 458 (562)
T 3p9d_E 412 NKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVS---------------------------------EEA 458 (562)
T ss_dssp TTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHH---------------------------------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHH---------------------------------HHh
Confidence 99999999999999999999999999999999999999999999 777
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHH
Q psy8873 742 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAI 820 (841)
Q Consensus 742 ~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l 820 (841)
.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.. ++.++|||+.+|++.||++.|||||+.||+++|
T Consensus 459 ~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al 538 (562)
T 3p9d_E 459 DKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQI 538 (562)
T ss_dssp HTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHH
Confidence 7888999999999999999999999999999999999999999975 456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhcCC
Q psy8873 821 TLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 821 ~~A~e~a~~iL~iD~iI~~~ 840 (841)
++|+|+|++|||||+||++.
T Consensus 539 ~~A~e~a~~iL~iD~ii~~~ 558 (562)
T 3p9d_E 539 LLATQLCRMILKIDNVIISG 558 (562)
T ss_dssp HHHHHHHHHHHTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999863
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-97 Score=857.99 Aligned_cols=445 Identities=31% Similarity=0.505 Sum_probs=425.7
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RE 429 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~ 429 (841)
||..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++..+ ++
T Consensus 77 hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 156 (550)
T 3p9d_G 77 HPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRE 156 (550)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC------
T ss_pred CHHHHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhHH
Confidence 556778999999999999999999999999999999999999999999999999999999999999999987555 78
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNG 506 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m 506 (841)
.|.++|+|+++||+.+.|.++|++|++||+.++++ ..+|+++|.|++++||+++||++++|++|+++| ++ .+|
T Consensus 157 ~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~----~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~ 232 (550)
T 3p9d_G 157 LLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR----NDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQ 232 (550)
T ss_dssp CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCS----SSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCS
T ss_pred HHHHHHHHhccCccccccHhHHHHHHHHHHHHhCc----cccCchheeEEEecCCCccceeEEeeEEEeccccccccccC
Confidence 99999999999999999999999999999999963 358899999999999999999999999999999 54 379
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
|++++||+|++++++|++++++++.++.++++++++++.+.|++++.+++++|++.|++|||++++| ++++++||
T Consensus 233 ~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I-----~dla~~~L 307 (550)
T 3p9d_G 233 PKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFF 307 (550)
T ss_dssp CSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCC-----CHHHHHTT
T ss_pred cccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc-----cHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 587 ~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++++++|++|++|+++ ++|||+|||+|+.++
T Consensus 308 ~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~-~~~tI~lrG~te~~l 386 (550)
T 3p9d_G 308 ADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA-KTCTLLLRGGAEQVI 386 (550)
T ss_dssp GGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-CCCCCCBCSSSHHHH
T ss_pred HHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-ceeEEEEeCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|.||+++||++++|+++++|++|||||++|++++.+|+ +++.+.++
T Consensus 387 ~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g 433 (550)
T 3p9d_G 387 AEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR---------------------------------DYSKTIAG 433 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHH---------------------------------HHHHTCCS
T ss_pred HHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHH---------------------------------HHhhcCCh
Confidence 999999999999999999999999999999999999999 77778899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+
T Consensus 434 ~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~ 513 (550)
T 3p9d_G 434 KQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEA 513 (550)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
|++|||||++|+..
T Consensus 514 a~~iL~id~ii~~~ 527 (550)
T 3p9d_G 514 TNLILSVDETITNK 527 (550)
T ss_dssp HHHHHTEEEEECCC
T ss_pred HHHHHhHHHHhhCC
Confidence 99999999999864
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-96 Score=849.73 Aligned_cols=443 Identities=28% Similarity=0.485 Sum_probs=416.7
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL-LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAA 436 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l-l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~ 436 (841)
++++.+++||.++||||||++|||++||+++.++ +.+|+||+.|++||++|++.++++|+++++|++..+++.|.++|+
T Consensus 77 ll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~L~~vA~ 156 (590)
T 3p9d_C 77 SMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQ 156 (590)
T ss_dssp THHHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTHHHHHHHT
T ss_pred HHHHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Confidence 5567888899999999999999999999999999 999999999999999999999999999999988767899999999
Q ss_pred hhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC-------ccccc-ceEEEEccCCccccceeEEeEEEecCC-CCCCCC
Q psy8873 437 TSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT-------NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP 507 (841)
Q Consensus 437 t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~-------~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~ 507 (841)
|++++|+.+.|.++|++|+++|+.+++++...+ .+|++ +|+|++++||++.||++++|++|++++ ++ .||
T Consensus 157 tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~-~m~ 235 (590)
T 3p9d_C 157 ASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP-KMS 235 (590)
T ss_dssp TTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCT-TSC
T ss_pred HHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCC-CCc
Confidence 999999999999999999999999998642111 35554 799999999999999999999999999 65 899
Q ss_pred ceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH
Q psy8873 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587 (841)
Q Consensus 508 ~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~ 587 (841)
+.++||||++++++|+++++++++++.++++++++++.+.|++++++++++|++.|++|||++++| ++++++||.
T Consensus 236 ~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I-----~d~Al~~L~ 310 (590)
T 3p9d_C 236 RHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGV-----SDLAQHYLL 310 (590)
T ss_dssp SCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCC-----CTHHHHHHH
T ss_pred ceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCce-------------
Q psy8873 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRT------------- 653 (841)
Q Consensus 588 ~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~------------- 653 (841)
++||++|+++++.+|+|||++|||+++++++++++++||+ |+.|++..++++++++|++|.++ +.
T Consensus 311 k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~-~~~~~~~~~~~~~~~ 389 (590)
T 3p9d_C 311 KGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEP-GSGSGWSHPQFEKGS 389 (590)
T ss_dssp HTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC--------------------
T ss_pred hccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCc-ccccccccccccccc
Confidence 9999999999999999999999999999999999999999 99999999999999999998764 34
Q ss_pred -------------------------------------------EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Q psy8873 654 -------------------------------------------LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 690 (841)
Q Consensus 654 -------------------------------------------~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vv 690 (841)
|||+|||+|+.+++|.+|+++||++++|+++++|++|
T Consensus 390 ~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iV 469 (590)
T 3p9d_C 390 GKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLS 469 (590)
T ss_dssp --------------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred chhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999999999999999999999998899
Q ss_pred eCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhc
Q psy8873 691 AGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770 (841)
Q Consensus 691 pGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~Na 770 (841)
||||++|++++.+|+ +++.+.++++|+++++|++||+.||++||+||
T Consensus 470 pGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na 516 (590)
T 3p9d_C 470 PGGGATEMAVSVKLA---------------------------------EKAKQLEGIQQWPYQAVADAMECIPRTLIQNA 516 (590)
T ss_dssp CTTTHHHHHHHHHHH---------------------------------HHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTT
T ss_pred eCccHHHHHHHHHHH---------------------------------HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999 77778899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 771 G~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+++
T Consensus 517 G~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 586 (590)
T 3p9d_C 517 GGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGV 586 (590)
T ss_dssp CSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998888889999999999999999999999999999999999999999999999865
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-96 Score=853.89 Aligned_cols=444 Identities=26% Similarity=0.411 Sum_probs=419.7
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADRENLIK 433 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~l~~ 433 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++. .+++.|.+
T Consensus 73 akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~ 152 (546)
T 3p9d_F 73 AVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQ 152 (546)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999999999998753 47889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|++++|+.+.|.++|+++++||+..+.+. +...+|+++|+|++++||+..||++++|++|++++ ++ .||+.++|
T Consensus 153 vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~-~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~-~m~~~~en 230 (546)
T 3p9d_F 153 VARSSLLTKVDADLTEVLTPIVTDAVLSVYDA-QADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHP-DMPTRVKN 230 (546)
T ss_dssp HHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH-HHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSS-SSCSSBCS
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHhheEeecC-CCCcccchheEEEEecCCCccccEEEeeEEEecccccc-cCcceecC
Confidence 99999999999999999999999999998632 23468999999999999999999999999999999 55 89999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC---------C-cEEEecCCcccccccHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG---------C-NVLLVQKSILRDAISDLA 582 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g---------~-~lvi~~~~I~~~~l~~~~ 582 (841)
|+|++++|+|++++++++.++.++++++++.+.+.|++++.+.+++|...+ . +|||++++| ++++
T Consensus 231 ~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I-----~~~A 305 (546)
T 3p9d_F 231 AYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI-----DPMS 305 (546)
T ss_dssp CCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCC-----CHHH
T ss_pred ceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcC-----cHHH
Confidence 999999999999999999999999999999999999999999999998764 2 389999999 9999
Q ss_pred HHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 583 ~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|
T Consensus 306 l~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t 384 (546)
T 3p9d_F 306 LDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-KSCTILIKGST 384 (546)
T ss_dssp HHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-SCEEEECCCSC
T ss_pred HHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-ceEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhh---
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTK--- 739 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 739 (841)
+.+++|++|+++||++++|+++++|++|||||++|++++.+|+ +
T Consensus 385 e~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 431 (546)
T 3p9d_F 385 HYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLR---------------------------------SANM 431 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHH---------------------------------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHH---------------------------------hhhh
Confidence 9999999999999999999999999999999999999999999 5
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-----CCCceeEEccCCccccccccCcccchH
Q psy8873 740 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-----GETTTGINVRKGAITNILEENVVQPLL 814 (841)
Q Consensus 740 ~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-----~~~~~Gid~~~g~~~d~~~~gI~D~~~ 814 (841)
|+.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.. ++.++|||+.+|++.||++.|||||+.
T Consensus 432 ~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~ 511 (546)
T 3p9d_F 432 NKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYR 511 (546)
T ss_dssp TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHH
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhccCEecHH
Confidence 577889999999999999999999999999999999999999999873 456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 815 VSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 815 vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+++|++|+|+|++|||||+||++.
T Consensus 512 vk~~al~~A~~~a~~iL~iD~ii~~~ 537 (546)
T 3p9d_F 512 VLRNAITGATGIASNLLLCDELLRAG 537 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-96 Score=857.07 Aligned_cols=446 Identities=27% Similarity=0.456 Sum_probs=412.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccC--CccchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPI--TLADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~--~~~~~~~l 431 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|++++.++ +..+++.|
T Consensus 80 P~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l 159 (568)
T 3p9d_H 80 PAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNEL 159 (568)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHH
T ss_pred HHHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHH
Confidence 5567888999999999999999999999999999999999999999999999999999999999999875 33478999
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCC----CCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCC
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP----QRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGP 507 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~----~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~ 507 (841)
.++|+|+++||+.+.+ ++|++|+++|+.+++++ .+...||+++|+|++++||+++||++++|++|++++. +||
T Consensus 160 ~~va~tsl~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~--~m~ 236 (568)
T 3p9d_H 160 LKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE--GHV 236 (568)
T ss_dssp HHHHHHHHTTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS--SGG
T ss_pred HHHHHHHhhccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc--CCc
Confidence 9999999999998888 99999999999999763 1223689999999999999999999999999999973 789
Q ss_pred ceee---cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHH
Q psy8873 508 KRVE---KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIH 584 (841)
Q Consensus 508 ~~~~---n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~ 584 (841)
+.++ ||||++++|+|+++++++++++.++++++++.+.++|++++++++++|++.|++|||++++| ++++++
T Consensus 237 ~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~~al~ 311 (568)
T 3p9d_H 237 KSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGV-----GELALH 311 (568)
T ss_dssp GSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCC-----CHHHHH
T ss_pred EEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCc-----ChHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-CCceEEEEEeCCCH
Q psy8873 585 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNK 663 (841)
Q Consensus 585 ~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~ 663 (841)
||.++||++|+++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. .++.|||+|||+|+
T Consensus 312 ~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~ 391 (568)
T 3p9d_H 312 YLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQ 391 (568)
T ss_dssp HHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCH
T ss_pred HHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999983 34999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhh
Q psy8873 664 LVLDEAARSLHDALCVVRCLVK--QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYA 741 (841)
Q Consensus 664 ~~l~e~~r~i~dal~~~~~~l~--~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (841)
.+++|.||+++||++++|++++ ++++|||||++|++|+.+|+ +++
T Consensus 392 ~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~---------------------------------~~a 438 (568)
T 3p9d_H 392 NNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT---------------------------------KYG 438 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHH---------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHH---------------------------------HHh
Confidence 9999999999999999999999 99999999999999999999 778
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc--------CCCceeEEccCCc---cccccccCcc
Q psy8873 742 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GETTTGINVRKGA---ITNILEENVV 810 (841)
Q Consensus 742 ~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--------~~~~~Gid~~~g~---~~d~~~~gI~ 810 (841)
.+.++++|+++++||+||+.||++||+|||+|+.+++.+|++.|.. +++++|||+.+|+ +.||++.|||
T Consensus 439 ~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~ 518 (568)
T 3p9d_H 439 ERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIY 518 (568)
T ss_dssp HTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCE
Confidence 8889999999999999999999999999999999999999999865 5668999999997 9999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+.||+++|++|+|+|++|||||+||+++
T Consensus 519 dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 548 (568)
T 3p9d_H 519 DMLATKKFAINVATEAATTVLSIDQIIMAK 548 (568)
T ss_dssp HHHHHHHHHHHCCEECBCCC----------
T ss_pred EcHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 999999999999999999999999999864
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-96 Score=849.57 Aligned_cols=442 Identities=31% Similarity=0.506 Sum_probs=419.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHK-GIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RE 429 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~-gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~ 429 (841)
|..+++++.+++||.++||||||++|||++||+++++++.+ |+||+.|++||++|.+.++++|++++++++..+ ++
T Consensus 72 P~Akll~e~a~~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 151 (527)
T 3p9d_B 72 PAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFRE 151 (527)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHH
Confidence 56778999999999999999999999999999999999999 999999999999999999999999999987422 78
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCce
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKR 509 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~ 509 (841)
.|.++|+|+++||+.+.|.++|++|+++|+.+++++ + |+++|+|+++.||++.||++++|++|+++|.+.+ |++
T Consensus 152 ~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~~V~~~---~--~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~~ 225 (527)
T 3p9d_B 152 DLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGS---T--NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKR 225 (527)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHTTCTT---C--CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CSC
T ss_pred HHHHHHHhccccCcccchHHHHHHHHHHHHHHhccc---C--CcceEEEEEcCCCCccccEEEEeEEEecccCCCC-Cee
Confidence 999999999999999999999999999999999752 2 6678999999999999999999999999993324 889
Q ss_pred eecceEEEEEeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 510 VEKAKIGLIQFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
++||||++++|+|++++++ ++.++.++++++++.+.++|++++++.+++|++.|++|||++++| +++++++|.+
T Consensus 226 ~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I-----~~~al~~L~~ 300 (527)
T 3p9d_B 226 IENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLI-----YDYPEQLFTD 300 (527)
T ss_dssp CSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCC-----TTTHHHHHHH
T ss_pred eecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHH
Confidence 9999999999999999999 799999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
++|++++++++.+|+|+|++|||++++++++++++++|+|+.|++..+++++|++|++|+++ ++|||+|||+|+.+++|
T Consensus 301 ~~i~av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrg~te~~l~E 379 (527)
T 3p9d_B 301 LGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-EACTIVLRGATDQTLDE 379 (527)
T ss_dssp TCBCCCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCS-CCEECBCCTTCTTHHHH
T ss_pred CCCEEEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCC-CEEEEEEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.+|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++
T Consensus 380 ~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~e 426 (527)
T 3p9d_B 380 AERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD---------------------------------TEAQNIDGKK 426 (527)
T ss_dssp HHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHH---------------------------------HHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHH---------------------------------HHHhccCcHH
Confidence 9999999999999999999999999999999999999 6777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
|+++++|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|+
T Consensus 427 q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~ 506 (527)
T 3p9d_B 427 SLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAE 506 (527)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877889999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||++|+++
T Consensus 507 ~iL~id~ii~~~ 518 (527)
T 3p9d_B 507 VLLRVDNIIRAR 518 (527)
T ss_dssp HHHHCCEEEEEC
T ss_pred HHHhHHHHHhcC
Confidence 999999999753
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-88 Score=773.14 Aligned_cols=466 Identities=35% Similarity=0.599 Sum_probs=384.8
Q ss_pred eeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy8873 335 LLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414 (841)
Q Consensus 335 ~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~ 414 (841)
..++.+..+.+-+. ...||..+++++.+++||.++||||||+++||++||+++++++++|+||+.|++||++|++.+++
T Consensus 9 ~~iTnDG~tIlk~i-~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~ 87 (500)
T 3aq1_B 9 IVITNDGATILKEM-DIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCRE 87 (500)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEECcHHHHHHhC-cCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 46777888888777 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCccc-ccceEEEEccCCccccceeE
Q psy8873 415 ILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVD-LKDIKVIRKLGGTVEDTELV 492 (841)
Q Consensus 415 ~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d-~~~I~I~k~~Gg~~~dS~li 492 (841)
+|+++++|++..+++.|.++|+|+++||+...|.++|++|+++|+.+++++. ....+| +++|+|++++||+++||+++
T Consensus 88 ~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv 167 (500)
T 3aq1_B 88 ILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELI 167 (500)
T ss_dssp HHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEE
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCccceEEE
Confidence 9999999987667999999999999999999999999999999999997532 122477 77899999999999999999
Q ss_pred EeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCC
Q psy8873 493 DGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS 572 (841)
Q Consensus 493 ~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 572 (841)
+|++|++++.+.+||+.++||||++++++|++++++++.++.++++++++.+.++|+++++++++++++.|++|||++++
T Consensus 168 ~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~ 247 (500)
T 3aq1_B 168 DGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG 247 (500)
T ss_dssp SEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSC
T ss_pred eeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCC
Confidence 99999999944499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCc
Q psy8873 573 ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652 (841)
Q Consensus 573 I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 652 (841)
| ++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +
T Consensus 248 I-----~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~ 321 (500)
T 3aq1_B 248 I-----DDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-K 321 (500)
T ss_dssp B-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTC-C
T ss_pred c-----CHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCCC-c
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999986 9
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhh
Q psy8873 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIE 732 (841)
Q Consensus 653 ~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (841)
.|||+|||+|+.+++|.+|+++||++++|+++++|++|||||++|++++.+|+
T Consensus 322 ~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~--------------------------- 374 (500)
T 3aq1_B 322 AVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLS--------------------------- 374 (500)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHH---------------------------
T ss_pred eEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccc
Q psy8873 733 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQP 812 (841)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~ 812 (841)
+++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|||+.+|++.||++.|||||
T Consensus 375 ------~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp 448 (500)
T 3aq1_B 375 ------EYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEP 448 (500)
T ss_dssp ------HHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEE
T ss_pred ------HHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCC
Confidence 77777889999999999999999999999999999999999999999877778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 813 LLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 813 ~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+.+|+++|++|+|+|++|||||++|+..
