Psyllid ID: psy889
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 167 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VYF8 | 301 | 2-methoxy-6-polyprenyl-1, | yes | N/A | 0.718 | 0.398 | 0.433 | 9e-29 | |
| Q5ZLL5 | 311 | 2-methoxy-6-polyprenyl-1, | yes | N/A | 0.688 | 0.369 | 0.396 | 4e-24 | |
| A1UUE1 | 260 | Ubiquinone/menaquinone bi | yes | N/A | 0.628 | 0.403 | 0.438 | 6e-24 | |
| Q0P5A2 | 330 | 2-methoxy-6-polyprenyl-1, | yes | N/A | 0.688 | 0.348 | 0.393 | 7e-24 | |
| Q8FUZ3 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 | |
| A9MCZ2 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 | |
| Q8YDE4 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 | |
| C0RMK3 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 | |
| Q576Q0 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 | |
| Q2YJM4 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.598 | 0.371 | 0.46 | 1e-23 |
| >sp|Q9VYF8|COQ5_DROME 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Drosophila melanogaster GN=coq5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI FR+L Y++ P + HVTV+DIN+ ML+VGE+RA+
Sbjct: 112 GDITFRYLRYLNNQPN---PQQRPSHVTVSDINQHMLNVGEERAK--------------- 153
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
L + +D S T+A+ A+AE+LP S++AYTIAFGIR
Sbjct: 154 -----RLGLTTDQLSNCTVAWQC--------------ADAEKLPFPDASFTAYTIAFGIR 194
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 195 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 231
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Drosophila melanogaster (taxid: 7227) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 1 |
| >sp|Q5ZLL5|COQ5_CHICK 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 83/179 (46%), Gaps = 64/179 (35%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPH------------------------VTVADINRAM 46
GDIAFRFLNYV + L + H V V DIN+ M
Sbjct: 101 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVCDINKEM 160
Query: 47 LDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFL 106
L G+Q+A+ L YS L ++
Sbjct: 161 LKAGKQKAQHL-------------------------GYS---------------EGLSWV 180
Query: 107 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NAEEL + D + YTIAFGIRNVTRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 181 LGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A1UUE1|UBIE_BARBK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 81/155 (52%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR LN K H TV DIN +ML+VG++RA+
Sbjct: 84 GDIAFRILNASRK----------KAHATVLDINHSMLNVGKKRAQ--------------- 118
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ P + F+EANAE+LP S+ AYTIAFGIR
Sbjct: 119 -------------------------INGLAPFIDFVEANAEQLPFSDQSFDAYTIAFGIR 153
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV IDKALSEA+RVLKPGGRFLCLEFS+V +L
Sbjct: 154 NVPHIDKALSEAFRVLKPGGRFLCLEFSNVEMPLL 188
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bartonella bacilliformis (strain ATCC 35685 / KC583) (taxid: 360095) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q0P5A2|COQ5_BOVIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Bos taurus GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 85/178 (47%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------KLPPNTLSEHCA------------PHVTVADINRAML 47
GDIAFRFLNYV + N E A HV V DIN+ ML
Sbjct: 118 GDIAFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCDINKEML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
+G+Q+AR + Y A L ++
Sbjct: 178 KIGKQKAR-------------------------AQGYKA---------------GLAWIL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + + + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN +L
Sbjct: 198 GDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLL 255
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8FUZ3|UBIE_BRUSU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella suis biovar 1 (strain 1330) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella suis biovar 1 (strain 1330) (taxid: 204722) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus biovar 1 (strain 9-941) (taxid: 262698) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus (strain 2308) (taxid: 359391) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 167 | ||||||
| 195396439 | 291 | GJ16746 [Drosophila virilis] gi|19414660 | 0.718 | 0.412 | 0.464 | 2e-31 | |
| 195133400 | 296 | GI16372 [Drosophila mojavensis] gi|19390 | 0.718 | 0.405 | 0.458 | 3e-31 | |
| 157117782 | 293 | ubiquinone/menaquinone biosynthesis meth | 0.706 | 0.402 | 0.477 | 9e-31 | |
| 195048884 | 282 | GH24114 [Drosophila grimshawi] gi|193893 | 0.724 | 0.429 | 0.430 | 9e-30 | |
| 156537862 | 297 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 0.700 | 0.393 | 0.487 | 1e-29 | |
| 194763759 | 302 | GF20959 [Drosophila ananassae] gi|190618 | 0.718 | 0.397 | 0.445 | 3e-29 | |
| 194895617 | 305 | GG19515 [Drosophila erecta] gi|190649947 | 0.712 | 0.390 | 0.455 | 1e-28 | |
| 170028751 | 293 | ubiquinone/menaquinone biosynthesis meth | 0.700 | 0.399 | 0.464 | 1e-28 | |
| 195439310 | 306 | GK16503 [Drosophila willistoni] gi|19416 | 0.718 | 0.392 | 0.426 | 2e-28 | |
| 240848835 | 272 | ubiquinone/menaquinone biosynthesis meth | 0.664 | 0.408 | 0.452 | 3e-28 |
| >gi|195396439|ref|XP_002056839.1| GJ16746 [Drosophila virilis] gi|194146606|gb|EDW62325.1| GJ16746 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR+L Y+ K P E HVTV+DIN+ ML+VG++RAR L
Sbjct: 102 GDISFRYLKYLAKQPNTKQRE---SHVTVSDINQHMLNVGKERARQL------------- 145
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G+ +PN + + A+AE+LP +SDS++AYTIAFGIR
Sbjct: 146 ---------------------GLTAERLPNASIDWQCADAEKLPFKSDSFTAYTIAFGIR 184
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+NN LQW
Sbjct: 185 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLNNETLQW 221
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195133400|ref|XP_002011127.1| GI16372 [Drosophila mojavensis] gi|193907102|gb|EDW05969.1| GI16372 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR+L Y+ K+P E HVTV+DIN+ ML+VGE+RAR L
Sbjct: 107 GDISFRYLKYLAKMPNPKQRE---SHVTVSDINQHMLNVGEERARQL------------- 150
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G+ +PN + + A+AE+LP +SD+Y+AYTIAFGIR
Sbjct: 151 ---------------------GLTADRLPNASIAWQCADAEKLPFKSDTYTAYTIAFGIR 189
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 190 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 226
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157117782|ref|XP_001658935.1| ubiquinone/menaquinone biosynthesis methyltransferase [Aedes aegypti] gi|108884602|gb|EAT48827.1| AAEL000178-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 92/157 (58%), Gaps = 39/157 (24%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+L Y++ PP HVTV+DIN+ ML+VG++R + L
Sbjct: 106 GDIAFRYLKYLNNQPPE--DNQATNHVTVSDINQNMLNVGQERYKRL------------- 150
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
NI N + ++ ANAEELP E +SY+AYTIAFGIR
Sbjct: 151 ------------------------NIKPTNCTVDWVCANAEELPFEDNSYTAYTIAFGIR 186
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVT IDK LSEAYRVLKPGGRF+CLEFSHV+N L+W
Sbjct: 187 NVTHIDKVLSEAYRVLKPGGRFMCLEFSHVSNDYLRW 223
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195048884|ref|XP_001992610.1| GH24114 [Drosophila grimshawi] gi|193893451|gb|EDV92317.1| GH24114 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 37/158 (23%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDI+FR+L Y++K P + + HVT++DIN+ ML+VGE+RAR
Sbjct: 92 TGDISFRYLKYLEKQPNH---QGRKSHVTISDINQHMLNVGEERARQQ------------ 136
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G+ + N + + A+AE+LP +SDS++AYTIAFGI
Sbjct: 137 ----------------------GLTAERLSNSSIDWQCADAEKLPFQSDSFTAYTIAFGI 174
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
RN T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 175 RNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 212
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156537862|ref|XP_001608106.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 95/158 (60%), Gaps = 41/158 (25%)
Query: 11 GDIAFRFLNYV-DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDI FR+L Y+ +K P + HVTV DIN MLDVG+ RA+ R F
Sbjct: 110 GDITFRYLTYLKNKCNPKAIK----SHVTVCDINANMLDVGQVRAK----------RQGF 155
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
N Y IA+ +ANAEELP +S++Y+AYTIAFGI
Sbjct: 156 TVENG------------YDIAW--------------QQANAEELPFDSETYTAYTIAFGI 189
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
RNVTR+DKAL+EAYRVL+PGGRFLCLEFSHV+N +L+W
Sbjct: 190 RNVTRVDKALAEAYRVLRPGGRFLCLEFSHVDNDLLRW 227
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194763759|ref|XP_001964000.1| GF20959 [Drosophila ananassae] gi|190618925|gb|EDV34449.1| GF20959 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 92/157 (58%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR+L Y+ P T HVTV+DIN+ MLDVGE+RAR L
Sbjct: 113 GDISFRYLKYLANQPNPTKR---ISHVTVSDINQHMLDVGEERARRL------------- 156
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G+ + +PN + + A+AE+LP + +S++AYTIAFGIR
Sbjct: 157 ---------------------GLTSDRLPNSSVAWKCADAEKLPFQDESFNAYTIAFGIR 195
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 196 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 232
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194895617|ref|XP_001978298.1| GG19515 [Drosophila erecta] gi|190649947|gb|EDV47225.1| GG19515 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 91/158 (57%), Gaps = 39/158 (24%)
Query: 11 GDIAFRFLNYVDKLP-PNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDI FR+L Y+ P P S HVTV+DIN+ MLDVGE+RA+
Sbjct: 116 GDITFRYLRYLANQPNPQQRS----SHVTVSDINQHMLDVGEERAK-------------- 157
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
L + +D S T+A+ A+AE+LP + S+SAYTIAFGI
Sbjct: 158 ------RLGLTTDQLSNCTVAWQC--------------ADAEKLPFQDASFSAYTIAFGI 197
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
RN T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 198 RNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 235
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170028751|ref|XP_001842258.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Culex quinquefasciatus] gi|167877943|gb|EDS41326.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 92/157 (58%), Gaps = 40/157 (25%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+L Y++ P + + HVTV+DIN+ MLDVG+ R ++L
Sbjct: 107 GDIAFRYLKYLNNQPQDGEQPN---HVTVSDINQNMLDVGQARFKNL------------- 150
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I N + ++ A+AE+LP E +SY+AYTIAFGIR
Sbjct: 151 ------------------------GIQPSNCTVDWVCADAEKLPFEDNSYTAYTIAFGIR 186
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVT ID+ALSEAYRVLKPGGRFLCLEFSHV N L+W
Sbjct: 187 NVTHIDRALSEAYRVLKPGGRFLCLEFSHVTNDYLRW 223
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195439310|ref|XP_002067574.1| GK16503 [Drosophila willistoni] gi|194163659|gb|EDW78560.1| GK16503 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 93/157 (59%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI FR+L Y+ PNT E + HVT++DIN+ ML+VGE+R++ L
Sbjct: 117 GDITFRYLKYLAN-QPNT--EGRSSHVTISDINQHMLNVGEERSKRL------------- 160
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G+ +PN + + A+AE+LP ++D ++AYTIAFG+R
Sbjct: 161 ---------------------GLTTDKLPNLSIDWQCADAEKLPFKNDEFNAYTIAFGVR 199
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 200 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 236
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|240848835|ref|NP_001155605.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE-like [Acyrthosiphon pisum] gi|239788060|dbj|BAH70726.1| ACYPI005028 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 90/157 (57%), Gaps = 46/157 (29%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+LNY+ + + HVT+ADIN +ML+ G++RA
Sbjct: 92 GDIAFRYLNYISDMKGD-------GHVTIADINGSMLEEGKKRAL--------------- 129
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N+ + + ++E +AE LP+ESDSYSAYTIAFGIR
Sbjct: 130 ------------------------NLKLNQDNVSWVECDAENLPMESDSYSAYTIAFGIR 165
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVT IDKAL EAYRVL+PGGRFLCLEFS VN + L+W
Sbjct: 166 NVTHIDKALDEAYRVLEPGGRFLCLEFSQVNPAALRW 202
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 167 | ||||||
| UNIPROTKB|E2RF28 | 327 | COQ5 "Uncharacterized protein" | 0.377 | 0.192 | 0.666 | 3.4e-23 | |
| UNIPROTKB|F1RJK0 | 329 | COQ5 "Uncharacterized protein" | 0.377 | 0.191 | 0.666 | 4.3e-23 | |
| UNIPROTKB|F8VVX6 | 213 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.377 | 0.295 | 0.666 | 4.3e-23 | |
| UNIPROTKB|Q5HYK3 | 327 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.377 | 0.192 | 0.666 | 4.3e-23 | |
| UNIPROTKB|Q0P5A2 | 330 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.377 | 0.190 | 0.666 | 5.4e-23 | |
| UNIPROTKB|F1NBB0 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.820 | 0.440 | 0.420 | 7.8e-23 | |
| UNIPROTKB|F1NXQ7 | 318 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.820 | 0.430 | 0.420 | 7.8e-23 | |
| MGI|MGI:1098643 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.377 | 0.192 | 0.650 | 3.7e-22 | |
| RGD|1310857 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.377 | 0.192 | 0.650 | 3.7e-22 | |
| UNIPROTKB|Q5ZLL5 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.820 | 0.440 | 0.414 | 5.5e-22 |
| UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN
Sbjct: 193 LAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252
Query: 163 SML 165
++
Sbjct: 253 PLI 255
|
|
| UNIPROTKB|F1RJK0 COQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN
Sbjct: 195 LDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVNN 254
Query: 163 SML 165
++
Sbjct: 255 PLV 257
|
|
| UNIPROTKB|F8VVX6 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN
Sbjct: 112 LAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 171
Query: 163 SML 165
++
Sbjct: 172 PLI 174
|
|
| UNIPROTKB|Q5HYK3 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN
Sbjct: 193 LAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252
Query: 163 SML 165
++
Sbjct: 253 PLI 255
|
|
| UNIPROTKB|Q0P5A2 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + + + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN
Sbjct: 193 LAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNN 252
Query: 163 SML 165
+L
Sbjct: 253 PLL 255
|
|
| UNIPROTKB|F1NBB0 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 66/157 (42%), Positives = 93/157 (59%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLR 68
GDIAFRFLNYV + L + H ++ +I+++ E+++ P+ + ++
Sbjct: 101 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQ---EEKSN-----PLGDSQVV 152
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 128
+ N E L ++ A + + + L ++ NAEELP + D + YTIAFG
Sbjct: 153 VCDINKEML--KAGKQRAQHLGY--------SEGLSWVLGNAEELPFDDDKFDVYTIAFG 202
Query: 129 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
IRNVTRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 203 IRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
|
|
| UNIPROTKB|F1NXQ7 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 66/157 (42%), Positives = 93/157 (59%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLR 68
GDIAFRFLNYV + L + H ++ +I+++ E+++ P+ + ++
Sbjct: 108 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQ---EEKSN-----PLGDSQVV 159
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 128
+ N E L ++ A + + + L ++ NAEELP + D + YTIAFG
Sbjct: 160 VCDINKEML--KAGKQRAQHLGY--------SEGLSWVLGNAEELPFDDDKFDVYTIAFG 209
Query: 129 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
IRNVTRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 210 IRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 246
|
|
| MGI|MGI:1098643 Coq5 "coenzyme Q5 homolog, methyltransferase (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + DS+ YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEF VN+
Sbjct: 193 LAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFGQVND 252
Query: 163 SML 165
++
Sbjct: 253 PLI 255
|
|
| RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L ++ +AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VN+
Sbjct: 193 LAWVLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVND 252
Query: 163 SML 165
++
Sbjct: 253 PLI 255
|
|
| UNIPROTKB|Q5ZLL5 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 65/157 (41%), Positives = 92/157 (58%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLR 68
GDIAFRFLNYV + L + H ++ +I+++ E+++ P+ + ++
Sbjct: 101 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQ---EEKSN-----PLGDSQVV 152
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 128
+ N E L ++ A + + + L ++ NAEEL + D + YTIAFG
Sbjct: 153 VCDINKEML--KAGKQKAQHLGY--------SEGLSWVLGNAEELHFDDDKFDVYTIAFG 202
Query: 129 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
IRNVTRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 203 IRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 167 | |||
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 7e-37 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 6e-31 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 2e-30 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 4e-29 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 3e-12 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-12 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 9e-10 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-09 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 4e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 7e-05 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 3e-04 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 4e-04 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.002 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 7e-37
Identities = 50/156 (32%), Positives = 63/156 (40%), Gaps = 50/156 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V K V D + ML VG ++ RDL
Sbjct: 63 GDLAIALAKAVGK----------TGEVVGLDFSEGMLAVGREKLRDLGLSG--------- 103
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ F++ +AE LP +S+ A TIAFG+R
Sbjct: 104 -------------------------------NVEFVQGDAEALPFPDNSFDAVTIAFGLR 132
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 166
NV IDKAL E YRVLKPGGR + LEFS N L+
Sbjct: 133 NVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLK 168
|
Length = 239 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-31
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 52/152 (34%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V V DI+ +ML+V ++ +
Sbjct: 63 GDMALLLAKSVGTG-----------EVVGLDISESMLEVAREKLKK-------------- 97
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G++N+ F+ +AE LP +S+ A TI+FG+R
Sbjct: 98 --------------------KGVQNV-------EFVVGDAENLPFPDNSFDAVTISFGLR 130
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
NVT IDKAL E YRVLKPGGR L LEFS +N
Sbjct: 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162
|
Length = 238 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-30
Identities = 52/156 (33%), Positives = 70/156 (44%), Gaps = 53/156 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A K P+ VT D + ML+V ++++
Sbjct: 51 GDLAIELA----KSAPDRGK------VTGVDFSSEMLEVAKKKSEL-------------- 86
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
L IE F++A+AE LP E +S+ A TIAFG+R
Sbjct: 87 -----PLNIE------------------------FIQADAEALPFEDNSFDAVTIAFGLR 117
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 166
NVT I KAL E YRVLKPGGR + LEFS N++L+
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLK 153
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-29
Identities = 51/155 (32%), Positives = 65/155 (41%), Gaps = 51/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD F + + V DIN ML GE++A++
Sbjct: 59 GDWTFGLSDSAGS----------SGKVVGLDINENMLKEGEKKAKEE------------- 95
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G NI+ FL+ NAEELP E DS+ TI+FG+R
Sbjct: 96 ---------------------GKYNIE-------FLQGNAEELPFEDDSFDIVTISFGLR 127
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
N K L EA+RVLKPGGR +CLEFS N +L
Sbjct: 128 NFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLL 162
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-12
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 43/132 (32%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L+E P HV D + ML VG Q+ +D
Sbjct: 63 LAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----------------------------- 93
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
G+ N+++ + NA ELP + +S+ TI FG+RNV + L E YRV+
Sbjct: 94 -----GLHNVEL-------VHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVV 141
Query: 147 KPGGRFLCLEFS 158
KPGG+ +CLE S
Sbjct: 142 KPGGKVVCLETS 153
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-12
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+F+ +AE+LP +S+ + + ++ ++AL E RVLKPGG+ +
Sbjct: 38 RAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 9e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
+ ++E +A +LP + + A T+ +G+RNV +A+ E YRVLKPG R L+F+ N
Sbjct: 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQ 87
Query: 163 SM 164
S+
Sbjct: 88 SV 89
|
Length = 160 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-09
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
+ ++E +A +LP + + A T+ +G+RNV KA+ E YRVLKPG R L+F+
Sbjct: 129 IEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188
Query: 163 ----SMLQW 167
SM +W
Sbjct: 189 PFTTSMQEW 197
|
Length = 261 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-06
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
P + F+ +A+ LP S+ A ++++ +AL+E RVL+PGGR + L+
Sbjct: 68 GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125
|
Length = 241 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 101 PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
+ F++ + EELP +E +S+ + ++ DK L E RVLKPGG + +
Sbjct: 54 ENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
Query: 158 SHVNN 162
++
Sbjct: 114 VLLSE 118
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-05
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALS 140
S + + P++RF+ A+A +LP E S+ A + ++ L
Sbjct: 28 ISKEALELAKERLRDKGPKVRFVVADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLR 87
Query: 141 EAYRVLKPGG 150
EA R+L+PGG
Sbjct: 88 EAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 2e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 100 NPRLRFLEANAEELPIESD-SYS-AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ L+ +AEELP E+D S+ + V + + L EA R+LKPGG +
Sbjct: 46 ADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 105 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRF 152
F E LP+ +S I I N ++ EA+RVLKPGGRF
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRF 179
|
Length = 272 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 104 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
+ +E +AE+LP +D Y A I + + EAYRVLK GG+
Sbjct: 163 KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
|
Length = 340 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG 92
VT DI++ L++ ++R RD P++RF+ A+A +LP E S+ A
Sbjct: 21 SSVTGVDISKEALELAKERLRD------KGPKVRFVVADARDLPFEEGSFDLVICAGL 72
|
This family appears to be a methyltransferase domain. Length = 97 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 167 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| KOG1540|consensus | 296 | 99.89 | ||
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.77 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.75 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.75 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.72 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.69 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.68 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.68 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.67 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.66 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.63 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.63 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.63 | |
| KOG1270|consensus | 282 | 99.63 | ||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.63 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.63 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.61 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.61 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.6 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.59 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.59 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.58 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.57 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.57 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.57 | |
| KOG4300|consensus | 252 | 99.56 | ||
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.56 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.56 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.55 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.54 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.5 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.48 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.47 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.46 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.46 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.45 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.44 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.43 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.42 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.41 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.4 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.4 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.39 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.38 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.38 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.37 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.37 | |
| KOG1271|consensus | 227 | 99.36 | ||
| KOG2899|consensus | 288 | 99.34 | ||
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.34 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.34 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.34 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.34 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.32 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.32 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.32 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.31 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.31 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| KOG2361|consensus | 264 | 99.31 | ||
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.31 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.3 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.3 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.3 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.3 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.29 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.27 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.27 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.27 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.24 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.24 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.22 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.2 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.19 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.19 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.17 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.17 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.16 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.15 | |
| KOG1541|consensus | 270 | 99.15 | ||
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.15 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.14 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.13 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.11 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.11 | |
| KOG3010|consensus | 261 | 99.11 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.11 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.1 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.08 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.07 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.07 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.06 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.06 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.04 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.03 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.99 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.99 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.99 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.98 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.97 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.96 | |
| KOG1975|consensus | 389 | 98.96 | ||
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.93 | |
| KOG2940|consensus | 325 | 98.92 | ||
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.92 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.91 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.91 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.91 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.89 | |
| PLN02476 | 278 | O-methyltransferase | 98.89 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.85 | |
| PLN02366 | 308 | spermidine synthase | 98.85 | |
| KOG2904|consensus | 328 | 98.84 | ||
| PLN02672 | 1082 | methionine S-methyltransferase | 98.82 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.81 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.8 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.79 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.79 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.78 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.77 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.77 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.76 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.75 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.74 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.69 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.6 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.57 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.56 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.55 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.54 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.54 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.53 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.53 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.53 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.48 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.46 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.46 | |
| KOG1499|consensus | 346 | 98.46 | ||
| KOG3420|consensus | 185 | 98.46 | ||
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.46 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.46 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.46 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.44 | |
| PLN02823 | 336 | spermine synthase | 98.44 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.44 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.42 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.42 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.41 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.41 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.39 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.39 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.38 | |
| KOG1269|consensus | 364 | 98.35 | ||
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.34 | |
| KOG3045|consensus | 325 | 98.33 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.33 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.31 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.3 | |
| KOG3191|consensus | 209 | 98.29 | ||
| KOG1661|consensus | 237 | 98.29 | ||
| KOG3987|consensus | 288 | 98.29 | ||
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.28 | |
| KOG1663|consensus | 237 | 98.25 | ||
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.24 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.19 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.16 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.16 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.14 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.14 | |
| KOG3178|consensus | 342 | 98.12 | ||
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.11 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.08 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.04 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.01 | |
| KOG1500|consensus | 517 | 98.0 | ||
| KOG1122|consensus | 460 | 97.99 | ||
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.93 | |
| KOG1331|consensus | 293 | 97.93 | ||
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.88 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.85 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.85 | |
| KOG2352|consensus | 482 | 97.84 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.84 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.82 | |
| KOG2915|consensus | 314 | 97.8 | ||
| PRK04148 | 134 | hypothetical protein; Provisional | 97.78 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.76 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.75 | |
| KOG0820|consensus | 315 | 97.74 | ||
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.7 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.68 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.63 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.61 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.55 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.54 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.44 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 97.4 | |
| KOG2798|consensus | 369 | 97.39 | ||
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.38 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.35 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.34 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.32 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.3 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 97.29 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.23 | |
| KOG3115|consensus | 249 | 97.23 | ||
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.21 | |
| KOG2187|consensus | 534 | 97.17 | ||
| KOG2730|consensus | 263 | 97.11 | ||
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.1 | |
| KOG1540|consensus | 296 | 97.07 | ||
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.05 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.04 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.97 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.87 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.82 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.74 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.71 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.61 | |
| KOG2198|consensus | 375 | 96.51 | ||
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.39 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.36 | |
| KOG1709|consensus | 271 | 96.3 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.07 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.0 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.99 | |
| KOG3201|consensus | 201 | 95.97 | ||
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.69 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.54 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.53 | |
| KOG4589|consensus | 232 | 95.52 | ||
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.52 | |
| KOG2793|consensus | 248 | 95.17 | ||
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.12 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.05 | |
| KOG0822|consensus | 649 | 94.98 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.97 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 94.94 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 94.9 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.49 | |
| KOG1501|consensus | 636 | 94.47 | ||
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.44 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.85 | |
| KOG2539|consensus | 491 | 93.35 | ||
| KOG2920|consensus | 282 | 93.2 | ||
| KOG1562|consensus | 337 | 92.86 | ||
| KOG1227|consensus | 351 | 92.84 | ||
| KOG4058|consensus | 199 | 92.72 | ||
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.68 | |
| PHA01634 | 156 | hypothetical protein | 92.41 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 92.13 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.59 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.42 | |
| KOG1099|consensus | 294 | 91.28 | ||
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.27 | |
| KOG2651|consensus | 476 | 91.17 | ||
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.13 | |
| KOG1253|consensus | 525 | 91.09 | ||
| KOG2671|consensus | 421 | 91.0 | ||
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 90.87 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.78 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 90.62 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.37 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.03 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.66 | |
| KOG0024|consensus | 354 | 88.27 | ||
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.11 | |
| KOG1596|consensus | 317 | 87.44 | ||
| PTZ00357 | 1072 | methyltransferase; Provisional | 87.3 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 85.23 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 85.03 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 84.81 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.0 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 83.11 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 82.65 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 82.52 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 82.41 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.04 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 81.54 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 80.1 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 80.02 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=166.03 Aligned_cols=113 Identities=42% Similarity=0.637 Sum_probs=104.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||||.++..+++..+ .++++++|+|+.|++.++++....+.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-----------~g~v~~~D~s~~ML~~a~~k~~~~~~--------------------- 100 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-----------TGEVVGLDISESMLEVAREKLKKKGV--------------------- 100 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-----------CceEEEEECCHHHHHHHHHHhhccCc---------------------
Confidence 5799999999999999999874 68999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..+.|+.+|++++|+++.+||+|.++++++++++++++|+|++|+|||||++++.+++.|
T Consensus 101 --------------------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 101 --------------------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred --------------------cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 348889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccC
Q psy889 161 NNSML 165 (167)
Q Consensus 161 ~~~~~ 165 (167)
.++++
T Consensus 161 ~~~~~ 165 (238)
T COG2226 161 DNPVL 165 (238)
T ss_pred Cchhh
Confidence 88765
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=161.56 Aligned_cols=115 Identities=35% Similarity=0.549 Sum_probs=92.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++++|+|+.|++.++++....+.
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~----------~~~~v~~vD~s~~ML~~a~~k~~~~~~--------------------- 97 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVG----------PNGKVVGVDISPGMLEVARKKLKREGL--------------------- 97 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS-------------EEEEEES-HHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEeCCChHHHHHHHHHHCC----------CccEEEEecCCHHHHHHHHHHHHhhCC---------------------
Confidence 3799999999999999998764 367999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.++++|.+++|+++++||.|+|+++++++++..+++++++|+|||||.++++|++.|
T Consensus 98 --------------------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 98 --------------------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp ---------------------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred --------------------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCC
Q psy889 161 NNSMLQ 166 (167)
Q Consensus 161 ~~~~~~ 166 (167)
.+++++
T Consensus 158 ~~~~~~ 163 (233)
T PF01209_consen 158 RNPLLR 163 (233)
T ss_dssp SSHHHH
T ss_pred CCchhh
Confidence 987653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=156.31 Aligned_cols=124 Identities=55% Similarity=0.815 Sum_probs=96.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|++||+|||||.+++.++++...- ...+..+++++|+|++|+..++++....+. -+.
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~-----~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~---------------- 158 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQ-----FGDRESKVTVLDINPHMLAVGKQRAKKRPL--KAS---------------- 158 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccc-----cCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcC----------------
Confidence 799999999999999999998511 012468999999999999999999865443 111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.++++|++++|+++.+||.+++.+.+.++++++++++++||+|||||+|++.+|++.
T Consensus 159 --------------------~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 159 --------------------SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred --------------------CceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 234555555555666666666666666666688999999999999999999999999999
Q ss_pred CCccCCC
Q psy889 161 NNSMLQW 167 (167)
Q Consensus 161 ~~~~~~~ 167 (167)
+++.++|
T Consensus 219 ~~~~l~~ 225 (296)
T KOG1540|consen 219 ENEPLKW 225 (296)
T ss_pred ccHHHHH
Confidence 9887765
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=141.66 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=96.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++|+|+|+.|++.|+++.......
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~----------~~~~V~gvD~S~~ml~~A~~r~~~~~~~-------------------- 124 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVG----------SDGKVMGLDFSSEQLAVAASRQELKAKS-------------------- 124 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHhhhhhhc--------------------
Confidence 3799999999999999888653 2468999999999999999875421100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
...++.+...|.+++++.+++||+|++..+++++++...++++++|+|||||++++.++..+
T Consensus 125 ------------------~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 125 ------------------CYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ------------------cCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 01467888899988998889999999999999999999999999999999999999999877
Q ss_pred CCc
Q psy889 161 NNS 163 (167)
Q Consensus 161 ~~~ 163 (167)
+.+
T Consensus 187 ~~~ 189 (261)
T PLN02233 187 TQP 189 (261)
T ss_pred CcH
Confidence 643
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=115.37 Aligned_cols=95 Identities=29% Similarity=0.428 Sum_probs=82.2
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|||+|..+..++++ . +.+++++|+++.+++.++++....
T Consensus 1 LdiG~G~G~~~~~l~~~-~-----------~~~v~~~D~~~~~~~~~~~~~~~~-------------------------- 42 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-----------GASVTGIDISEEMLEQARKRLKNE-------------------------- 42 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-----------TCEEEEEES-HHHHHHHHHHTTTS--------------------------
T ss_pred CEecCcCCHHHHHHHhc-c-----------CCEEEEEeCCHHHHHHHHhccccc--------------------------
Confidence 89999999999999986 2 788999999999999999887532
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
++.+...+...+++++++||+|++..+++++++..+++++++|+|||||++++
T Consensus 43 ------------------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 43 ------------------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------------TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------CchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 34588889999999999999999999999999999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=122.30 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=92.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ++.+++|+|+|+.+++.|+++++..+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~----------~~~~i~gvD~s~~~i~~a~~~~~~~~~--------------------- 53 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELN----------PGAKIIGVDISEEMIEYAKKRAKELGL--------------------- 53 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHST----------TTSEEEEEESSHHHHHHHHHHHHHTTS---------------------
T ss_pred CEEEEecCcCcHHHHHHHHhcC----------CCCEEEEEECcHHHHHHhhcccccccc---------------------
Confidence 4899999999999999996442 478899999999999999999887776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+++ +. ..||+|++..+++++.+...+++++++.|++||.+++.+..
T Consensus 54 --------------------~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 54 --------------------DNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --------------------TTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------cccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 57888888888865 44 78999999999999999999999999999999999998876
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-18 Score=136.33 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=95.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+ +.+++|+|+|+.+++.++++....+.
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~------------g~~v~gvD~s~~~i~~a~~~~~~~g~--------------------- 166 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKY------------GANVKGITLSPVQAARANALAAAQGL--------------------- 166 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999998865 57899999999999999988765543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..+.++.+++||+|++..+++++++...++++++++|||||.+++.++++.
T Consensus 167 -------------------~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~ 227 (340)
T PLN02244 167 -------------------SDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHR 227 (340)
T ss_pred -------------------CCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 1468888888888888889999999999999999999999999999999999999988754
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=131.68 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=92.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||.|.++..+++ .+..++|+|.++.+++.|+.+....+.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr-------------~Ga~VtgiD~se~~I~~Ak~ha~e~gv--------------------- 106 (243)
T COG2227 61 LRVLDVGCGGGILSEPLAR-------------LGASVTGIDASEKPIEVAKLHALESGV--------------------- 106 (243)
T ss_pred CeEEEecCCccHhhHHHHH-------------CCCeeEEecCChHHHHHHHHhhhhccc---------------------
Confidence 5899999999999999998 478999999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.+.|.+...+++....++||+|+|.-+++|+++++.+++.+.+++||||.+++++++..
T Consensus 107 ---------------------~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 107 ---------------------NIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ---------------------cccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 45677776666665558999999999999999999999999999999999999988754
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 166 ~ 166 (243)
T COG2227 166 L 166 (243)
T ss_pred H
Confidence 3
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=128.33 Aligned_cols=112 Identities=34% Similarity=0.493 Sum_probs=95.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... +..+++++|+++.+++.++++......
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 95 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG----------PEGHVIGLDFSENMLSVGRQKVKDAGL--------------------- 95 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 4799999999999999998763 357899999999999999998865443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++.+++||+|++..+++++++...++++++++|+|||.+++.+.+.+
T Consensus 96 --------------------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 96 --------------------HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred --------------------CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 457777777777777778899999998899999999999999999999999999887766
Q ss_pred CCc
Q psy889 161 NNS 163 (167)
Q Consensus 161 ~~~ 163 (167)
+.+
T Consensus 156 ~~~ 158 (231)
T TIGR02752 156 TIP 158 (231)
T ss_pred CCh
Confidence 543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=112.77 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++......
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 50 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-----------PGARVVGVDISPEMLEIARERAAEEGL--------------------- 50 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-----------TTSEEEEEESSHHHHHHHHHHHHHTTT---------------------
T ss_pred CEEEEEcCcCCHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 389999999999999999966 488999999999999999999854433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-ccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..........||+|++.. .++++ .+.+++++++++.|+|||++++.+
T Consensus 51 -------------------~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 51 -------------------SDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------TTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2578888888811222235599999988 44323 456889999999999999999865
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=132.26 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=90.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++ .+.+++|+|.++.+++.|+++......
T Consensus 134 ~ILDIGCG~G~~s~~La~-------------~g~~V~GID~s~~~i~~Ar~~~~~~~~---------------------- 178 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLAR-------------MGATVTGVDAVDKNVKIARLHADMDPV---------------------- 178 (322)
T ss_pred EEEEeeCCCCHHHHHHHH-------------cCCEEEEEeCCHHHHHHHHHHHHhcCc----------------------
Confidence 799999999999998876 367899999999999999987643221
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...+.++++..+++||+|++..+++|+++...++++++++|||||.+++.+++.
T Consensus 179 ------------------~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 179 ------------------TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred ------------------ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 135778888888777777889999999999999999999999999999999999987654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-17 Score=125.66 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=89.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++++|+|+.+++.|+++....+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~-------------~g~~v~~vD~s~~~l~~a~~~~~~~g~--------------------- 91 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAE-------------LGHQVILCDLSAEMIQRAKQAAEAKGV--------------------- 91 (255)
T ss_pred CEEEEeCCCchHHHHHHHH-------------cCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999987 367899999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.++..+..++. ..+.+||+|++..+++++.+...++++++++|||||+++++.++.
T Consensus 92 -------------------~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 92 -------------------SDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred -------------------ccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 135677777766543 446789999999999999999999999999999999999876653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=124.25 Aligned_cols=108 Identities=25% Similarity=0.243 Sum_probs=92.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++....+.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g----------~~~~v~gvD~s~~~l~~A~~~~~~~g~--------------------- 127 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVG----------PTGKVIGVDMTPEMLAKARANARKAGY--------------------- 127 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEECCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999998888777653 356899999999999999998776554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+.+.+++.+++||+|+++.++++.++...++++++++|||||++++.++..
T Consensus 128 --------------------~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 128 --------------------TNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred --------------------CCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 45777778888777777899999999999999999999999999999999999987653
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=124.14 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=88.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++++|+|+.+++.++++... .
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~------------~~~v~giD~s~~~~~~a~~~~~~--~--------------------- 98 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY------------GAHVHGVDICEKMVNIAKLRNSD--K--------------------- 98 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc------------CCEEEEEECCHHHHHHHHHHcCc--C---------------------
Confidence 479999999999999887643 57899999999999999987642 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....++++++||+|++..++++++ +...++++++++|||||++++.++.
T Consensus 99 --------------------~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 99 --------------------NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --------------------CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 357777888877777788999999987776664 7889999999999999999999886
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 159 ~~~ 161 (263)
T PTZ00098 159 ADK 161 (263)
T ss_pred ccc
Confidence 544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-18 Score=114.57 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=65.2
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|||+|.++..+++++ +..+++++|+|+.|++.+++++.....
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------~~~~~~~~D~s~~~l~~a~~~~~~~~~------------------------ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------PDARYTGVDISPSMLERARERLAELGN------------------------ 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------EEEEEEEESSSSTTSTTCCCHHHCT-------------------------
T ss_pred CEeCccChHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHhhhcCC------------------------
Confidence 799999999999999987 378999999999999999888876543
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEE
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.+.........+.. ....+||+|++..+++++++++.++++++++|+|||.|
T Consensus 46 -----------------~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 46 -----------------DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -----------------cceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 22233333222221 11258999999999999999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=123.76 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.++++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~-----------p~~~v~gvD~s~~~~~~a~~~--------------------------- 72 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRW-----------PGAVIEALDSSPEMVAAARER--------------------------- 72 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHhc---------------------------
Confidence 379999999999999998876 367899999999999998752
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++.+...|.+.++ .+++||+|+++.+++++++...++++++++|||||.+++....
T Consensus 73 ---------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 73 ---------------------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred ---------------------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2445566666553 3568999999999999999999999999999999999986543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=124.31 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=85.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++. .+.+++++|+|+.+++.++++..
T Consensus 45 ~vLDiGcG~G~~~~~l~~-------------~~~~v~~~D~s~~~l~~a~~~~~-------------------------- 85 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRE-------------RGSQVTALDLSPPMLAQARQKDA-------------------------- 85 (251)
T ss_pred eEEEeeCCCCHHHHHHHH-------------cCCeEEEEECCHHHHHHHHhhCC--------------------------
Confidence 799999999999888865 36789999999999999987632
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...+...|.+.+++.+.+||+|+++.+++|.++...++++++++|+|||.+++..+....
T Consensus 86 --------------------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 86 --------------------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred --------------------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 134566777777777788999999999999999999999999999999999998877543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=117.65 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ .+.+++++|+|+.+++.++++....+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~-------------~g~~V~gvD~S~~~i~~a~~~~~~~~~--------------------- 77 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAA-------------NGFDVTAWDKNPMSIANLERIKAAENL--------------------- 77 (197)
T ss_pred CcEEEECCCCCHHHHHHHH-------------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999987 367899999999999999988766544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|....++ .+.||+|++..++++++ +...++++++++|+|||++++.++
T Consensus 78 --------------------~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 78 --------------------DNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred --------------------CcceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 345666667666555 35699999998887664 578999999999999999765443
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=123.19 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=84.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +.+++|+|+|++|++.++++.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~------------~~~v~gvD~S~~Ml~~a~~~~--------------------------- 94 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVF------------KYYVVALDYAENMLKMNLVAD--------------------------- 94 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhc------------CCEEEEECCCHHHHHHHHhcc---------------------------
Confidence 79999999999999998754 468999999999999987531
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.+...+.+.+|+.+++||+|++..+++++++..+++++++|+||| .+.+++++.|+
T Consensus 95 ----------------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp--~~~ile~~~p~ 150 (226)
T PRK05785 95 ----------------------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK--QVGFIAMGKPD 150 (226)
T ss_pred ----------------------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC--ceEEEEeCCCC
Confidence 124567777888889999999999999999999999999999999 34466888887
Q ss_pred CccC
Q psy889 162 NSML 165 (167)
Q Consensus 162 ~~~~ 165 (167)
+.+.
T Consensus 151 ~~~~ 154 (226)
T PRK05785 151 NVIK 154 (226)
T ss_pred cHHH
Confidence 6543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=130.49 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=91.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++|+|+|+.+++.|+++.....
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvDiS~~~l~~A~~~~~~~~---------------------- 313 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENF------------DVHVVGIDLSVNMISFALERAIGRK---------------------- 313 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHhhcCC----------------------
Confidence 379999999999999888755 5689999999999999987764221
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++++++||+|++..+++++++..+++++++++|||||.+++.++...
T Consensus 314 --------------------~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 314 --------------------CSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred --------------------CceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 357788888877777778899999999999999999999999999999999999987654
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 374 ~ 374 (475)
T PLN02336 374 P 374 (475)
T ss_pred C
Confidence 3
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=119.33 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=88.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+.. ++.+++++|+|+.|++.+++++...+.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~---------~~~~v~gvD~S~~ml~~A~~~~~~~~~--------------------- 107 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKA--------------------- 107 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999988874311 368999999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...+....+.. .+|+|+++.++++++. ...++++++++|||||.|++.+..
T Consensus 108 -------------------~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 108 -------------------PTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -------------------CCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 13677888887776653 4899999988887754 568899999999999999998855
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
..++
T Consensus 167 ~~~~ 170 (247)
T PRK15451 167 SFED 170 (247)
T ss_pred CCCc
Confidence 4443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=115.51 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ..+++|+|+|+.+++.+++++...+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-----------~~~v~gid~s~~~~~~a~~~~~~~gl--------------------- 48 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-----------HLQLHGYTISPEQAEVGRERIRALGL--------------------- 48 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999988762 57899999999999999998876544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|....+. .++||+|++..+++++++...+|++++++|+|||++++.++.
T Consensus 49 -------------------~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 49 -------------------QGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------------------CcceEEEecccccCCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 1456777777655444 357999999999999999999999999999999999998864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=116.54 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=88.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+.. ++.+++|+|+|+.|++.|++++.....
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~---------p~~~v~gvD~s~~ml~~a~~~~~~~~~--------------------- 104 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQ---------PNVKIIGIDNSQPMVERCRQHIAAYHS--------------------- 104 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999999886521 368899999999999999998865432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|....+.. .+|+|++..++++++ +...++++++++|+|||.+++.+..
T Consensus 105 -------------------~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 105 -------------------EIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred -------------------CCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 13567778888776653 489999988888875 4578999999999999999998865
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 164 ~~~ 166 (239)
T TIGR00740 164 RFE 166 (239)
T ss_pred cCC
Confidence 443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=112.62 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=85.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +..+++++|+++.+++.++++.+..+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~-----------~~~~V~giD~s~~~l~~A~~~~~~~~l--------------------- 94 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR-----------PELKVTLVDSLGKKIAFLREVAAELGL--------------------- 94 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC-----------CCCeEEEEeCcHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999998865 378999999999999999999887664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+..+.+. ..+||+|++.. +.+...++++++++|+|||.+++.....
T Consensus 95 --------------------~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 95 --------------------KNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred --------------------CCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 347777887777655 66899999864 4567889999999999999999976543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=113.53 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ .+.+++++|+|+.+++.++++....+.
T Consensus 32 ~~vLDiGcG~G~~a~~la~-------------~g~~V~~iD~s~~~l~~a~~~~~~~~~--------------------- 77 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSL-------------AGYDVRAWDHNPASIASVLDMKARENL--------------------- 77 (195)
T ss_pred CcEEEeCCCCCHHHHHHHH-------------CCCeEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 3799999999999999987 367899999999999999987764432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++.+...+....+. +++||+|+++.++++++ +...++++++++|+|||++++.++.
T Consensus 78 ---------------------~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 78 ---------------------PLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred ---------------------CceeEeccchhccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 23444445443333 35799999988888763 5678999999999999997766543
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-16 Score=118.91 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=85.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|+|||+|||+|-++..+++ .++.++|+|.++.+++.|++....... .+..
T Consensus 91 ~~ilDvGCGgGLLSepLAr-------------lga~V~GID~s~~~V~vA~~h~~~dP~---~~~~-------------- 140 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR-------------LGAQVTGIDASDDMVEVANEHKKMDPV---LEGA-------------- 140 (282)
T ss_pred ceEEEeccCccccchhhHh-------------hCCeeEeecccHHHHHHHHHhhhcCch---hccc--------------
Confidence 5799999999999999998 368899999999999999998322111 0000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..-++.+...+.+... +.||.|+|+-+++|+.++..++..+.+.|||||.+++++++..
T Consensus 141 ------------------~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 141 ------------------IAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ------------------cceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 0012445555555543 4499999999999999999999999999999999999987764
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=122.60 Aligned_cols=105 Identities=27% Similarity=0.307 Sum_probs=89.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ..+++++|.|+.+++.++++...
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-----------~~~VtgVD~S~~mL~~A~~k~~~------------------------ 159 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQSPHQLAKAKQKEPL------------------------ 159 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhhhc------------------------
Confidence 4799999999999999988763 57899999999999999986531
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|.+..++.+++||+|++..+++++++..+++++++++|+|||.+++.+...+
T Consensus 160 --------------------~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 160 --------------------KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred --------------------cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 245677788887787788899999999999999999999999999999999998765443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=115.96 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=88.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|+++.++..++++..
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~-------------------------- 79 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRF-----------PQAEFIALDISAGMLAQAKTKLS-------------------------- 79 (240)
T ss_pred eEEEECCCccHHHHHHHHhC-----------CCCcEEEEeChHHHHHHHHHhcC--------------------------
Confidence 79999999999999998876 36779999999999999887643
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++.+.+||+|++..++++..+...++++++++|+|||.+++.++...
T Consensus 80 -------------------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 80 -------------------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred -------------------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 235666777777777778899999999999999999999999999999999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=117.67 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++.
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~-----------~~~~v~gvD~s~~~i~~a~~~~-------------------------- 75 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERW-----------PAARITGIDSSPAMLAEARSRL-------------------------- 75 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHhC--------------------------
Confidence 379999999999999998876 3678999999999999998764
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|..... ...+||+|+++.+++++++...++++++++|||||.+++..
T Consensus 76 --------------------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 76 --------------------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred --------------------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 23455556655443 33589999999999999999999999999999999998853
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-16 Score=104.88 Aligned_cols=98 Identities=23% Similarity=0.427 Sum_probs=76.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
|||+|||+|..+..+.+.++. . +..+++++|+|+.|++.++++....+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~-------~~~~~~gvD~s~~~l~~~~~~~~~~~------------------------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-G-------PSSRVIGVDISPEMLELAKKRFSEDG------------------------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------SEEEEEES-HHHHHHHHHHSHHTT------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhh-c-------ccceEEEEECCHHHHHHHHHhchhcC------------------------
Confidence 799999999999999987621 0 13789999999999999999886533
Q ss_pred CCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccc--cHHHHHHHHHHhcCCCc
Q psy889 83 SYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
.++.+.+.|..+++...++||+|++. .+++++. +..++++++.++|+|||
T Consensus 49 ------------------~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 ------------------PKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------TTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35778888888877777899999994 4477665 47899999999999998
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=119.69 Aligned_cols=105 Identities=19% Similarity=0.096 Sum_probs=85.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ...++|+|.|+.++..++........
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g------------~~~V~GiD~S~~~l~q~~a~~~~~~~--------------------- 170 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG------------AKLVVGIDPSQLFLCQFEAVRKLLGN--------------------- 170 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999998854 34699999999998766544322211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...+.++++. .+.||+|+|..+++|..+...+|+++++.|+|||.+++.++.
T Consensus 171 -------------------~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 171 -------------------DQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -------------------CCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 1357788888888877 678999999999999999999999999999999999986543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=116.73 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=83.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||.|.++..+++.. +.+++|+++|+...+.+++++...+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~------------g~~v~gitlS~~Q~~~a~~~~~~~gl--------------------- 110 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERY------------GCHVTGITLSEEQAEYARERIREAGL--------------------- 110 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--------------EEEEEES-HHHHHHHHHHHHCSTS---------------------
T ss_pred CEEEEeCCCccHHHHHHHHHc------------CcEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 589999999999999999987 78999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+++. +||.|++..++.++ .+....|++++++|+|||.+++..++
T Consensus 111 -------------------~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 111 -------------------EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -------------------SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -------------------CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2467777787766543 79999999888888 56789999999999999999987776
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 169 ~~~ 171 (273)
T PF02353_consen 169 HRD 171 (273)
T ss_dssp E--
T ss_pred ccc
Confidence 554
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=111.63 Aligned_cols=112 Identities=44% Similarity=0.643 Sum_probs=93.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++......
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------------- 101 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG----------KTGEVVGLDFSEGMLAVGREKLRDLGL--------------------- 101 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC----------CCCeEEEEeCCHHHHHHHHHhhccccc---------------------
Confidence 4899999999999999988762 257899999999999999988754322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|....+...+.||+|++..++++..+...+++++.++|+|||.+++.++..+
T Consensus 102 -------------------~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 102 -------------------SGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred -------------------ccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 1356677777776666667899999999999999999999999999999999999888766
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
..
T Consensus 163 ~~ 164 (239)
T PRK00216 163 TN 164 (239)
T ss_pred Cc
Confidence 54
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-15 Score=111.66 Aligned_cols=105 Identities=30% Similarity=0.391 Sum_probs=88.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. +..+++++|+++.+++.++++.....
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~----------~~~~v~~~d~~~~~~~~a~~~~~~~~---------------------- 68 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG----------PEGRVVGIDRSEAMLALAKERAAGLG---------------------- 68 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC----------CCcEEEEEeCCHHHHHHHHHHhhCCC----------------------
Confidence 4799999999999999998763 25789999999999999998732211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|....++..+.||+|++..+++++++...++++++++|+|||.+++.+.
T Consensus 69 --------------------~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 69 --------------------PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred --------------------CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 356777777777777778899999999999999999999999999999999998774
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-15 Score=108.58 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... +..+++++|.|+.+++.++++.+..+.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~-----------~~~~V~~iD~s~~~~~~a~~~~~~~~~--------------------- 91 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIAR-----------PELKLTLLESNHKKVAFLREVKAELGL--------------------- 91 (181)
T ss_pred CeEEEecCCCCccHHHHHHHC-----------CCCeEEEEeCcHHHHHHHHHHHHHhCC---------------------
Confidence 479999999999999988655 367899999999999999988876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.++..+.+++. ..++||+|++.. +.+....++.++++|+|||.+++..
T Consensus 92 --------------------~~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 92 --------------------NNVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --------------------CCeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 35777788777653 356899998865 4456678888999999999999854
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-15 Score=114.60 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=95.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|+|||+|||.|.++..+++.+ +.+++|+++|+++.+.+++++...+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y------------~v~V~GvTlS~~Q~~~~~~r~~~~gl--------------------- 120 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY------------GVTVVGVTLSEEQLAYAEKRIAARGL--------------------- 120 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc------------CCEEEEeeCCHHHHHHHHHHHHHcCC---------------------
Confidence 799999999999999999987 68999999999999999999988776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|...+.- .||-|++..+++++.. .+..|+.++++|+|||.+++..+.
T Consensus 121 -------------------~~~v~v~l~d~rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 121 -------------------EDNVEVRLQDYRDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -------------------CcccEEEecccccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 1468888888777643 3999999999988765 899999999999999999999998
Q ss_pred ccCCcc
Q psy889 159 HVNNSM 164 (167)
Q Consensus 159 ~~~~~~ 164 (167)
.++.+.
T Consensus 179 ~~~~~~ 184 (283)
T COG2230 179 GPDQEF 184 (283)
T ss_pred CCCccc
Confidence 887543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-15 Score=117.15 Aligned_cols=104 Identities=15% Similarity=-0.034 Sum_probs=81.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ...++|+|.|+.|+..++........
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g------------~~~v~GiDpS~~ml~q~~~~~~~~~~--------------------- 169 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG------------AKSLVGIDPTVLFLCQFEAVRKLLDN--------------------- 169 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHHhcc---------------------
Confidence 479999999999998887643 34699999999998876433221111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...+.++++.. ..||+|+|..+++|.+++..+|++++++|||||.|++.++
T Consensus 170 -------------------~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 170 -------------------DKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -------------------CCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 03456666666666543 4799999999999999999999999999999999998654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=115.59 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=80.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++. .+.+++++|+|+.+++.++++....+.
T Consensus 123 ~vLDlGcG~G~~~~~la~-------------~g~~V~avD~s~~ai~~~~~~~~~~~l---------------------- 167 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL-------------LGFDVTAVDINQQSLENLQEIAEKENL---------------------- 167 (287)
T ss_pred CEEEeCCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 699999999999999987 367899999999999999988765432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
++.+...|...... +++||+|++..++++++ +...++++++++|+|||++++++
T Consensus 168 --------------------~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 168 --------------------NIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred --------------------ceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 35555555554433 57899999998888764 57889999999999999977654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-15 Score=107.82 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=76.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+.+ .+.+++++|+++.+++. ..
T Consensus 24 ~~vLDiGcG~G~~~~~l~~-------------~~~~~~g~D~~~~~~~~-------~~---------------------- 61 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAK-------------RGFEVTGVDISPQMIEK-------RN---------------------- 61 (161)
T ss_dssp SEEEEESSTTSHHHHHHHH-------------TTSEEEEEESSHHHHHH-------TT----------------------
T ss_pred CEEEEEcCCCCHHHHHHHH-------------hCCEEEEEECCHHHHhh-------hh----------------------
Confidence 4899999999999999866 35689999999999888 10
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
......+.......+++||+|+|..+++++++...++++++++|||||++++.+...
T Consensus 62 ----------------------~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 62 ----------------------VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----------------------SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----------------------hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 111111222333456789999999999999999999999999999999999988775
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=125.17 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=82.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.++++....+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-----------P~~kVtGIDIS~~MLe~Ararl~~~g---------------------- 466 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-----------EDKRIYGIDISENVIDTLKKKKQNEG---------------------- 466 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHhhhcC----------------------
Confidence 479999999999999988876 37899999999999999998764322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhccccc-------------ccHHHHHHHHHHh
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-------------TRIDKALSEAYRV 145 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~-------------~~~~~~l~~~~~~ 145 (167)
.++.+..+|..+++ +.+++||+|+++.++|++ .+..+++++++++
T Consensus 467 --------------------~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV 526 (677)
T PRK06922 467 --------------------RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV 526 (677)
T ss_pred --------------------CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 23455556655554 556678888777666643 3568899999999
Q ss_pred cCCCcEEEEEeeccc
Q psy889 146 LKPGGRFLCLEFSHV 160 (167)
Q Consensus 146 LkpgG~l~~~~~~~~ 160 (167)
|||||.+++.+..-+
T Consensus 527 LKPGGrLII~D~v~~ 541 (677)
T PRK06922 527 LKPGGRIIIRDGIMT 541 (677)
T ss_pred cCCCcEEEEEeCccC
Confidence 999999999875433
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-15 Score=110.69 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=75.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-----------p~~~v~gVD~s~~~i~~a~~~~~~~~~--------------------- 89 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-----------PDINFIGIEVHEPGVGKALKKIEEEGL--------------------- 89 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-----------CCccEEEEEechHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999998876 367899999999999999998865443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeeccc-CCCC--CCccchhhHhhhhcccccc--------cHHHHHHHHHHhcCCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANA-EELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPG 149 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~v~~~~~~~~~~--------~~~~~l~~~~~~Lkpg 149 (167)
.++.+...|. +.++ +.+++||.|++.....+.. ....++++++++||||
T Consensus 90 --------------------~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 90 --------------------TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred --------------------CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 2344555554 3333 3345566666543322211 2467899999999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
|.+++..
T Consensus 150 G~l~i~~ 156 (202)
T PRK00121 150 GEIHFAT 156 (202)
T ss_pred CEEEEEc
Confidence 9999865
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=108.19 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=88.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-|||+|||+|.. .+.++.. ++..++++|.++.|-+.+.+++.....
T Consensus 79 ~vLEvgcGtG~N----fkfy~~~--------p~~svt~lDpn~~mee~~~ks~~E~k~---------------------- 124 (252)
T KOG4300|consen 79 DVLEVGCGTGAN----FKFYPWK--------PINSVTCLDPNEKMEEIADKSAAEKKP---------------------- 124 (252)
T ss_pred ceEEecccCCCC----cccccCC--------CCceEEEeCCcHHHHHHHHHHHhhccC----------------------
Confidence 379999999977 3333211 367899999999999999998865432
Q ss_pred CCCceeeeeeccccccCCCCceE-EeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLR-FLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++. |+.++.++++ ..+++||.|+|..+++.+.+..+.|.++.|+|||||+++++|+..
T Consensus 125 -------------------~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 125 -------------------LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred -------------------cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 3555 7888888887 788999999999999999999999999999999999999999765
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
-
T Consensus 186 ~ 186 (252)
T KOG4300|consen 186 G 186 (252)
T ss_pred c
Confidence 3
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=108.75 Aligned_cols=109 Identities=43% Similarity=0.657 Sum_probs=90.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++.. ..
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~----------~~~~~~~iD~~~~~~~~~~~~~~--~~--------------------- 87 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAP----------DRGKVTGVDFSSEMLEVAKKKSE--LP--------------------- 87 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcC----------CCceEEEEECCHHHHHHHHHHhc--cC---------------------
Confidence 4799999999999999988763 12689999999999999998764 11
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...+..+.+...+.||+|++..++++.++...++++++++|+|||++++.++..+
T Consensus 88 --------------------~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 88 --------------------LNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred --------------------CCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 356677777776666667899999999999999999999999999999999999888765
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
..
T Consensus 148 ~~ 149 (223)
T TIGR01934 148 AN 149 (223)
T ss_pred Cc
Confidence 53
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=108.72 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=85.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|.|+|||+|+.|..+++.+ +++.++|+|.|++|++.|++++
T Consensus 33 ~v~DLGCGpGnsTelL~~Rw-----------P~A~i~GiDsS~~Mla~Aa~rl--------------------------- 74 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRW-----------PDAVITGIDSSPAMLAKAAQRL--------------------------- 74 (257)
T ss_pred eeeecCCCCCHHHHHHHHhC-----------CCCeEeeccCCHHHHHHHHHhC---------------------------
Confidence 78999999999999999999 4899999999999999998775
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..|..+|...+.. +...|+++++.+++|+++...+|.++...|.|||.|.+-.