T Consensus 449 ~~vk~~al~~A~e~a~~iL~iD~iI~~~ 476 (500)
T 3aq1_B 449 LRIKTQAINAAMEATVMILRIDDVVASK 476 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999763
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-84 Score=742.50 Aligned_cols=399 Identities=22% Similarity=0.314 Sum_probs=363.6
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 69 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~l~~v 146 (543)
T 1we3_A 69 GAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE--DRKAIEEV 146 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHH
T ss_pred HHHHHHHHHHhhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHh
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++ + +++++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 147 A~iS~~-~------~~i~~li~dAv~~V~~---~g-----~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m 209 (543)
T 1we3_A 147 ATISAN-D------PEVGKLIADAMEKVGK---EG-----IITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETM 209 (543)
T ss_dssp HHHHHT-C------HHHHHHHHHHHHTTCT---TS-----EEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTT
T ss_pred hhhhcC-C------HHHHHHHHHHHHHhCc---CC-----cEEEe--cCCccccceEEEcCEEEecCccccccccCcccC
Confidence 999987 3 7999999999999974 22 36666 69999988 999999999999 53 357
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|+++++++ +++++ +.++++++.+.|++|||++++| ++.++++|
T Consensus 210 ~~~~en~~Ill~d~~I-------------s~~~~-----------l~~~le~i~~~g~~lvii~~~I-----~~~Al~~L 260 (543)
T 1we3_A 210 EAVLEDAFILIVEKKV-------------SNVRE-----------LLPILEQVAQTGKPLLIIAEDV-----EGEALATL 260 (543)
T ss_dssp BCCEEEEEEEEESSCB-------------CCHHH-----------HHHHHHHHHTTTCCEEEEESCB-----CHHHHHHH
T ss_pred ceeecCceEEEECCCc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHH
Confidence 8889999999999865 44533 5678999999999999999999 77777777
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN- 649 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~- 649 (841)
.. .+|++|+ ++++++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 261 ~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 337 (543)
T 1we3_A 261 VVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKK 337 (543)
T ss_dssp HHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCH
T ss_pred HHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCH
Confidence 64 6889998 678899999999999999996 89999999999999986 5789999999875
Q ss_pred ---------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 650 ---------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 650 ---------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
++++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 338 ~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~ 416 (543)
T 1we3_A 338 EDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVT 416 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHH
Confidence 24799999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++.+.++++|+++++|++||+.||++|++|||+|+.+
T Consensus 417 e~~~s~~L~---------------------------------~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~ 463 (543)
T 1we3_A 417 LLRAISAVE---------------------------------ELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSV 463 (543)
T ss_dssp HHHHHHHHH---------------------------------HHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999 66666788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++.| ++.++|||..+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 464 vv~~l~~~h--~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (543)
T 1we3_A 464 IVQQILAET--KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEK 525 (543)
T ss_dssp HHHHHHHCC--SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHhc--CCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999877 35679999999999999999999999999999999999999999999999753
|
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-83 Score=738.36 Aligned_cols=397 Identities=22% Similarity=0.328 Sum_probs=362.3
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 69 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~v 146 (547)
T 1kp8_A 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCS--DSKAIAQV 146 (547)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCC--SHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCC--CHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++++ ++|++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 147 A~iS~~~~------~~i~~liadAv~~V~~---dg-----~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m 210 (547)
T 1kp8_A 147 GTISANSD------ETVGKLIAEAMDKVGK---EG-----VITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETG 210 (547)
T ss_dssp HHHHTTSC------HHHHHHHHHHHHHHCT---TS-----EEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTT
T ss_pred HHHhccch------hHHHHHHHHHHHHhCc---CC-----cEEEE--eCCccccccEEEecEEEecCccccccccCcccC
Confidence 99999866 8999999999999974 22 36666 79999998 999999999999 54 347
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|+++++++ +++++ +.++++++.+.|+||||++++| ++.++++|
T Consensus 211 ~~~lenp~Ill~d~~I-------------s~~~~-----------l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L 261 (547)
T 1kp8_A 211 AVELESPFILLADKKI-------------SNIRE-----------MLPVLEAVAKAGKPLLIIAEDV-----EGEALATL 261 (547)
T ss_dssp BEEEESCEEECEESEE-------------CCGGG-----------THHHHHHHHGGGCCEEEEESEE-----CHHHHHHH
T ss_pred ceEecCceEEEEcCcC-------------CCHHH-----------HHHHHHHHHhcCCCEEEECCCc-----CHHHHHHH
Confidence 8889999999999975 34433 4578999999999999999999 88888888
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
.. .+|++|+ ++++++|+|||++|||+++++ ++++++++||+|+.|++ +.+++++|++|.++
T Consensus 262 ~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 338 (547)
T 1kp8_A 262 VVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEE 338 (547)
T ss_dssp HHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCH
T ss_pred HhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCH
Confidence 85 6789998 778999999999999999996 99999999999999986 57899999998753
Q ss_pred ----------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 651 ----------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 651 ----------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
+++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 339 ~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~ 417 (547)
T 1kp8_A 339 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVA 417 (547)
T ss_dssp HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHH
Confidence 3789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++. .++++|+++++|++||+.||++|++|||+|+.+
T Consensus 418 e~~~s~~L~---------------------------------~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~ 463 (547)
T 1kp8_A 418 LIRVASKLA---------------------------------DLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSV 463 (547)
T ss_dssp HHHHHHHTT---------------------------------TCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998 5554 678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++. +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 464 vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 523 (547)
T 1kp8_A 464 VANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523 (547)
T ss_dssp HHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHhc----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecC
Confidence 99999863 4679999999999999999999999999999999999999999999999753
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-84 Score=745.91 Aligned_cols=398 Identities=20% Similarity=0.299 Sum_probs=334.7
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 70 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~v 147 (545)
T 1iok_A 70 GAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVN--DSSEVAQV 147 (545)
T ss_dssp HHHHHHHHHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCC--STTTTTHH
T ss_pred HHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 77899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++++ ++|++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 148 a~iS~~~~------~~i~~li~dAv~~V~~---~g-----~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m 211 (545)
T 1iok_A 148 GTISANGE------SFIGQQIAEAMQRVGN---EG-----VITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKM 211 (545)
T ss_dssp HHHTTTTC------HHHHHHHHHHHHHHCT---TS-----CCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSS
T ss_pred HHhhcCCc------hhHHHHHHHHHHHhcc---CC-----eEEEE--eCCccccceEEEecEEEecCccccccccCcccC
Confidence 99999865 8999999999999974 23 35555 69999998 999999999999 53 358
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|++++++++. +++ +.++++++.+.|++|||++++| ++.++++|
T Consensus 212 ~~~~en~~Ill~d~~I~~-------------~~~-----------l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L 262 (545)
T 1iok_A 212 IAELEDAYILLHEKKLSS-------------LQP-----------MVPLLESVIQSQKPLLIVAEDV-----EGEALATL 262 (545)
T ss_dssp CEEEEEEEEEECSSCBCC-------------CCC----------------------CCCCEEEESCB-----C-------
T ss_pred ceeecCCeEEEEcCCcCC-------------HHH-----------HHHHHHHHHhcCCCEEEECCCc-----CHHHHHHH
Confidence 888999999999998642 222 4577899999999999999999 77777776
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN- 649 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~- 649 (841)
.. .+|++|+ ++++++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 263 ~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 339 (545)
T 1iok_A 263 VVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEK 339 (545)
T ss_dssp ----------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCH
T ss_pred HHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCH
Confidence 65 6789988 778999999999999999996 99999999999999986 5689999999874
Q ss_pred ---------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 650 ---------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 650 ---------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
++++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 340 ~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~ 418 (545)
T 1iok_A 340 AEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVA 418 (545)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHH
Confidence 24789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++. .++++|+++++|++||+.||++|++|||+|+.+
T Consensus 419 e~~~s~~L~---------------------------------~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~ 464 (545)
T 1iok_A 419 LVQGAKVLE---------------------------------GLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAV 464 (545)
T ss_dssp HHHHGGGGG---------------------------------SCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998 5555 678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++.| ++++|||..+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 465 vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 525 (545)
T 1iok_A 465 VAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK 525 (545)
T ss_dssp HHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 999999755 4679999999999999999999999999999999999999999999999763
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-83 Score=731.36 Aligned_cols=395 Identities=22% Similarity=0.295 Sum_probs=344.0
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHh
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSA 435 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia 435 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++ +++.|.++|
T Consensus 70 Akll~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~--~~e~L~~vA 147 (546)
T 3rtk_A 70 AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE--TKEQIAATA 147 (546)
T ss_dssp HHHHHHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--ChHHHHhHe
Confidence 457889999999999999999999999999999999999999999999999999999999999999988 788999999
Q ss_pred hhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCc
Q psy8873 436 ATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPK 508 (841)
Q Consensus 436 ~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~ 508 (841)
++++++ +++++++++|+.++++ ++ .|+|++.. +...||++++|++|+++| ++ +.||+
T Consensus 148 ~iS~~~-------~~i~~liadAv~~V~~---dg-----vI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~ 211 (546)
T 3rtk_A 148 AISAGD-------QSIGDLIAEAMDKVGN---EG-----VITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEA 211 (546)
T ss_dssp HHHHTC-------HHHHHHHHHHHHHSCT---TS-----EEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBE
T ss_pred EEeCCc-------hHHHHHHHHHHHHhcc---CC-----ceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCee
Confidence 999883 6899999999999975 23 47777644 455799999999999998 44 36899
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||+|+++++.+ +++++ +.++++++.+.|+||||++++| ++.++++|..
T Consensus 212 ~len~kIll~d~kI-------------s~~~~-----------l~~~le~I~~~g~~lvIi~~~I-----~~~Al~~L~~ 262 (546)
T 3rtk_A 212 VLEDPYILLVSSKV-------------STVKD-----------LLPLLEKVIGAGKPLLIIAEDV-----EGEALSTLVV 262 (546)
T ss_dssp EEESCEEEEBSSEE-------------CCSTT-----------THHHHHHHHTTTCCEEEEESEE-----CHHHHHHHHH
T ss_pred EecccEEEEECCcc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCC-----CHHHHHHHHH
Confidence 99999999999864 44433 4567899999999999999999 7888877774
Q ss_pred ------cCcEEEecC-----ChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC--
Q psy8873 589 ------IKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP-- 650 (841)
Q Consensus 589 ------~~I~~v~~v-----~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-- 650 (841)
.++++|+.+ ++++|+|||++|||++++ +++++++++||+|+.|+ ++.+++++|++|.++
T Consensus 263 n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~ 339 (546)
T 3rtk_A 263 NKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDA 339 (546)
T ss_dssp HHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHH
T ss_pred hCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHH
Confidence 457888755 488999999999999999 58999999999999998 588999999998753
Q ss_pred --------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHH
Q psy8873 651 --------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 698 (841)
Q Consensus 651 --------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~ 698 (841)
+++|||+|||+|+.+++|++|+++||++++|+++++| +|||||++|+
T Consensus 340 i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~ 418 (546)
T 3rtk_A 340 IAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLL 418 (546)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHH
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHH
Confidence 3589999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q psy8873 699 ELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 778 (841)
Q Consensus 699 ~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~ 778 (841)
+++.+|+ +++ .++++|+++++|++||+.||++|++|||+|+.+++
T Consensus 419 ~~s~~L~---------------------------------~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv 463 (546)
T 3rtk_A 419 QAAPTLD---------------------------------ELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVA 463 (546)
T ss_dssp TTGGGST---------------------------------TSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHH---------------------------------Hhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999998 555 68899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 779 TELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 779 ~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.+|++. ...+|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+.+
T Consensus 464 ~~l~~~----~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~ 521 (546)
T 3rtk_A 464 EKVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADK 521 (546)
T ss_dssp HHHHHS----CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHhh----cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999873 2348999999999999999999999999999999999999999999999864
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-63 Score=568.13 Aligned_cols=272 Identities=33% Similarity=0.606 Sum_probs=240.7
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEe
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPI 169 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i 169 (841)
+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+++
T Consensus 210 i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 284 (500)
T 3aq1_B 210 ITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG-----IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATII 284 (500)
T ss_dssp ---------------CHHHHHHHHHHTTCCSEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCB
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCC-----cCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEe
Confidence 56677888999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy8873 170 ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGG 249 (841)
Q Consensus 170 ~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgG 249 (841)
++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++|||||
T Consensus 285 s~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGG 363 (500)
T 3aq1_B 285 QDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363 (500)
T ss_dssp SCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTC-CCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTT
T ss_pred cccccCCHhHCCCceEEEEEEecCeEEEEEECCCCC-ceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCc
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccc
Q psy8873 250 APEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 250 a~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~ 329 (841)
++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||++.
T Consensus 364 a~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~ 443 (500)
T 3aq1_B 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWEN 443 (500)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTT
T ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhc
Confidence 99999999999999889999999999999999999999999999999999999999998777789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd 367 (841)
|||||+.||++++++|+++|+++|++|++|...+....
T Consensus 444 gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~ 481 (500)
T 3aq1_B 444 DVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQ 481 (500)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 99999999999999999999999999999988765443
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-57 Score=522.03 Aligned_cols=276 Identities=73% Similarity=1.140 Sum_probs=264.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++.+++++|.+.|+||||++++|..+.|+++|++||.++||++++++++++|+|||++|
T Consensus 240 ~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~t 319 (518)
T 3iyg_D 240 DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTI 319 (518)
T ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999996555445599999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCC-ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGN-SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~-~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+|++|++.++++ ++|++|+||++.+++|||+|||+|+.+++|+||++|||+|++|++++||+
T Consensus 320 Ga~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~ 399 (518)
T 3iyg_D 320 GTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA 399 (518)
T ss_pred CCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 89999999987458999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~ 323 (841)
+|||||++|++++.+|++|+.+.++++|+++++|++||+.|||+||+|||+||.+++.+|++.|.+++.++|||+.+|.+
T Consensus 400 iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~ 479 (518)
T 3iyg_D 400 LIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGI 479 (518)
T ss_pred EeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998777789999999999
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
.||++.|||||+.||++++++|+++|+++|++|++|+
T Consensus 480 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 516 (518)
T 3iyg_D 480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516 (518)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEe
Confidence 9999999999999999999999999999999999985
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-57 Score=520.52 Aligned_cols=271 Identities=27% Similarity=0.478 Sum_probs=261.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.++++++++.+.++|++++++++++|++.|+||||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 243 ~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~-----I~d~al~~L~~~gI~av~~v~k~~leria~~t 317 (529)
T 3iyg_A 243 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGG-----IDDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS 317 (529)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----CCHHHHHHHHHcCCceeccCCHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccC------CCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHFL------PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l~------~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||++++++++++ +++||+|+.|+++++|+++|++|+||+.+ ++|||+|||+|+.+|+|+||++|||++++|++
T Consensus 318 Ga~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~ 396 (529)
T 3iyg_A 318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR-TSASVILRGANDFMCDEMERSLHDALCVVKRV 396 (529)
T ss_pred CCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC-ceEEEEECCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987654 67899999999999999999999999986 79999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE------- 311 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~------- 311 (841)
++||++|||||++||+++.+|++|+.+.+|++|+++++|++|||+||++||+|||+|+.+++.+|++.|.+++
T Consensus 397 v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~ 476 (529)
T 3iyg_A 397 LESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKN 476 (529)
T ss_pred hhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred -cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 312 -TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 312 -~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.++|+|+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|..
T Consensus 477 ~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 527 (529)
T 3iyg_A 477 LKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 527 (529)
T ss_pred CceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 67999999999999999999999999999999999999999999999864
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=515.12 Aligned_cols=273 Identities=26% Similarity=0.467 Sum_probs=264.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++.+++++|++++++++++|++.|+||||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 240 ~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~-----I~~~al~~L~~~~I~av~~~~~~~le~ia~~t 314 (513)
T 3iyg_B 240 GSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQL-----IYNYPEQLFGAAGVMAIEHADFVGVERLALVT 314 (513)
T ss_pred CCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCC-----ccHHHHHHHHHcCceEEecCCHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++.+|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++|+++
T Consensus 315 Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~i 393 (513)
T 3iyg_B 315 GGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRT 393 (513)
T ss_pred CCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999874 79999999999999999999999999999999999889
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.
T Consensus 394 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 473 (513)
T 3iyg_B 394 VYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIG 473 (513)
T ss_pred EeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988778899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||++++++|+++|+++|++|++|+..+
T Consensus 474 d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 512 (513)
T 3iyg_B 474 DMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512 (513)
T ss_pred chHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999997643
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=515.14 Aligned_cols=270 Identities=27% Similarity=0.486 Sum_probs=262.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++.+++++|.+.|+||||++++ |++++++||.++||++++++++++|+|||++|
T Consensus 243 ~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~-----I~dla~~~l~~~gI~~v~~~~k~~leria~~t 317 (515)
T 3iyg_H 243 NAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLP-----IGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 317 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCc-----ccHHHHHHHHHcCCcccccccHHHHHHHHHHh
Confidence 3466899999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|++.++|+++|++|+||+++ .+|||+|||+|+.+++|+||++|||||++|++++|+++
T Consensus 318 Ga~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~i 396 (515)
T 3iyg_H 318 GGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSV 396 (515)
T ss_pred CCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC-ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 99999999999999999999999999999999999999986 79999999999999999999999999999999999889
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|++++++.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.
T Consensus 397 VpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 476 (515)
T 3iyg_H 397 VAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIA 476 (515)
T ss_pred ecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 477 dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~ 512 (515)
T 3iyg_H 477 DNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 512 (515)
T ss_pred ccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999985
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=514.73 Aligned_cols=270 Identities=30% Similarity=0.516 Sum_probs=261.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|.+.|++|||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 241 ~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~-----I~~~al~~L~~~~I~av~~~~k~~leria~~t 315 (515)
T 3iyg_G 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANITAIRRVRKTDNNRIARAC 315 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCc-----cCHHHHHHHHHCCceeeccCCHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+ |+.|++.++|+++|++|+||+++ .+|||+|||+|+.+|+|+||++||||+++|++++|++
T Consensus 316 Ga~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ 394 (515)
T 3iyg_G 316 GARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQ 394 (515)
T ss_pred CCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCC-CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999 99999999999999999999986 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~ 322 (841)
+|||||++||+++.+|++++++.+|++|+++++|++|||+||||||+|||+||.+++.+|++.|.++ +.++|+|+.+|.
T Consensus 395 ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~ 474 (515)
T 3iyg_G 395 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGT 474 (515)
T ss_pred EEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999754 457999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 475 ~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 512 (515)
T 3iyg_G 475 LVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512 (515)
T ss_pred ccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999985
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=518.15 Aligned_cols=344 Identities=36% Similarity=0.600 Sum_probs=313.9
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 24 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 103 (553)
T 3ko1_A 24 SRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADG 103 (553)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHHHTCSSSSSTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHhhCCcccccCC
Confidence 667899999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 104 TTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~~~~~~i~~ 183 (553)
T 3ko1_A 104 TKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSCCTTHHHHHH
T ss_pred ceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhHHhhhhHHHHHHH
Confidence
Q ss_pred -----------------------------------h----------hcccccc-------cccc-------------ccc
Q psy8873 73 -----------------------------------Q----------MNVIHPA-------AKMM-------------DHK 87 (841)
Q Consensus 73 -----------------------------------~----------~~~~~p~-------ak~~-------------~~~ 87 (841)
+ -+..||. ++++ +++
T Consensus 184 livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~~ 263 (553)
T 3ko1_A 184 IVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAE 263 (553)
T ss_dssp HHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEecCcccccCcccCce
Confidence 1 1123442 1211 345
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+
T Consensus 264 v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~-----I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ 338 (553)
T 3ko1_A 264 IRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKG-----IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGR 338 (553)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSC-----BCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccC-----hHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCe
Confidence 6889999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|++|++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|++++||++|||
T Consensus 339 ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~-~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpG 417 (553)
T 3ko1_A 339 VVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAG 417 (553)
T ss_dssp EESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS-SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEET
T ss_pred eecccccCChhhcchHHHHHHhhcCcceEEEeccCCCC-ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecC
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-cceeeecCCCccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNI 326 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~-~~~G~d~~~~~~~d~ 326 (841)
||++|++++.+|++|+.+.+|++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++ .++|||+.+|.+.||
T Consensus 418 GGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~ 497 (553)
T 3ko1_A 418 GGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDM 497 (553)
T ss_dssp TTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEES
T ss_pred CceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHH
Confidence 9999999999999999899999999999999999999999999999999999999999998765 689999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccc
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDI 368 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~ 368 (841)
++.|||||+.||+++|++|+++|+++|++|++|...+...+.
T Consensus 498 ~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~ 539 (553)
T 3ko1_A 498 WQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539 (553)
T ss_dssp GGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC-------
T ss_pred HHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccCC
Confidence 999999999999999999999999999999999876654433
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=525.80 Aligned_cols=276 Identities=60% Similarity=0.976 Sum_probs=267.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++.+++++|.+.|+||||++++|.+++++++|+|||.++||++++++++++|+|||++|
T Consensus 249 ~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~t 328 (528)
T 3p9d_D 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGL 328 (528)
T ss_dssp EEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEccc--CCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcC
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ--NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQR 242 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~--~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~ 242 (841)
||+++++++++++++||+|++|++.++++++|++|+||+ +.+++|||+|||+|+.+++|+||++|||+|++|++++||
T Consensus 329 Ga~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~ 408 (528)
T 3p9d_D 329 GCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKER 408 (528)
T ss_dssp TCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSS
T ss_pred CCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998 424799999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCc
Q psy8873 243 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA 322 (841)
Q Consensus 243 ~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~ 322 (841)
++|||||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|||+.+|.
T Consensus 409 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~ 488 (528)
T 3p9d_D 409 GLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSG 488 (528)
T ss_dssp CEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSS
T ss_pred CccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||+++|++|+++|+++|++|++|+
T Consensus 489 ~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 526 (528)
T 3p9d_D 489 TTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526 (528)
T ss_dssp CCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCB
T ss_pred ccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHhee
Confidence 99999999999999999999999999999999999874
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-56 Score=512.64 Aligned_cols=269 Identities=25% Similarity=0.421 Sum_probs=260.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------eEEEecchhhhhHHHHHHHHHhhhheeeeccccch
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN---------VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 155 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~---------lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~ 155 (841)
+.++.+++++++++++++|++++.+.+++|...+++ |||++++ |+++|+|||.++||++++++++.
T Consensus 237 ~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~-----I~d~al~~L~~~gI~~v~~v~~~ 311 (517)
T 3iyg_Z 237 NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKG-----IDPFSLDALAKEGIIALRRAKRR 311 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEeccc-----CCHHHHHHHHHCCCEEEEecCHH
Confidence 678899999999999999999999999999998877 4777787 89999999999999999999999
Q ss_pred hHHHHHHHhCCeEeecccccCCCC-CcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 156 DIEFVCKTLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 156 ~L~~ia~~tGa~~i~~l~~l~~~~-lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
+|+|||++|||+++++++++++++ ||+|+ |++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||+
T Consensus 312 ~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~kr~l~DAl~~ 389 (517)
T 3iyg_Z 312 NMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP-RSVTLLIKGPNKHTLTQIKDAIRDGLRA 389 (517)
T ss_pred HHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc-hhheeeecCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999 99999999999999999986 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcce
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 314 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~ 314 (841)
+|++++||++|||||++||+++.+|++|+.+.+|++|+++++|++||+++|||||+|||+|+.+++.+|++.|.+++.++
T Consensus 390 ~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~ 469 (517)
T 3iyg_Z 390 VKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLV 469 (517)
T ss_pred HHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777889
Q ss_pred eeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 315 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 315 G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 470 G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 515 (517)
T 3iyg_Z 470 GVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515 (517)
T ss_pred EEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999985
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-56 Score=509.88 Aligned_cols=271 Identities=28% Similarity=0.516 Sum_probs=262.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++.++.++|++++++++++|.+.|+|||+++++ |+++++|||.++||++++++++.+|+|||++|
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~-----I~~la~~~l~k~~I~av~~~~~~dle~ia~~t 312 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGR-----VADMALHYANKYNIMLVRLNSKWDLRRLCKTV 312 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCC-----ccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Confidence 3566799999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|++.++|++++++|++|++++++|||+|||+|+.+++|+||++|||||++|++++||++
T Consensus 313 Ga~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 392 (512)
T 3iyg_Q 313 GATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRL 392 (512)
T ss_pred CCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999865689999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC--c
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--A 322 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~--~ 322 (841)
|||||++|++++.+|++++.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+| .
T Consensus 393 VpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~ 472 (512)
T 3iyg_Q 393 VPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPA 472 (512)
T ss_pred ecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999987778899999965 9
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||++++++|+++|+++|++|++|+
T Consensus 473 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~ 510 (512)
T 3iyg_Q 473 VKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 510 (512)
T ss_pred ccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHhee
Confidence 99999999999999999999999999999999999985
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-56 Score=512.37 Aligned_cols=340 Identities=36% Similarity=0.633 Sum_probs=317.4
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 13 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 92 (543)
T 3ruv_A 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDG 92 (543)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred chhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHhhhCCC
Confidence 557799999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 93 TTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~~~~~i~~ 172 (543)
T 3ruv_A 93 TTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAE 172 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHHHTCGGGCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcccccchhHHHHHH
Confidence
Q ss_pred --------------------------------hh----------cccccc-------cccc-------------ccceee
Q psy8873 73 --------------------------------QM----------NVIHPA-------AKMM-------------DHKVVV 90 (841)
Q Consensus 73 --------------------------------~~----------~~~~p~-------ak~~-------------~~~~~i 90 (841)
+. +..||. ++++ ++++.+
T Consensus 173 livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~~~v~I 252 (543)
T 3ruv_A 173 IIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRI 252 (543)
T ss_dssp HHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSCCCEEE
T ss_pred HHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccccccccccCceeEe
Confidence 11 123442 1211 346789
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEee
Q psy8873 91 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIA 170 (841)
Q Consensus 91 ~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~ 170 (841)
++++++++++++|++++++++++|++.|+||||++++ |+++|++||.++||++++++++++|+|||++|||++++
T Consensus 253 ss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~-----I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis 327 (543)
T 3ruv_A 253 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKG-----IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIA 327 (543)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEES
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC-----ccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceec
Confidence 9999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCCh
Q psy8873 171 SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 250 (841)
Q Consensus 171 ~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa 250 (841)
+++++++++||+|++|++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|++++||++|||||+
T Consensus 328 ~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa 406 (543)
T 3ruv_A 328 AIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406 (543)
T ss_dssp CGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTH
T ss_pred ccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcH
Confidence 99999999999999999999999999999999986 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhcc-CCCcceeeecCCCcccccccc
Q psy8873 251 PEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 251 ~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~-~~~~~~G~d~~~~~~~d~~~~ 329 (841)
+|++++.+|++|+.+.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|. +++.++|||+.+|.+.||++.
T Consensus 407 ~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~ 486 (543)
T 3ruv_A 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCEN 486 (543)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTT
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHc
Confidence 9999999999999999999999999999999999999999999999999999999997 666789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
|||||+.||+++|++|+++|+++|++|++|...+.
T Consensus 487 gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~ 521 (543)
T 3ruv_A 487 GVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKL 521 (543)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC--
T ss_pred CCEecHHHHHHHHHHHHHHHHHHHhHHhheecCcc
Confidence 99999999999999999999999999999987654
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=516.39 Aligned_cols=345 Identities=31% Similarity=0.493 Sum_probs=319.5
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-----------------------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK----------------------- 72 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k----------------------- 72 (841)
..|+..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||||
T Consensus 15 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~ 94 (559)
T 3p9d_A 15 LGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREI 94 (559)
T ss_dssp SSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999999999999999999999211
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 95 GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~~~~~~ 174 (559)
T 3p9d_A 95 GDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSD 174 (559)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGGGTTHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccchhH
Confidence
Q ss_pred -------------------------------------hh-------------cccccc---------cccc---------
Q psy8873 73 -------------------------------------QM-------------NVIHPA---------AKMM--------- 84 (841)
Q Consensus 73 -------------------------------------~~-------------~~~~p~---------ak~~--------- 84 (841)
.+ +..||. ++++
T Consensus 175 ~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le~~ 254 (559)
T 3p9d_A 175 FFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKA 254 (559)
T ss_dssp HHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCSCC
T ss_pred HHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEEecccccc
Confidence 11 112331 1111
Q ss_pred ----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHH
Q psy8873 85 ----DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 160 (841)
Q Consensus 85 ----~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~i 160 (841)
+.++.++++++++.+.++|++++.+++++|++.|+||||++++ |+++|++||.++||++++++++++|+||
T Consensus 255 k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~i 329 (559)
T 3p9d_A 255 RMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKG-----IDDLCLKEFVEAKIMGVRRCKKEDLRRI 329 (559)
T ss_dssp CCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSC-----CCGGGTHHHHHTTCEEESSCCHHHHHHH
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCC-----CCHHHHHHHHHcCCceEccCCHHHHHHH
Confidence 3466788999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHHhCCeEeecc------cccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 161 CKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 161 a~~tGa~~i~~l------~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
|++|||++++++ +++++++||+|++|+++++++++|++|+||+++ ++|||+|||+|+.+++|+||++|||||+
T Consensus 330 a~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAL~~ 408 (559)
T 3p9d_A 330 ARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH-SSSSIILRGANDYSLDEMERSLHDSLSV 408 (559)
T ss_dssp HHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSS-CCCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCC-CEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998 789999999999999999999999999999975 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCc--
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET-- 312 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~-- 312 (841)
+|++++||++|||||++|++++.+|++++.+.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++.
T Consensus 409 ~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~ 488 (559)
T 3p9d_A 409 VKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAK 488 (559)
T ss_dssp HHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred ----------ceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 313 ----------TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 313 ----------~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
++|||+.+|.+.||++.|||||+.||+++|++|+++|+++|++|++|+..++.+
T Consensus 489 ~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~ 552 (559)
T 3p9d_A 489 PEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPP 552 (559)
T ss_dssp ----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCCC
T ss_pred ccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccc
Confidence 799999999999999999999999999999999999999999999998765544
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=507.59 Aligned_cols=338 Identities=38% Similarity=0.617 Sum_probs=315.1
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 4678999999999999999999999999999999999999999999999999111
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~ 162 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQ 162 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHH
Confidence
Q ss_pred ------------------------------------hhc----------ccccc-------cccc-------------cc
Q psy8873 73 ------------------------------------QMN----------VIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ------------------------------------~~~----------~~~p~-------ak~~-------------~~ 86 (841)
+.+ ..||. +++. ++
T Consensus 163 l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~ 242 (515)
T 3iyg_E 163 MAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242 (515)
T ss_pred HHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccccccc
Confidence 221 23442 1211 25
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.++++++++++.++|++++.+++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||
T Consensus 243 ~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~-----I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa 317 (515)
T 3iyg_E 243 KLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWG-----FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGG 317 (515)
T ss_pred eeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCC-----CCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCC
Confidence 67789999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
+++++++++++++||+|++|+++++|+ +++++|+||+++ .+|||+|||+|+.+++|+||++||||+++|++++||++
T Consensus 318 ~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 396 (515)
T 3iyg_E 318 RIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRV 396 (515)
T ss_pred EEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC-ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999987 899999999986 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC-CCcceeeecCCCcc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAI 323 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~-~~~~~G~d~~~~~~ 323 (841)
|||||++|++++.+|++|+.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+ ++.++|||+.+|.+
T Consensus 397 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~ 476 (515)
T 3iyg_E 397 VYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGT 476 (515)
T ss_pred CCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 45689999999999
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 477 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 477 NDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 99999999999999999999999999999999999853
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=511.41 Aligned_cols=341 Identities=38% Similarity=0.649 Sum_probs=315.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 16 ~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 95 (545)
T 1a6d_A 16 QREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDG 95 (545)
T ss_dssp -CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTH
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEECCC
Confidence 678899999999999999999999999999999999999999999999999322
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 96 TTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~~~~~~~l~~va~tsl~sKi~~~~~~~i~~li 175 (545)
T 1a6d_A 96 TTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLV 175 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHTTTSSCCSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence
Q ss_pred -------------------------------------------hhcccccc-------cccc-------------cccee
Q psy8873 73 -------------------------------------------QMNVIHPA-------AKMM-------------DHKVV 89 (841)
Q Consensus 73 -------------------------------------------~~~~~~p~-------ak~~-------------~~~~~ 89 (841)
.-++.||. ++++ +.++.
T Consensus 176 vdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~ 255 (545)
T 1a6d_A 176 VKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQ 255 (545)
T ss_dssp HHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEE
T ss_pred HHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEE
Confidence 11224442 1211 45778
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEe
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPI 169 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i 169 (841)
+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+++
T Consensus 256 i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 330 (545)
T 1a6d_A 256 ISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIV 330 (545)
T ss_dssp ECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC-----BCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEE
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCC-----ccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeee
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy8873 170 ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGG 249 (841)
Q Consensus 170 ~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgG 249 (841)
++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++|||||
T Consensus 331 s~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGG 409 (545)
T 1a6d_A 331 TDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGG 409 (545)
T ss_dssp SSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCS-SCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTT
T ss_pred cccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcC
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccc
Q psy8873 250 APEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 250 a~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~ 329 (841)
++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||++.
T Consensus 410 a~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~ 489 (545)
T 1a6d_A 410 AVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAK 489 (545)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhc
Confidence 99999999999999889999999999999999999999999999999999999999998777789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
|||||+.||++++++|+++|+++|++|++|...+..
T Consensus 490 gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 525 (545)
T 1a6d_A 490 GVVDPLRVKTHALESAVEVATMILRIDDVIASKKST 525 (545)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999886654
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-56 Score=512.08 Aligned_cols=342 Identities=36% Similarity=0.627 Sum_probs=319.4
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 16 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 95 (548)
T 1q3q_A 16 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGD 95 (548)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSS
T ss_pred cceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECC
Confidence 4678899999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 96 GTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~ 175 (548)
T 1q3q_A 96 GTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLA 175 (548)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTTGGGHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhccccccchHHHH
Confidence
Q ss_pred ----------------------------------------------hhcccccc-------cccc-------------cc
Q psy8873 73 ----------------------------------------------QMNVIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ----------------------------------------------~~~~~~p~-------ak~~-------------~~ 86 (841)
.-++.||. ++++ +.
T Consensus 176 ~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 255 (548)
T 1q3q_A 176 KLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255 (548)
T ss_dssp HHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCC
T ss_pred HHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCc
Confidence 11223442 1211 45
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++.+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||
T Consensus 256 ~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa 330 (548)
T 1q3q_A 256 KINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 330 (548)
T ss_dssp CEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCC
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCC-----cCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCC
Confidence 77899999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
+++++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++||
T Consensus 331 ~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivp 409 (548)
T 1q3q_A 331 KIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLP 409 (548)
T ss_dssp CCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred eEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-CeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999999999999999999999999999999975 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~ 326 (841)
|||++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||
T Consensus 410 GGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~ 489 (548)
T 1q3q_A 410 AGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADM 489 (548)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEET
T ss_pred CCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccch
Confidence 99999999999999999889999999999999999999999999999999999999999997666689999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
++.|||||+.||++++++|+++|+++|++|++|...+..
T Consensus 490 ~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~ 528 (548)
T 1q3q_A 490 LEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528 (548)
T ss_dssp TTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC--
T ss_pred hhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999876544
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=510.94 Aligned_cols=340 Identities=37% Similarity=0.644 Sum_probs=312.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 15 ~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 94 (543)
T 1a6d_B 15 KRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDG 94 (543)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHHhcCCEECCC
Confidence 578899999999999999999999999999999999999999999999999332
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 95 TTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~~~~~~~i~~ 174 (543)
T 1a6d_B 95 TTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAE 174 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGGGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhccccccccHHHHHH
Confidence
Q ss_pred ---------------------------------------------hhcccccc-------cccc-------------ccc
Q psy8873 73 ---------------------------------------------QMNVIHPA-------AKMM-------------DHK 87 (841)
Q Consensus 73 ---------------------------------------------~~~~~~p~-------ak~~-------------~~~ 87 (841)
.-++.||. ++++ +.+
T Consensus 175 livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~ 254 (543)
T 1a6d_B 175 ISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTN 254 (543)
T ss_dssp HHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEE
T ss_pred HHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccCCce
Confidence 11223442 1211 356
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.+++++++++++++|++++.+++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+
T Consensus 255 v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~ 329 (543)
T 1a6d_B 255 LRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS 329 (543)
T ss_dssp ECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCC-----cCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCc
Confidence 7789999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|+.|+++++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|+++++|++|||
T Consensus 330 iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpG 408 (543)
T 1a6d_B 330 IVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAG 408 (543)
T ss_dssp EESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS-SCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEET
T ss_pred eecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence 99999999999999999999999999999999999975 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||+
T Consensus 409 GGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~ 488 (543)
T 1a6d_B 409 GGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMV 488 (543)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETT
T ss_pred ccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchh
Confidence 99999999999999998899999999999999999999999999999999999999999987777899999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+.|||||+.||++++++|+++|+++|++|++|...+.
T Consensus 489 ~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~ 525 (543)
T 1a6d_B 489 KNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSS 525 (543)
T ss_dssp TTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC----
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999987654
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-56 Score=514.50 Aligned_cols=342 Identities=29% Similarity=0.477 Sum_probs=318.1
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhccccccccccccc-CCCceEEeccHHHHHh------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQA-SNGEVTITNDGATILK------------------------ 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~-~~g~~~itnDg~ti~k------------------------ 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++ ++|+|+|||||+||+|
T Consensus 10 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~~G 89 (527)
T 3p9d_B 10 VTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVG 89 (527)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhhhC
Confidence 477899999999999999999999999999999999999 8999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 90 DGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~ 169 (527)
T 3p9d_B 90 DGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQD 169 (527)
T ss_dssp SCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGG
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccccCcccch
Confidence
Q ss_pred ---------------------------------------------hhcccccc------ccc--------------cccc
Q psy8873 73 ---------------------------------------------QMNVIHPA------AKM--------------MDHK 87 (841)
Q Consensus 73 ---------------------------------------------~~~~~~p~------ak~--------------~~~~ 87 (841)
.-+..||. +++ .+.+
T Consensus 170 ~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll~~~le~~k~~~~~~~ 249 (527)
T 3p9d_B 170 KDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTK 249 (527)
T ss_dssp HHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEECSCSSCCCCSSCCCB
T ss_pred HHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEeccccccccccccCce
Confidence 11123331 111 2456
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.++++++++.+.++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++.+|+|+|++|||+
T Consensus 250 v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~-----I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~ 324 (527)
T 3p9d_B 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQL-----IYDYPEQLFTDLGINSIEHADFEGVERLALVTGGE 324 (527)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCC-----CTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCC
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----CCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCE
Confidence 6789999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|+.|++++++++++++|+||+.+ ++|||+|||+|+.+++|+||++|||||++|++++||++|||
T Consensus 325 iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpG 403 (527)
T 3p9d_B 325 VVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLG 403 (527)
T ss_dssp CCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCS-CCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEET
T ss_pred EecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCC-CEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 99999999999999999999999999999999999975 79999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
||++|++++.+|++++.+.+|++|+++++|++||+.||||||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||+
T Consensus 404 GGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~ 483 (527)
T 3p9d_B 404 GGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMR 483 (527)
T ss_dssp TTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHH
T ss_pred CcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchH
Confidence 99999999999999998899999999999999999999999999999999999999999987777899999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.|||||++||+++|++|+++|+++|++|++|...++.
T Consensus 484 ~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~ 521 (527)
T 3p9d_B 484 QLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRT 521 (527)
T ss_dssp HHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred hccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 99999999999999999999999999999999876654
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=511.39 Aligned_cols=275 Identities=30% Similarity=0.513 Sum_probs=265.0
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
+++.+++++++++++++|++++.+++++|++.|++||+++++ |++++++||.++||++++++++++|+|||++||
T Consensus 257 ~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~-----I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tG 331 (550)
T 3p9d_G 257 AEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLP-----IGDLATQFFADRNIFCAGRVSADDMNRVIQAVG 331 (550)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSC-----CCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTC
T ss_pred ceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----ccHHHHHHHHHcCCccccCcCHHHHHHHHHHhC
Confidence 456789999999999999999999999999999999999998 799999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
|+++++++++++++||+|+.|+++++++++|++|+||+++ ++|||+|||+|+.+|+|+||++|||||++|++++||++|
T Consensus 332 a~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iV 410 (550)
T 3p9d_G 332 GSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA-KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIV 410 (550)
T ss_dssp CCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-CCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred CceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-ceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999975 799999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++|++++.+|++|+++.++++|+++++|++||++||++||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.|
T Consensus 411 pGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~d 490 (550)
T 3p9d_G 411 AGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGD 490 (550)
T ss_dssp ETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCC
T ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999777778999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
|++.|||||+.||+++|++|+++|+++|++|++|...+..+
T Consensus 491 m~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~ 531 (550)
T 3p9d_G 491 NFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSES 531 (550)
T ss_dssp HHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC-
T ss_pred hHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCccc
Confidence 99999999999999999999999999999999998766544
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-56 Score=512.39 Aligned_cols=274 Identities=28% Similarity=0.489 Sum_probs=259.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|++.|++|||++++ |+++|++||.++||++++++++++|+|||++|
T Consensus 258 ~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~-----I~d~Al~~L~k~~I~av~~~~k~~le~ia~~T 332 (590)
T 3p9d_C 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLKGGCSVLRRVKKSDNNRIARVT 332 (590)
T ss_dssp TEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSC-----CCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCC-----cCHHHHHHHHhccceeeccCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCC-------------------------------------
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPG------------------------------------- 206 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~------------------------------------- 206 (841)
||+++++++++++++||+ |++|++..+++++|++|+||+++.