T Consensus 75 -------------------p~~~f~~aDl~~w~p-~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 75 -------------------PDATFEEADLRTWKP-EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred -------------------CCCceecccHhhcCC-CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 356677777766543 3568999999999999999999999999999999998843
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=97.93 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=77.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ..+++++|+++.+++.++++....+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 68 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVP-----------NGRVYAIERNPEALRLIERNARRFGV--------------------- 68 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CceEEEEcCCHHHHHHHHHHHHHhCC---------------------
Confidence 4799999999999999998763 57899999999999999988876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...+... .+....+||.|++... ......++++++++|+|||.+++.-
T Consensus 69 --------------------~~~~~~~~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 69 --------------------SNIVIVEGDAPEALEDSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --------------------CceEEEeccccccChhhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 345555555443 2222357999987543 2345689999999999999999854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=113.91 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=86.9
Q ss_pred CeEEeeecCCCchHHHH----HHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRF----LNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
++|+|+|||+|..++.+ ++.... .. ....+++|+|+|+.|++.|++...... ..+.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~---~~---~~~~~I~g~Dis~~~L~~Ar~~~y~~~--------------~~~~ 160 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPK---AR---EPDVKILATDIDLKALEKARAGIYPER--------------ELED 160 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhh---cC---CCCeEEEEEECCHHHHHHHHcCCCCHH--------------HHhc
Confidence 48999999999865444 343321 00 024689999999999999997542110 0111
Q ss_pred CC--CCCCCCc----eeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCC
Q psy889 77 LP--IESDSYS----AYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKP 148 (167)
Q Consensus 77 l~--~~~~~fd----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~Lkp 148 (167)
+| .-..+|+ .+.+...++ .++.|...|+.+.+...+.||+|+|.+++++++ ...+++++++++|+|
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir------~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELK------ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP 234 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHh------CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC
Confidence 11 0111111 122222222 468899999888776678999999999998885 456899999999999
Q ss_pred CcEEEEEe
Q psy889 149 GGRFLCLE 156 (167)
Q Consensus 149 gG~l~~~~ 156 (167)
||+|++..
T Consensus 235 GG~L~lg~ 242 (264)
T smart00138 235 GGYLFLGH 242 (264)
T ss_pred CeEEEEEC
Confidence 99999843
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=104.51 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=78.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.+++++...+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~----------~~g~V~~iD~~~~~~~~a~~~l~~~~~--------------------- 122 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIE----------RRGKVYTVEIVKELAIYAAQNIERLGY--------------------- 122 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999988763 357899999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+.....++||.|++..++.+++ ++++++|+|||+|++..
T Consensus 123 -------------------~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 123 -------------------WGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------------------CCcEEEEECCcccCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 1346777777765433456899999877655443 47889999999998843
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=105.03 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=75.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +...++|+|++..+++.++++....+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~-----------p~~~v~gvD~~~~~l~~a~~~~~~~~l---------------------- 65 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQN-----------PDKNFLGIEIHTPIVLAANNKANKLGL---------------------- 65 (194)
T ss_pred eEEEeCCCccHHHHHHHHhC-----------CCCCEEEEEeeHHHHHHHHHHHHHhCC----------------------
Confidence 69999999999999999876 377899999999999999988876554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.++..|...++ ...+++|.|++++...|.+. ...++++++++|||||
T Consensus 66 -------------------~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 66 -------------------KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG 126 (194)
T ss_pred -------------------CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence 34555555554321 22345666665543222221 1568899999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.|++..
T Consensus 127 ~l~~~t 132 (194)
T TIGR00091 127 VIHFKT 132 (194)
T ss_pred EEEEEe
Confidence 998865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=109.07 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=85.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. +..+++++|. +.+++.++++++..+.
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~gl--------------------- 197 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHF-----------PELDSTILNL-PGAIDLVNENAAEKGV--------------------- 197 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHC-----------CCCEEEEEec-HHHHHHHHHHHHhCCc---------------------
Confidence 379999999999999999987 3788999997 7899999988876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+...+++ .+|+|++..++|.+.+ ...+++++++.|+|||++++.|+.
T Consensus 198 -------------------~~rv~~~~~d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 198 -------------------ADRMRGIAVDIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -------------------cceEEEEecCccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 14677888887654443 3699988888886654 468999999999999999999874
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 257 ~ 257 (306)
T TIGR02716 257 I 257 (306)
T ss_pred c
Confidence 4
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=104.33 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=79.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+.+... +.+++|+|+|+.+++.|+++..
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~-----------~~~v~giDiS~~~l~~A~~~~~-------------------------- 88 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLP-----------FKHIYGVEINEYAVEKAKAYLP-------------------------- 88 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHhhCC--------------------------
Confidence 699999999999999988652 6789999999999999987532
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
++.+...++.. ++.+++||+|++..++++++ +..++++++++++ ++++++.++-.
T Consensus 89 --------------------~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 89 --------------------NINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred --------------------CCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 23445566655 66778999999999988774 4688999999998 57888878754
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 146 ~ 146 (204)
T TIGR03587 146 P 146 (204)
T ss_pred C
Confidence 3
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=103.67 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=77.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ...+++++|+++.+++.+++++...+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~----------~~~~V~~vE~~~~~~~~a~~~l~~~g~--------------------- 126 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG----------KSGKVVTIERIPELAEKAKKTLKKLGY--------------------- 126 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999888764 357899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|........+.||.|++......+ ...+++.|||||+|++.
T Consensus 127 --------------------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 127 --------------------DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred --------------------CCeEEEECCcccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 46777777776544455789999886654332 34678899999999884
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=112.85 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.. +.+++|+|+|+.+++.++++...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~------------g~~V~giDlS~~~l~~A~~~~~~------------------------ 212 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHY------------GVSVVGVTISAEQQKLAQERCAG------------------------ 212 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHhcc------------------------
Confidence 489999999999999998765 57899999999999999987632
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.+...|...+ +++||.|++..+++++. +...++++++++|||||++++.++.
T Consensus 213 --------------------l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 213 --------------------LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred --------------------CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 1244555555443 46799999888887774 4578999999999999999998776
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 270 ~~~ 272 (383)
T PRK11705 270 SNK 272 (383)
T ss_pred CCC
Confidence 543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=105.59 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=79.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++...... ...+++|+|+|+.|++.++++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~------------------------- 110 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDG-------LRLEVTAIDPDPRAVAFARANPRR------------------------- 110 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCC-------CCcEEEEEcCCHHHHHHHHhcccc-------------------------
Confidence 799999999999999887542100 245899999999999999876532
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+...++..+++||+|+++.+++++++ ...++++++++++ |.+++.++..
T Consensus 111 -------------------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 111 -------------------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred -------------------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 1233434444444445678999999999999887 4679999999998 6666767665
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 170 ~ 170 (232)
T PRK06202 170 S 170 (232)
T ss_pred C
Confidence 4
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=102.75 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=84.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~--------------------- 92 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-------------GANVTGIDASEENIEVAKLHAKKDPL--------------------- 92 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999888763 45699999999999999988765432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+..+.+.. .++||+|++...+++..+...+++++.++|+|||.+++.....
T Consensus 93 --------------------~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 93 --------------------LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred --------------------CceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 2355666665544332 3679999999999999999999999999999999999876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=113.92 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=83.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++.... .
T Consensus 40 ~vLDlGcG~G~~~~~la~~-------------~~~v~giD~s~~~l~~a~~~~~~--~---------------------- 82 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKK-------------AGQVIALDFIESVIKKNESINGH--Y---------------------- 82 (475)
T ss_pred EEEEeCCCcCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHhcc--C----------------------
Confidence 7999999999999999874 45799999999999887643211 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|+. ..++++++||+|++..+++++++ ...++++++++|||||++++.+.
T Consensus 83 -------------------~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 83 -------------------KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred -------------------CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 35667777764 35566788999999999998876 67899999999999999999876
Q ss_pred ccc
Q psy889 158 SHV 160 (167)
Q Consensus 158 ~~~ 160 (167)
+..
T Consensus 144 ~~~ 146 (475)
T PLN02336 144 CFH 146 (475)
T ss_pred cCC
Confidence 544
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=108.87 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=72.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.+... ....++|+|+|+.+++.|+++.
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~--------~~~~v~giD~s~~~l~~A~~~~--------------------------- 132 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEI--------TTMQLFGLDISKVAIKYAAKRY--------------------------- 132 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccc--------cCCeEEEECCCHHHHHHHHHhC---------------------------
Confidence 69999999999999998865310 1247999999999999998653
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+..+|...+|+.+++||+|++... ...+++++|+|||||++++...+
T Consensus 133 -------------------~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 133 -------------------PQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -------------------CCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 2345566666667777778888876432 23467899999999999987644
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=98.96 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=79.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|-++..++... +..+++++|+++.+++.++++++..+.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~-----------~~~~v~~vDi~~~a~~~a~~n~~~n~~--------------------- 80 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRG-----------PDAKVTAVDINPDALELAKRNAERNGL--------------------- 80 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTS-----------TCEEEEEEESBHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEecCChHHHHHHHHHhC-----------CCCEEEEEcCCHHHHHHHHHHHHhcCc---------------------
Confidence 379999999999999999876 356799999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..+. .....||+|+++--++.-. ..++++.++.++|+|||.++++
T Consensus 81 --------------------~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 --------------------ENVEVVQSDLFEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp --------------------TTEEEEESSTTTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------ccccccccccccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3366666665432 2257899999876544322 3678899999999999999874
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 140 ~ 140 (170)
T PF05175_consen 140 I 140 (170)
T ss_dssp E
T ss_pred e
Confidence 4
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-13 Score=99.01 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=77.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++......
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~-----------~~~~v~~vD~s~~~~~~a~~n~~~~~~--------------------- 80 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQF-----------PSLQVTAIERNPDALRLIKENRQRFGC--------------------- 80 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998876 367899999999999999988865543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...+... +. ...||+|++.... ..+..++..++++|+|||++++....
T Consensus 81 --------------------~~i~~~~~d~~~-~~-~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 81 --------------------GNIDIIPGEAPI-EL-PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred --------------------CCeEEEecCchh-hc-CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 345555555432 22 3568999876532 34567889999999999999886543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=98.11 Aligned_cols=124 Identities=18% Similarity=0.061 Sum_probs=79.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.. +.+++++|+++.+++.++++....+. ++++..+|....+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK-------------GKCILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV-- 79 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--
Confidence 37999999999999998873 34899999999999999998865432 3566666654432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.+.||.+.+..+.......... ....+..+. ..-.......+++++++++|+|||.+++...+..
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRR--------------GDWLDVAID-GGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcccEEEECCCCCCCcchhcc--------------cchhhhhhh-cCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 3367766666555332111000 000111111 0000111256789999999999999999776544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=99.53 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=79.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||.|..+..+++ .|..++++|.|+..++.+++.++..+.
T Consensus 33 ~~LDlgcG~GRNalyLA~-------------~G~~VtAvD~s~~al~~l~~~a~~~~l---------------------- 77 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLAS-------------QGFDVTAVDISPVALEKLQRLAEEEGL---------------------- 77 (192)
T ss_dssp EEEEES-TTSHHHHHHHH-------------TT-EEEEEESSHHHHHHHHHHHHHTT-----------------------
T ss_pred cEEEcCCCCcHHHHHHHH-------------CCCeEEEEECCHHHHHHHHHHHhhcCc----------------------
Confidence 799999999999999998 478899999999999999887766554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.....|+....+. ..||+|++..+++++ +...++++.+.+.++|||++++..+.
T Consensus 78 --------------------~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 78 --------------------DIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp --------------------TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred --------------------eeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 477777887776654 679999886666655 34678999999999999999986553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-13 Score=101.37 Aligned_cols=98 Identities=16% Similarity=0.044 Sum_probs=75.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ...+++++|+++.+++.+++++...+.
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~----------~~g~V~~vD~~~~~~~~A~~~~~~~g~--------------------- 127 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVG----------RDGLVVSIERIPELAEKAERRLRKLGL--------------------- 127 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 4799999999999999988763 356799999999999999999887654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..........||+|++..... .+.+.+++.|+|||++++.
T Consensus 128 --------------------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 128 --------------------DNVIVIVGDGTQGWEPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred --------------------CCeEEEECCcccCCcccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEEE
Confidence 456777777655433346799998765433 2345678999999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-13 Score=100.50 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=78.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||.|.++..++..+ .+++++|+|+..++.|+++....
T Consensus 46 ~alEvGCs~G~lT~~LA~rC-------------d~LlavDis~~Al~~Ar~Rl~~~------------------------ 88 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRC-------------DRLLAVDISPRALARARERLAGL------------------------ 88 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGE-------------EEEEEEES-HHHHHHHHHHTTT-------------------------
T ss_pred eeEecCCCccHHHHHHHHhh-------------CceEEEeCCHHHHHHHHHhcCCC------------------------
Confidence 68999999999999999976 46999999999999999998643
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc---cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...+.... .+.+.||+|+++-+++++. ++..++.++.+.|+|||.|++..+.
T Consensus 89 -------------------~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 89 -------------------PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp -------------------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred -------------------CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4688888888664 4568999999998888775 4678899999999999999997764
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-13 Score=104.61 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=82.4
Q ss_pred eEEeeecCCCchHHHHHH--hhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh-cccCCCCCCcccccccccccCC
Q psy889 2 YILFYLVFPGDIAFRFLN--YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
+|+|+|||.|.++..++. +. ++++++++|+++++++.|++.+.. .+.
T Consensus 126 ~VldIGcGpgpltaiilaa~~~-----------p~~~~~giD~d~~ai~~Ar~~~~~~~gL------------------- 175 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHHL-----------PTTSFHNFDIDPSANDVARRLVSSDPDL------------------- 175 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHhhhccCc-------------------
Confidence 799999998866555443 34 478999999999999999998854 333
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.|...|..+.....+.||+|++. +++.+ ++..+++++++++|+|||.+++..
T Consensus 176 ---------------------~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 176 ---------------------SKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ---------------------cCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 256889888887654335789999999 66655 689999999999999999999854
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-13 Score=99.49 Aligned_cols=88 Identities=32% Similarity=0.503 Sum_probs=73.8
Q ss_pred EEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCc
Q psy889 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES 117 (167)
Q Consensus 38 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 117 (167)
+|+|+|+.|++.|+++.+..... ...++.++.+|.+++++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--------------------------------------~~~~i~~~~~d~~~lp~~~ 42 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--------------------------------------CYKCIEWIEGDAIDLPFDD 42 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--------------------------------------CCCceEEEEechhhCCCCC
Confidence 48999999999998776432110 0135788889998899888
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccCCc
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 163 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 163 (167)
++||+|++..+++++++...++++++|+|||||.+++.+++.+++.
T Consensus 43 ~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~ 88 (160)
T PLN02232 43 CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQS 88 (160)
T ss_pred CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChH
Confidence 8999999999999999999999999999999999999999977653
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=100.45 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++......
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~--------------------- 95 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL-------------GADVTGIDASEENIEVARLHALESGL--------------------- 95 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHc-------------CCeEEEEcCCHHHHHHHHHHHHHcCC---------------------
Confidence 37999999999999888762 56799999999999999988754331
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.+...+..+.+ ...+.||+|++..++++.++...+++++.++|+|||.+++..+.
T Consensus 96 ---------------------~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 96 ---------------------KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ---------------------ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2445555554433 23468999999999999999999999999999999999987654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=97.76 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=77.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.... ...+++++|+++.+++.++++....+.
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~----------~~~~v~avD~~~~~~~~a~~n~~~~g~--------------------- 90 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVG----------ETGKVYAVDKDEKAINLTRRNAEKFGV--------------------- 90 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 3799999999999999987653 357899999999999999999876542
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+. +...+.||.|++.. ....+..+++.+.++|+|||++++
T Consensus 91 -------------------~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 91 -------------------LNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred -------------------CCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence 03455555555442 22235789988743 245678899999999999999987
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=105.63 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=77.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++++..+.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~-----------p~~~v~~vDis~~Al~~A~~nl~~n~l---------------------- 245 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHS-----------PKIRLTLSDVSAAALESSRATLAANGL---------------------- 245 (342)
T ss_pred eEEEeccCcCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999876 367899999999999999998876443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc-----cccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+...|.... ..+.||+|+++-.+|. .....++++++.++|+|||.|+++.
T Consensus 246 --------------------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 --------------------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred --------------------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 123333443221 2467999999877764 2346788999999999999999865
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=105.81 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=76.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|.|+.+++.++++++..... ..
T Consensus 231 ~VLDLGCGtGvi~i~la~~~-----------P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~----------------- 280 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKN-----------PQAKVVFVDESPMAVASSRLNVETNMPE--AL----------------- 280 (378)
T ss_pred eEEEEeccccHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCcc--cC-----------------
Confidence 79999999999999999876 3789999999999999999988644320 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-----ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|.... ....+||+|+|+--+|.. ....++|++++++|+|||.|+++.
T Consensus 281 -------------------~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 281 -------------------DRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -------------------ceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1345554444221 223468888886554422 124688999999999999999964
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=97.44 Aligned_cols=117 Identities=8% Similarity=-0.015 Sum_probs=80.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|..+..+++ .+.+++|+|+|+.+++.+.+.... .. ...+ +
T Consensus 37 rvLd~GCG~G~da~~LA~-------------~G~~V~gvD~S~~Ai~~~~~~~~~-~~----------~~~~---~---- 85 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAE-------------QGHRVLGVELSEIAVEQFFAENGL-TP----------TVTQ---Q---- 85 (213)
T ss_pred eEEEeCCCchhHHHHHHh-------------CCCeEEEEeCCHHHHHHHHHHcCC-Cc----------ceec---c----
Confidence 799999999999999987 478899999999999986432210 00 0000 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+. .....++.+..+|+.++... .+.||.|+...++++++. ..+.++.+.+.|||||.+++..+.
T Consensus 86 ~~~~-----------~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 86 GEFT-----------RYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccce-----------eeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 0000 00124678888888766532 356888887666666643 467899999999999998887776
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 155 ~~ 156 (213)
T TIGR03840 155 YD 156 (213)
T ss_pred cC
Confidence 53
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=97.60 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=77.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.++++......
T Consensus 57 ~~vLDiGcG~G~~~~~la~-------------~~~~v~gvD~s~~~i~~a~~~~~~~~~--------------------- 102 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAK-------------RGAIVKAVDISEQMVQMARNRAQGRDV--------------------- 102 (219)
T ss_pred CEEEEEeCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999976 256899999999999999998864332
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|....+ .+||+|++..++++++ +...+++++++++++++++.+
T Consensus 103 -------------------~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 103 -------------------AGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -------------------CCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 135777777776654 6799999988877654 467889999999987766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=90.26 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=73.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+. ..++++..+|.....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~------------~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~-- 63 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG------------AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLP-- 63 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC------------TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHH--
T ss_pred CEEEEcCcchHHHHHHHHHHC------------CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhch--
Confidence 379999999999999998864 37899999999999999999876554 223444444444432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--------ccHHHHHHHHHHhcCCCcEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l 152 (167)
......+||+|+++--+... .....+++++.++|+|||.+
T Consensus 64 --------------------------------~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 64 --------------------------------EPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp --------------------------------HTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred --------------------------------hhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence 01334445555553322211 13467889999999999999
Q ss_pred EEEe
Q psy889 153 LCLE 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+++.
T Consensus 112 ~~~~ 115 (117)
T PF13659_consen 112 VFIT 115 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
|
... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=105.21 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=78.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||+|.++..++... +...++|+|+++.+++.+.+++...+.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~-----------P~~~~iGIEI~~~~i~~a~~ka~~~gL---------------------- 171 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNN-----------PNKLFIGIEIHTPSIEQVLKQIELLNL---------------------- 171 (390)
T ss_pred eEEEEcCcccHHHHHHHHhC-----------CCCCEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999977 478899999999999999999876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccccc------HHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR------IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.++..|+..+ .++++++|.|++++...|... ....+.+++|+|+|||.+.
T Consensus 172 -------------------~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 172 -------------------KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred -------------------CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 4566666665432 345567777776554333222 2567899999999999999
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+.+
T Consensus 233 l~T 235 (390)
T PRK14121 233 LRT 235 (390)
T ss_pred EEE
Confidence 854
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=101.42 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=74.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++....+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g------------~~~V~avDid~~al~~a~~n~~~n~~--------------------- 207 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLG------------AAKVVGIDIDPLAVESARKNAELNQV--------------------- 207 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 489999999999998877532 45899999999999999998875443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...+.. ....++||+|+++... ..+..++.+++++|||||+++++.+..
T Consensus 208 -------------------~~~~~~~~~~~~--~~~~~~fDlVvan~~~---~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 208 -------------------SDRLQVKLIYLE--QPIEGKADVIVANILA---EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred -------------------CcceEEEecccc--cccCCCceEEEEecCH---HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 022333333321 2234679999886532 335678899999999999999987653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-13 Score=96.56 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=83.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|++...+++.. -...++|+|.|+.+++.|+..+++.+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-----------f~~~L~GvDYs~~AV~LA~niAe~~~~---------------------- 116 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-----------FQSKLTGVDYSEKAVELAQNIAERDGF---------------------- 116 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-----------CCCCccccccCHHHHHHHHHHHHhcCC----------------------
Confidence 89999999999999998865 245699999999999999988887765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--------ccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~ 153 (167)
...+.|.++|..+..+..+.||+|+--.++..+ ..+...+..+.+.|+|||+|+
T Consensus 117 ------------------~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 117 ------------------SNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred ------------------CcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 134677777766655556667777654433322 112456788899999999999
Q ss_pred EEeecccCCcc
Q psy889 154 CLEFSHVNNSM 164 (167)
Q Consensus 154 ~~~~~~~~~~~ 164 (167)
|+.++.....+
T Consensus 179 ItSCN~T~dEL 189 (227)
T KOG1271|consen 179 ITSCNFTKDEL 189 (227)
T ss_pred EEecCccHHHH
Confidence 99888765443
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-12 Score=96.43 Aligned_cols=133 Identities=8% Similarity=0.036 Sum_probs=81.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-+||+||++|.++..+++++. ...+.|+|+++..++.|+++++....+ +..+. ++... .+.-
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~-----------~r~iLGvDID~~LI~~Ark~~r~~~~~---~~~~~---~~~~~-~~~~ 122 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFG-----------PRRILGVDIDPVLIQRARKEIRFPCDH---ETEVS---GKFPA-SFGV 122 (288)
T ss_pred eeEeccCCcchhHHHHHHhhc-----------cceeeEeeccHHHHHHHHHhccccccc---ccccc---CCCcc-cccc
Confidence 479999999999999999985 456999999999999999987532110 00000 00000 0000
Q ss_pred CCCceeeeeecccccc--------CCCCceEEeecccCCCCCCccchhhHhhhhccccc------ccHHHHHHHHHHhcC
Q psy889 82 DSYSAYTIAFGIRNID--------IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV------TRIDKALSEAYRVLK 147 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~------~~~~~~l~~~~~~Lk 147 (167)
.........+..+.++ ....+..+...|+- ......||+|+|..+..|+ ..+.++|.++++.|+
T Consensus 123 ~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~ 200 (288)
T KOG2899|consen 123 QFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH 200 (288)
T ss_pred ccccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC
Confidence 0011111111111111 12233333333332 3456789999998766654 358999999999999
Q ss_pred CCcEEEE
Q psy889 148 PGGRFLC 154 (167)
Q Consensus 148 pgG~l~~ 154 (167)
|||+|++
T Consensus 201 pgGiLvv 207 (288)
T KOG2899|consen 201 PGGILVV 207 (288)
T ss_pred cCcEEEE
Confidence 9999988
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-12 Score=104.81 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... ..++++++|+++.+++.++++++..+. .+++...+|+..++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMG----------DQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLEL 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhcccc
Confidence 4799999999999999998764 256899999999999999999987765 24666677766654
Q ss_pred --CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 --IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..+.||.+.+..+-+....... . .+..+....-++- ........++.+++++|||||+|++++
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r-------~-p~~~~~~~~~~~~------~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHR-------H-PDARWRQTPEKIQ------ELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred cccccccCCEEEEeCCCCccccccc-------C-cchhhhCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33456666655443321100000 0 0000000000110 011235788999999999999999876
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 385 cs 386 (434)
T PRK14901 385 CT 386 (434)
T ss_pred CC
Confidence 54
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=82.43 Aligned_cols=101 Identities=27% Similarity=0.372 Sum_probs=78.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||+|.++..++. . ...+++++|.++..++.+++.......
T Consensus 1 ~ildig~G~G~~~~~~~~-~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~---------------------- 46 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-----------PGARVTGVDISPVALELARKAAAALLA---------------------- 46 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-----------CCCEEEEEeCCHHHHHHHHHHHhcccc----------------------
Confidence 589999999999988877 2 367899999999999999853322221
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCC-CccchhhHhhhhcccc-cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...+..+... ..+.||++++...+++ ......+++.+.+.|+|||.+++.
T Consensus 47 -------------------~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 47 -------------------DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------------------cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345566666555432 4567999999988887 777899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-12 Score=93.67 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=72.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+++.+++.++++++..+.
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~-----------~~~~V~~vD~s~~~~~~a~~n~~~~~~--------------------- 89 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLC-----------PKGRVIAIERDEEVVNLIRRNCDRFGV--------------------- 89 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998755 367899999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|... .......+|.++. ........++.+++++|+|||++++...+
T Consensus 90 --------------------~~v~~~~~d~~~~~~~~~~~~d~v~~----~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 90 --------------------KNVEVIEGSAPECLAQLAPAPDRVCI----EGGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCeEEEECchHHHHhhCCCCCCEEEE----ECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234444444422 1111112344322 11235678999999999999999986644
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=98.84 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=87.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+. ..++++..+|..+ +++.
T Consensus 117 ~vLDlG~GsG~i~l~la~~~-----------~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~-~~~~ 180 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEF-----------PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFE-PLAG 180 (284)
T ss_pred EEEEEeccHhHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhc-cCcC
Confidence 79999999999999999876 367899999999999999999876553 2357888888655 3444
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..||.+++.++.-..... .. ..... .......+. ..-..+...++++.++.++|+|||++++ +++.
T Consensus 181 ~~fDlIvsNPPyi~~~~~------~~--~~~~~--~~eP~~AL~-gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~ 246 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDL------AD--LPNVV--RFEPLLALV-GGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN 246 (284)
T ss_pred CCccEEEECCCCCCcchh------hc--CCccc--ccCcHHHhc-CCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc
Confidence 478888887766421100 00 00000 000011111 1122345678899999999999999887 5553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-12 Score=97.90 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=70.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g------------~~~v~giDis~~~l~~A~~n~~~~~~--------------------- 167 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLG------------AKKVLAVDIDPQAVEAARENAELNGV--------------------- 167 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999988776532 34599999999999999998865432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...+ .+||+|+++.. ...+..++.+++++|||||++++..+...
T Consensus 168 -------------------~~~~~~~~~~--------~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 168 -------------------ELNVYLPQGD--------LKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred -------------------CceEEEccCC--------CCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 0112222111 26899987543 22356788999999999999999876543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=99.59 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=85.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|+++++..+. .+++++..+|+.+ .++.
T Consensus 136 ~VLDlG~GsG~iai~la~~~-----------p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~-~l~~ 199 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAF-----------PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFA-ALPG 199 (307)
T ss_pred EEEEEechhhHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhh-hCCC
Confidence 79999999999999999876 368899999999999999999876553 2467888888654 2234
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..||.+++.+|.-.... +.... ..+. ......+. ..-......+.+++++.++|+|||.+++ +...
T Consensus 200 ~~fDlIvsNPPyi~~~~------~~~l~-~~~~---~eP~~AL~-gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAED------MADLP-AEYR---HEPELALA-AGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN 265 (307)
T ss_pred CCccEEEECCCCCCccc------hhhcC-Hhhc---cCccceee-CCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 57888888766532110 00000 0000 00011111 0111233457789999999999999988 6554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=98.11 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=85.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|++++...+. ..++++..+|..+ +++.
T Consensus 124 ~vLDlG~GsG~i~~~la~~~-----------~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~-~~~~ 187 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAF-----------PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFA-ALPG 187 (284)
T ss_pred EEEEEeCchhHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhh-ccCC
Confidence 79999999999999999876 367899999999999999999876653 2367788888643 2334
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
+.||.+++.+|...... +... ...+ .......+.. .-......+.+++++.++|+|||++++ +++.
T Consensus 188 ~~fD~Iv~NPPy~~~~~------~~~l-~~~~---~~ep~~al~g-g~dGl~~~~~il~~a~~~L~~gG~l~~-e~g~ 253 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAED------MADL-PAEY---HHEPELALAS-GEDGLDLVRRILAEAADHLNENGVLVV-EVGN 253 (284)
T ss_pred CCccEEEECCCCCCccc------hhhC-CHhh---hcCHHHHhcC-CCcHHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 56887777766532110 0000 0000 0001111110 111233457889999999999999987 6654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=98.85 Aligned_cols=103 Identities=19% Similarity=0.100 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||||||+|..+..++... ...++|+|.+...+...+..-.-.+.
T Consensus 117 k~VLDIGC~nGY~~frM~~~G------------A~~ViGiDP~~lf~~QF~~i~~~lg~--------------------- 163 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRG------------AKSVIGIDPSPLFYLQFEAIKHFLGQ--------------------- 163 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcC------------CCEEEEECCChHHHHHHHHHHHHhCC---------------------
Confidence 489999999999999998854 45699999999887776543322221
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+.++....++++. .+.||.|+|..++.|..++-..|+++++.|+|||.|++=+
T Consensus 164 -------------------~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 164 -------------------DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -------------------CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 0234444456677776 6789999999999999999999999999999999999843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=95.93 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=83.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.... ..+++++|+++.+++.++++....+. .++++..+|+.+ +++.