T Consensus 333 Ga~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~ 412 (590)
T 3p9d_C 333 GATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISS 412 (590)
T ss_dssp TCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC------------------------------------------
T ss_pred CCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999987641
Q ss_pred ------------------CeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccc
Q psy8873 207 ------------------RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 268 (841)
Q Consensus 207 ------------------~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~ 268 (841)
++|||+|||+|+.+++|+||++||||+++|++++|+++|||||++|++++.+|.+|+++.++
T Consensus 413 ~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g 492 (590)
T 3p9d_C 413 SGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEG 492 (590)
T ss_dssp ---------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCS
T ss_pred HHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCCh
Confidence 23999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHH
Q psy8873 269 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348 (841)
Q Consensus 269 ~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~ 348 (841)
++|+|+++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||++.|||||+.||+++|++|+++
T Consensus 493 ~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~ 572 (590)
T 3p9d_C 493 IQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIES 572 (590)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987778899999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhhh
Q psy8873 349 VRSILKIDDILVELS 363 (841)
Q Consensus 349 a~~il~i~~ii~~~a 363 (841)
|+++|++|++|...+
T Consensus 573 a~~iL~id~ii~~~~ 587 (590)
T 3p9d_C 573 ACLLLRVDDIVSGVR 587 (590)
T ss_dssp HHHTTSEEEEECCCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999986543
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=507.94 Aligned_cols=270 Identities=34% Similarity=0.574 Sum_probs=260.4
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
+.+.++++++++.+.++|++++.+++++|++.|+||||++++ |+++|++||.++||++++++++++|+|||++||
T Consensus 285 ~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~-----I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TG 359 (562)
T 3p9d_E 285 HKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG-----FDDEANHLLLQNDLPAVRWVGGQELEHIAISTN 359 (562)
T ss_dssp CCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSS-----CCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHC
T ss_pred ceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCC-----CCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhC
Confidence 447789999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
|+++++++++++++||+|++|+++++|+ +++++|+||+++ ++|||+|||+|+.+++|+||++||||+++|++++||+
T Consensus 360 a~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~ 438 (562)
T 3p9d_E 360 GRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSR 438 (562)
T ss_dssp CCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-SCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCC
T ss_pred CEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999985 899999999986 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC-CCcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~-~~~~~G~d~~~~~ 322 (841)
+|||||++|++++.+|++++.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+ ++.++|+|+.+|.
T Consensus 439 iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~ 518 (562)
T 3p9d_E 439 VVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYG 518 (562)
T ss_dssp EEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTB
T ss_pred cCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 4468999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
+.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 519 ~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 557 (562)
T 3p9d_E 519 SNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIIS 557 (562)
T ss_dssp CCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred ccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999864
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=512.37 Aligned_cols=275 Identities=28% Similarity=0.474 Sum_probs=253.5
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|++.|+||||++++ |+++|++||.++||++++++++.+|+|||++|
T Consensus 262 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~-----I~~~al~~L~~~gI~av~~v~~~~leria~~t 336 (568)
T 3p9d_H 262 KGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG-----VGELALHYLNRYGILVLKVPSKFELRRLCRVC 336 (568)
T ss_dssp SCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSC-----CCHHHHHHHHHHTCEEECCCCHHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCC-----cChHHHHHHHHCCeEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccC-CCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHh--c
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK--Q 241 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~-~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~--~ 241 (841)
||+++++++++++++||+|++|++.++|+++|++|+||+. .+++|||+|||+|+.+|+|+||++||||+++|++++ |
T Consensus 337 Ga~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d 416 (568)
T 3p9d_H 337 GATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSG 416 (568)
T ss_dssp SCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999983 348999999999999999999999999999999999 8
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC--------CCcc
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GETT 313 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~--------~~~~ 313 (841)
+++|||||++||+++.+|++|+.+.+|++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+ ++.+
T Consensus 417 ~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~ 496 (568)
T 3p9d_H 417 GKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLY 496 (568)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSS
T ss_pred CeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999975 5668
Q ss_pred eeeecCCCc---cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 314 TGINVRKGA---ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 314 ~G~d~~~~~---~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+|||+.+|+ +.||++.|||||+.||+++|++|+++|+++|++|++|+..+.
T Consensus 497 ~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~ 550 (568)
T 3p9d_H 497 KGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKA 550 (568)
T ss_dssp SCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC------------
T ss_pred eeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Confidence 999999997 999999999999999999999999999999999999987543
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=500.45 Aligned_cols=338 Identities=24% Similarity=0.382 Sum_probs=310.7
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
.+..+|.+|+.+||.||+.||++|||||||+||||||++++|+|+|||||+||||
T Consensus 10 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GD 89 (546)
T 3p9d_F 10 AESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGD 89 (546)
T ss_dssp EEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence 3667899999999999999999999999999999999999999999999999222
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 90 GTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~ 169 (546)
T 3p9d_F 90 GTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEV 169 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSS
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHH
Confidence
Q ss_pred ------------------------------------------hh----cccccc-------cccc-------------cc
Q psy8873 73 ------------------------------------------QM----NVIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ------------------------------------------~~----~~~~p~-------ak~~-------------~~ 86 (841)
-+ ...||. ++++ ++
T Consensus 170 la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~~~ 249 (546)
T 3p9d_F 170 LTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNS 249 (546)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSSCB
T ss_pred HHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCcccccccccCc
Confidence 11 123442 1211 45
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhC---------C-CeEEEecchhhhhHHHHHHHHHhhhheeeeccccchh
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAG---------C-NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERED 156 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~---------~-~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~ 156 (841)
++.++++++++.++++|++++.+.+++|...+ + +|||++++ |+++|+|||.++||++++++++.+
T Consensus 250 ~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~-----I~~~Al~~L~~~gI~~vr~v~~~~ 324 (546)
T 3p9d_F 250 GFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKG-----IDPMSLDVFAKHNILALRRAKRRN 324 (546)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSC-----CCHHHHHHHTTTTCEEECCCCHHH
T ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCc-----CcHHHHHHHHHCCCeeEecCCHHH
Confidence 78889999999999999999999999998754 3 37888887 899999999999999999999999
Q ss_pred HHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHH
Q psy8873 157 IEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVR 236 (841)
Q Consensus 157 L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~ 236 (841)
|+|||++|||+++++++++++++||+|++|+++.+|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|
T Consensus 325 leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAl~~~r 403 (546)
T 3p9d_F 325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-KSCTILIKGSTHYALAQTKDAVRDGLRAVA 403 (546)
T ss_dssp HHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-SCEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-ceEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 899999999999999999999999999999
Q ss_pred HHHhcCccccCCChHHHHHHHhhhh---hhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC----
Q psy8873 237 CLVKQRALIAGGGAPEIELSLKLTK---YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ---- 309 (841)
Q Consensus 237 ~~~~~~~vvpGgGa~e~~~~~~L~~---~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~---- 309 (841)
++++||++|||||++|++++.+|++ |+++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+
T Consensus 404 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~ 483 (546)
T 3p9d_F 404 NVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDS 483 (546)
T ss_dssp HHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTS
T ss_pred HHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999 688999999999999999999999999999999999999999999863
Q ss_pred -CCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 310 -GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 310 -~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
++.++|||+.+|.+.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 484 ~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 536 (546)
T 3p9d_F 484 DETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRA 536 (546)
T ss_dssp TTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999999999999999999999864
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=447.11 Aligned_cols=339 Identities=22% Similarity=0.308 Sum_probs=301.1
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
|.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 1 ~~k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q 80 (543)
T 1we3_A 1 MAKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT 80 (543)
T ss_dssp -CEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999999999999999999999999999 988850
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 81 d~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~~~~i~~li 160 (543)
T 1we3_A 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLI 160 (543)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHTCHHHHHHH
T ss_pred heecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcCCHHHHHHH
Confidence
Q ss_pred --------------------------------------cceeecCHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HKVVVSDYSAMDRV------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~~~i~~~~~l~~~------------~~~E~~~i~~~l~~i~ 115 (841)
+++.+++++.+... +.. .+.+.++++++.
T Consensus 161 ~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~-~~~l~~~le~i~ 239 (543)
T 1we3_A 161 ADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSN-VRELLPILEQVA 239 (543)
T ss_dssp HHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCC-HHHHHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCC-HHHHHHHHHHHH
Confidence 01111111111000 011 134678999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ ++++++++
T Consensus 240 ~~g~~lvii~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~ 314 (543)
T 1we3_A 240 QTGKPLLIIAED-----VEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSM 314 (543)
T ss_dssp TTTCCEEEEESC-----BCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGG
T ss_pred hcCCCEEEEcCC-----ccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHH
Confidence 999999999998 78899999887654 5566899999999999999999995 89999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++. ++++++|+||+++ +++|||+|||+|+.+++|+|
T Consensus 315 LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~ 391 (543)
T 1we3_A 315 LGRAERVRIT---KDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKK 391 (543)
T ss_dssp CEEEEEEEEC---SSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHH
T ss_pred CCCceEEEEE---cCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHH
Confidence 9999999764 7999999999753 47899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||||++|+++++| +|||||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 392 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~ 470 (543)
T 1we3_A 392 HRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILA 470 (543)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999888999999999999999999999999999999999999999
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.|. +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.++..
T Consensus 471 ~h~--~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~ 529 (543)
T 1we3_A 471 ETK--NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKK 529 (543)
T ss_dssp CCS--CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC-
T ss_pred hcC--CCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 884 46799999999999999999999999999999999999999999999998766533
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=446.42 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=269.1
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
|.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 2 ~~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~q 81 (545)
T 1iok_A 2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRT 81 (545)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHG
T ss_pred CchhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999 988750
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 d~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~~l 161 (545)
T 1iok_A 82 NDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQ 161 (545)
T ss_dssp GGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcCCchhHHHH
Confidence
Q ss_pred ---------------------------------------cceeecCHHHHHH-H-----------HHHHHHHHHHHHHHH
Q psy8873 86 ---------------------------------------HKVVVSDYSAMDR-V-----------LKEERAYILNIVKQI 114 (841)
Q Consensus 86 ---------------------------------------~~~~i~~~~~l~~-~-----------~~~E~~~i~~~l~~i 114 (841)
+++.+++++.+.. + +.. .+.+.++++++
T Consensus 162 i~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~-~~~l~~~le~i 240 (545)
T 1iok_A 162 IAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSS-LQPMVPLLESV 240 (545)
T ss_dssp HHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCC-CCC--------
T ss_pred HHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCC-HHHHHHHHHHH
Confidence 0111111111000 0 000 02356889999
Q ss_pred HHhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCC
Q psy8873 115 KKAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPE 178 (841)
Q Consensus 115 ~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~ 178 (841)
.+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ +++++++
T Consensus 241 ~~~g~~lvIi~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~ 315 (545)
T 1iok_A 241 IQSQKPLLIVAED-----VEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTID 315 (545)
T ss_dssp ---CCCCEEEESC-----BC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CT
T ss_pred HhcCCCEEEECCC-----cCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHH
Confidence 9999999999998 79999999998665 6666999999999999999999996 9999999
Q ss_pred CCcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHH
Q psy8873 179 HLSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEA 224 (841)
Q Consensus 179 ~lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~ 224 (841)
+||+|++|++. ++++++|+||+++ +++|||+|||+|+.+++|+
T Consensus 316 ~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~ 392 (545)
T 1iok_A 316 MLGRAKKVSIN---KDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKER 392 (545)
T ss_dssp TSEEEEEEEEC---SSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHH
T ss_pred HcCcCcEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHH
Confidence 99999999874 6999999999753 4789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q psy8873 225 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 304 (841)
Q Consensus 225 k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~ 304 (841)
||++|||+|++|+++++| +|||||++|++++.+|++++. .++++|+++++|++||+.||++||+|||+|+.+++.+|+
T Consensus 393 kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~ 470 (545)
T 1iok_A 393 KDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVR 470 (545)
T ss_dssp HHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999 999999999999999999977 889999999999999999999999999999999999999
Q ss_pred hhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 305 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 305 ~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.| +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.+..
T Consensus 471 ~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 528 (545)
T 1iok_A 471 ESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEP 528 (545)
T ss_dssp SCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC--
T ss_pred hhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCcc
Confidence 876 3579999999999999999999999999999999999999999999999887654
|
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=440.82 Aligned_cols=335 Identities=19% Similarity=0.293 Sum_probs=297.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 2 ~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd 81 (547)
T 1kp8_A 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81 (547)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhc
Confidence 488999999999999999999999999999999999999999999999999999999999999 988850
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~li 161 (547)
T 1kp8_A 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLI 161 (547)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHH
Confidence
Q ss_pred --------------------------------------cceeecCHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HKVVVSDYSAMDRV------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~~~i~~~~~l~~~------------~~~E~~~i~~~l~~i~ 115 (841)
+++.+++++.+... +.. .+.+.++++++.
T Consensus 162 adAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~-~~~l~~~le~i~ 240 (547)
T 1kp8_A 162 AEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN-IREMLPVLEAVA 240 (547)
T ss_dssp HHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECC-GGGTHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCC-HHHHHHHHHHHH
Confidence 01111111110000 000 134678999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ ++++++++
T Consensus 241 ~~g~~lvIi~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~ 315 (547)
T 1kp8_A 241 KAGKPLLIIAED-----VEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLED 315 (547)
T ss_dssp GGGCCEEEEESE-----ECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTT
T ss_pred hcCCCEEEECCC-----cCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHH
Confidence 999999999998 79999999988765 6666999999999999999999996 99999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|++|++. ++++++|+||+++ +++|||+|||+|+.+++|+|
T Consensus 316 LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~k 392 (547)
T 1kp8_A 316 LGQAKRVVIN---KDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKK 392 (547)
T ss_dssp SEEEEEEEEC---SSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHH
T ss_pred CCceeEEEEc---cceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHH
Confidence 9999999774 7999999999753 36899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||+|++|+++++| +|||||++|++++.+|++++. .++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~ 470 (547)
T 1kp8_A 393 ARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470 (547)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999999 999999999999999999977 8899999999999999999999999999999999999996
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
. +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.++..
T Consensus 471 ~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 527 (547)
T 1kp8_A 471 G----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKND 527 (547)
T ss_dssp S----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred c----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccC
Confidence 4 35799999999999999999999999999999999999999999999998876543
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=440.26 Aligned_cols=335 Identities=21% Similarity=0.306 Sum_probs=227.5
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccc----ccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPA----AKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~----ak~~~------ 85 (841)
|.|++.||++||.+|+.|++.||++|||||||+||||||++++|+|+|||||+||+|+|+++||. |||+.
T Consensus 1 ~~k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~q 80 (546)
T 3rtk_A 1 MAKTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT 80 (546)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHHHHHHTSC
T ss_pred CCceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999999999999999999999999996 77640
Q ss_pred ----------------------------------------------------cceeecCHHHHHHH--------------
Q psy8873 86 ----------------------------------------------------HKVVVSDYSAMDRV-------------- 99 (841)
Q Consensus 86 ----------------------------------------------------~~~~i~~~~~l~~~-------------- 99 (841)
....+++.+.+..+
T Consensus 81 d~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~~~~i~~li 160 (546)
T 3rtk_A 81 DDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLI 160 (546)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCCchHHHHHH
Confidence 00111111111000
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHHH
Q psy8873 100 ----------------------------------------------------------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 100 ----------------------------------------------------------------~~~E~~~i~~~l~~i~ 115 (841)
+. ..+.+.+++++|.
T Consensus 161 adAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs-~~~~l~~~le~I~ 239 (546)
T 3rtk_A 161 AEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS-TVKDLLPLLEKVI 239 (546)
T ss_dssp HHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEEC-CSTTTHHHHHHHH
T ss_pred HHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccC-CHHHHHHHHHHHH
Confidence 00 0033677899999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhh------eee-----eccccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLV-----VKDIEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~-----v~~~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..++ +.+ |++.++++|+|||++|||++++ +++++++++
T Consensus 240 ~~g~~lvIi~~~-----I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~ 314 (546)
T 3rtk_A 240 GAGKPLLIIAED-----VEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSL 314 (546)
T ss_dssp TTTCCEEEEESE-----ECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTT
T ss_pred hcCCCEEEEcCC-----CCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhh
Confidence 999999999998 7889999888654 344 4566788999999999999999 699999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|++|+ ++++++++|+||+++ |++|||+|||+|+.+++|+|
T Consensus 315 LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~e 391 (546)
T 3rtk_A 315 LGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERK 391 (546)
T ss_dssp SEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHH
T ss_pred CCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Confidence 99999987 468999999998763 45899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||||++|+++++| +|||||++|++++.+|++++ .++++|+++++|++||+.||||||+|||+|+.+++.+|++
T Consensus 392 r~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~ 468 (546)
T 3rtk_A 392 HRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN 468 (546)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999999 99999999999999999987 7999999999999999999999999999999999999997
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.+ ..+|||+.+|.+.||++.|||||++||+++|++|+++|+++|++|++|++.+...
T Consensus 469 ~~----~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~ 525 (546)
T 3rtk_A 469 LP----AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKE 525 (546)
T ss_dssp SC----TTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred hc----CCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 52 2389999999999999999999999999999999999999999999999876543
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=283.68 Aligned_cols=173 Identities=20% Similarity=0.397 Sum_probs=149.5
Q ss_pred cccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8873 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN 565 (841)
Q Consensus 486 ~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~ 565 (841)
++||++++|++|++++...+||+.++||||++++|+|++++++++.++.++++++++++.++|++++++++++|++.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999994448999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEE
Q psy8873 566 VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKI 644 (841)
Q Consensus 566 lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~ 644 (841)
|||++++| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|
T Consensus 81 VVl~~k~I-----~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~ 155 (178)
T 1gml_A 81 VVITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFI 155 (178)
T ss_dssp EEEESSCB-----CHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEE
T ss_pred EEEECCcc-----cHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEE
Confidence 99999999 9999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EccCCCCceEEEEEeCCCHH
Q psy8873 645 SGIQNPGRTLTVVVRGSNKL 664 (841)
Q Consensus 645 ~~~~~~~~~~TIllrG~t~~ 664 (841)
++|+++ +.|||+|||++.+
T Consensus 156 ~gc~~~-~~~TIllRG~~~~ 174 (178)
T 1gml_A 156 TDCKDP-KACTILLRGASHH 174 (178)
T ss_dssp EEESST-TSCEEEEEC----
T ss_pred ECCCCC-CEEEEEEECCCcc
Confidence 999987 9999999999864
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=246.63 Aligned_cols=154 Identities=32% Similarity=0.524 Sum_probs=147.9
Q ss_pred EEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecC
Q psy8873 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQK 571 (841)
Q Consensus 492 i~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 571 (841)
++|++|++++...+||+.++||||++++|+|+++++++++++.++++++++.+.++|++++.+++++|++.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 47999999994448999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 572 SILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 572 ~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
+| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++.
T Consensus 81 ~I-----~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 81 GI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp CB-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred cc-----CHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999999875
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=221.14 Aligned_cols=146 Identities=20% Similarity=0.382 Sum_probs=121.3
Q ss_pred HHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhhe
Q psy8873 67 GATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i 146 (841)
....+-+.+++.|..++ +.++.+++++++++++++|++++++++++|++.|+|||+++++ |+++|+|||.++||
T Consensus 28 akI~ll~~~Le~~k~e~-~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~-----I~d~a~~~l~k~gI 101 (178)
T 1gml_A 28 PRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANV 101 (178)
T ss_dssp CCEEEESSCBSCC---------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSC-----BCHHHHHHHHHTTC
T ss_pred ceEEEEecccCCccccC-ccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCc-----ccHHHHHHHHHCCC
Confidence 44555567777777776 8899999999999999999999999999999999999999998 89999999999999
Q ss_pred eeeccccchhHHHHHHHhCCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchh
Q psy8873 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 219 (841)
Q Consensus 147 ~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~ 219 (841)
++++++++++|+|||++|||+++++++++++++||+ |+.|+++++|+++|++|+||+++ .+|||+|||++..
T Consensus 102 ~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~~-~~~TIllRG~~~~ 174 (178)
T 1gml_A 102 TAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRGASHH 174 (178)
T ss_dssp EEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESST-TSCEEEEEC----
T ss_pred EEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCCC-CEEEEEEECCCcc
Confidence 999999999999999999999999999999999999 99999999999999999999985 8999999999875
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-22 Score=194.22 Aligned_cols=134 Identities=30% Similarity=0.471 Sum_probs=123.4
Q ss_pred cHHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhh
Q psy8873 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145 (841)
Q Consensus 66 Dg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~ 145 (841)
|+...+-+++++.|..++ ++++.+++++++++++++|++++++++++|+++|+|||+++++ |+++|+|||.++|
T Consensus 21 nakI~ll~~~Le~~k~e~-~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~-----I~d~a~~~l~k~g 94 (159)
T 1ass_A 21 NAKIALIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEG 94 (159)
T ss_dssp EEEEEEESSCBSCCHHHH-HHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSC-----BCHHHHHHHHHTT
T ss_pred CccEEEEecCcCCccccc-ceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCc-----cCHHHHHHHHHCC
Confidence 355555567777776666 7889999999999999999999999999999999999999998 8999999999999
Q ss_pred eeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCC
Q psy8873 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 146 i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
|++++++++++|+|||++|||++++++++++++.||+|+.|+++++|++++++|+||++.
T Consensus 95 I~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 95 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred CEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999999863
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=125.31 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=111.7
Q ss_pred ceeEEeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8873 489 TELVDGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKK 561 (841)
Q Consensus 489 S~li~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~ 561 (841)
.++++||.|+++|.| +.|.-.++||.|++.+ .+ |++. +.+.++++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitd-----------kK--Is~i-----------~~ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQ-----------DK--ISSL-----------PDLLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBS-----------SE--ECCH-----------HHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEc-----------Cc--cCCH-----------HHHHHHHHHHHH
Confidence 468899999999955 2333445555555443 33 4666 357889999999
Q ss_pred cCCcEEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeee
Q psy8873 562 AGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADL 630 (841)
Q Consensus 562 ~g~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~ 630 (841)
.+.+|+|++.+|++|||..++.|.++ ..+++||+.+. +..|++||.+|||++++. +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 99999999999999999999999999 58999999885 788999999999999984 67888999999999
Q ss_pred EEEEEecCeeEEEEEccCCCCceEEEEEeC-CCHHHHHHHHHHHHH
Q psy8873 631 VEEIPAGNSRFVKISGIQNPGRTLTVVVRG-SNKLVLDEAARSLHD 675 (841)
Q Consensus 631 v~~~~ig~~~~~~~~~~~~~~~~~TIllrG-~t~~~l~e~~r~i~d 675 (841)
|.+. +--|.+++| .+...++++-.-+..
T Consensus 138 v~vt-----------------kd~T~iv~G~g~~~~I~~Rv~qIr~ 166 (194)
T 3m6c_A 138 VVVS-----------------KDDTVIVDGGGTAEAVANRAKHLRA 166 (194)
T ss_dssp EEEC-----------------SSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEc-----------------CCceEEecCCCCHHHHHHHHHHHHH
Confidence 8861 233455544 555666555554443
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=113.81 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=97.0
Q ss_pred eEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Q psy8873 494 GLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 566 (841)
Q Consensus 494 G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~l 566 (841)
||.|+++|.| +.|.-.++||.|++.+-. |++. +.+.++++++.+.+.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i-----------~~llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNV-----------RELLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCH-----------HHHHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCH-----------HHHHHHHHHHHHHCCCE
Confidence 8999999944 344455667776655433 4666 45788999999999999
Q ss_pred EEecCCcccccccHHHHHHHH-hcCcEEEecC-----ChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEE
Q psy8873 567 LLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEE 633 (841)
Q Consensus 567 vi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v-----~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~ 633 (841)
+|++++|++|||..++.|.++ ..+++||+.+ ++..|++||.+||+++++. +++.+.++||+|+++.+
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 134 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE
Confidence 999999999999999999999 6899999988 5888999999999999984 67788899999999986
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=115.92 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=110.2
Q ss_pred EeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8873 493 DGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN 565 (841)
Q Consensus 493 ~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~ 565 (841)
+|+.|+++|.+ +.|.-.++||.|++.+-. |++. +.+.++++++.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i-----------~~ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNI-----------RELLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCH-----------HHHHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCH-----------HHHHHHHHHHHHhCCC
Confidence 59999999944 234445666666666544 3566 4588899999999999
Q ss_pred EEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEE
Q psy8873 566 VLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEI 634 (841)
Q Consensus 566 lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~ 634 (841)
|+|++++|++|||..++.|.++ ..+++||+.+. +..|++||.+|||++++. +++++.++||+|++|.+.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 9999999999999999999999 58999999885 788999999999999984 678889999999998861
Q ss_pred EecCeeEEEEEccCCCCceEEEEEeC-CCHHHHHHHHHHHHH
Q psy8873 635 PAGNSRFVKISGIQNPGRTLTVVVRG-SNKLVLDEAARSLHD 675 (841)
Q Consensus 635 ~ig~~~~~~~~~~~~~~~~~TIllrG-~t~~~l~e~~r~i~d 675 (841)
+--|.++.| .+...++++-.-+..
T Consensus 149 -----------------kd~TtIv~G~G~~~~I~~Rv~qIr~ 173 (201)
T 3osx_A 149 -----------------KDTTTIIDGVGEEGAIAARVTQIRQ 173 (201)
T ss_dssp -----------------SSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred -----------------CCceEEecCCCCHHHHHHHHHHHHH
Confidence 233555544 555666655554443
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=100.68 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+.+|++.+.+.|++|++++++++++..++.+.++ ..++.+++.+ +++.|+|||.+|||++++ +++
T Consensus 40 ~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le 119 (145)
T 1srv_A 40 RELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLE 119 (145)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccc
Confidence 57889999999999999999999999999999999998 4566555555 677899999999999997 578
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+.+.++||+|+++.+. .+.++++.|
T Consensus 120 ~~~~~~LG~a~~v~vt---kd~TtIv~G 144 (145)
T 1srv_A 120 NATLSMLGRAERVRIT---KDETTIVGG 144 (145)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHhHCCccCEEEEc---CCCeEEeCC
Confidence 8899999999888765 667766654
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=97.18 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+++|.+.+.+.||+|++++++++++..++++.++ ..++.+++.+ ++..|+|||.+|||++++ +++
T Consensus 53 ~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le 132 (201)
T 3osx_A 53 RELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELE 132 (201)
T ss_dssp HHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccc
Confidence 57889999999999999999999999999999999998 4666555555 567799999999999997 578
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+++.++||+|+++.+. .+.++++.|
T Consensus 133 ~~~~~~LG~a~~V~vt---kd~TtIv~G 157 (201)
T 3osx_A 133 KATLEDLGQAKRVVIN---KDTTTIIDG 157 (201)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHhhCCCccEEEEc---CCceEEecC
Confidence 8999999999887765 444444443
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-08 Score=95.87 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhh-hheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK-IKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~-~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+.+|.+.+.+.||+|+++++++++++.++.+.++. .++.+++.+ ++..|+|||.+|||++++ +++
T Consensus 46 ~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le 125 (194)
T 3m6c_A 46 PDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLR 125 (194)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred HHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccc
Confidence 578899999999999999999999999999999999984 666555555 577799999999999998 678
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+++.++||+|+++.+. .+.++++.|
T Consensus 126 ~~~~~~LG~a~~v~vt---kd~T~iv~G 150 (194)
T 3m6c_A 126 EVGLEVLGSARRVVVS---KDDTVIVDG 150 (194)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHHHCCCccEEEEc---CCceEEecC
Confidence 8999999999887765 445444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 841 | ||||
| d1q3qa2 | 153 | c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon | 4e-36 | |
| d1q3qa2 | 153 | c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon | 8e-24 | |
| d1a6db2 | 152 | c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon | 9e-35 | |
| d1a6db2 | 152 | c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon | 3e-23 | |
| d1assa_ | 152 | c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo | 7e-34 | |
| d1assa_ | 152 | c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo | 5e-21 | |
| d1gmla_ | 168 | c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc | 2e-32 | |
| d1gmla_ | 168 | c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc | 1e-17 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 1e-27 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 7e-25 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 3e-18 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 3e-10 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 4e-27 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 1e-26 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 5e-20 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 8e-19 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 2e-17 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 5e-16 | |
| d1a6db3 | 107 | d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai | 2e-18 | |
| d1q3qa3 | 107 | d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai | 5e-18 | |
| d1a6da3 | 105 | d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai | 7e-17 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 2e-12 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 2e-12 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 1e-09 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 5e-07 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 1e-06 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 2e-07 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 2e-05 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 4e-05 |
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 131 bits (331), Expect = 4e-36
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYIL 553
G+V ++ + PKRVE AKI LI + KT+ D K+ ++ + L++E +
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 61
Query: 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 613
++V I + G NV+ VQK I DLA H+L K ++ V+ +++ D+E + K +
Sbjct: 62 DMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKI 116
Query: 614 IASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ ++ PE L A++VEE + + G +NP
Sbjct: 117 VTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP 153
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 96.2 bits (239), Expect = 8e-24
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 37 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAK 91
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +
Sbjct: 92 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 151
Query: 204 NP 205
NP
Sbjct: 152 NP 153
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 127 bits (320), Expect = 9e-35
Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYIL 553
G++ ++ + P V+ AKI L+ + K + D + + D S + + L +E +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 613
+V +IK G NV++ QK I D+A H+L + + V+ +++ D++ + K
Sbjct: 61 EMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASI 115
Query: 614 IASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
++++D L +A+ VE++ G ++G +NP
Sbjct: 116 VSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP 152
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 94.3 bits (234), Expect = 3e-23
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 36 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSR 90
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 91 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 150
Query: 204 NP 205
NP
Sbjct: 151 NP 152
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 125 bits (314), Expect = 7e-34
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551
+ G+V ++ + P V+ AKI LI + KT+++ KV +SD S + L +E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611
+V++IKK+G NV+L QK I D+A H+L K + V+ +++ D+E + K
Sbjct: 61 FKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 115
Query: 612 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
+ + LD P L A+ VEE G+ R + G
Sbjct: 116 KIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG 150
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 88.1 bits (218), Expect = 5e-21
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 38 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 92
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 201
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG 150
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Score = 121 bits (304), Expect = 2e-32
Identities = 33/174 (18%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 488 DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547
D+ ++ G++ + + + ++ +I L+ + K + + ++ R+L+
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607
E YI + + I + +V++ +K ISDLA H+L + V ++ + + D + +
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANVTAIRRVRKTDNNRIAR 115
Query: 608 TLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRG 660
R ++ + + + A L+E G+ F I+ ++P + T+++RG
Sbjct: 116 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRG 168
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Score = 78.9 bits (194), Expect = 1e-17
Identities = 29/151 (19%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Query: 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQ 125
I+ + + + ++ R+L+ E YI + + I + +V++ +
Sbjct: 24 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 83
Query: 126 KSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH-LSSAD 184
K I SDLA H+L + V ++ + + D + + R ++ + + + A
Sbjct: 84 KGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAG 138
Query: 185 LVEEIPAGNSRFVKISGIQNPGRTLTVVVRG 215
L+E G+ F I+ ++P + T+++RG
Sbjct: 139 LLEIKKIGDEYFTFITDCKDP-KACTILLRG 168
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 110 bits (275), Expect = 1e-27
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 674 HDALCVVRCLVKQR-ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIE 732
A+ + L+KQ L+ G P + + + ID ++ + GGGA E E
Sbjct: 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAE 140
Query: 733 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 792
L+++L KYA++V G + AFA+ALE+IP TLAENAG++PI+T+ +L+ +G +
Sbjct: 141 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 200
Query: 793 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
G+++ + ++ + VV PL V T A+ + E IL+IDD++
Sbjct: 201 GVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 102 bits (254), Expect = 7e-25
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 209 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 268
T++ +G + V+ R + + + +++ + GGGA E EL+++L KYA++V G
Sbjct: 95 ETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGG 154
Query: 269 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 328
+ AFA+ALE+IP TLAENAG++PI+T+ +L+ +G + G+++ + ++
Sbjct: 155 REQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKA 214
Query: 329 ENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ VV PL V T A+ + E IL+IDD++
Sbjct: 215 KGVVDPLRVKTHALESAVEVATMILRIDDVI 245
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 83.2 bits (205), Expect = 3e-18
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 20 KSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP 79
+ + + + +NI AAKA+ADA+RT+LGP+GMDKM+ S G++ I+NDGATILK+M+V HP
Sbjct: 1 REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHP 60
Query: 80 AAKMMDHKVVVSDYSA 95
AKM+ D +
Sbjct: 61 TAKMIVEVSKAQDTAV 76
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 59.4 bits (143), Expect = 3e-10
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SKAQD GDGTT+ V+++G LL+ AE LL +G+HPT IS+ ++ A + +I+
Sbjct: 64 MIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIID 123
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQAS-LLAPIAVDAVLKVVNPQRDTNVDLKDI 476
E++ L + A L S LA A L+++ N + I
Sbjct: 124 EIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 183
Query: 477 KVIRKLGGTVEDTELVDGLVFT------QKSANVNGPKRVEKAKI 515
+ KL E + G+ K+ V P RV+ +
Sbjct: 184 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHAL 228
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 108 bits (271), Expect = 4e-27
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 668 EAARSLHDALCVVRCLVKQ--RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAG 725
A+ + L++Q + I ++ + A AG
Sbjct: 71 FVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAG 130
Query: 726 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH 785
GGA E++ +L YA + G FA A+E IP LAENAGL+PI + +LR H
Sbjct: 131 GGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEH 190
Query: 786 AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
A+G T GINV G I ++++ V++P+ V AI +TE IL+IDD++
Sbjct: 191 AKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 107 bits (267), Expect = 1e-26
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 243 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 302
A AGGGA E++ +L YA + G FA A+E IP LAENAGL+PI + +
Sbjct: 126 AYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLK 185
Query: 303 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
LR HA+G T GINV G I ++++ V++P+ V AI +TE IL+IDD++
Sbjct: 186 LRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 87.8 bits (217), Expect = 5e-20
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D NI AA A+++++R+SLGPRGMDKM+ S G++ ITNDG TILK+M+V HPAAKMM
Sbjct: 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMM 61
Query: 85 DHKVVVSDYSA 95
D
Sbjct: 62 VEVSKTQDSFV 72
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 84.8 bits (209), Expect = 8e-19
Identities = 43/148 (29%), Positives = 69/148 (46%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++
Sbjct: 8 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQ 67
Query: 78 HPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLA 137
HPAAKMM D A D + K + N+ + ++ A
Sbjct: 68 HPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKA 127
Query: 138 IHFLDKIKVLVVKDIEREDIEFVCKTLN 165
LD+I + V + L+
Sbjct: 128 QEILDEIAIRAVLPAGGAPEIELAIRLD 155
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 80.6 bits (198), Expect = 2e-17
Identities = 49/127 (38%), Positives = 78/127 (61%)
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
+D RA++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENA
Sbjct: 128 QEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENA 187
Query: 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830
GL+ + + ++ + H GI+V +G ++LE+ +++PL V AI ++E I
Sbjct: 188 GLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 247
Query: 831 LKIDDIV 837
L+IDD++
Sbjct: 248 LRIDDVI 254
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 76.4 bits (187), Expect = 5e-16
Identities = 48/120 (40%), Positives = 76/120 (63%)
Query: 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299
RA++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENAGL+ +
Sbjct: 135 AIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEM 194
Query: 300 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD++
Sbjct: 195 LVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 79.1 bits (195), Expect = 2e-18
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGT 485
++ L+K A TSLNSK S LA I+ +AV V + VD +I+V++K GG
Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGA 63
Query: 486 VEDTELVDGLVFTQK-----SANVNGPKRVEKAKIGLI 518
++DT+L++ V + + + + ++
Sbjct: 64 IDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVV 100
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 78.0 bits (192), Expect = 5e-18
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP-QRDTNVDLKDIKVIRK 481
+ D E L+K AATS+ K LLA +AV+AV +V VDL +IK +K
Sbjct: 1 VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKK 60
Query: 482 LGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLI 518
G VE++ELV + + +++ + L
Sbjct: 61 AGEGVEESELVKAVTILIRG---GTEHVIDEVERALE 94
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 74.6 bits (183), Expect = 7e-17
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGT 485
D L K A T+L+ K LA + V AV V + T VD +IKV +K GG+
Sbjct: 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGS 61
Query: 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHK 532
V DT+ + + + V + + L T D K
Sbjct: 62 VNDTQFISAVSILIRG---GTDHVVSEVERALNDAIRVVAITKEDGK 105
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 65.9 bits (160), Expect = 2e-12
Identities = 24/106 (22%), Positives = 41/106 (38%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMN 75
A KD D + +ADA++ +LGP+G + ++ S G TIT DG ++ +++
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 60
Query: 76 VIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 121
+ M V A D + I + V
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAV 106
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 65.6 bits (159), Expect = 2e-12
Identities = 23/106 (21%), Positives = 43/106 (40%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMN 75
A K+ +D R+ + +ADA++ +LGP+G + +I S G IT DG ++ K++
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIE 60
Query: 76 VIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 121
+ M V D + +++ V
Sbjct: 61 LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAV 106
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 57.2 bits (137), Expect = 1e-09
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
R + AVA+A++ +LGPRG + +++ G TIT DG T+ K++ + +
Sbjct: 9 AARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIG 68
Query: 85 DHKVVVSDYSAMD 97
+ D
Sbjct: 69 AQLLKEVASKTND 81
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 49.5 bits (117), Expect = 5e-07
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 222 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQAL 281
+++ A+ ++ L ++ GGG + + + + G +A + +AL
Sbjct: 116 RGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRAL 175
Query: 282 EVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSA 341
E +AENAG +V + G N G +++E +V P V+ SA
Sbjct: 176 EEPARQIAENAGYEG--SVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSA 233
Query: 342 ITLSTETVRSILKIDDILVEL 362
+ + IL + ++ E
Sbjct: 234 LQNAASIGALILTTEAVVAEK 254
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 48.8 bits (115), Expect = 1e-06
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 739 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 798
+ + G +A + +ALE +AENAG +V + G N
Sbjct: 155 ELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEG--SVIVQQILAETKNPRYGFNAAT 212
Query: 799 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
G +++E +V P V+ SA+ + IL + +V
Sbjct: 213 GEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVV 251
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/91 (20%), Positives = 39/91 (42%)
Query: 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
+++ E++K D AGDGTT+ ++A +L+ + + G +P + +KA K E L
Sbjct: 9 ELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETL 68
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVSQQ 447
+ + + L + +
Sbjct: 69 LKGAKIVAGGGVTLLQAAPTLDELKLEGDEA 99
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 44.0 bits (103), Expect = 2e-05
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 229 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 288
V L+K ++AGGG ++ + L + +A ALE +
Sbjct: 59 KAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEG--DEATGANIVKVALEAPLKQI 116
Query: 289 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348
A N+GL P ++RN G+N + G ++L V P+ V+ SA+ +
Sbjct: 117 AFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASI 172
Query: 349 VRSIL 353
L
Sbjct: 173 AGLFL 177
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 806
+A ALE +A N+GL P ++RN G+N + G ++L
Sbjct: 97 DEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLA 152
Query: 807 ENVVQPLLVSTSAITLSTETVRSIL 831
V P+ V+ SA+ + L
Sbjct: 153 AGVADPVKVTRSALQNAASIAGLFL 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 100.0 | |
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 99.97 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.97 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.96 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.96 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.96 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 99.96 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.96 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.87 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.86 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.86 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.85 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.83 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.79 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.76 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 99.48 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 99.47 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 99.39 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.35 | |
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 99.19 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 99.19 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 99.18 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 98.79 | |
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 98.6 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 98.58 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 98.56 | |
| d1sjpa3 | 89 | GroEL, I domain {Mycobacterium tuberculosis, GroEL | 96.64 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 96.16 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 95.84 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 95.76 | |
| d1we3a3 | 86 | GroEL, I domain {Thermus thermophilus [TaxId: 274] | 95.28 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 92.62 |
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=1.7e-41 Score=350.18 Aligned_cols=237 Identities=38% Similarity=0.598 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc-----cceeecCHHHHHH
Q psy8873 24 TDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD-----HKVVVSDYSAMDR 98 (841)
Q Consensus 24 ~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~-----~~~~i~~~~~l~~ 98 (841)
.+++..||++++.++++||+||||+||||||+++.|+|+|||||+||+++++++||+++++. ..-.+.|-.....
T Consensus 1 ~~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~ 80 (243)
T d1a6db1 1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAV 80 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchH
Confidence 37899999999999999999999999999999999999999999999999999999999853 2223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCC
Q psy8873 99 VLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPE 178 (841)
Q Consensus 99 ~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~ 178 (841)
++.. +.+++..+. ...|.++..+
T Consensus 81 vl~~--~ll~~~~~~-i~~G~~p~~I------------------------------------------------------ 103 (243)
T d1a6db1 81 IIAG--GLLQQAQGL-INQNVHPTVI------------------------------------------------------ 103 (243)
T ss_dssp HHHH--HHHHHHHHH-HHTTCCHHHH------------------------------------------------------
T ss_pred HHHH--HHHHHHHHH-HHcCCCHHHH------------------------------------------------------
Confidence 4433 223333222 2333333221
Q ss_pred CCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHh
Q psy8873 179 HLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 258 (841)
Q Consensus 179 ~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~ 258 (841)
.+-.+++++++++.++.+.++.+++||||++|++++.+
T Consensus 104 ------------------------------------------~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~ 141 (243)
T d1a6db1 104 ------------------------------------------SEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFR 141 (243)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHH
Confidence 23356666666666666677778899999999999999
Q ss_pred hhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeee
Q psy8873 259 LTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVS 338 (841)
Q Consensus 259 L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk 338 (841)
|.+++++++|++|+++++|++||+.||++||+|||+|+.+++.+|+..|.+++.++|+|..+|.+.||.+.|||||+.||
T Consensus 142 l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk 221 (243)
T d1a6db1 142 LRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVG 221 (243)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHH
T ss_pred HhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhhhhHH
Q psy8873 339 TSAITLSTETVRSILKIDDIL 359 (841)
Q Consensus 339 ~~al~~a~~~a~~il~i~~ii 359 (841)
+|+++.|+++|+++|++|++|
T Consensus 222 ~~ai~~A~e~a~~iL~iD~ii 242 (243)
T d1a6db1 222 KQAIESATEAAIMILRIDDVI 242 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999976
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=100.00 E-value=1.8e-39 Score=336.46 Aligned_cols=239 Identities=38% Similarity=0.636 Sum_probs=200.5
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccccc-----eeecCHHH
Q psy8873 21 SKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHK-----VVVSDYSA 95 (841)
Q Consensus 21 ~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~-----~~i~~~~~ 95 (841)
..|.+||..|+.||+.++++|++||||+||||||+++.|+|+|||||+||++++.++||+++++..- ..+-|-..