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~-----------~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERP-----------DARVTAVDISPEALAVARKNAARLGL-----DNVTFLQSDWFE-PLPG 152 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhc-cCcC
Confidence 799999999999999998763 67899999999999999998876543 257788888765 4556
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
+.||.+++.++........ ....+... . ........ .-........+++++.++|+|||.+++
T Consensus 153 ~~fD~Vi~npPy~~~~~~~----~~~~~~~~--~--e~~~~~~~--~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIH----LLDPEVRF--H--EPRLALFG--GEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CceeEEEECCCCCchhhhh----hcChhhhh--c--CCHHHHcC--CCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7788887776654211100 00000000 0 00000000 112234456788999999999999988
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=94.87 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=68.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ..+++++|+++.|++.+.+++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-----------~g~V~avD~~~~ml~~l~~~a~~~----------------------- 119 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-----------EGVVYAVEFAPRPMRELLEVAEER----------------------- 119 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-----------CCeEEEEECCHHHHHHHHHHhhhc-----------------------
Confidence 4899999999999999998763 468999999999999887665432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|.... .. ..+||+|++... .......++.+++++|||||.+++
T Consensus 120 --------------------~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 120 --------------------KNIIPILADARKPERYAHV-VEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred --------------------CCcEEEECCCCCcchhhhc-cccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 1344444444321 11 234888875321 111224568999999999999999
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=104.03 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.++++++..+. .++++..+|+..++ +
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~----------~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQ----------NRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-P 315 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-c
Confidence 3799999999999999988764 356899999999999999999987664 24566666655543 3
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-ccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.+.||.+.+..+-.... .+. - ..+..+.. ....+..+ .....+|.+++++|||||++++.+++.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g------~~~-r-~p~~~~~~-------~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 316 EEQPDAILLDAPCTGTG------VLG-R-RAELRWKL-------TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCCEEEEcCCCCCcc------hhh-c-CcchhhcC-------CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34555444432221100 000 0 00000000 00000111 234578999999999999999977664
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=98.18 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=86.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||.|.....+++.... ....++++|.|+.+++..+++...... +
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n---------~~l~v~acDfsp~Ai~~vk~~~~~~e~------~--------------- 123 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN---------NRLKVYACDFSPRAIELVKKSSGYDES------R--------------- 123 (264)
T ss_pred hheeeccCCCcccchhhhcCCC---------CCeEEEEcCCChHHHHHHHhccccchh------h---------------
Confidence 5899999999999999885431 247899999999999999976532111 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....+...+.+ ..+...+++|.+++-+++..++ .+.+++++++++|||||.+++.|+
T Consensus 124 -------------------~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 124 -------------------VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred -------------------hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 11112222222 2356678999999988887654 478999999999999999999999
Q ss_pred cccCCccCC
Q psy889 158 SHVNNSMLQ 166 (167)
Q Consensus 158 ~~~~~~~~~ 166 (167)
+.-+..++|
T Consensus 185 g~~DlaqlR 193 (264)
T KOG2361|consen 185 GRYDLAQLR 193 (264)
T ss_pred ccchHHHHh
Confidence 887766554
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=99.82 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=76.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++. .+.+++|+|+++.|+..++++++..+.. .+.+..+|+.++++.
T Consensus 184 ~~vLDp~cGtG~~lieaa~-------------~~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGL-------------MGAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLPLS 245 (329)
T ss_pred CEEEECCCCCCHHHHHHHH-------------hCCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCCcc
Confidence 3799999999999877654 2678999999999999999998876541 145556666666555
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+++.+|.-. +... ..+.. .....++++++++|+|||++++....
T Consensus 246 ~~~~D~Iv~dPPyg~------~~~~----------------------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 246 SESVDAIATDPPYGR------STTA----------------------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cCCCCEEEECCCCcC------cccc----------------------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 555665555544311 0000 00011 22478899999999999999886544
|
This family is found exclusively in the Archaea. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=97.04 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=83.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ..++++++|+++.+++.++++++..+. .+++...+|...++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMK----------NEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAA 137 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhh
Confidence 4799999999999999998774 256899999999999999999987664 2466677776665544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+.+..+-+....- .-+. +..+....=++. ........+|+++.++|||||++++++++
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~-------~~~p-~~~~~~~~~~~~------~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVI-------RKDP-SRKKNWSEEDIQ------EISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred ccCCCEEEEcCCCCCCccc-------ccCh-hhhhcCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4557766665444321100 0000 000000000000 01123456899999999999999987655
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=98.34 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=73.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++++. .+.+++++|+|++|++.+++++..... .
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~----------~~~~~~~iDiS~~mL~~a~~~l~~~~p----~----------------- 114 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALR----------QPARYVPIDISADALKESAAALAADYP----Q----------------- 114 (301)
T ss_pred eEEecCCCcchhHHHHHHhhc----------cCCeEEEEECCHHHHHHHHHHHHhhCC----C-----------------
Confidence 699999999999999999873 257899999999999999998764321 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCcc----chhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESD----SYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~----~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++.+|+.+ .+.... ...++++...+++++ +..++|++++++|+|||.|++
T Consensus 115 -------------------~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 115 -------------------LEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred -------------------ceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 234455566544 222211 122333334455544 467899999999999999987
Q ss_pred E
Q psy889 155 L 155 (167)
Q Consensus 155 ~ 155 (167)
.
T Consensus 176 g 176 (301)
T TIGR03438 176 G 176 (301)
T ss_pred e
Confidence 3
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=93.36 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=72.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++.. ..+++++|+++.+++.++++++..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~-------------~~~v~~vd~~~~~~~~a~~~~~~~~~--------------------- 125 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHL-------------VRRVFSVERIKTLQWEAKRRLKQLGL--------------------- 125 (212)
T ss_pred CEEEEECCCccHHHHHHHHH-------------hCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 48999999999999877663 24799999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|........+.||+|++...+.++ .+.+++.|+|||.+++.-.
T Consensus 126 --------------------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 --------------------HNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred --------------------CceEEEECCcccCCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 34666666654422234679999886654333 4567899999999998543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=93.93 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=64.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++... ...+++++|+++ + ...
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~----------~~~~V~aVDi~~-~----------~~~---------------------- 90 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIG----------DKGRVIACDILP-M----------DPI---------------------- 90 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcC----------CCceEEEEeccc-c----------cCC----------------------
Confidence 799999999999999998764 357899999988 1 011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--------CCccchhhHhhhhcccccc-----------cHHHHHHHH
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVT-----------RIDKALSEA 142 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~v~~~~~~~~~~-----------~~~~~l~~~ 142 (167)
.++.+..+|..... ...+.||+|++....++.. ....+++++
T Consensus 91 -------------------~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~ 151 (209)
T PRK11188 91 -------------------VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC 151 (209)
T ss_pred -------------------CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHH
Confidence 12334444443321 3345567776644332211 125689999
Q ss_pred HHhcCCCcEEEEEeecc
Q psy889 143 YRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 143 ~~~LkpgG~l~~~~~~~ 159 (167)
+++|+|||.|++..+..
T Consensus 152 ~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 152 RDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHcCCCCEEEEEEecC
Confidence 99999999999977654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=102.96 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
.+|||+|||+|..+.+++..+. ..++++++|+++.+++.++++++..+. .++++..+|...++ +
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~----------~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMK----------DQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEY 303 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhh
Confidence 3799999999999999998764 367899999999999999999987765 23556666655554 3
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh---hhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+.+..+-..+..... + .|+... ...........++|.+++++|||||++++++
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~-------~----------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARN-------H----------PEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred hhccCCEEEECCCCCCCccccC-------C----------hHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3445665554433322110000 0 000000 0000011234778999999999999999977
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
++-
T Consensus 367 Cs~ 369 (431)
T PRK14903 367 CTV 369 (431)
T ss_pred CCC
Confidence 663
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=94.28 Aligned_cols=121 Identities=17% Similarity=0.060 Sum_probs=73.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+. ++++..+|+... ++.
T Consensus 39 ~vLDlGcG~G~~~~~la~~~------------~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~-~~~ 99 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAG------------AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARA-VEF 99 (223)
T ss_pred eEEEecCCHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhh-ccC
Confidence 79999999999999887632 34899999999999999988865432 345555555432 344
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+.||.+.+..+........ . .....+..+. ........+..++++++++|||||+++++.
T Consensus 100 ~~fD~Vi~npPy~~~~~~~------------~--~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDA------------P--PSRGPARAWD-AGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCeeEEEECCCCCCCCccc------------c--cccChhHhhh-CCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5666666554432110000 0 0000000000 000011235678899999999999999854
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=92.79 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=78.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|..+..+++ .+.+++|+|+|+.+++.+.+.. +..+ .....++
T Consensus 40 rvL~~gCG~G~da~~LA~-------------~G~~V~avD~s~~Ai~~~~~~~---~l~~-----~~~~~~~-------- 90 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAE-------------QGHEVLGVELSELAVEQFFAEN---GLTP-----QTRQSGE-------- 90 (218)
T ss_pred eEEEeCCCChHhHHHHHh-------------CCCeEEEEccCHHHHHHHHHHc---CCCc-----ccccccc--------
Confidence 799999999999999987 4788999999999999864321 1100 0000000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+. .....++.+..+|..++... .+.||.|+...++++++. ..++++.+.+.|+|||.+++..+.
T Consensus 91 --~~-----------~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 91 --FE-----------HYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred --cc-----------ccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 00 00124677778887766432 256888887777666653 468899999999999976665554
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.+
T Consensus 158 ~~ 159 (218)
T PRK13255 158 YP 159 (218)
T ss_pred eC
Confidence 43
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=89.59 Aligned_cols=124 Identities=23% Similarity=0.171 Sum_probs=74.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+. ....+++..+|..+ ++..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKN-------------GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred EEEEEccccCHHHHHHHhh-------------cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccc-cccc
Confidence 6999999999999999873 57899999999999999988865443 11115555555443 2333
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..||.+..+.+....... . . . ...++.... ........+..+++++.++|+|||.+++...
T Consensus 89 ~~~d~vi~n~p~~~~~~~---~--------~--~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEE---E--------E--W-DDWLNYALS-GGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCch---h--------h--h-hhhhhhhhc-cCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356655554333110000 0 0 0 000111100 0111123357789999999999999987653
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=92.75 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=73.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++ +.+++++|+|+.+++.++++....+.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~i~~a~~~~~~~~~--------------------- 110 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARR-------------GAKVVASDISPQMVEEARERAPEAGL--------------------- 110 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999998873 45699999999999999998765432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|.+ ..+++||+|++..++++++ ....+++++.+.+++++.+.
T Consensus 111 -------------------~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 111 -------------------AGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -------------------ccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 124666666633 2356799999998887654 46788888888776555443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=100.52 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=77.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
.+|||+|||+|..+..+++.+. .++++++|+++.+++.++++++..+.. .+++...+|....++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-----------~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-----------QAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQW 304 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEecccccccccc
Confidence 3799999999999999998762 578999999999999999999877651 123334444433332
Q ss_pred -CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 -ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 -~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+.||.+.+.-+-+....-.. ..+..+....=|+. ........+|.+++++|||||.|++++++
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~--------~p~~~~~~~~~~~~------~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRR--------HPDIKWLRKPRDIA------ELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCccccc--------CcchhhcCCHHHHH------HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3344444443322211100000 00000000000000 00122467899999999999999998766
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
-
T Consensus 371 ~ 371 (426)
T TIGR00563 371 V 371 (426)
T ss_pred C
Confidence 4
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=96.79 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=73.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||||-++++.+... ...++|+|+++.+++.++++++..+..
T Consensus 164 ~~vlDvGcGSGILaIAa~kLG------------A~~v~g~DiDp~AV~aa~eNa~~N~v~-------------------- 211 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLG------------AKKVVGVDIDPQAVEAARENARLNGVE-------------------- 211 (300)
T ss_pred CEEEEecCChhHHHHHHHHcC------------CceEEEecCCHHHHHHHHHHHHHcCCc--------------------
Confidence 479999999999999987633 456999999999999999998766541
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc-HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
........+.... ...+.||+|+++. +.+ +..+..++++.+||||+++++-+-
T Consensus 212 --------------------~~~~~~~~~~~~~-~~~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 212 --------------------LLVQAKGFLLLEV-PENGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred --------------------hhhhcccccchhh-cccCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 0011111111111 2235799999976 333 457778999999999999997654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=87.84 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+++|+|||+|+++..++... +..+++++|.++++++..+++.+..+.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~-----------p~~~v~AIe~~~~a~~~~~~N~~~fg~--------------------- 83 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAG-----------PSGRVIAIERDEEALELIERNAARFGV--------------------- 83 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhC-----------CCceEEEEecCHHHHHHHHHHHHHhCC---------------------
Confidence 368999999999999999544 589999999999999999999998886
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.++.++.++.-....++|.|++... ..++.+++.+...|||||+++.-
T Consensus 84 --------------------~n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 84 --------------------DNLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred --------------------CcEEEEeccchHhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 6888888887664222237999988653 67788999999999999999873
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=96.54 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=71.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.++++.........
T Consensus 146 ~~VLDlGcGtG~~a~~la~-------------~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~------------------ 194 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLAL-------------EGAIVSASDISAAMVAEAERRAKEALAALP------------------ 194 (315)
T ss_pred CEEEEecCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHhcccccc------------------
Confidence 3799999999999999987 367899999999999999998764321000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~ 153 (167)
...++.+...|++.+ +++||+|+|..+++++++ ...+++.+.+ +.++|.++
T Consensus 195 ------------------~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 195 ------------------PEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ------------------cccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 002456666676543 467999999988877765 3455666654 45555543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-11 Score=96.84 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=73.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ...+++++|+++.+++.|++++...+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~----------~~g~VvgVDis~~~l~~Ar~~l~~~g~--------------------- 130 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVRRLGI--------------------- 130 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999988763 235799999999999999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|........+.||+|++....... ...+.++|+|||.+++.
T Consensus 131 --------------------~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 131 --------------------ENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred --------------------CcEEEEeCChhhcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 35666666655443334569999886543332 33578899999998874
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-11 Score=98.60 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=81.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... +.+++++|+++.+++.++++++..+. ++++..+|+.+++
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-----------QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW 308 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-----------CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh
Confidence 4799999999999999998763 47899999999999999999987654 2456667766653
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+..+.||.+.+..+-.... .+ .. ..+..+....-|+- .......+++.+++++|||||++++++++
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G------~~-~~-~p~~~~~~~~~~l~------~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATG------VI-RR-HPDIKWLRRPEDIA------ALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cccCCCCEEEECCCCCccc------cc-cc-CccccccCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3445677666554432110 00 00 00000000000100 00123467899999999999999987753
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-11 Score=90.42 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ...++++|+++++++.++++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~------------~~~~~giD~s~~~i~~a~~~--------------------------- 55 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK------------QVRGYGIEIDQDGVLACVAR--------------------------- 55 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc------------CCcEEEEeCCHHHHHHHHHc---------------------------
Confidence 379999999999998887643 45689999999999888642
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-C-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp 148 (167)
++.+...+..+ . +..+++||+|+++.+++++++...+++++.+++++
T Consensus 56 ---------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 56 ---------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred ---------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 13344444433 2 24567899999999999999999999999887764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-11 Score=92.21 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=74.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++.... ....++++|..+...+.|++++...+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg----------~~g~Vv~vE~~~~l~~~A~~~l~~~~~--------------------- 122 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG----------PVGRVVSVERDPELAERARRNLARLGI--------------------- 122 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS----------TTEEEEEEESBHHHHHHHHHHHHHHTT---------------------
T ss_pred CEEEEecCCCcHHHHHHHHhcC----------ccceEEEECccHHHHHHHHHHHHHhcc---------------------
Confidence 6899999999999999998775 355799999999999999999988775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|...-....+.||.|++......++ ..+.+.|++||+|++.
T Consensus 123 --------------------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 123 --------------------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp --------------------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred --------------------CceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 567788887655434457799999977654333 2377889999999983
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-11 Score=95.54 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.||...||++|.-++.++-.+.+.-+... ...+++|+|+|+.+++.|++-... ...++.+|
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~---~~~~I~atDIs~~aL~~Ar~G~Y~--------------~~~~r~~p~~ 179 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAP---GRWKVFASDIDTEVLEKARSGIYR--------------QEELKTLSPQ 179 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccC---CCcEEEEEECCHHHHHHHHhCCCC--------------HHHHhcCCHH
Confidence 37999999999888888776543211100 256899999999999999975421 11223333
Q ss_pred CCCCCCc--------eeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccc--cHHHHHHHHHHhcC
Q psy889 79 IESDSYS--------AYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLK 147 (167)
Q Consensus 79 ~~~~~fd--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~Lk 147 (167)
+-..+|. .+.+...++ ..+.|...|+.+.+++ .+.||+|+|.+++.++. ...+++.++++.|+
T Consensus 180 ~~~ryF~~~~~~~~~~~~v~~~lr------~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~ 253 (287)
T PRK10611 180 QLQRYFMRGTGPHEGLVRVRQELA------NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK 253 (287)
T ss_pred HHHHHcccccCCCCceEEEChHHH------ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC
Confidence 2222232 234444444 5788888888764432 57899999999887774 47899999999999
Q ss_pred CCcEEEEE
Q psy889 148 PGGRFLCL 155 (167)
Q Consensus 148 pgG~l~~~ 155 (167)
|||+|++.
T Consensus 254 pgG~L~lG 261 (287)
T PRK10611 254 PDGLLFAG 261 (287)
T ss_pred CCcEEEEe
Confidence 99998773
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=91.43 Aligned_cols=130 Identities=21% Similarity=0.188 Sum_probs=83.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... +..+++++|+++.+++.+++++. .. ...++++..+|.... +.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~-----------~~~~v~~iDis~~~l~~a~~n~~-~~----~~~~i~~~~~d~~~~-~~ 172 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKER-----------PDAEVTAVDISPEALAVARRNAK-HG----LGARVEFLQGDWFEP-LP 172 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHH-hC----CCCcEEEEEccccCc-CC
Confidence 379999999999999999877 36789999999999999999886 11 124677777776432 23
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+++.++....... .... .++. .......+. .........+.+++++.++|+|||++++ +++
T Consensus 173 ~~~fD~Iv~npPy~~~~~~----~~~~---~~v~--~~ep~~al~-~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g 239 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADI----HLLQ---PEVR--DHEPHLALF-GGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG 239 (275)
T ss_pred CCceeEEEECCCcCCcchh----hhCC---chhh--hcCCchhhc-CCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC
Confidence 5678877777665321100 0000 0000 000011111 1122345567889999999999999998 443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=97.19 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++++..+. .++++..+|+..++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLK----------NTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEK 316 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccch
Confidence 3799999999999999998763 367899999999999999999987664 23677777776653
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++ +.||.+.+..+-.... .+ .-+ .+..+....-|+- ........++..++++|||||.+++.+++
T Consensus 317 ~~-~~fD~Vl~D~Pcsg~G------~~-~~~-p~~~~~~~~~~~~------~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 317 FA-EKFDKILVDAPCSGLG------VI-RRK-PDIKYNKTKEDIE------SLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hc-ccCCEEEEcCCCCCCe------ee-ccC-cchhhcCCHHHHH------HHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 33 5677666654432110 00 000 0000000000110 00122356899999999999999986544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.6e-11 Score=88.22 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||||||+|..+..+++.. .+++.+|..+...+.|++++...+.
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~-------------~~V~siEr~~~L~~~A~~~L~~lg~--------------------- 119 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLV-------------GRVVSIERIEELAEQARRNLETLGY--------------------- 119 (209)
T ss_pred CeEEEECCCchHHHHHHHHHh-------------CeEEEEEEcHHHHHHHHHHHHHcCC---------------------
Confidence 589999999999999998844 5899999999999999999998887
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+..+|...-......||.|++......+|. .+.+.||+||++++-.-
T Consensus 120 --------------------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 120 --------------------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred --------------------CceEEEECCcccCCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 5688888887664455688999998766444442 36778899999998443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=96.13 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=86.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~ 80 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.++++.+..+. ++++..+|..+..+ .
T Consensus 254 rVLDLGcGSG~IaiaLA~~~-----------p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALER-----------PDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDMPS 316 (423)
T ss_pred EEEEEeChhhHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhcccccc
Confidence 79999999999999998765 367899999999999999999875432 68888899766433 2
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.+.||.+++++|.-.... .. ...+.... .....+. ..-......+++++++.++|+|||.+++ +.+.
T Consensus 317 ~~~FDLIVSNPPYI~~~e----~~---l~~~~v~~---EP~~AL~-gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~ 383 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGD----KH---LLQGDLRF---EPQIALT-DFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF 383 (423)
T ss_pred CCCccEEEECCCCCCcch----hh---hcchhhhc---CHHHHhh-CCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc
Confidence 457999988876532110 00 00000000 0111111 1112234467888999999999999876 5554
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-11 Score=90.63 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=87.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
+|||+|||+|-+++.++.... ..+++++|+++.+.+.|+++.+...+ ..+++...+|+.+.. .
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~-----------~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTE-----------KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKAL 111 (248)
T ss_pred eEEEecCCcCHHHHHHhccCC-----------CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcc
Confidence 799999999999999999763 58999999999999999999986554 568888888888864 5
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+||.+++.+|....... ...+ + .... ..+ ...-++...++.+.+.|||||.+.++-
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~------~~~~----~----~~~~--Ar~--e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSR------LNEN----P----LRAI--ARH--EITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccccCEEEeCCCCCCCccc------cCcC----h----hhhh--hhh--hhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 55578888888777532111 0000 0 0000 100 012246778888999999999998843
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-11 Score=90.62 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=80.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|+|+|..+..++++. +..+++..|. +..++.+++ .
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~-----------P~l~~~v~Dl-p~v~~~~~~------~---------------------- 142 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAY-----------PNLRATVFDL-PEVIEQAKE------A---------------------- 142 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------TTSEEEEEE--HHHHCCHHH------T----------------------
T ss_pred EEEeccCcchHHHHHHHHHC-----------CCCcceeecc-Hhhhhcccc------c----------------------
Confidence 69999999999999999988 4889999997 667787776 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCC--cEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG--GRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~Lkpg--G~l~~~~~ 157 (167)
.++.+...|+. -+++. +|+|+..+++|.+++ ...+|+++++.|+|| |+|++.|.
T Consensus 143 -------------------~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 143 -------------------DRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -------------------TTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred -------------------cccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 57888888886 34443 999999999998765 568899999999999 99999998
Q ss_pred cccCC
Q psy889 158 SHVNN 162 (167)
Q Consensus 158 ~~~~~ 162 (167)
--++.
T Consensus 201 ~~~~~ 205 (241)
T PF00891_consen 201 VLPDD 205 (241)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 76554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-11 Score=93.80 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||||-++++.+... ..+++++|+++.+++.|+++....+.
T Consensus 163 ~~vLDvG~GSGILaiaA~klG------------A~~v~a~DiDp~Av~~a~~N~~~N~~--------------------- 209 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLG------------AKKVVAIDIDPLAVEAARENAELNGV--------------------- 209 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTT------------BSEEEEEESSCHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEeCCcHHHHHHHHHHcC------------CCeEEEecCCHHHHHHHHHHHHHcCC---------------------
Confidence 489999999999999987743 45799999999999999999986665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+. ...+ .....||+|+++.. ..-+..++..+.++|+|||+|+++-+-..
T Consensus 210 -------------------~~~~~v~--~~~~--~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 210 -------------------EDRIEVS--LSED--LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp -------------------TTCEEES--CTSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred -------------------CeeEEEE--Eecc--cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence 1233332 1111 12378999998753 23356777889999999999999876544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=86.82 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=30.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAM 46 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 46 (167)
.+|||+|||+|.++..+++... ...+++++|+++.+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~----------~~~~v~~vDis~~~ 69 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVG----------GKGRVIAVDLQPMK 69 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhC----------CCceEEEEeccccc
Confidence 3799999999999999988763 25689999999854
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-11 Score=89.22 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=67.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||||||+|-.+..+.+ .+...+|+|+|+.|++.|.++--.
T Consensus 53 ~iLDIGCGsGLSg~vL~~-------------~Gh~wiGvDiSpsML~~a~~~e~e------------------------- 94 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSD-------------SGHQWIGVDISPSMLEQAVERELE------------------------- 94 (270)
T ss_pred EEEEeccCCCcchheecc-------------CCceEEeecCCHHHHHHHHHhhhh-------------------------
Confidence 489999999999877766 467788999999999999963211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC-CCCCCccchhhHhhhhccccc-----------ccHHHHHHHHHHhcCCC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE-ELPIESDSYSAYTIAFGIRNV-----------TRIDKALSEAYRVLKPG 149 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~~-----------~~~~~~l~~~~~~Lkpg 149 (167)
.+++..|+. -+|+.+++||-+++...+.|+ +.+.++|..+|.+|++|
T Consensus 95 ---------------------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 95 ---------------------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred ---------------------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 223333442 356666666666654444332 22466788899999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
++.++-.
T Consensus 154 ~raV~Qf 160 (270)
T KOG1541|consen 154 ARAVLQF 160 (270)
T ss_pred ceeEEEe
Confidence 9988744
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=93.51 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=72.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCC-CCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP-NPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||-|+...-+... ...+++|+|++...++.|++|.......... ..+..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~----------- 120 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKA------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD----------- 120 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-----------
T ss_pred CeEEEecCCCchhHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-----------
Confidence 47999999998887666553 2678999999999999999999443210000 00000
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCC------CCCCccchhhHhhhhccccc----ccHHHHHHHHHHhcCCC
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE------LPIESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPG 149 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~Lkpg 149 (167)
-...+...|... ++.....||+|.|.+.+|.. ...+.+|.++.+.|+||
T Consensus 121 ---------------------f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 121 ---------------------FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp ---------------------CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ---------------------chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 112334443321 12223589999999888843 34678999999999999
Q ss_pred cEEEEEeec
Q psy889 150 GRFLCLEFS 158 (167)
Q Consensus 150 G~l~~~~~~ 158 (167)
|+|+.+...
T Consensus 180 G~FIgT~~d 188 (331)
T PF03291_consen 180 GYFIGTTPD 188 (331)
T ss_dssp EEEEEEEE-
T ss_pred CEEEEEecC
Confidence 999987643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=89.89 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=67.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++.+. ....++++|+++.+.+...+.....
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG----------~~G~VyAVD~s~r~~~dLl~~ak~r----------------------- 180 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVG----------PEGVVYAVEFSHRSGRDLTNMAKKR----------------------- 180 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhc-----------------------
Confidence 5899999999999999999874 3568999999987665554443211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|... +.....++|+|++... ...+.+.++.+++++|||||.|++
T Consensus 181 --------------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 181 --------------------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred --------------------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEE
Confidence 134444444432 1112246899987653 222344556789999999999999
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=89.13 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++.... ..++++++|+++.+++.|+++++..+.
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~----------~~g~v~tiD~d~~~~~~A~~n~~~~gl--------------------- 118 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALP----------EDGRITAIDIDKEAYEVGLEFIKKAGV--------------------- 118 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999988764 367999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..++..+. + ...++||+|++-.. .+....++..+.+.|+|||.+++
T Consensus 119 -------------------~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 119 -------------------DHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred -------------------CCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 13566666655432 1 11357999876431 24456788999999999999887
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=90.20 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=73.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+++++++.+++.+..... .
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~-----------p~~~v~~VEidp~vi~~A~~~f~~~~~----~----------------- 116 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYL-----------PDTRQTAVEINPQVIAVARNHFELPEN----G----------------- 116 (262)
T ss_pred EEEEECCCHhHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHHcCCCCC----C-----------------
Confidence 69999999999999998877 378899999999999999987642211 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcc-cccc---cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~-~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.++..|..+. ......||+|++...- ...+ ....+++++.++|+|||.+++-.
T Consensus 117 -------------------~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 117 -------------------ERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -------------------CceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 3455555554321 1122457777763210 1111 13688999999999999999854
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 178 ~~ 179 (262)
T PRK04457 178 WS 179 (262)
T ss_pred CC
Confidence 43
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-11 Score=90.48 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.||...||++|.-++.++-.+.+..+... ....+++|+|+|+.+++.|++-.- ....++++|
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~--~~~~~I~atDi~~~~L~~Ar~G~Y--------------~~~~~~~~~~~ 96 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGAL--GWDFRILATDISPSALEKARAGIY--------------PERSLRGLPPA 96 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-T--T-SEEEEEEES-HHHHHHHHHTEE--------------EGGGGTTS-HH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccC--CCceEEEEEECCHHHHHHHHhCCC--------------CHHHHhhhHHH
Confidence 37899999999887777665532100000 024689999999999999986442 222233443
Q ss_pred -----CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcE
Q psy889 79 -----IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 79 -----~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~ 151 (167)
|....-+.+.++..++ .++.|...|+.+.+...+.||+|+|.+++-.+.. .+++++.+++.|+|||+
T Consensus 97 ~~~ryf~~~~~~~~~v~~~lr------~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 97 YLRRYFTERDGGGYRVKPELR------KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp HHHHHEEEE-CCCTTE-HHHH------TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred HHHHhccccCCCceeEChHHc------CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 2111112233444444 5789999888774445688999999999887654 58899999999999999
Q ss_pred EEEE
Q psy889 152 FLCL 155 (167)
Q Consensus 152 l~~~ 155 (167)
|++.
T Consensus 171 L~lG 174 (196)
T PF01739_consen 171 LFLG 174 (196)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 9983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=88.32 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=71.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||+|..++.++.++ .+++|+|+|++|+..+++..+..-.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-------------k~VIatD~s~~mL~~a~k~~~~~y~---------------------- 80 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-------------KEVIATDVSEAMLKVAKKHPPVTYC---------------------- 80 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-------------hhheeecCCHHHHHHhhcCCCcccc----------------------
Confidence 46899999998888888865 4599999999999999876532111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCc-EEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~ 154 (167)
.........++..+.-.+.+.|+|+|...+||+. ..++.++++|+||++| .+.+
T Consensus 81 ------------------~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 81 ------------------HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ------------------cCCccccccccccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 0111222223333333378899999999888764 6788999999998877 5544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=94.99 Aligned_cols=130 Identities=20% Similarity=0.167 Sum_probs=84.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|+++....+. .+++++..+|... ++..
T Consensus 141 ~VLDlG~GsG~iai~la~~~-----------p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~-~~~~ 204 (506)
T PRK01544 141 NILELGTGSGCIAISLLCEL-----------PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFE-NIEK 204 (506)
T ss_pred EEEEccCchhHHHHHHHHHC-----------CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhh-hCcC
Confidence 69999999999999998876 368899999999999999999876543 2367777777543 2334
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-cccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
+.||.+++.++.-..... .....+ + ..|+-..+.. .-..+...+++++++.++|+|||.+++ +++.
T Consensus 205 ~~fDlIvsNPPYi~~~~~------~~l~~~-v----~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~ 271 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEK------SEMAIE-T----INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF 271 (506)
T ss_pred CCccEEEECCCCCCchhh------hhcCch-h----hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC
Confidence 578888877666321100 000000 0 0011111111 111234467788999999999999987 5543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-10 Score=87.99 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=77.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||.|-++..+++.. +..+++-+|.|..+++.+++++...+.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~-----------p~~~vtmvDvn~~Av~~ar~Nl~~N~~---------------------- 207 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKS-----------PQAKLTLVDVNARAVESARKNLAANGV---------------------- 207 (300)
T ss_pred cEEEeCCCccHHHHHHHHhC-----------CCCeEEEEecCHHHHHHHHHhHHHcCC----------------------
Confidence 69999999999999999987 478999999999999999999976554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-cc----HHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TR----IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~----~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..+...+..+ +.. ++||+|+|+=-+|.= .- ..+++.+..++|++||.|.++-
T Consensus 208 -------------------~~~~v~~s~~~~-~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 208 -------------------ENTEVWASNLYE-PVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred -------------------CccEEEEecccc-ccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 232333333322 222 289999998777632 11 3488999999999999999854
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=86.44 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=77.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-CC-C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP-I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-l~-~ 79 (167)
+|||+|||+|.++..++... .+.+++++|+|+.+++.+++++...+ .++..+|..+ ++ .
T Consensus 89 ~vLDlg~GsG~i~l~la~~~-----------~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAAL-----------DGIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDALPTA 149 (251)
T ss_pred EEEEecCchHHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhhcchh
Confidence 69999999999999998876 36789999999999999999986432 2566677554 22 1
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+.||.+++.+|....... . ..+.....++.-... ..-......+.++..+.++|+|||++++.
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~----~-------~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAI----A-------LMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred cCCCEeEEEECCCCCCchhh----h-------cCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12457777777665321100 0 000000001111111 11122334678888999999999999973
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-10 Score=89.05 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=73.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++. ...+++++|+++.+++.+++.+..........
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~-----------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d----------------- 130 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHP-----------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDD----------------- 130 (283)
T ss_pred EEEEEecCchHHHHHHHcCC-----------CCCEEEEEeCCHHHHHHHHHHhHHhccccccC-----------------
Confidence 79999999999999998764 25689999999999999999876432100011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccccc----HHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+...|.... ....+.||+|++...-..-+. ...+++.+++.|+|||.+++
T Consensus 131 -------------------~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 131 -------------------PRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -------------------CceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4556666655432 223456888877432221111 25678899999999999987
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=83.79 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=77.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||||||||.++.++++++ +..+..-.|.++......++.....+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-----------P~l~WqPSD~~~~~~~sI~a~~~~~~~---------------------- 74 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-----------PHLTWQPSDPDDNLRPSIRAWIAEAGL---------------------- 74 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-----------CCCEEcCCCCChHHHhhHHHHHHhcCC----------------------
Confidence 59999999999999999998 478889999999888777776655443
Q ss_pred CCCceeeeeeccccccCCCCce-EEeecccCCC--CC------CccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRL-RFLEANAEEL--PI------ESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG 150 (167)
.++ .-+..|.... +. ....||+|+|.+++|-. ...+.+|+.+.++|++||
T Consensus 75 -------------------~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 75 -------------------PNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred -------------------cccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence 111 1122233222 22 35689999999998854 457899999999999999
Q ss_pred EEEEE
Q psy889 151 RFLCL 155 (167)
Q Consensus 151 ~l~~~ 155 (167)
.|++.
T Consensus 136 ~L~~Y 140 (204)
T PF06080_consen 136 LLFLY 140 (204)
T ss_pred EEEEe
Confidence 99874
|
The function of this family is unknown. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-10 Score=84.51 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|||.|.+...+.+. .+.+.+|+|++++.+..+.++
T Consensus 15 srVLDLGCGdG~LL~~L~~~------------k~v~g~GvEid~~~v~~cv~r--------------------------- 55 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE------------KQVDGYGVEIDPDNVAACVAR--------------------------- 55 (193)
T ss_pred CEEEecCCCchHHHHHHHHh------------cCCeEEEEecCHHHHHHHHHc---------------------------
Confidence 38999999999998877664 278899999999998888754
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-C-CCCccchhhHhhhhcccccccHHHHHHHHHHhcC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 147 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lk 147 (167)
.+.+++.|++. + .+++++||.|+++.++..+..++.+|.++.|+=|
T Consensus 56 ---------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 56 ---------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred ---------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 34566777654 3 4889999999999999999999999988877733
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=83.99 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=82.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||+|.|.|+|.++..+++... +.++++..|+.++..+.|+++++..+.
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg----------~~G~v~tyE~r~d~~k~A~~Nl~~~~l--------------------- 144 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVG----------PEGHVTTYEIREDFAKTARENLSEFGL--------------------- 144 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhC----------CCceEEEEEecHHHHHHHHHHHHHhcc---------------------
Confidence 5899999999999999999886 478999999999999999999988765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+..... .||.|+. -++++..++..+++.|+|||.+++..
T Consensus 145 -------------------~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 145 -------------------GDRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred -------------------ccceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 133666666665544433 7888866 37899999999999999999998744
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=84.81 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=78.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||||-++..++.+. +..+++++|+|+.+++.|++++...+. .++..+.+|... +...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-----------~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~~dlf~-~~~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-----------PDAEVIAVDISPDALALARENAERNGL-----VRVLVVQSDLFE-PLRG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-----------cCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEeeeccc-ccCC
Confidence 59999999999999999987 367999999999999999999987653 122222222111 0111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.||.++.++|.=... +....+ .........+.... ..+...++++.++.++|+|||.+++ +.+.
T Consensus 176 -~fDlIVsNPPYip~~-----------~~~~~~~~~~~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~ 240 (280)
T COG2890 176 -KFDLIVSNPPYIPAE-----------DPELLPEVVRYEPLLALVGGG-DGLEVYRRILGEAPDILKPGGVLIL-EIGL 240 (280)
T ss_pred -ceeEEEeCCCCCCCc-----------ccccChhhhccCHHHHHccCc-cHHHHHHHHHHhhHHHcCCCcEEEE-EECC
Confidence 566555555542100 000000 00011111222222 3455678899999999999998887 6553
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-10 Score=85.45 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=74.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+.||.|||.|.+|..++-.. ..++-.+|..+.+++.|++.+.....
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~------------f~~VDlVEp~~~Fl~~a~~~l~~~~~--------------------- 103 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPV------------FDEVDLVEPVEKFLEQAKEYLGKDNP--------------------- 103 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-------------SEEEEEES-HHHHHHHHHHTCCGGC---------------------
T ss_pred ceEEecccccchhHHHHHHHh------------cCEeEEeccCHHHHHHHHHHhcccCC---------------------
Confidence 378999999999999886543 56788999999999999976643111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....+....++++....+.||+|++.+++.++++ ...+|+++.+.|+|||.+++-|
T Consensus 104 --------------------~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 104 --------------------RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp --------------------CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 2245666667666555678999999999988876 6788999999999999999854
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=84.25 Aligned_cols=117 Identities=9% Similarity=0.172 Sum_probs=79.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ...+++++|+++.+++.++++. ++++|..+|+.+... .
T Consensus 67 rVLDLGcGsGilsl~la~r~-----------~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~-~ 124 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRC-----------KPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFES-N 124 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcc-c
Confidence 79999999999999887754 2578999999999999998753 256788888887653 3
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCc--cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..||.++..++.........+- + ..+.. ..++.+ ...+.+.....+|+|+|.++++-.+
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~------~--~~~~GG~~g~~~l----------~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKD------V--FEYTGGEFEFKVM----------TLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred CCCcEEEEcCCccccCchhhhh------h--hhhccCccccccc----------cHHHHHhhhHheecCCceEEEEEec
Confidence 5788888887775432111100 0 11110 111221 1356778888999999988776433
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-10 Score=90.96 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=72.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+. ...++++..+|+.... +
T Consensus 223 rVLDlfsgtG~~~l~aa~~------------ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMG------------GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred eEEEeccCCCHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHH
Confidence 7999999999998876542 145899999999999999999876554 1124566666654421 1
Q ss_pred --CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 80 --ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 80 --~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.||.+.+.+|... .. .-.+. ........++..+.++|+|||.++.+.+
T Consensus 288 ~~~~~~fDlVilDPP~f~-------------------~~--k~~l~------~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFV-------------------EN--KSQLM------GACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HhcCCCCCEEEECCCCCC-------------------CC--hHHHH------HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2334554444433210 00 00000 0122345666778999999999998665
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
+
T Consensus 341 s 341 (396)
T PRK15128 341 S 341 (396)
T ss_pred C
Confidence 4
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=80.83 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=83.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||..|||.|..+..+++ .+.+++|+|+|+..++.+.+.......
T Consensus 46 rvLvPgCGkg~D~~~LA~-------------~G~~V~GvDlS~~Ai~~~~~e~~~~~~---------------------- 90 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLS-------------KGVKVIGIELSEKAVLSFFSQNTINYE---------------------- 90 (226)
T ss_pred eEEEeCCCChHHHHHHHh-------------CCCcEEEEecCHHHHHHHHHHcCCCcc----------------------
Confidence 899999999999999988 478899999999999998764311000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..........+.++.+.++|+.+++.. .+.||+|+-...++.++. -.+.++.+.++|+|||.++++.
T Consensus 91 -------~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 91 -------VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred -------eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0000000001124678888888776532 257999988777776654 4677899999999999999988
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
+..
T Consensus 164 ~~~ 166 (226)
T PRK13256 164 MEH 166 (226)
T ss_pred Eec
Confidence 754
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=81.24 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||+|||.|.+...++... ++..++|+|+....+..+.+++...+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-----------Pd~n~iGiE~~~~~v~~a~~~~~~~~l---------------------- 66 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-----------PDINFIGIEIRKKRVAKALRKAEKRGL---------------------- 66 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------TTSEEEEEES-HHHHHHHHHHHHHHTT----------------------
T ss_pred eEEEecCCCCHHHHHHHHHC-----------CCCCEEEEecchHHHHHHHHHHHhhcc----------------------
Confidence 47999999999999999977 488999999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC---CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.++..|...+ -+.++++|.|...+---|.+. -...+..+.++|+|||
T Consensus 67 -------------------~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 67 -------------------KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp -------------------SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred -------------------cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 5677777666542 133456666655443222221 2467889999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.+.+.+
T Consensus 128 ~l~~~T 133 (195)
T PF02390_consen 128 ELYFAT 133 (195)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998854
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=84.32 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=71.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|+|.|.++..++..+ .+++++|.|+.|....++ .+.
T Consensus 97 ~lLDlGAGdG~VT~~l~~~f-------------~~v~aTE~S~~Mr~rL~~----kg~---------------------- 137 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPLF-------------KEVYATEASPPMRWRLSK----KGF---------------------- 137 (265)
T ss_pred ceEEecCCCcHHHHHHHhhc-------------ceEEeecCCHHHHHHHHh----CCC----------------------
Confidence 68999999999999998865 559999999999655543 222
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++..+ ++...+..||+|.|.+++..-..+..+|+++++.|+|+|++++
T Consensus 138 ----------------------~vl~~~--~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 138 ----------------------TVLDID--DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ----------------------eEEehh--hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 222211 1222345799999999999888999999999999999999997
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=79.44 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~-------------~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 16 TVLEIGPGKGALTEELLER-------------AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred EEEEECCCccHHHHHHHhc-------------CCeEEEEECCHHHHHHHHHHhc
Confidence 7999999999999999883 4679999999999999998874
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=86.26 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=77.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-++|+|||-|+-.+.+-.+. ..+++|+|++..+++.|++|++....- ++.
T Consensus 120 ~~~~LgCGKGGDLlKw~kAg------------I~~~igiDIAevSI~qa~~RYrdm~~r------------------~~~ 169 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAG------------IGEYIGIDIAEVSINQARKRYRDMKNR------------------FKK 169 (389)
T ss_pred ccceeccCCcccHhHhhhhc------------ccceEeeehhhccHHHHHHHHHHHHhh------------------hhc
Confidence 37899999999977765543 568999999999999999999865430 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC------CCCCCccchhhHhhhhcccc-c---ccHHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE------ELPIESDSYSAYTIAFGIRN-V---TRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v~~~~~~~~-~---~~~~~~l~~~~~~LkpgG~ 151 (167)
-. -...|..+|-. -++..+..||+|-|.+++|. + ...+.++.++.+.|+|||+
T Consensus 170 ~~-----------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 170 FI-----------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred cc-----------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 00 11344444432 12344555999999998883 2 3467889999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
|+-+-
T Consensus 233 FIgTi 237 (389)
T KOG1975|consen 233 FIGTI 237 (389)
T ss_pred EEEec
Confidence 98743
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=95.25 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=75.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-CCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~ 80 (167)
+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+. ...++++..+|..+. .-.
T Consensus 541 rVLDlf~gtG~~sl~aa~~G------------a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALGG------------AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred eEEEcCCCCCHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHc
Confidence 79999999999999998732 34699999999999999999976554 113566676765442 111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+.||.+++.+|.... .. ..+ ..+....+...++..+.++|+|||.+++...
T Consensus 606 ~~~fDlIilDPP~f~~-------------------~~-~~~-----~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 REQFDLIFIDPPTFSN-------------------SK-RME-----DSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCcCEEEECCCCCCC-------------------CC-ccc-----hhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3455555544333210 00 000 0011123456778889999999999987543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-10 Score=84.88 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=76.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||||-.+-++... ..+++|+|+|..|++.|.++-- .
T Consensus 128 ~~lDLGCGTGL~G~~lR~~-------------a~~ltGvDiS~nMl~kA~eKg~---Y---------------------- 169 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDM-------------ADRLTGVDISENMLAKAHEKGL---Y---------------------- 169 (287)
T ss_pred eeeecccCcCcccHhHHHH-------------HhhccCCchhHHHHHHHHhccc---h----------------------
Confidence 7999999999999998774 4679999999999999987531 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.. +.+++... ++ .....||+|....++..+-.+..+|.-+...|+|||.|.|+.-.-
T Consensus 170 -------------------D~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 170 -------------------DT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred -------------------HH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 00 01111110 11 234569999999999999999999999999999999999976544
Q ss_pred cC
Q psy889 160 VN 161 (167)
Q Consensus 160 ~~ 161 (167)
++
T Consensus 229 ~~ 230 (287)
T COG4976 229 PD 230 (287)
T ss_pred CC
Confidence 43
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-09 Score=82.21 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=85.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+||+.|.+..++.... -..++-+|.|-.|++.++.. +.-
T Consensus 75 ~a~diGcs~G~v~rhl~~e~------------vekli~~DtS~~M~~s~~~~-qdp------------------------ 117 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEG------------VEKLIMMDTSYDMIKSCRDA-QDP------------------------ 117 (325)
T ss_pred ceeecccchhhhhHHHHhcc------------hhheeeeecchHHHHHhhcc-CCC------------------------
Confidence 47899999999999987643 45799999999999988742 111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.-.+.+...|.+.+++.+.++|+|+.+..+||+.++...+-++...|||+|.|+-.-++
T Consensus 118 ------------------~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 118 ------------------SIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred ------------------ceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhc
Confidence 13466777888889999999999999999999999999999999999999999865444
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-09 Score=82.66 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc-ccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~l~- 78 (167)
.||.-.||++|.-++.++-.+.+..+. -......++|+|+|..+++.|+.-.-. .... +++|
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~--~~~~~~~I~AtDId~~~L~~A~~G~Y~--------------~~~~~~~~~~ 161 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGK--LAGFRVKILATDIDLSVLEKARAGIYP--------------SRELLRGLPP 161 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhcc--ccCCceEEEEEECCHHHHHHHhcCCCC--------------hhHhhccCCH
Confidence 378999999998888877665432221 011357899999999999999864422 0111 3333
Q ss_pred -CCCCCCc-----eeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCc
Q psy889 79 -IESDSYS-----AYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 79 -~~~~~fd-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
.-..+|+ .+.++..++ ..+.|...|+..-++..+.||+|+|.+++-.+. ...+++.+.+..|+|||
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir------~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELR------KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHh------cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 1122222 244444443 578888888766554668899999999987664 46889999999999999
Q ss_pred EEEEE
Q psy889 151 RFLCL 155 (167)
Q Consensus 151 ~l~~~ 155 (167)
+|++.
T Consensus 236 ~LflG 240 (268)
T COG1352 236 LLFLG 240 (268)
T ss_pred EEEEc
Confidence 99984
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.3e-09 Score=80.83 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=75.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||.|.|+|.++..+++.+. +.++++..|+.++..+.|+++++..+.
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v~----------p~G~v~t~E~~~~~~~~A~~n~~~~gl--------------------- 90 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAVG----------PTGHVYTYEFREDRAEKARKNFERHGL--------------------- 90 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCcHHHHHHHHHHhC----------CCeEEEccccCHHHHHHHHHHHHHcCC---------------------
Confidence 5899999999999999999986 578999999999999999999998775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhc-CCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL-KPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 156 (167)
..++.+...|...-.+. +..+|.|+. -++++..++..+.+.| ++||++++..
T Consensus 91 -------------------~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 91 -------------------DDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp -------------------CTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred -------------------CCCceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 13556655555432221 245777654 3678888899999999 8999987743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-09 Score=83.93 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=67.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
.++|.+||.|+++..+++.+. ...+++|+|.++.+++.+++++.. ..++++..+++.++. .
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~----------~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLG----------PKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCC----------CCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHH
Confidence 689999999999999999873 357899999999999999988743 247899999998875 2
Q ss_pred CC--CCCceeeeeeccccccC
Q psy889 80 ES--DSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 80 ~~--~~fd~~~~~~~~~~~~~ 98 (167)
+. ..+|.+...+|.+.+..
T Consensus 85 ~~~~~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 85 AEGLGKVDGILLDLGVSSPQL 105 (296)
T ss_pred HcCCCccCEEEECCCcccccc
Confidence 22 27999999999998863
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-09 Score=82.74 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=71.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||+|.++..++++. ...+++++|+++.+++.+++.+..... ...
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~-----------~~~~v~~veid~~vi~~a~~~~~~~~~-~~~------------------ 124 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHK-----------SVEKATLVDIDEKVIELSKKFLPSLAG-SYD------------------ 124 (270)
T ss_pred EEEEEcCCchHHHHHHHhCC-----------CcceEEEEeCCHHHHHHHHHHhHhhcc-ccc------------------
Confidence 79999999999999888754 256899999999999999987653221 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccc--cc--HHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNV--TR--IDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~--~~--~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|... +......||+|++......- .. ...+++.+.+.|+|||.+++.
T Consensus 125 ------------------~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 125 ------------------DPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ------------------CCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1344444444322 11123568888775432111 11 357788999999999999984
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-09 Score=79.83 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=78.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+++|..+..+++.+. .+++++.+|.++...+.|++.++..+.
T Consensus 48 ~vLEIGt~~GySal~la~~l~----------~~g~i~tiE~~~~~~~~A~~~~~~ag~---------------------- 95 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALP----------EDGKITTIEIDPERAEIARENFRKAGL---------------------- 95 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTST----------TTSEEEEEESSHHHHHHHHHHHHHTTG----------------------
T ss_pred eEEEeccccccHHHHHHHhhc----------ccceEEEecCcHHHHHHHHHHHHhcCC----------------------
Confidence 799999999999999999875 478999999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.++..++ + ...+.||+|++-. ...+....+..+.+.|+|||.+++
T Consensus 96 ------------------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 96 ------------------DDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp ------------------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------CCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEE
Confidence 14677777765432 1 1135799997743 234566788888999999999988
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.7e-09 Score=81.28 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=77.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+++|..+..++..+. ..++++.+|.+++..+.|+++++..+.
T Consensus 121 ~VLEIGT~tGySal~lA~al~----------~~G~V~TiE~d~e~~~~Ar~n~~~aGl---------------------- 168 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLP----------ESGCLVACERDSNSLEVAKRYYELAGV---------------------- 168 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 799999999999999998774 367899999999999999999988776
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..++..+. + ...++||+|+.-. ........+..+.+.|+|||.+++
T Consensus 169 ------------------~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 169 ------------------SHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred ------------------CCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 13566666655332 1 1135789887632 234567788899999999999987
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=85.59 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=76.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
++|||+|||.|+-|.+++..+. ..+.+++.|+++.-+...++++++.+. .++.....|...+. .
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~----------~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMN----------NQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAA 179 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhh
Confidence 4799999999999999999885 357899999999999999999998876 12333334433331 1
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh---hhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+++.-+=+... .+ ....|.... ..+.....-..++|..++++|||||+|++++
T Consensus 180 ~~~~fD~ILvDaPCSG~G------~~-----------rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 180 LPETFDAILLDAPCSGEG------TV-----------RKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred chhhcCeEEEcCCCCCCc------cc-----------ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 122344333222211100 00 000011000 0000011234678899999999999999977
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 243 CT 244 (470)
T PRK11933 243 CT 244 (470)
T ss_pred CC
Confidence 66
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.2e-09 Score=78.67 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|.+.|..+..++..+. ..++++.+|+++++.+.|+++++..+.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~----------~~g~l~tiE~~~e~~~~A~~n~~~ag~--------------------- 109 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALP----------DDGRLTTIERDEERAEIARENLAEAGV--------------------- 109 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCC----------CCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999999884 367999999999999999999998876
Q ss_pred CCCCceeeeeeccccccCCCCceEEee-cccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLE-ANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.... +|..+. . ...++||+|++-. ...+-...|..+.+.|+|||.+++
T Consensus 110 -------------------~~~i~~~~~gdal~~l~~~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 110 -------------------DDRIELLLGGDALDVLSRLLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred -------------------cceEEEEecCcHHHHHHhccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 13455555 343322 1 3468899998743 244567889999999999999987
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=82.23 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=72.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++- ...+++.+|+++.+++.+++.+..... ....
T Consensus 94 rVLiIGgG~G~~~rellk~~-----------~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~d----------------- 144 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHS-----------SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDD----------------- 144 (308)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCC-----------------
Confidence 79999999999999998763 256899999999999999998754321 0111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-CCccchhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|.... . ...+.||+|++-..-..-+ ....+++.+++.|+|||.++.
T Consensus 145 -------------------pRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 145 -------------------PRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred -------------------CceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4566666664322 1 1235688887743221111 135678899999999999976
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=78.36 Aligned_cols=137 Identities=20% Similarity=0.149 Sum_probs=77.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccc----ccc-ccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL----EAN-AEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~d-~~~ 76 (167)
.|||+|||+|-++..++.-+ +..+++++|.|++++..|.++..+... +++++-. ..| ..+
T Consensus 151 ~ildlgtGSGaIslsll~~L-----------~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGL-----------PQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDASDE 215 (328)
T ss_pred eEEEecCCccHHHHHHHhcC-----------CCceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccccc
Confidence 48999999999999999877 478999999999999999999987665 2222222 111 111
Q ss_pred CCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 77 LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+......|..+.+++.=...+ ...+.......+.....+ ...........++.-+-|+|+|||.+.+-.
T Consensus 216 ~~l~~~~~dllvsNPPYI~~dD-~~~l~~eV~~yEp~lALd---------Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 216 HPLLEGKIDLLVSNPPYIRKDD-NRQLKPEVRLYEPKLALD---------GGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccCceeEEecCCCcccccc-hhhcCchheecCchhhhc---------cccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 2344455555555544421111 000000000000000000 011122233445667889999999999844
Q ss_pred ecccCCc
Q psy889 157 FSHVNNS 163 (167)
Q Consensus 157 ~~~~~~~ 163 (167)
...++++
T Consensus 286 ~~~~~~~ 292 (328)
T KOG2904|consen 286 VERKEHS 292 (328)
T ss_pred cccccCc
Confidence 4344443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=90.92 Aligned_cols=141 Identities=16% Similarity=0.026 Sum_probs=88.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCC-----------CCCCccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-----------VPNPRLRFL 70 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~ 70 (167)
+|||+|||+|.++..++.+.. ..+++++|+|+.+++.|++++...+... ....++++.
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~-----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWL-----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 799999999999999998773 5789999999999999999997543210 112478999
Q ss_pred ccccccCCCC-CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccc--hh--hHhhhhc----ccccccHHHHHHH
Q psy889 71 EANAEELPIE-SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDS--YS--AYTIAFG----IRNVTRIDKALSE 141 (167)
Q Consensus 71 ~~d~~~l~~~-~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~D--~v~~~~~----~~~~~~~~~~l~~ 141 (167)
.+|.....-. ...||.++..+|.=.... ...+.....+ ..+.. |+ -...... -..+...++++.+
T Consensus 190 ~sDl~~~~~~~~~~fDlIVSNPPYI~~~e----~~~l~~eV~~--~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~ 263 (1082)
T PLN02672 190 ESDLLGYCRDNNIELDRIVGCIPQILNPN----PEAMSKLVTE--NASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 263 (1082)
T ss_pred ECchhhhccccCCceEEEEECCCcCCCcc----hhhcChhhhh--ccccccccccCccccccCCCCCCcHHHHHHHHHHH
Confidence 9997654322 235888888776522110 0000000000 00000 00 0111111 1234456889999
Q ss_pred HHHhcCCCcEEEEEeeccc
Q psy889 142 AYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 142 ~~~~LkpgG~l~~~~~~~~ 160 (167)
+.++|+|||.+++ |++..
T Consensus 264 a~~~L~pgG~l~l-EiG~~ 281 (1082)
T PLN02672 264 GISVIKPMGIMIF-NMGGR 281 (1082)
T ss_pred HHHhccCCCEEEE-EECcc
Confidence 9999999999887 77654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=84.23 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=40.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++...+.
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-------------AAEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 37999999999999999874 46799999999999999999876554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=76.68 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=78.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||..|||.|.....+++ .+.+++|+|+|+.+++.+.+........ ..
T Consensus 40 rvLvPgCG~g~D~~~La~-------------~G~~VvGvDls~~Ai~~~~~e~~~~~~~--------------~~----- 87 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAE-------------QGHDVVGVDLSPTAIEQAFEENNLEPTV--------------TS----- 87 (218)
T ss_dssp EEEETTTTTSCHHHHHHH-------------TTEEEEEEES-HHHHHHHHHHCTTEEEC--------------TT-----
T ss_pred eEEEeCCCChHHHHHHHH-------------CCCeEEEEecCHHHHHHHHHHhccCCCc--------------cc-----
Confidence 799999999999999988 4778999999999999986443211100 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
...... ....++.+.++|.-.++.. .+.||+|+-...++.++ .-.+..+.+.++|+|||.++++.+.
T Consensus 88 --~~~~~~--------~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 88 --VGGFKR--------YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp --CTTEEE--------ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred --ccceee--------ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 000000 1125788999998776533 35799998766666553 3467789999999999995555554
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.+
T Consensus 158 ~~ 159 (218)
T PF05724_consen 158 YP 159 (218)
T ss_dssp S-
T ss_pred cC
Confidence 33
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=81.06 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=40.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|||+|||+|.++..++. .+.+++|+|+++.+++.|+++++..+.
T Consensus 176 ~VLDl~cG~G~~sl~la~-------------~~~~V~gvD~s~~av~~A~~n~~~~~l 220 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCAT-------------PGMQLTGIEISAEAIACAKQSAAELGL 220 (315)
T ss_pred EEEEccCCCCHHHHHHHh-------------cCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 799999999999999987 357899999999999999999876654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=77.44 Aligned_cols=75 Identities=8% Similarity=0.128 Sum_probs=59.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.++... ...+++++|+++.+++.|+++.. +.+|..+|+...++ .
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~--------~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~ 112 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYA--------KPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-D 112 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccC--------CCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-c
Confidence 79999999999999998865200 24689999999999999997643 35677888877665 4
Q ss_pred CCCceeeeeecccc
Q psy889 82 DSYSAYTIAFGIRN 95 (167)
Q Consensus 82 ~~fd~~~~~~~~~~ 95 (167)
..||.++..+|...
T Consensus 113 ~~FDlIIsNPPY~~ 126 (241)
T PHA03412 113 TLFDMAISNPPFGK 126 (241)
T ss_pred CCccEEEECCCCCC
Confidence 58998888888864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=82.71 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=70.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++. ...+++++|+++++++.|++...-..+ ..
T Consensus 153 rVLIIGgGdG~tlrelLk~~-----------~v~~It~VEIDpeVIelAr~~~~L~~~--------------------~~ 201 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYE-----------TVLHVDLVDLDGSMINMARNVPELVSL--------------------NK 201 (374)
T ss_pred EEEEECCCHHHHHHHHHhcC-----------CCCeEEEEeCCHHHHHHHHhccccchh--------------------cc
Confidence 79999999999988888754 357899999999999999962110000 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccc---cc--cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN---VT--RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~---~~--~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.|+ ..++.+...|... +......||+|++...-.. .. ....+++.+++.|+|||.+++.
T Consensus 202 ~~~~--------------DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 202 SAFF--------------DNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccCC--------------CCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 0000 1455665555543 2233456888877532110 01 1256788999999999998874
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=86.66 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=70.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH--HhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA--RDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
+|||+|||+|..+..++++- ...+++++|+++++++.++++. ..........