T Consensus 2 ~~g~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGtt 81 (245)
T d1a6da1 2 EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTT 81 (245)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHHHHHHHHHHHhhHHhhcccch
Confidence 4689999999999999999999999999999999999999999999999999999999999886322 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeeccccc
Q psy8873 96 MDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHF 175 (841)
Q Consensus 96 l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l 175 (841)
..-++.. +.+.+ -..+.+.|.++.
T Consensus 82 t~ivla~--~ll~~-~~~ll~~G~~p~----------------------------------------------------- 105 (245)
T d1a6da1 82 TAVVLSG--ELLKQ-AETLLDQGVHPT----------------------------------------------------- 105 (245)
T ss_dssp HHHHHHH--HHHHH-HHHHHHHTCCHH-----------------------------------------------------
T ss_pred hhHHHHH--HHHHH-HHHHHHCCCCch-----------------------------------------------------
Confidence 3333332 22222 233334444442
Q ss_pred CCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHH
Q psy8873 176 LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 255 (841)
Q Consensus 176 ~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~ 255 (841)
.+.+..+.++++++..++...+++ ++||||++|+++
T Consensus 106 -------------------------------------------~i~~g~~~a~~~a~~~L~~~a~~~-~v~g~ga~e~~l 141 (245)
T d1a6da1 106 -------------------------------------------VISNGYRLAVNEARKIIDEIAEKS-FLWGGGAVEAEL 141 (245)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHCEEC-EEETTTHHHHHH
T ss_pred -------------------------------------------hhhhhHHHHHHHHHHHHHhhccce-eecCchhHHHHH
Confidence 222334666666666666555555 999999999999
Q ss_pred HHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccce
Q psy8873 256 SLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPL 335 (841)
Q Consensus 256 ~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~ 335 (841)
+.+|..++++.+|++|+++++|++||+.||++|++|+|+|+.+++.+++..|.+++.++|+|..+|.+.||++.|||||+
T Consensus 142 ~~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g~i~d~~~~gV~dp~ 221 (245)
T d1a6da1 142 AMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPL 221 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCCeEeehHhcCccccH
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred eeechhhhhhHHHHHHHHhhhhHH
Q psy8873 336 LVSTSAITLSTETVRSILKIDDIL 359 (841)
Q Consensus 336 ~vk~~al~~a~~~a~~il~i~~ii 359 (841)
.||+|+++.|+++|+++|++|++|
T Consensus 222 ~vk~~~l~~A~e~a~~iL~iD~ii 245 (245)
T d1a6da1 222 RVKTHALESAVEVATMILRIDDVI 245 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhceeC
Confidence 999999999999999999999875
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=100.00 E-value=1.5e-36 Score=316.81 Aligned_cols=243 Identities=34% Similarity=0.546 Sum_probs=198.5
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccccc-----eeecCH
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHK-----VVVSDY 93 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~-----~~i~~~ 93 (841)
+..||+++|.+|+.||+.+|++|++||||+||||||++++|+|+|||||+||+++++++||+++|+..- -++-|-
T Consensus 9 ~~~~g~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~~~~~~GDG 88 (258)
T d1q3qa1 9 QRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDG 88 (258)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHccc
Confidence 456799999999999999999999999999999999999999999999999999999999999985321 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeeccc
Q psy8873 94 SAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLD 173 (841)
Q Consensus 94 ~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~ 173 (841)
...-.++.. +.+. ...++.+.|.++..+.
T Consensus 89 ttt~~vLa~--~ll~-~~~~li~~G~~p~~i~------------------------------------------------ 117 (258)
T d1q3qa1 89 TTTAVVIAG--ELLR-KAEELLDQNIHPSIIT------------------------------------------------ 117 (258)
T ss_dssp HHHHHHHHH--HHHH-HHHHHHHTTCCHHHHH------------------------------------------------
T ss_pred cchhHHhHH--HHHh-hhHHHHhcCCChhHHH------------------------------------------------
Confidence 222233332 1222 2223333444433332
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHH
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 253 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~ 253 (841)
+..+.++++++..++.+..+. ++||||++|+
T Consensus 118 ------------------------------------------------~g~~~a~~~~~~~l~~~~~~~-~~~~~g~~ei 148 (258)
T d1q3qa1 118 ------------------------------------------------KGYALAAEKAQEILDEIAIRA-VLPAGGAPEI 148 (258)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHCEEE-EEECTTHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHhhhhh-ccCCCchHHH
Confidence 233444444444444444445 8999999999
Q ss_pred HHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccccccc
Q psy8873 254 ELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQ 333 (841)
Q Consensus 254 ~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~d 333 (841)
+.+..+..+++...+.++++++.|++||+.||++|++|+|+|+.+++.+++..|.+++.++|+|..+|.+.||++.||||
T Consensus 149 ~~a~~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~ 228 (258)
T d1q3qa1 149 ELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIE 228 (258)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEE
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccc
Confidence 99999999999999999999999999999999999999999999999999999988788899999999999999999999
Q ss_pred ceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 334 PLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 334 p~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|+.||.++++.|++++.++|++|++|..
T Consensus 229 p~~vk~~~l~~A~e~a~~IL~iD~iI~a 256 (258)
T d1q3qa1 229 PLRVKKQAIKSASEAAIMILRIDDVIAA 256 (258)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cHHHHHHHHHHHHHHhCcceeEccEEee
Confidence 9999999999999999999999998853
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=1.3e-34 Score=298.32 Aligned_cols=224 Identities=37% Similarity=0.623 Sum_probs=205.5
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+++||.+++..+.|... ...++++..+.+-+. ...+|..+++.+.+++|+.++||||||+++|+++||+++.++
T Consensus 20 ~tlGP~g~~~~i~~~~g-----~~~iT~Dg~ti~~~~-~~~~~~a~~~~~~~~~~~~~~GDGttt~~vl~~~ll~~~~~~ 93 (243)
T d1a6db1 20 SSLGPRGMDKMLVDSLG-----DIVITNDGVTILKEM-DVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGL 93 (243)
T ss_dssp TTSSTTCCCEEEECTTC-----CEEEECCHHHHHHHS-CCCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCeEEEECCCC-----CeEEecchhhHhhhh-hccchHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 37899998877766433 357888888888877 788999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNV 471 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~ 471 (841)
+..|+||..|++||++|.+.+++.|++++.++...
T Consensus 94 i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~--------------------------------------------- 128 (243)
T d1a6db1 94 INQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA--------------------------------------------- 128 (243)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEE---------------------------------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccc---------------------------------------------
Confidence 99999999999999999999999888776554311
Q ss_pred cccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHH
Q psy8873 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551 (841)
Q Consensus 472 d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~ 551 (841)
T Consensus 129 -------------------------------------------------------------------------------- 128 (243)
T d1a6db1 129 -------------------------------------------------------------------------------- 128 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeE
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV 631 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v 631 (841)
T Consensus 129 -------------------------------------------------------------------------------- 128 (243)
T d1a6db1 129 -------------------------------------------------------------------------------- 128 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhccccc
Q psy8873 632 EEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 711 (841)
Q Consensus 632 ~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~ 711 (841)
||||++|++++.+++
T Consensus 129 -----------------------------------------------------------~ggGa~e~~~a~~l~------ 143 (243)
T d1a6db1 129 -----------------------------------------------------------AGGGATAAEIAFRLR------ 143 (243)
T ss_dssp -----------------------------------------------------------ETTTHHHHHHHHHHH------
T ss_pred -----------------------------------------------------------cCCCchhHHHHHHHh------
Confidence 069999999999999
Q ss_pred ccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc
Q psy8873 712 SGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 791 (841)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 791 (841)
++++++++++|+++++|++||+.||++|++|+|+|+.+++.+|+..|..++.+
T Consensus 144 ---------------------------~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~ 196 (243)
T d1a6db1 144 ---------------------------SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKT 196 (243)
T ss_dssp ---------------------------HHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTT
T ss_pred ---------------------------hhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCc
Confidence 88889999999999999999999999999999999999999999999998899
Q ss_pred eeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhc
Q psy8873 792 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVN 838 (841)
Q Consensus 792 ~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~ 838 (841)
+|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||+||.
T Consensus 197 ~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis 243 (243)
T d1a6db1 197 YGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 243 (243)
T ss_dssp EEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred eeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999984
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4e-34 Score=299.25 Aligned_cols=250 Identities=21% Similarity=0.309 Sum_probs=200.1
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccc----cccccccccceeecCH
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI----HPAAKMMDHKVVVSDY 93 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~----~p~ak~~~~~~~i~~~ 93 (841)
|...||+++|.+++++++.|+++|++||||+|+||||.+++|+|+|||||.||+++++++ ||+++++.
T Consensus 2 k~~~f~~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~-------- 73 (255)
T d1we3a1 2 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLK-------- 73 (255)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHH--------
T ss_pred CccccCHHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHH--------
Confidence 678899999999999999999999999999999999999999999999999999999985 45555521
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeeccc
Q psy8873 94 SAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLD 173 (841)
Q Consensus 94 ~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~ 173 (841)
.+....+....-|.. ...-++...+ +. -+..+ ..|+
T Consensus 74 ------------~~~~~~~~~~gDgtt-----------t~~vl~~~~l-~~-----------~~~~i--~~G~------- 109 (255)
T d1we3a1 74 ------------EVASKTNDVAGDGTT-----------TATVLAQAIV-RE-----------GLKNV--AAGA------- 109 (255)
T ss_dssp ------------HHHHHHHHHHSSCHH-----------HHHHHHHHHH-HH-----------HHHHH--HTTC-------
T ss_pred ------------HhhhhhHHHhhcchh-----------HHHHHHHHHH-Hh-----------hhhHH--hcCC-------
Confidence 011111110000000 0000110000 00 00000 0111
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHH
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 253 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~ 253 (841)
....++++.++++++++++++.+.++..++||||++++
T Consensus 110 ------------------------------------------~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~ 147 (255)
T d1we3a1 110 ------------------------------------------NPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLL 147 (255)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHH
T ss_pred ------------------------------------------ccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhh
Confidence 12567788999999999999999888889999999999
Q ss_pred HHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccccccc
Q psy8873 254 ELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQ 333 (841)
Q Consensus 254 ~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~d 333 (841)
+++..++.++...++++|+|+++|++||+.||+++++|+|+++..++.++...|. +.++|+|..+|.+.||++.||||
T Consensus 148 ~~~~~~~~~~~~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~--~~~~g~d~~~g~~~D~~e~Giid 225 (255)
T d1we3a1 148 RAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATGEFVDMVEAGIVD 225 (255)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTTEEEETTTTTCEE
T ss_pred hhhhhhHhhccCCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeeccc--CCceeEEeeccEEeehhhcCCcC
Confidence 9999999999999999999999999999999999999999999999888877653 45789999999999999999999
Q ss_pred ceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 334 PLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 334 p~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
|++||+++++.|++++.++|++|++|++.|
T Consensus 226 p~~V~~~a~~~A~~~a~~iL~~d~~I~~~p 255 (255)
T d1we3a1 226 PAKVTRSALQNAASIGALILTTEAVVAEKP 255 (255)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred chHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence 999999999999999999999999987653
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.97 E-value=1.4e-31 Score=276.81 Aligned_cols=222 Identities=37% Similarity=0.640 Sum_probs=203.9
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+++||.+++.-+.|.. ....++++..+.+-+. ...+|..+++.+.+++|+.++||||||+++|+++||++++++
T Consensus 24 ~tlGP~G~~~~i~~~~-----g~~~it~Dg~ti~~~~-~~~~~~a~~~~~~~~~~~~~~GDGttt~ivla~~ll~~~~~l 97 (245)
T d1a6da1 24 TTLGPKGMDKMLVDSI-----GDIIISNDGATILKEM-DVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETL 97 (245)
T ss_dssp TTCSTTCCEEEEECSS-----SCEEEECCHHHHHHHS-CCCSHHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEcCC-----CCeEEeccHhHHhhhc-chhhHHHHHHHHHHHhhHHhhcccchhhHHHHHHHHHHHHHH
Confidence 3689998877666532 2347888888888777 778899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNV 471 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~ 471 (841)
+..|+||..|++||+.|.+.+++.|++
T Consensus 98 l~~G~~p~~i~~g~~~a~~~a~~~L~~----------------------------------------------------- 124 (245)
T d1a6da1 98 LDQGVHPTVISNGYRLAVNEARKIIDE----------------------------------------------------- 124 (245)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHCCCCchhhhhhHHHHHHHHHHHHHh-----------------------------------------------------
Confidence 999999999999999999999998876
Q ss_pred cccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHH
Q psy8873 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551 (841)
Q Consensus 472 d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~ 551 (841)
T Consensus 125 -------------------------------------------------------------------------------- 124 (245)
T d1a6da1 125 -------------------------------------------------------------------------------- 124 (245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeE
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV 631 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v 631 (841)
T Consensus 125 -------------------------------------------------------------------------------- 124 (245)
T d1a6da1 125 -------------------------------------------------------------------------------- 124 (245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhccccc
Q psy8873 632 EEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 711 (841)
Q Consensus 632 ~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~ 711 (841)
+.++.++||||++|++++.+|.
T Consensus 125 ----------------------------------------------------~a~~~~v~g~ga~e~~l~~~l~------ 146 (245)
T d1a6da1 125 ----------------------------------------------------IAEKSFLWGGGAVEAELAMRLA------ 146 (245)
T ss_dssp ----------------------------------------------------HCEECEEETTTHHHHHHHHHHH------
T ss_pred ----------------------------------------------------hccceeecCchhHHHHHHHHHH------
Confidence 2233489999999999999998
Q ss_pred ccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc
Q psy8873 712 SGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 791 (841)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 791 (841)
+++++..+.+++++++|++||+.||++|++|+|+|+.+++.+++..|.++..+
T Consensus 147 ---------------------------~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~~~~~~ 199 (245)
T d1a6da1 147 ---------------------------KYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRIS 199 (245)
T ss_dssp ---------------------------HHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTT
T ss_pred ---------------------------HHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCCCchhhhhhhhcccccCCce
Confidence 78888899999999999999999999999999999999999999999988899
Q ss_pred eeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhh
Q psy8873 792 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837 (841)
Q Consensus 792 ~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI 837 (841)
+|+|+.+|.+.||.+.|||||+.+|+++|+.|+|+|++|||||+||
T Consensus 200 ~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 245 (245)
T d1a6da1 200 VGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245 (245)
T ss_dssp EEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred eeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence 9999999999999999999999999999999999999999999986
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.97 E-value=4.6e-31 Score=257.20 Aligned_cols=167 Identities=20% Similarity=0.400 Sum_probs=147.1
Q ss_pred cceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy8873 488 DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVL 567 (841)
Q Consensus 488 dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lv 567 (841)
||++++|++|++++..++||+.++||||++++++|++++++++.++.++++++++.|.++|++++.+++++|.+.|+++|
T Consensus 1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv 80 (168)
T d1gmla_ 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV 80 (168)
T ss_dssp CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 79999999999999445999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEc
Q psy8873 568 LVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISG 646 (841)
Q Consensus 568 i~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~ 646 (841)
+|+++| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.+++..+|+++|++|++
T Consensus 81 ~~~~~I-----~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~ 155 (168)
T d1gmla_ 81 ITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD 155 (168)
T ss_dssp EESSCB-----CHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred EEcCCC-----CHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEe
Confidence 999999 9999999999999999999999999999999999999999999999998 5777778899999999999
Q ss_pred cCCCCceEEEEEeC
Q psy8873 647 IQNPGRTLTVVVRG 660 (841)
Q Consensus 647 ~~~~~~~~TIllrG 660 (841)
|+.+ ++|||+|||
T Consensus 156 ~~~~-~~~TIllRG 168 (168)
T d1gmla_ 156 CKDP-KACTILLRG 168 (168)
T ss_dssp ESST-TSCEEEEEC
T ss_pred cCCC-CEEEEEEeC
Confidence 9987 899999998
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.3e-29 Score=263.44 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=190.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccccceeecCHHHH
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAM 96 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l 96 (841)
.|+..||+++|.++++++..|+++|++||||+||||||++++|.|+|||||+||+++++++||...+
T Consensus 2 ~k~~~fg~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~------------- 68 (252)
T d1ioka1 2 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENM------------- 68 (252)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHH-------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHH-------------
Confidence 5789999999999999999999999999999999999999999999999999999999999983322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccC
Q psy8873 97 DRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFL 176 (841)
Q Consensus 97 ~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~ 176 (841)
...++..+...--. .+ ++ .......++...+.. + +..
T Consensus 69 ----------~a~l~~~~a~~~~~--~~-gD-gttt~~vla~~ll~~-g-----------~~~----------------- 105 (252)
T d1ioka1 69 ----------GAQMVREVASRTND--EA-GD-GTTTATVLAQAIVRE-G-----------LKA----------------- 105 (252)
T ss_dssp ----------HHHHHHHHHHHGGG--GC-ST-HHHHHHHHHHHHHHH-H-----------HHH-----------------
T ss_pred ----------HHHHHHHHHHHHHH--HH-Hh-hhchhHHHHHHHHHH-H-----------HHH-----------------
Confidence 01111111111000 00 11 000011111111110 0 000
Q ss_pred CCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHH
Q psy8873 177 PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELS 256 (841)
Q Consensus 177 ~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~ 256 (841)
+-.|.++..+.+-.++..+++......+.+| ++||||.+.++++
T Consensus 106 -----------------------------------l~~G~~p~~i~~g~~~a~~~v~~~l~~~a~~-i~~~g~~al~~~~ 149 (252)
T d1ioka1 106 -----------------------------------VAAGMNPMDLKRGIDVATAKVVEAIKSAARG-IVVGGGVALVQGA 149 (252)
T ss_dssp -----------------------------------HHTTCCHHHHHHHHHHHHHHHHHHHHTTCBC-EEETTTHHHHHHG
T ss_pred -----------------------------------HHcCCCcchhhhhHHHHHHHHHHHHHHhcCC-CCCchHHhhHHHH
Confidence 0113355556665556666666666666668 9999999999999
Q ss_pred HhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccccccccee
Q psy8873 257 LKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLL 336 (841)
Q Consensus 257 ~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~ 336 (841)
..|... ...++++++|+.++.+|++.|.+++++|+|.|+..++.+.... ....+|||+.++.++||++.||+||++
T Consensus 150 ~~l~~~-~~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~---~~~~~g~~~~~~~~g~~~~~GiidP~k 225 (252)
T d1ioka1 150 KVLEGL-SGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRES---SDKAFGFNAQTEEYGDMFKFGVIDPAK 225 (252)
T ss_dssp GGGGSC-CCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSC---CSTTEEEETTTTEEEEHHHHTCEEEHH
T ss_pred HHHHhh-hcccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeeccc---CcCCEEEEceeeeEeeeecccccCcHH
Confidence 999765 3557889999999999999999999999999999999988643 345789999999999999999999999
Q ss_pred eechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 337 VSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 337 vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
|+++++++|.+++.++|+++.+|.+.|
T Consensus 226 Vt~~al~~A~sva~~lltte~~i~~~p 252 (252)
T d1ioka1 226 VVRTALEDAASVAGLLITTEAMIAEKP 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred HHHHHHHHHHhhhhHHHhhceeeecCC
Confidence 999999999999999999999887653
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.96 E-value=6.1e-29 Score=237.87 Aligned_cols=153 Identities=31% Similarity=0.533 Sum_probs=148.7
Q ss_pred EeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCC
Q psy8873 493 DGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS 572 (841)
Q Consensus 493 ~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 572 (841)
+|++|++.+...+||+.++||||++++|+|++++++++.++.++++++++.|.++|++++..++++|.+.|+++|+++++
T Consensus 1 kGvv~~k~~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~k~ 80 (153)
T d1q3qa2 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 80 (153)
T ss_dssp SSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC
T ss_pred CeEEEeCCCCCccCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceeecCC
Confidence 49999999944599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 573 ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 573 I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++|
T Consensus 81 I-----~~~a~~~l~~~gI~~v~~v~~~dl~ria~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~P 153 (153)
T d1q3qa2 81 I-----DDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP 153 (153)
T ss_dssp B-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC
T ss_pred C-----cHHHHHHHHHcCCceeccCCHHHHHHHHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCCCC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.96 E-value=4.1e-29 Score=238.46 Aligned_cols=152 Identities=25% Similarity=0.499 Sum_probs=148.2
Q ss_pred eEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCc
Q psy8873 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSI 573 (841)
Q Consensus 494 G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I 573 (841)
|++|++++...+||+.++||||++++|+|++++++++.++.++++++++.|.++|++++.+++++|.+.|+++||++++|
T Consensus 1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~I 80 (152)
T d1a6db2 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI 80 (152)
T ss_dssp EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred CEEEeccCCCCCCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 89999999445999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 574 LRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 574 ~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
++++++||.++||++++++++.+|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|++|
T Consensus 81 -----dd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~np 152 (152)
T d1a6db2 81 -----DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP 152 (152)
T ss_dssp -----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred -----cHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.96 E-value=3.5e-29 Score=260.73 Aligned_cols=225 Identities=38% Similarity=0.606 Sum_probs=206.9
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+++||.+++..+.|.. .+..++++..+.+-+. .+.+|..+++.+++++|+.++||||||+++|+++||+++.++
T Consensus 33 ~tlGP~g~~~~i~~~~-----g~~~iT~Dg~ti~~~~-~~~~~~a~~~~~~a~~~~~~~GDGttt~~vLa~~ll~~~~~l 106 (258)
T d1q3qa1 33 TTLGPKGMDKMLVDSL-----GDIVVTNDCATILDKI-DLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEEL 106 (258)
T ss_dssp TTCSTTCCEEEEECTT-----CCEEEESCHHHHHHHS-CCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCeEEEECCC-----CCeEEeccHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHccccchhHHhHHHHHhhhHHH
Confidence 3789998887776643 3567899998888776 678899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNV 471 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~ 471 (841)
++.|+||..|++||+.|.+.+++.|++++..
T Consensus 107 i~~G~~p~~i~~g~~~a~~~~~~~l~~~~~~------------------------------------------------- 137 (258)
T d1q3qa1 107 LDQNIHPSIITKGYALAAEKAQEILDEIAIR------------------------------------------------- 137 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE-------------------------------------------------
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHhhhh-------------------------------------------------
Confidence 9999999999999999999999988763321
Q ss_pred cccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHH
Q psy8873 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551 (841)
Q Consensus 472 d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~ 551 (841)
T Consensus 138 -------------------------------------------------------------------------------- 137 (258)
T d1q3qa1 138 -------------------------------------------------------------------------------- 137 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeE
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV 631 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v 631 (841)
T Consensus 138 -------------------------------------------------------------------------------- 137 (258)
T d1q3qa1 138 -------------------------------------------------------------------------------- 137 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhccccc
Q psy8873 632 EEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 711 (841)
Q Consensus 632 ~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~ 711 (841)
.++||||++|+.++..+.
T Consensus 138 --------------------------------------------------------~~~~~~g~~ei~~a~~l~------ 155 (258)
T d1q3qa1 138 --------------------------------------------------------AVLPAGGAPEIELAIRLD------ 155 (258)
T ss_dssp --------------------------------------------------------EEEECTTHHHHHHHHHHH------
T ss_pred --------------------------------------------------------hccCCCchHHHHHHHHHH------
Confidence 488999999999999998
Q ss_pred ccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc
Q psy8873 712 SGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 791 (841)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 791 (841)
.+++...+.+++++++|++||+.||++|++|+|+|+.+++.+++..|..++.+
T Consensus 156 ---------------------------~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~ 208 (258)
T d1q3qa1 156 ---------------------------EYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLG 208 (258)
T ss_dssp ---------------------------HHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTT
T ss_pred ---------------------------hhhcccchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCc
Confidence 77788889999999999999999999999999999999999999999888889
Q ss_pred eeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 792 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 792 ~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+|+.+|.+.||.+.|||||+.+|.++++.|++++.+||+||++|+++
T Consensus 209 ~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak 257 (258)
T d1q3qa1 209 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK 257 (258)
T ss_dssp EEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred eEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence 9999999999999999999999999999999999999999999999986
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.96 E-value=5.9e-29 Score=237.54 Aligned_cols=152 Identities=32% Similarity=0.525 Sum_probs=147.5
Q ss_pred EEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecC
Q psy8873 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQK 571 (841)
Q Consensus 492 i~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 571 (841)
++|++|++++..++||+.++||||++++|+|++++++.+.++.+++++++++|.++|++++..++++|...|+++||+++
T Consensus 1 i~Gvv~~k~~~~~~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~~ 80 (152)
T d1assa_ 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (152)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CeEEEEeCccCCCCCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEec
Confidence 47999999994459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccC
Q psy8873 572 SILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 648 (841)
Q Consensus 572 ~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~ 648 (841)
+| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|+||+
T Consensus 81 ~I-----~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 81 GI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152 (152)
T ss_dssp CB-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred cc-----cHHHHHHHHHcCCccccCCCHHHHHHHHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999985
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.4e-27 Score=247.78 Aligned_cols=243 Identities=20% Similarity=0.336 Sum_probs=182.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccccceeecC
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMDHKVVVSD 92 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~~~~~i~~ 92 (841)
.|+..||+++|.++++++..|+++|++||||+||||||+++.|+|+|||||+||+++++++|| ++++++.
T Consensus 2 ak~~~fg~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~------ 75 (252)
T d1kp8a1 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE------ 75 (252)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHH------
T ss_pred CccccCCHHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHH------
Confidence 478899999999999999999999999999999999999999999999999999999999999 4554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecc
Q psy8873 93 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASL 172 (841)
Q Consensus 93 ~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l 172 (841)
+....+...--|-. ...-++...|.+ + +..+ ..|.
T Consensus 76 --------------~a~~~~~~~GDgtt-----------t~~vla~~ll~~-~-----------~~~i--~~G~------ 110 (252)
T d1kp8a1 76 --------------VASKANDAAGDGTT-----------TATVLAQAIITE-G-----------LKAV--AAGM------ 110 (252)
T ss_dssp --------------HHHHHHHHHSSCHH-----------HHHHHHHHHHHH-H-----------HHHH--HTTC------
T ss_pred --------------HHHhhhHHhccccc-----------hhHHHHHHHHHH-H-----------HHHH--HcCC------
Confidence 11111111000000 001111111111 0 0000 0011
Q ss_pred cccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc---CccccCCC
Q psy8873 173 DHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ---RALIAGGG 249 (841)
Q Consensus 173 ~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~---~~vvpGgG 249 (841)
++ -++++.++.|...+...+++ + +.||++
T Consensus 111 --------------------------------------------~p---~~i~~gi~~a~~~v~~~L~~~s~~-i~~~~~ 142 (252)
T d1kp8a1 111 --------------------------------------------NP---MDLKRGIDKAVTVAVEELKALSVG-VVAGGG 142 (252)
T ss_dssp --------------------------------------------CH---HHHHHHHHHHHHHHHHHHHHHCBC-EEETTT
T ss_pred --------------------------------------------cc---hhhhhhhhhHHHHHHHHHHhccee-eccCch
Confidence 11 01444455555555544443 6 999999
Q ss_pred hHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccc
Q psy8873 250 APEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 250 a~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~ 329 (841)
...++++..+... +..++++++|+.++.+||+.|.+++++|+|.++..++.++.. .+.++|||..++.++|+++.
T Consensus 143 ~~~v~~~~~~~~~-k~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~----~~~~~g~~~~~~~~g~~~~~ 217 (252)
T d1kp8a1 143 VALIRVASKLADL-RGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGNMIDM 217 (252)
T ss_dssp HHHHHHHHHTTTC-CCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH----SCTTEEEETTTTEEEETTTT
T ss_pred hhhhHHHHHhhhh-cccCccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeee----cCCCeeEEEEEEEEEEEEee
Confidence 9999999988765 345689999999999999999999999999999999999864 23578999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
|++||++|++.+++.|...+.++|.++..|.+.+
T Consensus 218 G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~p 251 (252)
T d1kp8a1 218 GILDPTKVTRSALQYAASVAGLMITTECMVTDLP 251 (252)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred ccCCcceeccHhhhhheeccceeEeecccccCCC
Confidence 9999999999999999999999999999887765
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.87 E-value=6.2e-22 Score=193.60 Aligned_cols=87 Identities=25% Similarity=0.333 Sum_probs=80.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHH
Q psy8873 744 VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823 (841)
Q Consensus 744 ~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A 823 (841)
.++.++.++++|++||+.||++|++|+|+|+..++.+++. .++++|||..+|++.||++.||+||+.|++++|++|
T Consensus 94 ~~~~e~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~~~~~----~~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A 169 (180)
T d1sjpa1 94 LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNA 169 (180)
T ss_dssp CCTHHHHHHHHHHHHTTHHHHHHHHTTTSCHHHHHHHHHT----SCTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhc----cccccCccccccccccHHHcCCcCcHHHHHHHHHhH
Confidence 3567899999999999999999999999999999988864 467899999999999999999999999999999999
Q ss_pred HHHHHHHHchh
Q psy8873 824 TETVRSILKID 834 (841)
Q Consensus 824 ~e~a~~iL~iD 834 (841)
+++|++||+++
T Consensus 170 ~s~a~~~ltte 180 (180)
T d1sjpa1 170 ASIAGLFLTTE 180 (180)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.86 E-value=2.4e-22 Score=191.69 Aligned_cols=133 Identities=26% Similarity=0.459 Sum_probs=125.1
Q ss_pred HHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhhe
Q psy8873 67 GATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i 146 (841)
+...+-+.+|+.|..++ +.++.++++++++.+.++|++++.+++++|.+.|+++|+++++ |+++|+|||.++||
T Consensus 21 ~kIlll~~~Le~~k~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~k~-----I~~~a~~~l~~~gI 94 (153)
T d1q3qa2 21 AKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGI 94 (153)
T ss_dssp EEEEEECSCBSCCCCSS-CCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC-----BCHHHHHHHHHTTC
T ss_pred ccEEEEecccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceeecCC-----CcHHHHHHHHHcCC
Confidence 55555566777777776 7899999999999999999999999999999999999999998 89999999999999
Q ss_pred eeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCC
Q psy8873 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 147 ~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
++++++++.+|+|||++|||+++++++++++++||+|+.|+++.+|+++|++|+||++|
T Consensus 95 ~~v~~v~~~dl~ria~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~P 153 (153)
T d1q3qa2 95 MAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP 153 (153)
T ss_dssp EEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC
T ss_pred ceeccCCHHHHHHHHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999875
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.86 E-value=2.6e-22 Score=194.80 Aligned_cols=142 Identities=20% Similarity=0.391 Sum_probs=117.9
Q ss_pred HHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhhe
Q psy8873 67 GATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i 146 (841)
+...+-+.+++.|...+ ..++.++++++++.+.++|++++.+++++|.+.|+++|+++++ |+++|+|||.++||
T Consensus 26 ~kIlll~~~le~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv~~~~~-----I~~~a~~~L~~~gI 99 (168)
T d1gmla_ 26 PRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANV 99 (168)
T ss_dssp CCEEEESSCBSCC---------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSC-----BCHHHHHHHHHTTC
T ss_pred ceEEEEecccccccccc-ccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEcCC-----CCHHHHHHHHHCCC
Confidence 44444456677766665 7789999999999999999999999999999999999999998 89999999999999
Q ss_pred eeeccccchhHHHHHHHhCCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcc
Q psy8873 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRG 215 (841)
Q Consensus 147 ~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG 215 (841)
++++++++.+|+|||++|||+++++++++++++||+ |+.++++.++++++++|+||+.+ .+|||+|||
T Consensus 100 ~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TIllRG 168 (168)
T d1gmla_ 100 TAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRG 168 (168)
T ss_dssp EEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESST-TSCEEEEEC
T ss_pred eeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCCC-CEEEEEEeC
Confidence 999999999999999999999999999999999998 56677888999999999999985 799999998
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.85 E-value=2.9e-22 Score=190.58 Aligned_cols=134 Identities=24% Similarity=0.468 Sum_probs=124.2
Q ss_pred cHHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhh
Q psy8873 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145 (841)
Q Consensus 66 Dg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~ 145 (841)
|+...+-+.+|+.+..++ ++++.++++++++.+.++|++++.+++++|.+.|++||+++++ |+++|+|||.++|
T Consensus 19 ~~kIlll~~~Le~~k~~~-~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~-----Idd~a~~~l~k~g 92 (152)
T d1a6db2 19 DAKIALLDAPLEIKKPEF-DTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAG 92 (152)
T ss_dssp EEEEEEESSCBSCCCCSS-EEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC-----BCHHHHHHHHHTT
T ss_pred CCcEEEEecccccccccc-cceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCC-----CcHHHHHHHHHcC
Confidence 344455556677766665 7889999999999999999999999999999999999999998 8999999999999
Q ss_pred eeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCC
Q psy8873 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 146 i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
|++++++++.+|+|||++|||+++++++++++++||+|++|+++++|+++|++|+||++|
T Consensus 93 I~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~np 152 (152)
T d1a6db2 93 IYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP 152 (152)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred cchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999875
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.83 E-value=1.1e-21 Score=186.65 Aligned_cols=132 Identities=30% Similarity=0.471 Sum_probs=121.7
Q ss_pred cHHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhh
Q psy8873 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145 (841)
Q Consensus 66 Dg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~ 145 (841)
|+...+-+.+|+.|..++ +.++.++++++++.+.++|++++.+++++|.++|+++|+++++ |+++|+|||.++|
T Consensus 21 ~~kI~ll~~~Le~~k~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~~~-----I~~~a~~~l~k~g 94 (152)
T d1assa_ 21 NAKIALIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEG 94 (152)
T ss_dssp EEEEEEESSCBSCCHHHH-HHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSC-----BCHHHHHHHHHTT
T ss_pred CceEEEEecccccccccc-cceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEecc-----ccHHHHHHHHHcC
Confidence 344445556667766665 6788999999999999999999999999999999999999998 8999999999999
Q ss_pred eeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEccc
Q psy8873 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203 (841)
Q Consensus 146 i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~ 203 (841)
|++++++++++|+|||++|||+++++++++++++||+|++|+++.+|+++|++|+||+
T Consensus 95 I~~v~~v~~~dl~ria~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 95 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152 (152)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred CccccCCCHHHHHHHHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999985
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.79 E-value=5.6e-20 Score=179.56 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q psy8873 223 EAARSLHDALCVVRCLVKQR-ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 301 (841)
Q Consensus 223 e~k~~l~dal~~~~~~~~~~-~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~ 301 (841)
++++.+++|+..+...+++. +.+||||..++++...+... ..++++++|+++|++||+.|||+|++|||+||..++.
T Consensus 52 ~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~--~~~~~e~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~ 129 (180)
T d1sjpa1 52 GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDEL--KLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAE 129 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGS--CCCTHHHHHHHHHHHHTTHHHHHHHHTTTSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhh
Confidence 67889999999988888777 68999999999988888754 6678999999999999999999999999999999999
Q ss_pred HHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhh
Q psy8873 302 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 356 (841)
Q Consensus 302 ~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~ 356 (841)
+++.. ..++|||..++.|.||++.|||||++|+++||++|+++|+++|+++
T Consensus 130 ~~~~~----~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte 180 (180)
T d1sjpa1 130 KVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE 180 (180)
T ss_dssp HHHTS----CTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhcc----ccccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence 99753 3479999999999999999999999999999999999999999874
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=1.8e-18 Score=179.59 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=134.0
Q ss_pred EEeCCC-HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhh
Q psy8873 657 VVRGSN-KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSL 735 (841)
Q Consensus 657 llrG~t-~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (841)
+-.|.+ ..+.+++++++++++++++...++..++||||++++.++..+.
T Consensus 105 i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~------------------------------ 154 (255)
T d1we3a1 105 VAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVE------------------------------ 154 (255)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHH------------------------------
T ss_pred HhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhH------------------------------
Confidence 344444 5677999999999999999988888899999999999999998
Q ss_pred hhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHH
Q psy8873 736 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLV 815 (841)
Q Consensus 736 ~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~v 815 (841)
.++.+.++.+++++++|++||+.||+++++|+|+++..+.......| .+.++|+|..+|.+.||++.|||||+.|
T Consensus 155 ---~~~~~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~--~~~~~g~d~~~g~~~D~~e~Giidp~~V 229 (255)
T d1we3a1 155 ---ELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET--KNPRYGFNAATGEFVDMVEAGIVDPAKV 229 (255)
T ss_dssp ---HHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCC--SCTTEEEETTTTEEEETTTTTCEEEHHH
T ss_pred ---hhccCCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecc--cCCceeEEeeccEEeehhhcCCcCchHh
Confidence 67778889999999999999999999999999999988877765533 3567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 816 STSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 816 k~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+.++++.|++++.+||++|++|+.+
T Consensus 230 ~~~a~~~A~~~a~~iL~~d~~I~~~ 254 (255)
T d1we3a1 230 TRSALQNAASIGALILTTEAVVAEK 254 (255)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred hHHHHHHHHHHhchHhhcchhhhcC
Confidence 9999999999999999999999864
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.3e-14 Score=145.33 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
.++++..++.+||+.|.++++.|+|.++..++..+.. .++++|+|..++.++|+++.|++||+.|...+++.|...
T Consensus 161 d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~----~~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~ 236 (252)
T d1kp8a1 161 DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASV 236 (252)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH----SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHH
T ss_pred cHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeee----cCCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheec
Confidence 4567888999999999999999999999999988764 467799999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
+.+||.+|..|..+
T Consensus 237 ~~~iL~te~~i~~~ 250 (252)
T d1kp8a1 237 AGLMITTECMVTDL 250 (252)
T ss_dssp HHHHHTEEEEEEEC
T ss_pred cceeEeecccccCC
Confidence 99999999998754
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.48 E-value=6.7e-16 Score=136.59 Aligned_cols=102 Identities=29% Similarity=0.356 Sum_probs=89.5
Q ss_pred CccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC-CCcccccceEEEEccCCccccceeEEeEEEecCCC
Q psy8873 424 TLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSA 502 (841)
Q Consensus 424 ~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~-~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~ 502 (841)
+..|++.|.++|+|+++||+...+.++|++++++|+..+.++.. ...+|+++|+|++..||+++||++++|++|++.
T Consensus 2 d~~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS~lv~G~vl~k~-- 79 (107)
T d1q3qa3 2 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVKAVTILIR-- 79 (107)
T ss_dssp CTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEEEEE--
T ss_pred CccHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhCEEEccEEEEcc--
Confidence 34588999999999999999999999999999999999975432 235788899999999999999999999999985
Q ss_pred CCCCCceeecceEEEEEeecCCCccc
Q psy8873 503 NVNGPKRVEKAKIGLIQFCISPPKTD 528 (841)
Q Consensus 503 ~~~m~~~~~n~killl~~~Le~~~~~ 528 (841)
+ +||+.++|+||++++|+|+....+
T Consensus 80 ~-~mp~~i~n~ki~lld~~le~~~~~ 104 (107)
T d1q3qa3 80 G-GTEHVIDEVERALEDAVKVVKDVM 104 (107)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCcccCCcCEeeccCcHHHHhhc
Confidence 4 899999999999999999865544
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.47 E-value=1.8e-15 Score=132.94 Aligned_cols=100 Identities=28% Similarity=0.292 Sum_probs=88.5
Q ss_pred chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC-CCcccccceEEEEccCCccccceeEEeEEEecCCCCCC
Q psy8873 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVN 505 (841)
Q Consensus 427 ~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~-~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~ 505 (841)
|++.|.++|+|+++||+...+.++|++|+++|+..+.+... ...+|+++|+|.+..||++.||++++|+++.+. + .