T Consensus 300 rVL~IG~G~G~~~~~ll~~~-----------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d--------------- 353 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYP-----------DVEQVTLVDLDPAMTELARTSPALRALNGGALDD--------------- 353 (521)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCC---------------
Confidence 79999999999999998743 2378999999999999999832 2111100011
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccccc-----HHHHHHHHHHhcCCCcEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~ 153 (167)
++++++..|..+. ...+++||+|++.......+. .+.+++.+++.|+|||.++
T Consensus 354 ---------------------prv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 354 ---------------------PRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred ---------------------CceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 3455555554432 222356788877543222221 2457889999999999998
Q ss_pred EE
Q psy889 154 CL 155 (167)
Q Consensus 154 ~~ 155 (167)
+.
T Consensus 413 ~~ 414 (521)
T PRK03612 413 VQ 414 (521)
T ss_pred Ee
Confidence 74
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=73.54 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=68.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|-.++.++.... ..+++.+|.++ .++..+.+++....
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~-----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~--------------------- 93 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFG-----------AARVVLTDYNE-VLELLRRNIELNGS--------------------- 93 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T------------SEEEEEE-S--HHHHHHHHHHTT-----------------------
T ss_pred ceEEEECCccchhHHHHHhccC-----------CceEEEeccch-hhHHHHHHHHhccc---------------------
Confidence 4799999999999999888642 67899999999 99999988864321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....++.+...+-.+. ......||+|+.+.++........+++.+.+.|+++|.+++..
T Consensus 94 -----------------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 94 -----------------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -----------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred -----------------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 0013455555543221 1234579999999998888888999999999999998866644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=76.27 Aligned_cols=103 Identities=19% Similarity=0.121 Sum_probs=76.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||||||.|.+...+|+.. +...++|+|+....+..+.+++...+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~n-----------P~~nfiGiEi~~~~v~~~l~k~~~~~l---------------------- 97 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKN-----------PEKNFLGIEIRVPGVAKALKKIKELGL---------------------- 97 (227)
T ss_pred EEEEECCCCCHHHHHHHHHC-----------CCCCEEEEEEehHHHHHHHHHHHHcCC----------------------
Confidence 58999999999999999987 477899999999999999999988775
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC---CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.+.+.|+..+ -.++++.|-|..++---|.+. ....++.+.++|+|||
T Consensus 98 -------------------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG 158 (227)
T COG0220 98 -------------------KNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGG 158 (227)
T ss_pred -------------------CcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCC
Confidence 3555555554432 233346666655443222221 2466789999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.|.+.+
T Consensus 159 ~l~~aT 164 (227)
T COG0220 159 VLHFAT 164 (227)
T ss_pred EEEEEe
Confidence 998854
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-08 Score=73.43 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=38.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|||+|||+|.++..++... ..+++++|.++.+++.++++++..+.
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~------------a~~V~~vE~~~~a~~~a~~Nl~~~~~ 101 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRY------------AAGATLLEMDRAVAQQLIKNLATLKA 101 (199)
T ss_pred EEEEcCCCccHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 79999999999998755432 46899999999999999999876654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-08 Score=77.40 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=77.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|+++|..+..++..+. +.++++.+|.+++..+.|++.+...+.
T Consensus 81 k~iLEiGT~~GySal~la~al~----------~~g~v~tiE~~~~~~~~Ar~~~~~ag~--------------------- 129 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALP----------EDGKILAMDINRENYELGLPVIQKAGV--------------------- 129 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 3799999999999999998774 478999999999999999999987775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CC------CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PI------ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.++.++..+. +- ..++||+|++-. ........+..+.+.|+|||.++
T Consensus 130 -------------------~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 130 -------------------AHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred -------------------CCceEEEeccHHHHHHHHHhccccCCcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEE
Confidence 14566666654332 10 135799987743 13334567788899999999988
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 188 ~ 188 (247)
T PLN02589 188 Y 188 (247)
T ss_pred E
Confidence 7
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-08 Score=78.22 Aligned_cols=111 Identities=22% Similarity=0.193 Sum_probs=75.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccc-ccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~ 80 (167)
.|||.-||||++.+...- -+++++|+|++..|++-++.+++..+. ........ |+..+||+
T Consensus 200 ~vlDPFcGTGgiLiEagl-------------~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 200 LVLDPFCGTGGILIEAGL-------------MGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLDATNLPLR 261 (347)
T ss_pred EeecCcCCccHHHHhhhh-------------cCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecccccCCCC
Confidence 689999999999877643 389999999999999999999987653 12222333 66666666
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++||.+.+.+|. ++..-.... . -..-...+|..+.++|++||++++...
T Consensus 262 ~~~vdaIatDPPY-------Grst~~~~~---------~-----------l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPY-------GRSTKIKGE---------G-----------LDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCC-------Ccccccccc---------c-----------HHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6666666655554 111100000 0 011246788999999999999988553
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.5e-08 Score=73.26 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=37.2
Q ss_pred EeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 105 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 105 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+...|+.++|..+++.|++++...+. =++....+.|++|+|||||.|.+.|..
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEec
Confidence 45678889999999999998755543 245778999999999999999998865
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=78.39 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=53.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C--
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-- 78 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+. .++++..+|+.+. +
T Consensus 295 ~vLDl~cG~G~~sl~la~~-------------~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQ-------------AKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLETVLPKQ 356 (431)
T ss_pred EEEEcCCCcCHHHHHHHHh-------------CCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHHHHHHH
Confidence 7999999999999999874 45799999999999999999876543 2466666665542 1
Q ss_pred -CCCCCCceeeeeec
Q psy889 79 -IESDSYSAYTIAFG 92 (167)
Q Consensus 79 -~~~~~fd~~~~~~~ 92 (167)
+....||.+.+.++
T Consensus 357 ~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 357 PWAGQIPDVLLLDPP 371 (431)
T ss_pred HhcCCCCCEEEECcC
Confidence 22344555554444
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=70.19 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=69.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+.||.|.++..++++. ...+++++|+++.+++..+++++....
T Consensus 104 ~VlD~faGIG~f~l~~ak~~-----------~~~~V~A~d~Np~a~~~L~~Ni~lNkv---------------------- 150 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHG-----------KAKRVYAVDLNPDAVEYLKENIRLNKV---------------------- 150 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT------------SSEEEEEES-HHHHHHHHHHHHHTT-----------------------
T ss_pred EEEEccCCccHHHHHHhhhc-----------CccEEEEecCCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999865 377899999999999999999976554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.....|...+.. ...+|-|++.. .......+..+.+.+++||.+.+
T Consensus 151 ------------------~~~i~~~~~D~~~~~~-~~~~drvim~l----p~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 151 ------------------ENRIEVINGDAREFLP-EGKFDRVIMNL----PESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ------------------TTTEEEEES-GGG----TT-EEEEEE------TSSGGGGHHHHHHHEEEEEEEEE
T ss_pred ------------------CCeEEEEcCCHHHhcC-ccccCEEEECC----hHHHHHHHHHHHHHhcCCcEEEC
Confidence 2456777788766544 67788777753 23445677888999999998753
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-07 Score=70.35 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||++||.|.--+.++..... ....+...|.|+..++..++.++..+.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~---------~~~~i~LrDys~~Nv~~g~~li~~~gL--------------------- 186 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPE---------RPDSILLRDYSPINVEKGRALIAERGL--------------------- 186 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCC---------CCceEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 38999999999998887776631 136799999999999999999988776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhccccccc---HHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 154 (167)
...+.|...|..+ +.......++++.+..+..+++ +...++.+.+.+.|||+++.
T Consensus 187 -------------------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 187 -------------------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred -------------------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1223666665543 2333455788888877777766 67789999999999999988
Q ss_pred EeecccCCccC
Q psy889 155 LEFSHVNNSML 165 (167)
Q Consensus 155 ~~~~~~~~~~~ 165 (167)
+. .|.+|.+
T Consensus 248 Tg--QPwHPQl 256 (311)
T PF12147_consen 248 TG--QPWHPQL 256 (311)
T ss_pred cC--CCCCcch
Confidence 54 5555544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=68.52 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=56.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||||.+++..+-.. ..+++++|+++++++.++++.+.. .+++++..+|+....
T Consensus 48 ~V~DlG~GTG~La~ga~~lG------------a~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~~--- 106 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLG------------ASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDFR--- 106 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcC------------CcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhcC---
Confidence 59999999999999876532 468999999999999999999763 358899999987753
Q ss_pred CCCceeeeeecc
Q psy889 82 DSYSAYTIAFGI 93 (167)
Q Consensus 82 ~~fd~~~~~~~~ 93 (167)
..||.+.+++|.
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 334466666555
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-07 Score=67.28 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=65.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||..||+|.+....+.......+ .... ....++|+|+++.+++.++++++..+. .
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~-~~~~-~~~~~~g~Di~~~~v~~a~~N~~~ag~----~----------------- 87 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPP-LNDI-NELKIIGSDIDPKAVRGARENLKAAGV----E----------------- 87 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTST-TTH--CH--EEEEESSHHHHHHHHHHHHHTT-----C-----------------
T ss_pred EEeecCCCCCHHHHHHHHHhhCccc-cccc-ccccEEecCCCHHHHHHHHHHHHhccc----C-----------------
Confidence 6899999999999888766531110 0000 011389999999999999999987765 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc--------cccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN--------VTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..+.+...|..+++..++++|.|+++--+.. ..-...+++++.++|++...++
T Consensus 88 -------------------~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 88 -------------------DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp -------------------GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred -------------------CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 2345555555555544556666665322110 0113566789999999944443
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 149 ~ 149 (179)
T PF01170_consen 149 T 149 (179)
T ss_dssp E
T ss_pred E
Confidence 3
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=66.67 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=79.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|.|+|-+|.+++.+.- +...++.++.|++.+....+.+...
T Consensus 51 pVlElGPGTGV~TkaIL~~gv----------~~~~L~~iE~~~dF~~~L~~~~p~~------------------------ 96 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGV----------RPESLTAIEYSPDFVCHLNQLYPGV------------------------ 96 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCC----------CccceEEEEeCHHHHHHHHHhCCCc------------------------
Confidence 699999999999999999875 4778999999999999998876432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-----CCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-----PIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+|...+ ..+...||.|+|..-+.+++-. .+++.++...|.+||.++.
T Consensus 97 ----------------------~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 97 ----------------------NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ----------------------cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 2233332222 2445669999997776666653 4678999999999999999
Q ss_pred EeecccC
Q psy889 155 LEFSHVN 161 (167)
Q Consensus 155 ~~~~~~~ 161 (167)
..+++-+
T Consensus 155 ftYgp~s 161 (194)
T COG3963 155 FTYGPLS 161 (194)
T ss_pred EEecCCC
Confidence 8888443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=75.95 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..++. .+.+++++|+++.+++.++++.+..+. .++++..+|++.
T Consensus 236 ~vLDL~cG~G~~~l~la~-------------~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~ 292 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAG-------------PDTQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAK 292 (374)
T ss_pred EEEEccCCccHHHHHHhh-------------cCCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHH
Confidence 699999999999999986 357899999999999999999876554 145555555443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=78.65 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||+|||.|.+...++... +...++|+|+....+..+.++....+.
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~-----------p~~~~iGiE~~~~~~~~~~~~~~~~~l---------------------- 396 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMN-----------PDALFIGVEVYLNGVANVLKLAGEQNI---------------------- 396 (506)
T ss_pred eEEEECCCchHHHHHHHHhC-----------CCCCEEEEEeeHHHHHHHHHHHHHcCC----------------------
Confidence 48999999999999999877 478899999999999988888766554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...++..+ .++++++|.|.+++---|.+. -...++.+.++|+|||.
T Consensus 397 -------------------~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 397 -------------------TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred -------------------CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 3454444443321 144555666666543333221 24667899999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
+.+.+
T Consensus 458 i~~~T 462 (506)
T PRK01544 458 LVFAS 462 (506)
T ss_pred EEEEc
Confidence 98744
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.1e-07 Score=72.37 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|++.|+-|.++++.+.. .+..+++.|.++.-+...+.++++.+. .++.....|...++
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~---------~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMEN---------EGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAEL 223 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCC---------CCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccc
Confidence 47999999999999999998852 245569999999999999999999887 22444555544433
Q ss_pred -CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 -IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.....||.+++.-+=+....... +. +..+....-|+.-+ ..-..++|..+.+.|||||.|+++++
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr-------~P-d~~~~~~~~~i~~l------~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRR-------DP-DVKWRRTPEDIAEL------AKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ccccCcCcEEEECCCCCCCccccc-------Cc-cccccCCHHHHHHH------HHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 22223564444433322110000 00 00000000011111 12356888999999999999999776
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
+-
T Consensus 290 S~ 291 (355)
T COG0144 290 SL 291 (355)
T ss_pred CC
Confidence 63
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=71.77 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=67.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|.-+|.|+++..++..+. .++++|+|.++.+++.+++++.... .+++++.+++.+++
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~-----------~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLG-----------TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHL 85 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHH
Confidence 589999999999999998773 4889999999999999999886432 47889999988875
Q ss_pred --CCCCCCceeeeeeccccccC
Q psy889 79 --IESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~ 98 (167)
...+.+|.+....|.+.+..
T Consensus 86 ~~~~~~~vDgIl~DLGvSS~Ql 107 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVSSPQL 107 (305)
T ss_pred HhcCCCcccEEEEeccCCHhhc
Confidence 34467999999999988863
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=70.73 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=58.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. .+++++..+|+.+++++
T Consensus 32 ~VLEIG~G~G~lt~~L~~~-------------~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 32 PVLEIGPGKGALTDELAKR-------------AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred eEEEEeCccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCCch-
Confidence 6999999999999999884 45799999999999999987643 24789999999988765
Q ss_pred CCCceeeeeeccc
Q psy889 82 DSYSAYTIAFGIR 94 (167)
Q Consensus 82 ~~fd~~~~~~~~~ 94 (167)
.||.+..+.+..
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 378887777664
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-07 Score=74.14 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=70.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||++||+|..+..++.... ..+++++|+++.+++.++++++..+.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~-----------~~~V~a~Din~~Av~~a~~N~~~N~~---------------------- 106 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG-----------VEKVTLNDINPDAVELIKKNLELNGL---------------------- 106 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCC----------------------
Confidence 799999999999999988652 45799999999999999999875544
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+..+...|...+......||+|.+.- ......++..+.+.+++||+++++
T Consensus 107 -------------------~~~~v~~~Da~~~l~~~~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 -------------------ENEKVFNKDANALLHEERKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -------------------CceEEEhhhHHHHHhhcCCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 223344555433211134588886632 122345677777888999999986
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=73.56 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=71.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-++...+++. ..+++++|.|.- .+.|.+.+...+.
T Consensus 63 ~VlDVGcGtGILS~F~akAG------------A~~V~aVe~S~i-a~~a~~iv~~N~~---------------------- 107 (346)
T KOG1499|consen 63 TVLDVGCGTGILSMFAAKAG------------ARKVYAVEASSI-ADFARKIVKDNGL---------------------- 107 (346)
T ss_pred EEEEcCCCccHHHHHHHHhC------------cceEEEEechHH-HHHHHHHHHhcCc----------------------
Confidence 69999999999999999876 578999997764 4888888775544
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc---cccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN---VTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
...+.+.++..+++.++..++|+|++.+.=.+ -.-+..++--=-++|+|||.++
T Consensus 108 ------------------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 ------------------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------------------cceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 13466777777666555678999988553221 1234455544468999999886
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=67.04 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=63.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+.++|+|||.|.++...+. . ....++|+|+++++++.++++.+.... +..+...|+..+-+.
T Consensus 50 kkl~DLgcgcGmLs~a~sm-~-----------~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~ 111 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSM-P-----------KNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK 111 (185)
T ss_pred cchhhhcCchhhhHHHhhc-C-----------CCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc
Confidence 4689999999999866544 2 145699999999999999999987765 568899999999999
Q ss_pred CCCCceeeeeeccc
Q psy889 81 SDSYSAYTIAFGIR 94 (167)
Q Consensus 81 ~~~fd~~~~~~~~~ 94 (167)
+..||.+++..+.-
T Consensus 112 ~g~fDtaviNppFG 125 (185)
T KOG3420|consen 112 GGIFDTAVINPPFG 125 (185)
T ss_pred CCeEeeEEecCCCC
Confidence 99999999987763
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-07 Score=71.93 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. .+++++|+++.+++.++++... +++++..+|+..++++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~-------------~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERA-------------AKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVDLS 102 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhC-------------CcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCCHH
Confidence 379999999999999999854 4899999999999999876531 4788999999998765
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
...++.++...+.
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4324666666654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=69.25 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=69.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
..+|..-|.|+++.+++..+. ...+++++|.++.+++.|++++.... +++.++.+.+.++.
T Consensus 26 iyiD~TlG~GGHS~~iL~~l~----------~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 26 IYIDGTLGAGGHSRAILEKLP----------DLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNFANLAEAL 89 (314)
T ss_pred EEEEecCCCcHhHHHHHHhCC----------CCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcHHHHHHHH
Confidence 468999999999999999885 36789999999999999999986543 48899999988875
Q ss_pred --CCCCCCceeeeeeccccccC
Q psy889 79 --IESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~ 98 (167)
..-..+|.++...|.+.+..
T Consensus 90 ~~~~i~~vDGiL~DLGVSS~QL 111 (314)
T COG0275 90 KELGIGKVDGILLDLGVSSPQL 111 (314)
T ss_pred HhcCCCceeEEEEeccCCcccc
Confidence 44568999999999999873
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.5e-07 Score=70.75 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=87.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||=.|||.|.++..++. .+..+.|.|.|-.|+-..+-.+..... .....=-||-
T Consensus 58 ~~VLVPGsGLGRLa~Eia~-------------~G~~~~gnE~S~~Mll~s~fiLn~~~~-----------~~~~~I~Pf~ 113 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAK-------------LGYAVQGNEFSYFMLLASNFILNHCSQ-----------PNQFTIYPFV 113 (270)
T ss_pred cEEEEcCCCcchHHHHHhh-------------ccceEEEEEchHHHHHHHHHHHcccCC-----------CCcEEEecce
Confidence 3799999999999999998 467899999999998777655442110 0001111343
Q ss_pred CCCCceeeeeeccccccCC----------CCceEEeecccCCCCCCc---cchhhHhhhhcccccccHHHHHHHHHHhcC
Q psy889 81 SDSYSAYTIAFGIRNIDIP----------NPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLK 147 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lk 147 (167)
...-.....+..+|.+..| ..++....+|...+...+ ++||.|+..+.++--+++-..++.|+++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 3333333333333333211 246777778877665444 789999888877777889999999999999
Q ss_pred CCcEEE
Q psy889 148 PGGRFL 153 (167)
Q Consensus 148 pgG~l~ 153 (167)
|||+.+
T Consensus 194 pgG~WI 199 (270)
T PF07942_consen 194 PGGYWI 199 (270)
T ss_pred cCCEEE
Confidence 999765
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=65.47 Aligned_cols=47 Identities=13% Similarity=-0.058 Sum_probs=40.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||++||+|.++..++... ..+++++|.++.+++.++++++..+.
T Consensus 51 ~~vLDLfaGsG~lglea~srg------------a~~v~~vE~~~~a~~~~~~N~~~~~~ 97 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRG------------AKVAFLEEDDRKANQTLKENLALLKS 97 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 379999999999999999854 34799999999999999999876654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=73.90 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=69.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-CC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-l~- 78 (167)
.+|||+.|-||+++.+.+... ..+++.+|.|..+++.+++++...+. ...++++..+|+.. +.
T Consensus 125 krvLnlFsYTGgfsv~Aa~gG------------A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGG------------AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTT------------ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHH
Confidence 489999999999999887632 34799999999999999999875543 23455666665433 11
Q ss_pred C-CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 I-ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 ~-~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
. ..+.|| ++..|.+.+ ..+.+++ ..+...++..+.++|+|||.|+++..
T Consensus 190 ~~~~~~fD-------------------~IIlDPPsF--~k~~~~~---------~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 190 LKKGGRFD-------------------LIILDPPSF--AKSKFDL---------ERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHTT-EE-------------------EEEE--SSE--ESSTCEH---------HHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HhcCCCCC-------------------EEEECCCCC--CCCHHHH---------HHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 0 112233 333333222 1222332 23566788899999999999987665
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
++
T Consensus 240 s~ 241 (286)
T PF10672_consen 240 SH 241 (286)
T ss_dssp -T
T ss_pred Cc
Confidence 43
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.3e-07 Score=72.73 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||.+|+|.|..++.++++. ...+++.+|+++.+++.+++.+..... ....
T Consensus 106 ~VLiiGgG~G~~~re~l~~~-----------~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~d----------------- 156 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHK-----------TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCD----------------- 156 (336)
T ss_pred EEEEECCCchHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhcccccc-cccC-----------------
Confidence 79999999999999988864 256899999999999999987642110 0011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccc---cc---cHHHHHH-HHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN---VT---RIDKALS-EAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~---~~---~~~~~l~-~~~~~LkpgG~l~ 153 (167)
.++.+...|.... ......||+|++-..-.. .+ -...+++ .+.+.|+|||.++
T Consensus 157 -------------------prv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 157 -------------------KRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred -------------------CceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 3445554444331 222356777776421100 00 0234566 7899999999987
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 218 ~ 218 (336)
T PLN02823 218 T 218 (336)
T ss_pred E
Confidence 6
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-07 Score=78.93 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 111 EELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 111 ~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+|+++..||+|-|+..+. |.+.-..+|-++.|+|+|||+++.+.
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecC
Confidence 45788999999999977654 55555668889999999999998843
|
; GO: 0008168 methyltransferase activity |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=76.27 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=71.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-++...+++..... ...++++++-++.++...+++....++
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~-------~a~~VyAVEkn~~A~~~l~~~v~~n~w---------------------- 239 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAG-------GAVKVYAVEKNPNAVVTLQKRVNANGW---------------------- 239 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHC-------CESEEEEEESSTHHHHHHHHHHHHTTT----------------------
T ss_pred EEEEeCCCccHHHHHHHHHHHHhC-------CCeEEEEEcCCHhHHHHHHHHHHhcCC----------------------
Confidence 599999999999888777542100 246899999999988888777555444
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
+.++.++..|++++..+. ++|+|++-.. +..-......+....+.|||||.++
T Consensus 240 ------------------~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 240 ------------------GDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ------------------TTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ------------------CCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 267899999998876543 7899988432 1111234456777889999999886
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-07 Score=70.63 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=78.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..++.++++. ...+++.+|++++.++.+++.+.....
T Consensus 79 ~VLiiGgGdG~tlRevlkh~-----------~ve~i~~VEID~~Vi~~ar~~l~~~~~---------------------- 125 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHL-----------PVERITMVEIDPAVIELARKYLPEPSG---------------------- 125 (282)
T ss_pred eEEEECCCccHHHHHHHhcC-----------CcceEEEEEcCHHHHHHHHHhccCccc----------------------
Confidence 79999999999999999987 378899999999999999988764431
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+| +++.++..|..++ .....+||+|++-..-. .. .....++.+++.|+++|.++.-
T Consensus 126 ~~~d---------------pRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 126 GADD---------------PRVEIIIDDGVEFLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ccCC---------------CceEEEeccHHHHHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 0001 6777777776553 22334799998855322 11 1367789999999999999884
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-07 Score=69.83 Aligned_cols=36 Identities=19% Similarity=-0.010 Sum_probs=31.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (167)
+|||+|||+|.++..+++.. ..+++++|+++.++..
T Consensus 78 ~vlDiG~gtG~~t~~l~~~g------------a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKG------------AKEVYGVDVGYNQLAE 113 (228)
T ss_pred EEEEcccCCCHHHHHHHHcC------------CCEEEEEeCCHHHHHH
Confidence 69999999999999999852 4679999999988876
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=71.28 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=80.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+.+|.|.+++.++.+.. ..++++|+++.+++..++++.....
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~g~------------~~V~A~diNP~A~~~L~eNi~LN~v---------------------- 236 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKKGR------------PKVYAIDINPDAVEYLKENIRLNKV---------------------- 236 (341)
T ss_pred EEEEccCCcccchhhhhhcCC------------ceEEEEecCHHHHHHHHHHHHhcCc----------------------
Confidence 799999999999999998762 3399999999999999999976555
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...+....+|...+....+.+|-|++.. .......+..+.+.+++||.+.+.++++.+
T Consensus 237 ------------------~~~v~~i~gD~rev~~~~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 237 ------------------EGRVEPILGDAREVAPELGVADRIIMGL----PKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------------------cceeeEEeccHHHhhhccccCCEEEeCC----CCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 1346667777766655446778887754 344566677777888889999888877655
Q ss_pred C
Q psy889 162 N 162 (167)
Q Consensus 162 ~ 162 (167)
.
T Consensus 295 ~ 295 (341)
T COG2520 295 D 295 (341)
T ss_pred h
Confidence 4
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-07 Score=70.80 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. .+++++..+|+.+.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~-------------~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQL-------------AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDALKTEF-- 99 (294)
T ss_pred EEEEecCchHHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHhhhcc--
Confidence 6999999999999999873 46799999999999999998865432 3578999999987654
Q ss_pred CCCceeeeeecc
Q psy889 82 DSYSAYTIAFGI 93 (167)
Q Consensus 82 ~~fd~~~~~~~~ 93 (167)
..||.++...++
T Consensus 100 ~~~d~VvaNlPY 111 (294)
T PTZ00338 100 PYFDVCVANVPY 111 (294)
T ss_pred cccCEEEecCCc
Confidence 357777776665
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=70.83 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~ 78 (167)
.|||++.|-||.++.+.+.. ++ +++.+|.|...++.|+++.+-.+. ...+.+|+.+|.-+. .
T Consensus 219 krvLNlFsYTGgfSv~Aa~g-------------GA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALG-------------GASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLR 282 (393)
T ss_pred CeEEEecccCcHHHHHHHhc-------------CCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHH
Confidence 37999999999999998873 55 899999999999999999976554 333455555553331 1
Q ss_pred ---CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 79 ---IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
-.+..||.+++ |.+...-. +-+ .+....+...++..+.++|+|||.++++
T Consensus 283 ~~~~~g~~fDlIil-------------------DPPsF~r~--k~~------~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 283 KAERRGEKFDLIIL-------------------DPPSFARS--KKQ------EFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred HHHhcCCcccEEEE-------------------CCcccccC--ccc------chhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11223332222 22111100 000 0111345667788999999999999987
Q ss_pred eecc
Q psy889 156 EFSH 159 (167)
Q Consensus 156 ~~~~ 159 (167)
..+.
T Consensus 336 s~~~ 339 (393)
T COG1092 336 SCSR 339 (393)
T ss_pred ecCC
Confidence 6543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-06 Score=57.02 Aligned_cols=105 Identities=28% Similarity=0.331 Sum_probs=68.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
++|+|||+|..+ .+..... ....++++|.+..++..++..... ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-~~----------------------- 96 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------RGAYVVGVDLSPEMLALARARAEG-AG----------------------- 96 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------CCceEEEEeCCHHHHHHHHhhhhh-cC-----------------------
Confidence 799999999987 3333221 124788999999999985554432 21
Q ss_pred CCceeeeeeccccccCCCCc-eEEeecccCC--CCCCc-cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 83 SYSAYTIAFGIRNIDIPNPR-LRFLEANAEE--LPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.. +.+...+... .++.. ..||++ +.....+.......+.++.+.++|+|.+++....
T Consensus 97 ------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 97 ------------------LGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ------------------CCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 3444444443 45554 478998 5444333323788999999999999999997765
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 158 ~~~ 160 (257)
T COG0500 158 RDG 160 (257)
T ss_pred CCC
Confidence 443
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-07 Score=74.11 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=87.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|.....+...- ...++|.|.++..+..+.........
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~------------~~~~~Gl~~n~~e~~~~~~~~~~~~l---------------------- 158 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFK------------KAGVVGLDNNAYEAFRANELAKKAYL---------------------- 158 (364)
T ss_pred cccccCcCcCchhHHHHHhc------------cCCccCCCcCHHHHHHHHHHHHHHHh----------------------
Confidence 47899999999999987643 67899999999888877766654443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..+-.++..+.-+.++.+.+||.+.+..+..+.++...++++++++++|||+++..++...
T Consensus 159 ------------------~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 159 ------------------DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ------------------hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 1233446667777788899999999999999999999999999999999999998776643
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.2e-07 Score=66.84 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+.||+|.+++..+... ..+++.+|.++..+...+++++..+.
T Consensus 44 ~~vLDLFaGSGalGlEALSRG------------A~~v~fVE~~~~a~~~i~~N~~~l~~ 90 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRG------------AKSVVFVEKNRKAIKIIKKNLEKLGL 90 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-------------SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred CeEEEcCCccCccHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 379999999999999888743 35899999999999999999987765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=68.39 Aligned_cols=55 Identities=25% Similarity=0.464 Sum_probs=44.5
Q ss_pred eEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 103 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
-.+...|+..+|..+.+.|++++-..+. -.++...+.+++|+|++||.+++.+..
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehh
Confidence 3456678888999999999987644332 467888999999999999999998864
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=68.30 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=69.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+.++.+.++ ...+++++|.|+.|++.++...+...... ..+
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~----------~~~~~~~vd~s~~~~~l~~~l~~~~~~~~----~~~------------ 88 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWP----------SLKEYTCVDRSPEMLELAKRLLRAGPNNR----NAE------------ 88 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhc----------CceeeeeecCCHHHHHHHHHHHhcccccc----cch------------
Confidence 3799999999998888877774 25679999999999999998765432200 000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.......+. .+. ...|+|++++++..+++ ...+++++++.+.+ .|+++|-+
T Consensus 89 ---------------------~~~~~~~~~--~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 89 ---------------------WRRVLYRDF--LPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred ---------------------hhhhhhccc--ccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 000000111 111 12399999998887766 34555666666654 88888876
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 142 t~~ 144 (274)
T PF09243_consen 142 TPA 144 (274)
T ss_pred ChH
Confidence 654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=69.10 Aligned_cols=82 Identities=11% Similarity=-0.069 Sum_probs=60.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccc-ccccc--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLE-ANAEE-- 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~d~~~-- 76 (167)
.+|||+|||+|.+...++... .+.+++|+|+++.+++.|+++++.. .. .++++... .+...
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~-----------~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHE-----------YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIF 180 (321)
T ss_pred ceEEEecCCccHHHHHHHhhC-----------CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhh
Confidence 379999999998888777655 3788999999999999999999765 22 23454432 22222
Q ss_pred --CCCCCCCCceeeeeecccccc
Q psy889 77 --LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 --l~~~~~~fd~~~~~~~~~~~~ 97 (167)
+..+.+.||++.+.+|...-.
T Consensus 181 ~~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 181 KGIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred hcccccCCceEEEEeCCCCcCcc
Confidence 223577899999999987543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-06 Score=63.65 Aligned_cols=98 Identities=24% Similarity=0.234 Sum_probs=78.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+++|+|+|.|-=+..++-.. +..+++.+|.+..-+...+.-....+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-----------p~~~~~LvEs~~KK~~FL~~~~~~L~L---------------------- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-----------PDLQVTLVESVGKKVAFLKEVVRELGL---------------------- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH------------TTSEEEEEESSHHHHHHHHHHHHHHT-----------------------
T ss_pred eEEecCCCCCChhHHHHHhC-----------CCCcEEEEeCCchHHHHHHHHHHHhCC----------------------
Confidence 68999999998888877666 478899999999999999988887776
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+.....++ +.....||+|++.. +..+..++.-+...+++||.+++.-
T Consensus 98 -------------------~nv~v~~~R~E~-~~~~~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 98 -------------------SNVEVINGRAEE-PEYRESFDVVTARA----VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------------------SSEEEEES-HHH-TTTTT-EEEEEEES----SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CCEEEEEeeecc-cccCCCccEEEeeh----hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 567777777766 55567899998854 6778888888999999999998853
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-05 Score=59.14 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=73.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
++|+|||+|-.+-.+++... ++..+.++|+++.+++..++-+..... +..-+.+|...
T Consensus 47 ~lEIG~GSGvvstfL~~~i~----------~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~------ 104 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIG----------PQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLS------ 104 (209)
T ss_pred EEEecCCcchHHHHHHHhcC----------CCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHh------
Confidence 79999999999999988775 478899999999999998877765443 11111111111
Q ss_pred CCceeeeeeccccccCCCCceEEeecccCCCCCCccch--hhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 83 SYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSY--SAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+++ .++++++..+..-+|-.+... .-+-..+. -....-+++++.++-..|.|.|.+++....
T Consensus 105 ---------~l~-----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 105 ---------GLR-----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred ---------hhc-----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 111 145666666655444332222 11111111 112223677888888999999999986544
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=64.41 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=77.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
..||+|+|+|.++..++..+.. ++....|+|.-++.++.+++++......+..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~---------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~------------------ 137 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGA---------TGGNVHGIEHIPELVEYSKKNLDKDITTSES------------------ 137 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcC---------CCccccchhhhHHHHHHHHHHHHhhccCchh------------------
Confidence 5799999999999999887752 3555699999999999999998754321000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
++ ....+++.++.+|..........||.|.+.. .....-+++...|++||.+++.-
T Consensus 138 --~~-----------~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 138 --SS-----------KLKRGELSIVVGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --hh-----------hhccCceEEEeCCccccCCccCCcceEEEcc------CccccHHHHHHhhccCCeEEEee
Confidence 00 0012567778888877766778899998853 23344456777889999999843
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-07 Score=68.49 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=69.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.++||+|+|.|.++.++++.+ .++++++.|..|....+++--
T Consensus 114 ~~lLDlGAGdGeit~~m~p~f-------------eevyATElS~tMr~rL~kk~y------------------------- 155 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTF-------------EEVYATELSWTMRDRLKKKNY------------------------- 155 (288)
T ss_pred eeEEeccCCCcchhhhhcchH-------------HHHHHHHhhHHHHHHHhhcCC-------------------------
Confidence 479999999999999999865 569999999999887775421
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCC-CcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~ 154 (167)
.++. ..+....+-+||+|.|.+.+..-.+.-++++.++.+|+| +|+.++
T Consensus 156 -----------------------nVl~--~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 156 -----------------------NVLT--EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -----------------------ceee--ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 1111 111112234599999999888777888999999999999 898876
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=65.93 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=36.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.+|||+|||+|.++..+++.. .+++++|+++.+++.++++..
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~-------------~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRA-------------KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-------------CcEEEEECCHHHHHHHHHHhC
Confidence 379999999999999999854 459999999999999987663
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-06 Score=62.90 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=76.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|.-+|.-+..++..++ .+++++++|++++..+.+.+..+..+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp----------~dGrv~a~eid~~~~~~~~~~~k~agv---------------------- 123 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALP----------EDGRVVAIEIDADAYEIGLELVKLAGV---------------------- 123 (237)
T ss_pred eEEEEecccCHHHHHHHHhcC----------CCceEEEEecChHHHHHhHHHHHhccc----------------------
Confidence 789999999999999999886 589999999999999999877776665
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-C-----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.....+ + ....++||.++.-. +...--....++.+++|+||.+++
T Consensus 124 ------------------~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 124 ------------------DHKITFIEGPALESLDELLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ------------------cceeeeeecchhhhHHHHHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEE
Confidence 2466666654332 1 13467889886632 222233677899999999999998
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-07 Score=69.26 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=64.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||.|.|-|..+...++ +++ +++.++.++..++.|+-+.-....+.
T Consensus 137 rVLDtC~GLGYtAi~a~~-------------rGA~~VitvEkdp~VLeLa~lNPwSr~l~~------------------- 184 (287)
T COG2521 137 RVLDTCTGLGYTAIEALE-------------RGAIHVITVEKDPNVLELAKLNPWSRELFE------------------- 184 (287)
T ss_pred EeeeeccCccHHHHHHHH-------------cCCcEEEEEeeCCCeEEeeccCCCCccccc-------------------
Confidence 799999999999999888 456 99999999999999986642222210
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhh---hcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.+++++.+|..++ .+.+.+||+|+.- +++..----..+-.+++|+|||||.++=
T Consensus 185 --------------------~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 185 --------------------IAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred --------------------cccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 1234444444332 2444455555431 0000000124566899999999999874
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-06 Score=70.82 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=45.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..+++.. .+++++|.++.+++.+++++...+. .++++..+|+..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~-------------~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~~ 265 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF-------------RRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAEE 265 (362)
T ss_pred eEEEEeccccHHHHHHHhhC-------------CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHHH
Confidence 69999999999999888743 5799999999999999999876554 245555555443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-06 Score=67.36 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|++.|+-+.++++.+. ..+++++.|++..-+...+.+.++.+. .++.....|.....
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~----------~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMG----------NKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPK 151 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTT----------TTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHH
T ss_pred ccccccccCCCCceeeeeeccc----------chhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeecccccccc
Confidence 3699999999999999999885 368999999999999999999988776 22333334433331
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh--hhcccc-cccHHHHHHHHHHhc----CCCcE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI--AFGIRN-VTRIDKALSEAYRVL----KPGGR 151 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~--~~~~~~-~~~~~~~l~~~~~~L----kpgG~ 151 (167)
.....||.+.+.-+=+.... -....|.-.. ..-+.. .....++|+.+.+.+ ||||+
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~-----------------i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGT-----------------IRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGG-----------------TTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred ccccccchhhcCCCccchhh-----------------hhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 22223443333322221100 0000111111 000001 122568899999999 99999
Q ss_pred EEEEeec
Q psy889 152 FLCLEFS 158 (167)
Q Consensus 152 l~~~~~~ 158 (167)
+++++++
T Consensus 215 lvYsTCS 221 (283)
T PF01189_consen 215 LVYSTCS 221 (283)
T ss_dssp EEEEESH
T ss_pred EEEEecc
Confidence 9997765
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-06 Score=70.17 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=45.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..+++.. .+++++|+++.+++.+++++...+. .++++..+|+++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-------------~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~~ 256 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-------------RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAEE 256 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-------------CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHHH
Confidence 69999999999999888754 4799999999999999999876543 245555555544
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-06 Score=66.00 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=70.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+...... ..
T Consensus 79 ~VLiiGgG~G~~~~ell~~~-----------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~------------------ 128 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHP-----------PVESITVVEIDPEVVELARKYFPEFSEG-LD------------------ 128 (246)
T ss_dssp EEEEEESTTSHHHHHHTTST-----------T-SEEEEEES-HHHHHHHHHHTHHHHTT-GG------------------
T ss_pred ceEEEcCCChhhhhhhhhcC-----------CcceEEEEecChHHHHHHHHhchhhccc-cC------------------
Confidence 79999999999999998765 2578999999999999999877543320 01
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCcc-chhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESD-SYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+++.++..|.... .-... .||+|+.-..-..-+ -....++.+.+.|+|||.+++-
T Consensus 129 ------------------d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 129 ------------------DPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp ------------------STTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 14556655554332 11122 677776632211111 1357788999999999999874
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 191 ~ 191 (246)
T PF01564_consen 191 A 191 (246)
T ss_dssp E
T ss_pred c
Confidence 4
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-06 Score=61.56 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
.|+|++||.|+.+..+++. ..+++++|+++..++.++.+++..+. +.+++++.+|..++. +
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-------------~~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~ 64 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-------------FDRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRL 64 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-------------T-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB
T ss_pred EEEEeccCcCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhc
Confidence 6999999999999999995 46799999999999999999998875 568999999988863 3
Q ss_pred CCCC-Cceeeeeecc
Q psy889 80 ESDS-YSAYTIAFGI 93 (167)
Q Consensus 80 ~~~~-fd~~~~~~~~ 93 (167)
.... ||.+-+++|-
T Consensus 65 ~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 65 KSNKIFDVVFLSPPW 79 (163)
T ss_dssp ------SEEEE---B
T ss_pred cccccccEEEECCCC
Confidence 3333 7888888766
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=64.52 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.|+|+|||+|.-+..+++++...- ...+|+++|+|.++++.+.+++.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~-------~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK-------KSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC-------CCceEEEEECCHHHHHHHHHhhh
Confidence 689999999999999999884100 25789999999999999999886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.9e-06 Score=65.30 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
..+|+|+|.|.++..++.++ .++-+++.+...+..+...+. .+
T Consensus 180 ~avDvGgGiG~v~k~ll~~f-------------p~ik~infdlp~v~~~a~~~~-~g----------------------- 222 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKY-------------PHIKGINFDLPFVLAAAPYLA-PG----------------------- 222 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhC-------------CCCceeecCHHHHHhhhhhhc-CC-----------------------
Confidence 46899999999999999854 457788888888777776553 11
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.....|+-+ +| +-|+|++.+++|+++| ..++|++++.-|+|||.+++.|.-
T Consensus 223 ---------------------V~~v~gdmfq~~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 223 ---------------------VEHVAGDMFQDTP----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred ---------------------cceecccccccCC----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 3334444433 33 3469999999998876 568899999999999999999986
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 278 ~p~ 280 (342)
T KOG3178|consen 278 TPE 280 (342)
T ss_pred CCC
Confidence 554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=62.72 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=69.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||=+|+|-|..++.++++- .+++-+|+++..++.+++.+.....
T Consensus 74 k~VLIiGGGDGg~~REvLkh~-------------~~v~mVeID~~Vv~~~k~~lP~~~~--------------------- 119 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKYD-------------THVDFVQADEKILDSFISFFPHFHE--------------------- 119 (262)
T ss_pred CeEEEEcCCchHHHHHHHCcC-------------CeeEEEECCHHHHHHHHHHCHHHHH---------------------
Confidence 379999999999999999862 3899999999999999987654321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.|+ .+++.+... .. ....++||+|++-.. ......+.+++.|+|||.++.
T Consensus 120 --~~~--------------DpRv~l~~~-~~--~~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 120 --VKN--------------NKNFTHAKQ-LL--DLDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred --hhc--------------CCCEEEeeh-hh--hccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 011 245555431 11 112357999987432 235667889999999999987
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-06 Score=70.34 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=59.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|.--|.|+++.++++++. +++++|+|.++.+++.+++++... .++..+..+++.++.
T Consensus 23 ~~vD~T~G~GGHS~aiL~~~~-----------~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 23 IYVDCTFGGGGHSKAILEKLP-----------NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-----------T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GGGHHHHH
T ss_pred eEEeecCCcHHHHHHHHHhCC-----------CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHHHHHHHH
Confidence 478999999999999999884 699999999999999999877543 358889999988875
Q ss_pred --C-CCCCCceeeeeecccccc
Q psy889 79 --I-ESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 --~-~~~~fd~~~~~~~~~~~~ 97 (167)
. ....+|.++...|.+.+.
T Consensus 86 ~~~~~~~~~dgiL~DLGvSS~Q 107 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGVSSMQ 107 (310)
T ss_dssp HHTTTTS-EEEEEEE-S--HHH
T ss_pred HHccCCCccCEEEEccccCHHH
Confidence 4 567999999999998886
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=67.73 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=64.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
++++|+-||.|.+++.++. ...+++|+|+++++++.|+++++..+. .|+++..+++++...
T Consensus 295 ~~vlDlYCGvG~f~l~lA~-------------~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAK-------------RVKKVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGDAEEFTPA 356 (432)
T ss_pred CEEEEeccCCChhhhhhcc-------------cCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHHhhh
Confidence 4799999999999999996 367899999999999999999987665 458899899888753
Q ss_pred --CCCCCceeeeeeccccc
Q psy889 80 --ESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 80 --~~~~fd~~~~~~~~~~~ 96 (167)
.+..||.++..++....
T Consensus 357 ~~~~~~~d~VvvDPPR~G~ 375 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGA 375 (432)
T ss_pred ccccCCCCEEEECCCCCCC
Confidence 34577877777777543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=65.15 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=70.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+.||+|..++.++.... -..++++.|+++.+++.++++++....
T Consensus 47 ~vLD~faGsG~rgir~a~e~~----------ga~~Vv~nD~n~~Av~~i~~N~~~N~~---------------------- 94 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIE----------GVREVFANDINPKAVESIKNNVEYNSV---------------------- 94 (374)
T ss_pred EEEECCCchhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHhCC----------------------
Confidence 699999999999999998642 135799999999999999999875443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|...+. .....||+|..-- .......+..+.+.+++||.++++
T Consensus 95 -------------------~~~~v~~~Da~~~l~~~~~~fDvIdlDP----fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 95 -------------------ENIEVPNEDAANVLRYRNRKFHVIDIDP----FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------------------CcEEEEchhHHHHHHHhCCCCCEEEeCC----CCCcHHHHHHHHHhcccCCEEEEE
Confidence 23444444443321 1123577775521 223346788889999999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=63.48 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-+++..+++. ..++++++-| .|.+.|++.......
T Consensus 180 iVlDVGaGSGILS~FAaqAG------------A~~vYAvEAS-~MAqyA~~Lv~~N~~---------------------- 224 (517)
T KOG1500|consen 180 IVLDVGAGSGILSFFAAQAG------------AKKVYAVEAS-EMAQYARKLVASNNL---------------------- 224 (517)
T ss_pred EEEEecCCccHHHHHHHHhC------------cceEEEEehh-HHHHHHHHHHhcCCc----------------------
Confidence 58999999999999988865 5789999955 588888877754322
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc---ccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.+-.+++.++ .+.|++++.-. +-+-.-++..+ .++++|+|.|.++=
T Consensus 225 ------------------~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 225 ------------------ADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFP 280 (517)
T ss_pred ------------------cceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccC
Confidence 25667777766665543 45687776221 11111122222 35699999998763
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.8e-05 Score=63.29 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=83.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
||||+|+..|+-|.+++..++ ..+.+++.|.+..-+...++++.+.++ .+......|.++.|
T Consensus 244 RIlDmcAAPGGKTt~IAalMk----------n~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMK----------NTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDGREFPEKE 308 (460)
T ss_pred eecchhcCCCchHHHHHHHHc----------CCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCcccccccc
Confidence 899999999999999999886 478899999999999999999988886 34455555555554
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
|+. +||.+++.-+=+... +..... .+.......|+.- ...-.+++|..+.+.+++||+|++++++
T Consensus 309 ~~~-~fDRVLLDAPCSGtg-----vi~K~~---~vkt~k~~~di~~------~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 309 FPG-SFDRVLLDAPCSGTG-----VISKDQ---SVKTNKTVKDILR------YAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCc-ccceeeecCCCCCCc-----cccccc---ccccchhHHHHHH------hHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 444 666555543333211 000000 0000000111111 1223578889999999999999997766
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
-
T Consensus 374 I 374 (460)
T KOG1122|consen 374 I 374 (460)
T ss_pred c
Confidence 3
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=61.24 Aligned_cols=87 Identities=7% Similarity=0.019 Sum_probs=51.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-CC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~ 80 (167)
+|+|.+||+|.+..++.+++.... .......++|+|+++.++..++.++.-.+. .........+|...-+ +.
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~----~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKR----NKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCH----HHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBGCEEEES-TTTSHSCT
T ss_pred eeechhhhHHHHHHHHHHhhcccc----cccccceeEeecCcHHHHHHHHhhhhhhcc---ccccccccccccccccccc
Confidence 699999999999988887541000 000267899999999999999887654332 1112234445543332 33
Q ss_pred -CCCCceeeeeecccc
Q psy889 81 -SDSYSAYTIAFGIRN 95 (167)
Q Consensus 81 -~~~fd~~~~~~~~~~ 95 (167)
...||.+++.+|...
T Consensus 122 ~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp ST--EEEEEEE--CTC
T ss_pred cccccccccCCCCccc
Confidence 688998888888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=62.73 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=75.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|... ... +...++++|++...+.-+++.
T Consensus 48 v~~d~gCGngky~-----~~~----------p~~~~ig~D~c~~l~~~ak~~---------------------------- 84 (293)
T KOG1331|consen 48 VGLDVGCGNGKYL-----GVN----------PLCLIIGCDLCTGLLGGAKRS---------------------------- 84 (293)
T ss_pred eeeecccCCcccC-----cCC----------CcceeeecchhhhhccccccC----------------------------
Confidence 3799999997541 110 256789999998887777642
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc---HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+......+|+..+|....+||..+...++||+.. -.++++++.|+++|||..++..+.
T Consensus 85 -------------------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 85 -------------------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred -------------------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 1124566788888999999999999999998865 467889999999999999887766
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 146 ~~q 148 (293)
T KOG1331|consen 146 LEQ 148 (293)
T ss_pred hhc
Confidence 443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.3e-05 Score=65.70 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=41.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCC-------------------------------CCCCCcEEEeeCChHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS-------------------------------EHCAPHVTVADINRAMLDVG 50 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~~D~s~~~~~~a 50 (167)
.++|.+||+|.+....+......++.... +....+++|+|+++.+++.|
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAA 272 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHH
Confidence 68999999999998876643211110000 01134799999999999999
Q ss_pred HHHHHhccc
Q psy889 51 EQRARDLFK 59 (167)
Q Consensus 51 ~~~~~~~~~ 59 (167)
++++...+.
T Consensus 273 ~~N~~~~g~ 281 (702)
T PRK11783 273 RKNARRAGV 281 (702)
T ss_pred HHHHHHcCC
Confidence 999987765
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.4e-05 Score=63.09 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|||+.||+|.++..+++. ..+++|+|+++.+++.|++++...+. .++++..++.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-------------~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-------------AKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-------------SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-------------CCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEeeccch
Confidence 5899999999999999984 46799999999999999999986554 4677777766554
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.2e-05 Score=57.38 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=71.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+++|+|+|.|-=+..++=.. +..+++-+|....-+...+.-....+.
T Consensus 70 ~~~DIGSGaGfPGipLAI~~-----------p~~~vtLles~~Kk~~FL~~~~~eL~L---------------------- 116 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAF-----------PDLKVTLLESLGKKIAFLREVKKELGL---------------------- 116 (215)
T ss_pred EEEEeCCCCCCchhhHHHhc-----------cCCcEEEEccCchHHHHHHHHHHHhCC----------------------
Confidence 79999999998887776444 467799999999888888887777766
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..-.+........||+|++.. +..+..++.-+...+++||.++.
T Consensus 117 -------------------~nv~i~~~RaE~~~~~~~~~D~vtsRA----va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 117 -------------------ENVEIVHGRAEEFGQEKKQYDVVTSRA----VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -------------------CCeEEehhhHhhcccccccCcEEEeeh----ccchHHHHHHHHHhcccCCcchh
Confidence 567777776666543222288887743 56666777777888888877643
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0001 Score=63.22 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=56.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (167)
+|||.|||+|.+...++..+...... .....+++|+|+++..+..++.++...... ......++...
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~---~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYF---KEVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCc---ccceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 79999999999999998876311000 001367899999999999999887654310 11111222111
Q ss_pred CCCCCCCCceeeeeecccccc
Q psy889 77 LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~ 97 (167)
.+-..+.||.++..+|.-...
T Consensus 106 ~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred cccccCcccEEEeCCCccccC
Confidence 111235799999998886543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=6e-05 Score=63.20 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=79.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+++|-+|||...++..+.+-. ...++.+|+|+-.++....+... -.++..|...|+..+.|+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G------------~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG------------FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFE 111 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC------------CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCC
Confidence 478999999999988887644 56799999999999988876531 235788888888888888
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+++||.+.....+ ..+-. ++-+.. +.......+.++.|+|++||+++.+.+.
T Consensus 112 dESFdiVIdkGtl-----------------Dal~~--de~a~~-------~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 112 DESFDIVIDKGTL-----------------DALFE--DEDALL-------NTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CcceeEEEecCcc-----------------ccccC--Cchhhh-------hhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 8888844433222 11100 000111 1123445678999999999999988874
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=58.21 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=65.2
Q ss_pred eEEeeecCCCchHHHHHHh-hccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH-hcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPGDIAFRFLNY-VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-DLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
||+-+|||.==+|..++.. .. .+..+.++|+++++++.+++-.. ..+.
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~----------~~~~v~~iD~d~~A~~~a~~lv~~~~~L-------------------- 172 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHG----------PGARVHNIDIDPEANELARRLVASDLGL-------------------- 172 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HT----------T--EEEEEESSHHHHHHHHHHHH---HH--------------------
T ss_pred eEEEEcCCCcchHHHHHHHHhC----------CCCeEEEEeCCHHHHHHHHHHHhhcccc--------------------
Confidence 7999999988777766653 22 36789999999999999998776 3332
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.++.|...|.......-..||+|+...... .-....++|.++.++++||..+++.
T Consensus 173 --------------------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 173 --------------------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---------------------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred --------------------cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 2567888888766655456799887755332 2236889999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.1e-05 Score=58.90 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=58.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+|.|.+|..+++. ..+++++++++.+++..+++.. +.++.+.+.+|+...+|+.
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~-------~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 33 NVLEIGPGLGALTEPLLER-------------AARVTAIEIDRRLAEVLKERFA-------PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred eEEEECCCCCHHHHHHHhh-------------cCeEEEEEeCHHHHHHHHHhcc-------cccceEEEeCchhcCcchh
Confidence 6999999999999999994 5679999999999999998765 2457889999998888775
Q ss_pred C-CCceeeeeecc
Q psy889 82 D-SYSAYTIAFGI 93 (167)
Q Consensus 82 ~-~fd~~~~~~~~ 93 (167)
- .+..++...|.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 4 45555555554
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=56.92 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=44.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|+|-|.|+|+++-++++.+. +.+|++-.|+.....+.|.+.++..++
T Consensus 108 vV~EsGTGSGSlShaiaraV~----------ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 108 VVLESGTGSGSLSHAIARAVA----------PTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred EEEecCCCcchHHHHHHHhhC----------cCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 799999999999999999987 689999999999999999999988776
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6e-05 Score=53.30 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=33.9
Q ss_pred CeEEeeecCCCc-hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
++|||+|||.|. ++..+.+ .+.+++++|+++..++.++++
T Consensus 18 ~kileIG~GfG~~vA~~L~~-------------~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKE-------------SGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred CEEEEEEecCCHHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHh
Confidence 479999999995 7777765 378999999999999988765
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.2e-05 Score=58.72 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.9
Q ss_pred CccchhhHhhhhcccccccH---HHHHHHHHHhcCCCcE
Q psy889 116 ESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGR 151 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~~~~~~---~~~l~~~~~~LkpgG~ 151 (167)
..+.||+|.++.++..+++. ..++.++++.|+|+|.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 35789999999999999875 4778999999999999
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.9e-05 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=28.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+||++|+.+..++++.. +..+++|+|+.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~----------~~~~v~avDl~~~ 59 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGG----------PAGRVVAVDLGPM 59 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTT----------TEEEEEEEESSST
T ss_pred cEEEEcCCcccceeeeeeeccc----------ccceEEEEecccc
Confidence 3799999999999999998662 3588999999875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.4e-05 Score=58.25 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=40.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+.|||+|.|||.+|..++++ +..++++++++.|+...+++.+...
T Consensus 60 D~VLEvGPGTGnLT~~lLe~-------------~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEA-------------GKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHh-------------cCeEEEEecCcHHHHHHHHHhcCCC
Confidence 46999999999999999984 6789999999999999999987554
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=54.13 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=40.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
++||+.+|+|.+++..+... ...++.+|.+...+...+++.+..+.
T Consensus 46 ~~LDlFAGSGaLGlEAlSRG------------A~~~~~vE~~~~a~~~l~~N~~~l~~ 91 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRG------------AARVVFVEKDRKAVKILKENLKALGL 91 (187)
T ss_pred EEEEecCCccHhHHHHHhCC------------CceEEEEecCHHHHHHHHHHHHHhCC
Confidence 79999999999999988843 45799999999999999999987763
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.6e-05 Score=56.95 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=60.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|......+-... -.+++|+|+.+...+.|+...+.... ++.
T Consensus 45 vF~DlGSG~G~~v~~aal~~~-----------~~~~~GIEi~~~~~~~a~~~~~~~~~------~~~------------- 94 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTG-----------CKKSVGIEILPELHDLAEELLEELKK------RMK------------- 94 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH-------------SEEEEEE-SHHHHHHHHHHHHHHHH------HHH-------------
T ss_pred EEEECCCCCCHHHHHHHHHcC-----------CcEEEEEEechHHHHHHHHHHHHHHH------HHH-------------
Confidence 579999999999888776552 34599999999998888765543211 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.......++.+..+|+.+.... -...|+|++++..- -+++...+.+...-||+|.+++.
T Consensus 95 -------------~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 95 -------------HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -------------HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred -------------HhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 0000013456666665432211 12357777766432 34566677888889999988875
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=50.35 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
.|+|+|||.|..+..++... +..+++++|.++.+.+.++++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-----------~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-----------AEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-----------CCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 48999999999999998876 35689999999999999999886543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=56.44 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=63.5
Q ss_pred eEEeeecCCC--chHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPG--DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
-+||+|||-= ...-.+++... +.++++-+|.++-.+..++..+.....
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~----------P~aRVVYVD~DPvv~ah~ralL~~~~~-------------------- 120 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVA----------PDARVVYVDNDPVVLAHARALLADNPR-------------------- 120 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-----------TT-EEEEEESSHHHHHCCHHHHTT-TT--------------------
T ss_pred eEEEcccCCCCCCCHhHHHHhhC----------CCceEEEECCCchHHHHHHhhhcCCCC--------------------
Confidence 3799999954 34555666664 689999999999999999987754321
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCC-----------CCccchhhHhhhhccccccc---HHHHHHHHHHh
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-----------IESDSYSAYTIAFGIRNVTR---IDKALSEAYRV 145 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~ 145 (167)
+...++.+|+.+.. +.-...=.++...++|++++ ...++..++..
T Consensus 121 ---------------------g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~ 179 (267)
T PF04672_consen 121 ---------------------GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA 179 (267)
T ss_dssp ---------------------SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC
T ss_pred ---------------------ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh
Confidence 23556666654321 10011112334556677654 78999999999
Q ss_pred cCCCcEEEEEeecccC
Q psy889 146 LKPGGRFLCLEFSHVN 161 (167)
Q Consensus 146 LkpgG~l~~~~~~~~~ 161 (167)
|.||++|.++..+...
T Consensus 180 lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 180 LAPGSYLAISHATDDG 195 (267)
T ss_dssp S-TT-EEEEEEEB-TT
T ss_pred CCCCceEEEEecCCCC
Confidence 9999999998876543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=53.50 Aligned_cols=102 Identities=17% Similarity=0.043 Sum_probs=70.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|+|+|-.+.+.+... ...++..|+.+......+-+....+.
T Consensus 81 krVLd~gagsgLvaIAaa~aG------------A~~v~a~d~~P~~~~ai~lNa~angv--------------------- 127 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAG------------AAEVVAADIDPWLEQAIRLNAAANGV--------------------- 127 (218)
T ss_pred ceeeecccccChHHHHHHHhh------------hHHHHhcCCChHHHHHhhcchhhccc---------------------
Confidence 489999999999999888765 46788999998877777766554332
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCC-CcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~ 159 (167)
.+.+...|. .. .+..+|+++...++..-+...+++. +++.|+. |-.+++.+...