T Consensus 2 D~e~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS~lv~G~vl~k~--~-~ 78 (105)
T d1a6da3 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISAVSILIR--G-G 78 (105)
T ss_dssp CHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESCEEEEEC--C-S
T ss_pred cHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhheeeeeccceecc--C-C
Confidence 67899999999999999999999999999999999975322 235899999999999999999999999999874 4 8
Q ss_pred CCceeecceEEEEEeecCCCcccC
Q psy8873 506 GPKRVEKAKIGLIQFCISPPKTDM 529 (841)
Q Consensus 506 m~~~~~n~killl~~~Le~~~~~~ 529 (841)
||+.++|+||++++++++..++++
T Consensus 79 mp~~~~~~kialld~~~~~~~te~ 102 (105)
T d1a6da3 79 TDHVVSEVERALNDAIRVVAITKE 102 (105)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcCeeEecchhhcccccc
Confidence 999999999999999988666543
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.39 E-value=4.6e-15 Score=130.90 Aligned_cols=96 Identities=28% Similarity=0.411 Sum_probs=82.4
Q ss_pred chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC-CCcccccceEEEEccCCccccceeEEeEEE---ecCC-
Q psy8873 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDIKVIRKLGGTVEDTELVDGLVF---TQKS- 501 (841)
Q Consensus 427 ~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~-~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~---~~~~- 501 (841)
|++.|.++|+|+++||+.+.+.++|++|+++|+..+.+... ...+|+++|+|++.+||+++||++++|+++ +++.
T Consensus 4 D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS~li~G~v~~~~~~~k~ 83 (107)
T d1a6db3 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGETE 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEESSH
T ss_pred hHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhcEEEeccceeeccCCce
Confidence 78899999999999999999999999999999999965322 235888899999999999999999999766 3333
Q ss_pred -CCCCCCceeecceEEEEEeecC
Q psy8873 502 -ANVNGPKRVEKAKIGLIQFCIS 523 (841)
Q Consensus 502 -~~~~m~~~~~n~killl~~~Le 523 (841)
...+||+.++|+ |+|++|+||
T Consensus 84 ~~~~~Mpk~i~n~-I~lld~~LE 105 (107)
T d1a6db3 84 HVVDEMERSITDS-LHVVASALE 105 (107)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eccCCCCccccCc-EEEEecCCc
Confidence 113899999998 999999986
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=1.2e-12 Score=134.56 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhh
Q psy8873 660 GSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTK 739 (841)
Q Consensus 660 G~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (841)
|.++..+.+-.+...+++......+..| ++||||.+.++++..|. .
T Consensus 109 G~~p~~i~~g~~~a~~~v~~~l~~~a~~-i~~~g~~al~~~~~~l~---------------------------------~ 154 (252)
T d1ioka1 109 GMNPMDLKRGIDVATAKVVEAIKSAARG-IVVGGGVALVQGAKVLE---------------------------------G 154 (252)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCBC-EEETTTHHHHHHGGGGG---------------------------------S
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhcCC-CCCchHHhhHHHHHHHH---------------------------------h
Confidence 5566555544444444443333344567 99999999999987776 1
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHH
Q psy8873 740 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSA 819 (841)
Q Consensus 740 ~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~ 819 (841)
....++.++.++.++.+|++.|.+++++|+|.|+..++.+... ...+.+|+|..+++++||++.||+||+.|++.+
T Consensus 155 -~~~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~---~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~~a 230 (252)
T d1ioka1 155 -LSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRE---SSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTA 230 (252)
T ss_dssp -CCCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHS---CCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHH
T ss_pred -hhcccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecc---cCcCCEEEEceeeeEeeeecccccCcHHHHHHH
Confidence 1223456789999999999999999999999999999988754 345689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchhhhhcCC
Q psy8873 820 ITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 820 l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++|++++.+||++|.+|..+
T Consensus 231 l~~A~sva~~lltte~~i~~~ 251 (252)
T d1ioka1 231 LEDAASVAGLLITTEAMIAEK 251 (252)
T ss_dssp HHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHhhhhHHHhhceeeecC
Confidence 999999999999999998653
|
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.8e-11 Score=118.92 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=111.7
Q ss_pred ceeEEeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8873 489 TELVDGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKK 561 (841)
Q Consensus 489 S~li~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~ 561 (841)
-++.+|+.|+++|.+ +.|.-.++||.|++.+..+ ++. +.+.++++.+.+
T Consensus 4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI-------------~~~-----------~~i~p~Le~~~~ 59 (193)
T d1kida_ 4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI-------------SNI-----------REMLPVLEAVAK 59 (193)
T ss_dssp CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEE-------------CCH-----------HHHHHHHHHHHH
T ss_pred ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCc-------------ccH-----------HHHHHHHHHHHh
Confidence 467789999999944 2233445667666665544 556 347788999999
Q ss_pred cCCcEEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeee
Q psy8873 562 AGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADL 630 (841)
Q Consensus 562 ~g~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~ 630 (841)
.+.+|+|++.+|+++||..++.|.++ ..+++||+.+. ++.|++||.+|||++++. +++++.++||+|++
T Consensus 60 ~~~pLlIIA~di~~~aL~~Lv~N~~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~k 139 (193)
T d1kida_ 60 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKR 139 (193)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCcEEEEeccccHHHHHHHHHhhhccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccE
Confidence 99999999999999999999999998 56999999874 678999999999999984 67788999999998
Q ss_pred EEEEEecCeeEEEEEccCCCCceEEEEEeCC-CHHHHHHHHHHHHHHH
Q psy8873 631 VEEIPAGNSRFVKISGIQNPGRTLTVVVRGS-NKLVLDEAARSLHDAL 677 (841)
Q Consensus 631 v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~-t~~~l~e~~r~i~dal 677 (841)
+.+ ++--|++++|. +...++++...++.-+
T Consensus 140 v~i-----------------tk~~T~ii~g~g~~~~I~~Ri~~Lk~~l 170 (193)
T d1kida_ 140 VVI-----------------NKDTTTIIDGVGEEAAIQGRVAQIRQQI 170 (193)
T ss_dssp EEE-----------------CSSCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred EEE-----------------ecCceEEEcCCCCHHHHHHHHHHHHHHH
Confidence 885 12234444444 5555666655555433
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=2.5e-11 Score=116.13 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=80.6
Q ss_pred EeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8873 493 DGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN 565 (841)
Q Consensus 493 ~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~ 565 (841)
+|+.|+++|.+ +.|.-.++||.|++.+..++. . +.+.++++...+.+.+
T Consensus 1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~-------------~-----------~~i~p~Le~~~~~~~P 56 (176)
T d1ioka2 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSS-------------L-----------QPMVPLLESVIQSQKP 56 (176)
T ss_dssp CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCC-------------C-----------CC-----------CCC
T ss_pred CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCc-------------H-----------HHHHHHHHHHHhcCCc
Confidence 59999999943 234445778888888777643 3 2377889999999999
Q ss_pred EEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEE
Q psy8873 566 VLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEI 634 (841)
Q Consensus 566 lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~ 634 (841)
|+|++.+|+++||..++.|.++ ..++++|+.+. ++.|++||.+|||++++. +++++.++||+|+++.+.
T Consensus 57 LlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~vt 136 (176)
T d1ioka2 57 LLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSIN 136 (176)
T ss_dssp CEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHhcCCceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEEe
Confidence 9999999999999999999988 68999999885 678999999999999984 678889999999998861
Q ss_pred EecCeeEEEEEccCCCCceEEEEE-eCCCHHHHHHHHHHHHHHH
Q psy8873 635 PAGNSRFVKISGIQNPGRTLTVVV-RGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 635 ~ig~~~~~~~~~~~~~~~~~TIll-rG~t~~~l~e~~r~i~dal 677 (841)
+--|+++ ++.....++++.+.++..+
T Consensus 137 -----------------k~~T~ii~g~g~~~~i~~Ri~~Lk~~i 163 (176)
T d1ioka2 137 -----------------KDNTTIVDGAGEKAEIEARVSQIRQQI 163 (176)
T ss_dssp -----------------SSCEEEESCCCCHHHHHHHHHHHHHHH
T ss_pred -----------------cCceEEEcCCCCHHHHHHHHHHHHHHH
Confidence 2234444 4556667777766665544
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=3.4e-11 Score=111.09 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=97.5
Q ss_pred eEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Q psy8873 494 GLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 566 (841)
Q Consensus 494 G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~l 566 (841)
|+.|+++|.+ +.|.-..+||.|++.+..+ ++. +.+.++++...+.+.+|
T Consensus 1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI-------------~~~-----------~~ilp~Le~~~~~~rPL 56 (145)
T d1srva_ 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-------------SNV-----------RELLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEE-------------CCH-----------HHHHHHHHHHHTTTCCE
T ss_pred CCccccCccCCccccCcccCEEEecCceeeeccccc-------------ccH-----------HHHHHHHHHHHHhCCcE
Confidence 8899999944 2344557788888776654 455 34778899999999999
Q ss_pred EEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEE
Q psy8873 567 LLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEE 633 (841)
Q Consensus 567 vi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~ 633 (841)
+|++++|++|||..++.|.++ ..+++||+.+. ++.|++||.+|||++++. +++++.++||+|+++.+
T Consensus 57 lIIA~di~~eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~v 134 (145)
T d1srva_ 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEeCccCHHHHHHHHHHHhcCceEEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEE
Confidence 999999999999999999999 58999999885 788999999999999974 67788899999999885
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.18 E-value=1.3e-10 Score=112.08 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=97.7
Q ss_pred eEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Q psy8873 494 GLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 566 (841)
Q Consensus 494 G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~l 566 (841)
|+.|+++|.+ +.|.-.++||.|++.+..++ +. +.+.++++.+.+.+.+|
T Consensus 1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~-------------~~-----------~~i~p~Le~~~~~~rPL 56 (184)
T d1sjpa2 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS-------------TV-----------KDLLPLLEKVIGAGKPL 56 (184)
T ss_dssp EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBC-------------CS-----------TTTHHHHHHHHTTTCCE
T ss_pred CCccCcCccCcccccCCCCCEEEecCCEEEEecCccC-------------cH-----------HHHHHHHHHhhccCCcE
Confidence 8999999944 23444577888888877663 33 23778899999999999
Q ss_pred EEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEE
Q psy8873 567 LLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEE 633 (841)
Q Consensus 567 vi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~ 633 (841)
+|++.+|+++||..++.|..+ ..++++|+.+. ++.|++||.+|||++++ ++++++.++||+|+++.+
T Consensus 57 lIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~i 134 (184)
T d1sjpa2 57 LIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV 134 (184)
T ss_dssp EEEESCBCHHHHHHHHHHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEE
T ss_pred EEEcchhhHHHHHHHHHHHhcCchheecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEE
Confidence 999999999999999999998 57999999886 78899999999999998 477889999999998885
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=6.9e-09 Score=95.37 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeecccc-----chhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.++++.+.+.+.||+|++++|+++++..++.+.+. ..++.+++.+. ++.|+|||.+|||++++ +++
T Consensus 40 ~~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~ 119 (145)
T d1srva_ 40 RELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLE 119 (145)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGG
T ss_pred HHHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCceEEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccc
Confidence 56778999999999999999999999999999999988 46777777665 67799999999999997 577
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+++.++||+|+++.+. .++++++.|
T Consensus 120 ~~~~~~LGsa~kv~vt---kd~T~ii~G 144 (145)
T d1srva_ 120 NATLSMLGRAERVRIT---KDETTIVGG 144 (145)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHHHCCcccEEEEe---CCccEEeCC
Confidence 8889999999887765 666666654
|
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.1e-07 Score=91.69 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhh-hheeeecccc-----chhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK-IKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~-~~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.++++.+.+.+.||+|++++|+++++..++.+.+.. .++.+++.+. ++.|+|||.+|||++++ +++
T Consensus 48 ~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~ 127 (193)
T d1kida_ 48 REMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 127 (193)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred HHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhhccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccc
Confidence 456778888999999999999999999999999999873 4676666654 56699999999999998 478
Q ss_pred ccCCCCCcccceeeee
Q psy8873 174 HFLPEHLSSADLVEEI 189 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~ 189 (841)
+++.++||+|+++.+.
T Consensus 128 ~~~~~~LG~~~kv~it 143 (193)
T d1kida_ 128 KATLEDLGQAKRVVIN 143 (193)
T ss_dssp GCCGGGCEEEEEEEEC
T ss_pred cCCHhHcCcccEEEEe
Confidence 8899999999887755
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=98.58 E-value=1.1e-07 Score=91.16 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeecccc-----chhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.++++.+.+.+.||+|++++|+++++..++.+.+. ..++.+++.+. ++.|+|||.+|||++++ +++
T Consensus 40 ~~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~ 119 (184)
T d1sjpa2 40 KDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLE 119 (184)
T ss_dssp TTTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSS
T ss_pred HHHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCchheecccCCCCCcchHHHHHHHHHHhCCEEeccccccccc
Confidence 45678889999999999999999999999999999888 46677777765 66699999999999998 678
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEE
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKIS 200 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~ 200 (841)
+++.++||+|+++... .++++++.
T Consensus 120 ~~~~~~LG~~~kv~it---k~~T~ii~ 143 (184)
T d1sjpa2 120 NADLSLLGKARKVVVT---KDETTIVE 143 (184)
T ss_dssp SCCTTTSEEEEEEEEC---SSCEEEEE
T ss_pred ccchhhCCeeeEEEEe---cCceEEec
Confidence 8899999999887765 34444443
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.56 E-value=4.9e-08 Score=92.87 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.++++.+.+.+.||+|++++|+++++..++.+.+. ..++.+++.+ +++.|+|||.+|||++++ +++
T Consensus 41 ~~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~ 120 (176)
T d1ioka2 41 QPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120 (176)
T ss_dssp CC-----------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCCceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChh
Confidence 45667888889999999999999999999999999887 4566666655 466799999999999997 478
Q ss_pred ccCCCCCcccceeeee
Q psy8873 174 HFLPEHLSSADLVEEI 189 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~ 189 (841)
+++.++||+|+++.+.
T Consensus 121 ~~~~~~LG~a~kv~vt 136 (176)
T d1ioka2 121 NVTIDMLGRAKKVSIN 136 (176)
T ss_dssp ---CTTSEEEEEEEEC
T ss_pred hCCHHHCceeeEEEEe
Confidence 8899999999988765
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=96.64 E-value=0.0011 Score=54.38 Aligned_cols=66 Identities=21% Similarity=0.175 Sum_probs=50.7
Q ss_pred chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCC
Q psy8873 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG 506 (841)
Q Consensus 427 ~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m 506 (841)
+++++.++|..|.+ + +.+++++++|+.+++. ++ .|.++...+ .-.+.++++|+.|+++|.+
T Consensus 4 ~~e~i~~VAtISa~-D------~~iG~lIa~A~~kVG~---dG-----vItvEe~~~-~~t~le~veG~~~d~Gy~S--- 64 (89)
T d1sjpa3 4 TKEQIAATAAISAG-D------QSIGDLIAEAMDKVGN---EG-----VITVEESNT-FGLQLELTEVAVIKAGAAT--- 64 (89)
T ss_dssp SHHHHHHHHHHHTT-C------HHHHHHHHHHHHHSCT---TS-----CEEEEEESS-SSEEEEEESEEEEEEECSS---
T ss_pred CHHHHHHhhheecC-C------HHHHHHHHHHHHhcCC---CC-----ceEEEeccc-cceEEEEEEEEEecCCccC---
Confidence 67889999998874 4 6899999999999975 44 567776443 2245699999999999966
Q ss_pred Cceee
Q psy8873 507 PKRVE 511 (841)
Q Consensus 507 ~~~~~ 511 (841)
|++++
T Consensus 65 p~fvt 69 (89)
T d1sjpa3 65 EVELK 69 (89)
T ss_dssp HHHHH
T ss_pred ceEEc
Confidence 55544
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.00086 Score=56.11 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=51.9
Q ss_pred cCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecC
Q psy8873 422 PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQK 500 (841)
Q Consensus 422 ~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~ 500 (841)
|++ +.+.+.++|..|.|++ +.+++++.+|+.+++. +| .|.++. |.+. ...++++|+.|+++
T Consensus 1 Pv~--~~~~i~~VAtISan~D------~~iG~lIa~a~~~vg~---dG-----vitvee--~~~~~~~~~ivEG~~~d~G 62 (97)
T d1kp8a3 1 PCS--DSKAIAQVGTISANSD------ETVGKLIAEAMDKVGK---EG-----VITVED--GTGLQDELDVVERVAKLAG 62 (97)
T ss_dssp CCC--SHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHCT---TS-----EEEEEC--CSSSSCEEEEEHHHHHHHH
T ss_pred CCC--CHHHHhhheeEecCCc------HHHHHHHHHHHHHhcc---cc-----eEEEec--cccchhHHHHHHHHHhhcC
Confidence 455 7889999999999987 8999999999999975 44 577765 3334 45589999999999
Q ss_pred CCC
Q psy8873 501 SAN 503 (841)
Q Consensus 501 ~~~ 503 (841)
|.+
T Consensus 63 ~vS 65 (97)
T d1kp8a3 63 GVA 65 (97)
T ss_dssp CEE
T ss_pred Ccc
Confidence 855
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.84 E-value=0.00082 Score=56.03 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=50.3
Q ss_pred cCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccc-cceeEEeEEEecC
Q psy8873 422 PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVE-DTELVDGLVFTQK 500 (841)
Q Consensus 422 ~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~-dS~li~G~v~~~~ 500 (841)
|++ +.+.+.++|..|.|++ +.+++++.+|+.+++. ++ .|.|++ |.+.+ +.++++|+.|+++
T Consensus 1 Pv~--~~~~i~~VAtISan~d------~~IG~lIa~a~~~Vg~---~G-----vitvEe--~~~~~t~~~ivEG~~~~~G 62 (97)
T d1ioka3 1 PVN--DSSEVAQVGTISANGE------SFIGQQIAEAMQRVGN---EG-----VITVEE--NKGMETEVEVVERVAKLAG 62 (97)
T ss_dssp CCC--STTTTTHHHHHTTTTC------HHHHHHHHHHHHHHCT---TS-----CCCCEE--CSSSCCEEEEEHHHHTTSS
T ss_pred CCC--CHHHhheeeeeecCCc------hHHHHHHHHHHHHhCC---Cc-----eEEecc--ccchhhhhhHhhhhhhhhc
Confidence 455 6678999999999987 7899999999999985 44 466665 33443 4489999999999
Q ss_pred CCC
Q psy8873 501 SAN 503 (841)
Q Consensus 501 ~~~ 503 (841)
|.+
T Consensus 63 yiS 65 (97)
T d1ioka3 63 GVA 65 (97)
T ss_dssp CEE
T ss_pred ccc
Confidence 854
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.76 E-value=0.0078 Score=49.91 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=40.8
Q ss_pred CceEEEEEcccC-CCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 193 NSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 193 ~~~~~~~~g~~~-~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+..+-+.+|+.. .|..+.+.+.++++.+++|.|.+++|||+++|+|++|
T Consensus 48 ~t~~~ivEG~~~~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e 97 (97)
T d1ioka3 48 ETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 97 (97)
T ss_dssp CCEEEEEHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhhhhhhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence 344456667543 4678999999999999999999999999999999875
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Probab=95.28 E-value=0.023 Score=45.64 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=46.8
Q ss_pred chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCCC
Q psy8873 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKSA 502 (841)
Q Consensus 427 ~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~~ 502 (841)
+++.|.++|..|.|. +.+++|+++|+.+++. +| .|.|+. |... .+.++++|+.+.++++
T Consensus 2 d~~~i~~VAtISAnD-------~~iG~lIAeA~~kVG~---dG-----vItVEe--s~t~~t~levveG~~~~~s~~ 61 (86)
T d1we3a3 2 DRKAIEEVATISAND-------PEVGKLIADAMEKVGK---EG-----IITVEE--SKSLETELKFVGVAVIRVGAA 61 (86)
T ss_dssp SHHHHHHHHHHHHTC-------HHHHHHHHHHHHTTCT---TS-----EEEEEE--CSSSSCEEEEECEEEEEECCS
T ss_pred CHHHHhhheeeecCC-------HHHHHHHHHHHHHcCC---Cc-----eEEEEe--cCCCCeEEEEEEeeeccccee
Confidence 678999999988864 6899999999999986 45 577776 4344 4568999999988753
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.049 Score=45.03 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=39.5
Q ss_pred ceEEEEEccc-CCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 194 SRFVKISGIQ-NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 194 ~~~~~~~g~~-~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+.+-+.+|.. ..|..+.+.+.+.++.++++.+.+++|+|+++|+|+++
T Consensus 49 ~~~~ivEG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e 97 (97)
T d1kp8a3 49 DELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97 (97)
T ss_dssp CEEEEEHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence 3444556643 23678999999999999999999999999999999875
|