T Consensus 128 ---------------------~i~~~~~d~--~g-~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 128 ---------------------SILFTHADL--IG-SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ---------------------eeEEeeccc--cC-CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 344444443 22 5677999999988877777788888 5555554 44444444443
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 183 ~ 183 (218)
T COG3897 183 A 183 (218)
T ss_pred C
Confidence 3
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.3e-05 Score=54.07 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=38.0
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|+..|..+..+++.+... ...+++++|..+. .+..++..++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~--------~~~~~~~vD~~~~-~~~~~~~~~~~~~------------------------ 47 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN--------GRGKLYSVDPFPG-DEQAQEIIKKAGL------------------------ 47 (106)
T ss_dssp ----------------------------------EEEESS-------------GGG------------------------
T ss_pred Ccccccccccccccccccccc--------ccCCEEEEECCCc-ccccchhhhhcCC------------------------
Confidence 689999999999999877410 0147999999886 2222322222221
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...+..+. + +...++|+++.-. -|..+.....+..+.+.|+|||.+++-+
T Consensus 48 ----------------~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 48 ----------------SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----------------BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----------------CCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 13466666655332 1 1135677775522 1334556777889999999999998854
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00028 Score=50.18 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=41.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+|+|+|||.|+++..++..+.... .+.+++++|.++..++.+.++.+...
T Consensus 28 ~vvD~GsG~GyLs~~La~~l~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 28 TVVDLGSGKGYLSRALAHLLCNSS-------PNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred EEEEeCCChhHHHHHHHHHHHhcC-------CCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 699999999999999998553211 37889999999999999999887654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00088 Score=52.22 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=79.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccC-CCCCCcccccccccccCC--
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV-PVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~~l~-- 78 (167)
+|+|+|+|+|.++..+++.+....++-. ...+++-+|.|+.+.+..++++...... ......++| ..+..++|
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~~---~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p~~ 96 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEVY---KRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVPFP 96 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHHH---TTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-CC
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhhh---hcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhcccCC
Confidence 7999999999999999999863211000 2468999999999999988887643100 011235667 33554443
Q ss_pred ---CCCCCCceeeeeeccccccC--------C---CCceEEeecccCCCCCCccchhhHhh-----------hhcccccc
Q psy889 79 ---IESDSYSAYTIAFGIRNIDI--------P---NPRLRFLEANAEELPIESDSYSAYTI-----------AFGIRNVT 133 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~--------~---~~~~~~~~~d~~~~~~~~~~~D~v~~-----------~~~~~~~~ 133 (167)
+.++-||...+.--.+.... . +.++.+... +........++. ......-.
T Consensus 97 ~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~~~~~~g~~~Ei~~ 171 (252)
T PF02636_consen 97 GFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLS-----PLSTPSLEEYLPQLGPRLPKLPEGYRIEIPT 171 (252)
T ss_dssp EEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEE-----SSSSTCHCCCTTCCGGG-----TT-EEEE-H
T ss_pred EEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeC-----CCCCHHHHHHHHHhhHhhccCCCCCEEEECH
Confidence 55555554433332221100 0 111222111 111101111111 11111223
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.....++++.+.++.||.++++|++.+.
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~~ 199 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYPA 199 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCCC
Confidence 5678889999999888999999999843
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=55.72 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=78.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||=.|||.|.++..++.. +..+.|=+.|--|+-...-.+..... ..+..=.||-.
T Consensus 153 ~iLvPGaGlGRLa~dla~~-------------G~~~qGNEfSy~Mli~S~FiLN~~~~-----------~nq~~IYPfIh 208 (369)
T KOG2798|consen 153 RILVPGAGLGRLAYDLACL-------------GFKCQGNEFSYFMLICSSFILNYCKQ-----------ENQFTIYPFIH 208 (369)
T ss_pred eEEecCCCchhHHHHHHHh-------------cccccccHHHHHHHHHHHHHHHhhcc-----------CCcEEEEeeee
Confidence 7899999999999999873 56677778877776555444422111 11111123333
Q ss_pred CCCceeeeeeccccccCCC----------CceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHHHHHHHhcCC
Q psy889 82 DSYSAYTIAFGIRNIDIPN----------PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp 148 (167)
..-.....+..+|.+..|. +.+....+|.-.+. -..+.||+|+..+.+..-.++-..++.|+.+|||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP 288 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence 3333333344444433111 22333445544332 3346799998877666667788899999999999
Q ss_pred CcEEE
Q psy889 149 GGRFL 153 (167)
Q Consensus 149 gG~l~ 153 (167)
||+++
T Consensus 289 GGvWi 293 (369)
T KOG2798|consen 289 GGVWI 293 (369)
T ss_pred CcEEE
Confidence 99986
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=49.69 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=64.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||-+|+.+|....++++-.. +.+.+++++.|+......-.-.+..
T Consensus 75 skVLYLGAasGTTVSHvSDIvg----------~~G~VYaVEfs~r~~rdL~~la~~R----------------------- 121 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVG----------PDGVVYAVEFSPRSMRDLLNLAKKR----------------------- 121 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHS-----------------------
T ss_pred CEEEEecccCCCccchhhhccC----------CCCcEEEEEecchhHHHHHHHhccC-----------------------
Confidence 3799999999999999999886 4788999999996655554333322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.|+.-+..|..... ..-...|+|++-.. .-.+.+-+..++...||+||.+++.
T Consensus 122 --------------------~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 122 --------------------PNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp --------------------TTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 34555555554321 11235666655221 1233455567888899999999874
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=56.04 Aligned_cols=31 Identities=42% Similarity=0.780 Sum_probs=29.4
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+.+|+++|||++++||.+++++++|++++
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d 134 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVTD 134 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence 5889999999999999999999999999986
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00033 Score=54.82 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||+--. .++.+.. ...+++..|.++..++..++.++..+... =.+..++++ ..+.
T Consensus 59 ~llDiGsGPtiy--~~lsa~~----------~f~~I~l~dy~~~N~~el~kWl~~~~a~D-Ws~~~~~v~-~lEg----- 119 (256)
T PF01234_consen 59 TLLDIGSGPTIY--QLLSACE----------WFEEIVLSDYSEQNREELEKWLRKEGAFD-WSPFWKYVC-ELEG----- 119 (256)
T ss_dssp EEEEES-TT--G--GGTTGGG----------TEEEEEEEESSHHHHHHHHHHHTT-TS---THHHHHHHH-HHTT-----
T ss_pred EEEEeCCCcHHH--hhhhHHH----------hhcceEEeeccHhhHHHHHHHHCCCCCCC-ccHHHHHHH-hccC-----
Confidence 689999998432 2222222 25679999999999999998876432100 000111111 1111
Q ss_pred CCCceeeeeeccccccCCCCce-EEeecccCCC-CCC-----ccchhhHhhhhcccc----cccHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRL-RFLEANAEEL-PIE-----SDSYSAYTIAFGIRN----VTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~-~~~~~d~~~~-~~~-----~~~~D~v~~~~~~~~----~~~~~~~l~~~~~~LkpgG 150 (167)
..-..-..+..+| ..+ .++..|..+. |.. +..||+|++.+.+.. .....++++++.+.|||||
T Consensus 120 ~~~~~~e~e~~lR------~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG 193 (256)
T PF01234_consen 120 KREKWEEKEEKLR------RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG 193 (256)
T ss_dssp SSSGHHHHHHHHH------HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred CcchhhhHHHHHH------HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 0000000000111 122 2444454432 222 234999988776653 3446788999999999999
Q ss_pred EEEEEeecc
Q psy889 151 RFLCLEFSH 159 (167)
Q Consensus 151 ~l~~~~~~~ 159 (167)
.|++.....
T Consensus 194 ~Lil~~~l~ 202 (256)
T PF01234_consen 194 HLILAGVLG 202 (256)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEcC
Confidence 999976543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00065 Score=55.81 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCC-C----------------------------CCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPP-N----------------------------TLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~-~----------------------------~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
.++|.-||+|.+.+..+.....-.| . ....+.. .++|+|+++.+++.|+.
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~-~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP-IIYGSDIDPRHIEGAKA 272 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc-eEEEecCCHHHHHHHHH
Confidence 4789999999999887664421110 0 0000011 47899999999999999
Q ss_pred HHHhcccCCCCCCcccccccccccCCCCCCCCceeeee
Q psy889 53 RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~ 90 (167)
+++..+. .+.++|..+|+..++-+.+.++.+++.
T Consensus 273 NA~~AGv----~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 273 NARAAGV----GDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHhcCC----CceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 9999987 334444444444443222444444433
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00072 Score=50.52 Aligned_cols=96 Identities=6% Similarity=-0.044 Sum_probs=67.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+.|+|+|+|-++...+.+ ..++++++.++.....|++++.-.+.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-------------A~rViAiE~dPk~a~~a~eN~~v~g~---------------------- 79 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-------------AERVIAIEKDPKRARLAEENLHVPGD---------------------- 79 (252)
T ss_pred ceeeccCCcchHHHHHHhh-------------hceEEEEecCcHHHHHhhhcCCCCCC----------------------
Confidence 4689999999999887764 35799999999999999988644343
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc--ccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.++..|.....+ ...|+|+|...-. -....-.++..+.+.||-++.++
T Consensus 80 -------------------~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 80 -------------------VNWEVVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -------------------cceEEEecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 567788888777655 3468888854211 11122345556666778777765
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=53.55 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=91.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc---CC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---LP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---l~ 78 (167)
.++|+|+|.|.++..+++.+..+.++-- ...++.-+++|+.....-+++++.... +.-+++|...-..+ +-
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~---~~~~~~iiE~s~~L~~~Qk~~L~~~~~---~~~~~~~~e~~p~~~~~i~ 153 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPELY---EALSYYIIEPSPELRARQKETLKATED---LIRWVEWVEDLPKKFPGIV 153 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHHH---hcceEEEEecCHHHHHHHHHHHhcccc---chhHHHHHHhccccCceEE
Confidence 5899999999999999998743221111 267899999999999999988876531 23345555444444 33
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCC-CCCC---ccchhhHhhhh---------cccccccHHHHHHHHHHh
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIE---SDSYSAYTIAF---------GIRNVTRIDKALSEAYRV 145 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~---~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~ 145 (167)
|.++-||...++--+++-.---.++.. .+.+. ..+. .+.+|-.+... .+...+....+++.+.+.
T Consensus 154 ~~NElfDAlPv~q~~~~~~~~~Er~~~--~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~ 231 (370)
T COG1565 154 VSNELFDALPVEQFIRTKGLFVERVVV--LDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAER 231 (370)
T ss_pred EechhhccccceeEeccCceEEEEeec--cCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHH
Confidence 889999988877666542210001110 01100 0010 11222222211 111223345788999999
Q ss_pred cCCCcEEEEEeecccCCc
Q psy889 146 LKPGGRFLCLEFSHVNNS 163 (167)
Q Consensus 146 LkpgG~l~~~~~~~~~~~ 163 (167)
|+. |.++++|++++..+
T Consensus 232 L~~-G~~l~iDYG~~~~~ 248 (370)
T COG1565 232 LER-GVFLFIDYGYPAEE 248 (370)
T ss_pred Hhh-CeEEEEecCCcccc
Confidence 988 88888899986543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00062 Score=48.48 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=47.8
Q ss_pred cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCC
Q psy889 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI 115 (167)
Q Consensus 36 ~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 115 (167)
+++++|+.+++++.++++++..+.. .+++++.++=+++. . ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~l~---------------------------------~-~i 42 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHENLD---------------------------------E-YI 42 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGGGG---------------------------------G-T-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHHHH---------------------------------h-hC
Confidence 4899999999999999999877651 13333333322221 0 01
Q ss_pred CccchhhHhhhhccc---------ccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 116 ESDSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
+.+.+|+++.+.+.- .-...-.+++.+.+.|+|||.+.++.+
T Consensus 43 ~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 43 PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp -S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 112344443332211 112346788999999999999998654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00092 Score=50.45 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=40.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+.|||||-|++...++..+ +..-+.|.++.....+..+++++....
T Consensus 64 faDIGCGyGGLlv~Lsp~f-----------PdtLiLGmEIR~KVsdYVk~RI~ALR~ 109 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKF-----------PDTLILGMEIRDKVSDYVKERIQALRR 109 (249)
T ss_pred EEeeccCccchhhhccccC-----------ccceeeeehhhHHHHHHHHHHHHHHhc
Confidence 6899999999999999988 477799999999999999999976553
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00092 Score=54.32 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=27.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
+++||+||++|+.+..+++ .+.+++++|..+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~-------------rG~~V~AVD~g~ 243 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVR-------------RGMFVTAVDNGP 243 (357)
T ss_pred CEEEEeCCCCcHHHHHHHH-------------cCCEEEEEechh
Confidence 5899999999999999988 477999999543
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00039 Score=58.77 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=47.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
.+||++||||.++..+++. ..+++|+++++++++.|+.++...+. .|.+|+++-++.+
T Consensus 386 ~llDv~CGTG~iglala~~-------------~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 386 TLLDVCCGTGTIGLALARG-------------VKRVIGVEISPDAVEDAEKNAQINGI-----SNATFIVGQAEDL 443 (534)
T ss_pred EEEEEeecCCceehhhhcc-------------ccceeeeecChhhcchhhhcchhcCc-----cceeeeecchhhc
Confidence 5799999999999999984 56799999999999999998876554 4667777755553
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00023 Score=54.23 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l---- 77 (167)
+|+|..||.|+.+..++. .+..++++|+++.-+..|+.+++..++ |. +++|++||...+
T Consensus 97 ~iidaf~g~gGntiqfa~-------------~~~~VisIdiDPikIa~AkhNaeiYGI---~~-rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFAL-------------QGPYVIAIDIDPVKIACARHNAEVYGV---PD-RITFICGDFLDLASKL 159 (263)
T ss_pred hhhhhhhcCCchHHHHHH-------------hCCeEEEEeccHHHHHHHhccceeecC---Cc-eeEEEechHHHHHHHH
Confidence 578999999999888876 367899999999999999999998887 34 899999997765
Q ss_pred CCCCCCCceeeeeecc
Q psy889 78 PIESDSYSAYTIAFGI 93 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~ 93 (167)
.|+-.+.|.+-++++-
T Consensus 160 q~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 160 KADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhheeeeeecCCCC
Confidence 3555555555555444
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=48.60 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=39.4
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
|.|+||--|.++..+++.. ...+++++|+++.-++.|++++...+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-----------~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-----------KAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-----------SEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999865 256799999999999999999987765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0007 Score=52.78 Aligned_cols=31 Identities=55% Similarity=1.023 Sum_probs=29.4
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+++|++.|||++++||.+++.+++|+.+.
T Consensus 162 ~w~~~dAE~LpFdd~s~D~yTiafGIRN~th 192 (296)
T KOG1540|consen 162 EWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH 192 (296)
T ss_pred EEEeCCcccCCCCCCcceeEEEecceecCCC
Confidence 5899999999999999999999999999985
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0045 Score=46.52 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...++...+++.|||||.+++.|+...-
T Consensus 144 ~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 144 TAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred hHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 3577888999999999999998876443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=50.52 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=48.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
..|+|+|+|.|.+|..+++. +.+++++|+++.+++..++++. ..++++++.+|+.++...
T Consensus 32 ~~VlEiGpG~G~lT~~L~~~-------------~~~v~~vE~d~~~~~~L~~~~~-------~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 32 DTVLEIGPGPGALTRELLKR-------------GKRVIAVEIDPDLAKHLKERFA-------SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp SEEEEESSTTSCCHHHHHHH-------------SSEEEEEESSHHHHHHHHHHCT-------TCSSEEEEES-TTTSCGG
T ss_pred CEEEEeCCCCccchhhHhcc-------------cCcceeecCcHhHHHHHHHHhh-------hcccceeeecchhccccH
Confidence 36999999999999999885 4679999999999999998765 234677888887776543
Q ss_pred C
Q psy889 81 S 81 (167)
Q Consensus 81 ~ 81 (167)
.
T Consensus 92 ~ 92 (262)
T PF00398_consen 92 D 92 (262)
T ss_dssp G
T ss_pred H
Confidence 3
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0041 Score=51.45 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 133 TRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 133 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.|...+|+-=.+-|+|||+++++-.+.++
T Consensus 214 ~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 214 ADLAGFLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEecCCC
Confidence 34555565556789999999998888764
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00069 Score=48.99 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=42.6
Q ss_pred eEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 103 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+++++-.....++.+.+.|+|++.+++.|+. ....++++++++|||||+|.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 4444433445678899999999999998765 46788899999999999998854
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0036 Score=51.30 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=65.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|--.+.+.++- ...+++-+|.+++|++.++.+.--... ..
T Consensus 292 ~vLvlGGGDGLAlRellkyP-----------~~~qI~lVdLDP~miela~~~~vlr~~--------------------N~ 340 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYP-----------QVEQITLVDLDPRMIELASHATVLRAL--------------------NQ 340 (508)
T ss_pred eEEEEcCCchHHHHHHHhCC-----------CcceEEEEecCHHHHHHhhhhhHhhhh--------------------cc
Confidence 68899999998888887643 267899999999999999944321111 11
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHH-----HHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDK-----ALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~ 155 (167)
++|+ ++++.+...|..++ .-....||.|+.-.---..+.+.+ .-.-+.+.|+++|.+++-
T Consensus 341 ~sf~--------------dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 341 GSFS--------------DPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred CCcc--------------CCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 2222 24555555555442 222345777665321111122222 234577889999998873
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0022 Score=52.21 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|.|.|....+...-+. ..-.++-++.|+..-+......++...
T Consensus 116 siLDvG~GPgtgl~A~n~i~P----------dl~sa~ile~sp~lrkV~~tl~~nv~t---------------------- 163 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWP----------DLKSAVILEASPALRKVGDTLAENVST---------------------- 163 (484)
T ss_pred hhhccCCCCchhhhhhcccCC----------CchhhhhhccCHHHHHHHHHHHhhccc----------------------
Confidence 589999999998887766553 223355566676654444433332211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+- .+..+..+ ..|..+++. .+.|++++...-+... ..+...+..++..+.|||.|+++|-+
T Consensus 164 --------~~----td~r~s~v---t~dRl~lp~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 164 --------EK----TDWRASDV---TEDRLSLPA-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred --------cc----CCCCCCcc---chhccCCCc-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 00001111 222223332 3557777765544322 23556889999999999999999866
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.|
T Consensus 228 tp 229 (484)
T COG5459 228 TP 229 (484)
T ss_pred Cc
Confidence 54
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00025 Score=48.27 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=29.7
Q ss_pred chhhHhhhhccccc------ccHHHHHHHHHHhcCCCcEEEE
Q psy889 119 SYSAYTIAFGIRNV------TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 119 ~~D~v~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.||+|+|..+..|+ ..++++|+++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 38999998877665 3578999999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0015 Score=55.30 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred CCCCCccchhhHhhhhcccccc---cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 112 ELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 112 ~~~~~~~~~D~v~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++..+-+||++-+...+.... ++..++-++-|+|+|||.+++-|.
T Consensus 420 ~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 420 AFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 3455668899998887776554 478889999999999999999663
|
; GO: 0008168 methyltransferase activity |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.024 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
++|+|+|+..|+-+..+++.+. ....++++|+.+
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~----------~~~~ivavDi~p 80 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLG----------AGGKIVAVDILP 80 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhC----------CCCcEEEEECcc
Confidence 5899999999999999999885 356699999866
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0081 Score=48.06 Aligned_cols=82 Identities=9% Similarity=-0.026 Sum_probs=46.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (167)
++||||+|..-+--.+.... .+.+++|+|+++.+++.|+++++.. +.-+.+++.....-..
T Consensus 105 ~glDIGTGAscIYpLLg~~~-----------~~W~fvaTdID~~sl~~A~~nv~~N---~~L~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKL-----------YGWSFVATDIDPKSLESARENVERN---PNLESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHH-----------H--EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTT
T ss_pred EeecCCccHHHHHHHHhhhh-----------cCCeEEEecCCHHHHHHHHHHHHhc---cccccceEEEEcCCccccchh
Confidence 68999999987643443333 2789999999999999999999754 1235566665443222
Q ss_pred CCCCCCCCceeeeeecccccc
Q psy889 77 LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~ 97 (167)
+.-..+.||+..+.+|...-.
T Consensus 171 i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STT--S-EEEEEE-----SS-
T ss_pred hhcccceeeEEecCCccccCh
Confidence 224457899999999986543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.029 Score=45.90 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=36.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++|||+|+..|+-+..+++.+...+ ..+.+++=|.+..-+.......
T Consensus 157 ~~VLDmCAAPG~Kt~qLLeal~~~~-------~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 157 DKVLDMCAAPGGKTAQLLEALHKDP-------TRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred CeeeeeccCCCccHHHHHHHHhcCC-------CCCeeEecccCHHHHHHHHHHH
Confidence 4799999999999999999875321 1347899999888777776655
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.005 Score=50.14 Aligned_cols=162 Identities=11% Similarity=0.001 Sum_probs=71.8
Q ss_pred CeEEeeecCCCchHHHHHHhhcc-----CCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc--cCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDK-----LPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~d 73 (167)
++|+|+||.+|..++.+...+-. ......+.++..+++--|....--...-+.+.... ....+.-.+..+.++
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgS 97 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGS 97 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCch
Confidence 47999999999998887765310 00000111235678888874432222211121110 000011234445566
Q ss_pred cccCCCCCCCCceeeeeeccccccC-CCCceEE--eecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCc
Q psy889 74 AEELPIESDSYSAYTIAFGIRNIDI-PNPRLRF--LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 74 ~~~l~~~~~~fd~~~~~~~~~~~~~-~~~~~~~--~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG 150 (167)
+.+=-|+.++.+++..+..++=.-. |..-..- ...+-..+.........|...+.-..-.|+..+|+-=.+-|+|||
T Consensus 98 Fy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG 177 (334)
T PF03492_consen 98 FYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGG 177 (334)
T ss_dssp TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCc
Confidence 6666688888888888877765431 1110000 000000011111111222222221223456666766677899999
Q ss_pred EEEEEeecccCC
Q psy889 151 RFLCLEFSHVNN 162 (167)
Q Consensus 151 ~l~~~~~~~~~~ 162 (167)
+++++-++.++.
T Consensus 178 ~mvl~~~gr~~~ 189 (334)
T PF03492_consen 178 RMVLTFLGRDEE 189 (334)
T ss_dssp EEEEEEEE-STS
T ss_pred EEEEEEeecccc
Confidence 999998888773
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0042 Score=47.93 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=61.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|+.||+++--+++.. ..+++++|.....++.--+.-
T Consensus 82 v~LDiGsSTGGFTd~lLq~g------------Ak~VyavDVG~~Ql~~kLR~d--------------------------- 122 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQRG------------AKHVYAVDVGYGQLHWKLRND--------------------------- 122 (245)
T ss_pred EEEEecCCCccHHHHHHHcC------------CcEEEEEEccCCccCHhHhcC---------------------------
Confidence 68999999999999999854 568999999876665543221
Q ss_pred CCCceeeeeeccccccCCCCceE-EeecccCCCCC--CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLR-FLEANAEELPI--ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++. +...+...+.. -....|+++|-.+ +-....+|..+..++++++.++..
T Consensus 123 -------------------~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS---FISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 123 -------------------PRVIVLERTNVRYLTPEDFTEKPDLIVIDVS---FISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred -------------------CcEEEEecCChhhCCHHHcccCCCeEEEEee---hhhHHHHHHHHHHhcCCCceEEEE
Confidence 2332 23334433221 0124567766432 335677888899999999888763
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=44.64 Aligned_cols=100 Identities=13% Similarity=0.061 Sum_probs=67.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||++|=|-|-..-.+-++ +..+-+-++..+..+...+...-..
T Consensus 104 rvLnVGFGMgIidT~iQe~------------~p~~H~IiE~hp~V~krmr~~gw~e------------------------ 147 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEA------------PPDEHWIIEAHPDVLKRMRDWGWRE------------------------ 147 (271)
T ss_pred eEEEeccchHHHHHHHhhc------------CCcceEEEecCHHHHHHHHhccccc------------------------
Confidence 7999998887665554332 2556777888888877776543211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.++....+.-+++ .+.++.||-|+---.-....++....+.+.+.|||+|.+-+.
T Consensus 148 ------------------k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 148 ------------------KENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ------------------ccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 24677777655553 255677887754322244567888888999999999998663
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=46.30 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=37.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
.|||..+|+|..+.+..+ .+-+++|+|++++.++.|++|+..
T Consensus 211 ~VLDPF~GSGTT~~AA~~-------------lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKA-------------SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred EEEECCCCCcHHHHHHHH-------------cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 699999999999888766 378899999999999999999864
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.064 Score=40.66 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=35.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+||=+|+.+|....++++-.+ .+.+++++.|+......-.-.+
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~-----------~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVG-----------EGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred EEEEeeccCCCcHhHHHhccC-----------CCcEEEEEecchhHHHHHHHHH
Confidence 689999999999999998774 5789999999988766655544
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=45.24 Aligned_cols=47 Identities=11% Similarity=-0.040 Sum_probs=36.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|+|+|||-==++..++... ++..|+|.|++..+++....-....+.
T Consensus 108 sVlDigCGlNPlalp~~~~~-----------~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEA-----------PGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSS-----------TT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred hhhhhhccCCceehhhcccC-----------CCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 79999999977777666543 367999999999999999988776654
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0046 Score=45.18 Aligned_cols=106 Identities=14% Similarity=-0.022 Sum_probs=67.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+|--.++-.+..... +...+..+|-++.+++..++.....+..+
T Consensus 32 ~ilelgggft~laglmia~~a----------~~~~v~ltdgne~svrnv~ki~~~n~~s~-------------------- 81 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKA----------PDSSVWLTDGNEESVRNVEKIRNSNMASS-------------------- 81 (201)
T ss_pred HHHHhcCchhhhhhhheeeec----------CCceEEEecCCHHHHHHHHHHHhcccccc--------------------
Confidence 688998886555544433222 47789999999999998887664322100
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+...+..+.. +.......||.|+|+..+........+.+.|+++|+|.|.-++.
T Consensus 82 ------------------~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 82 ------------------LTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred ------------------cceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 012222222111 11233457999999876555555677889999999999986663
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.029 Score=44.36 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=54.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
|+|+|+.||.|.++..+.+.. ...+.++|+++.+++..+.+.... ...+|++++..
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G------------~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~ 57 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG------------FEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEK 57 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC------------CEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchh
Confidence 689999999999988887632 234678999999999888775421 45677777652
Q ss_pred C-CCCCceeeeeecccccc
Q psy889 80 E-SDSYSAYTIAFGIRNID 97 (167)
Q Consensus 80 ~-~~~fd~~~~~~~~~~~~ 97 (167)
+ ...+|.+..+++=..+-
T Consensus 58 ~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 58 DFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred hcCCCCCEEEeCCCChhhh
Confidence 2 45688888887765554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.023 Score=46.31 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=58.7
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
.-+| |.|+++..+++++ +++++++|.+++-.+.|++.-...-
T Consensus 173 ~G~G-GlGh~avQ~Aka~------------ga~Via~~~~~~K~e~a~~lGAd~~------------------------- 214 (339)
T COG1064 173 VGAG-GLGHMAVQYAKAM------------GAEVIAITRSEEKLELAKKLGADHV------------------------- 214 (339)
T ss_pred ECCc-HHHHHHHHHHHHc------------CCeEEEEeCChHHHHHHHHhCCcEE-------------------------
Confidence 3445 6778888888877 7999999999999999986532211
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+...+......-.+.+|+++.. + . ...+....+.|++||.++++-.-
T Consensus 215 ---------------------i~~~~~~~~~~~~~~~d~ii~t-----v-~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 215 ---------------------INSSDSDALEAVKEIADAIIDT-----V-G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------------------EEcCCchhhHHhHhhCcEEEEC-----C-C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111111111111237777653 2 2 66778889999999999987655
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.036 Score=42.66 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=37.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.|||..||+|..+.+..+ .+-+++|+|+++..++.+.+|+...
T Consensus 166 ~vlDpf~Gsgtt~~aa~~-------------~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQ-------------SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred EEEeCCCCCCHHHHHHHH-------------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 699999999999888766 3678999999999999999998654
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.072 Score=41.33 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCC-
Q psy889 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE- 112 (167)
Q Consensus 34 ~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~- 112 (167)
..+++++|+++.+++..++..+..+. ++.....|+..
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl------------------------------------------~i~~~~~DlR~~ 104 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGL------------------------------------------PIEAVHYDLRDP 104 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT--------------------------------------------EEEE---TTS-
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCC------------------------------------------ceEEEEeccccc
Confidence 67899999999999999998887775 36666666654
Q ss_pred CC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccCCcc
Q psy889 113 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 164 (167)
Q Consensus 113 ~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 164 (167)
+| .-.+.||++++-=. .-...+.-.+++..+.||..|-..+..+++.+.++
T Consensus 105 LP~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 105 LPEELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp --TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred CCHHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 33 23577888866211 11245677788999999887755555777766443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.18 Score=37.88 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=26.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
.+|||+||..|.-+....+... +.+.+.|+|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~----------p~g~v~gVDl 102 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVN----------PNGMVLGVDL 102 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhC----------CCceEEEEee
Confidence 4799999999999988888774 4677888886
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.033 Score=46.09 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||.-+|+|-=+++.+..+. ...+++.-|+|+++++..+++++..+...
T Consensus 52 ~~lDalaasGvR~iRy~~E~~----------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-------------------- 101 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELA----------GVDKVTANDISPEAVELIKRNLELNGLED-------------------- 101 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-S----------SECEEEEEES-HHHHHHHHHHHHHCT-SG--------------------
T ss_pred eEEeccccccHHHHHHHHHcC----------CCCEEEEecCCHHHHHHHHHhHhhccccC--------------------
Confidence 799999999999999988763 25689999999999999999987655410
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|...+. .....||+|=. +-+-..--+++.+.+.++.||+|.++.
T Consensus 102 -------------------~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 102 -------------------ERIEVSNMDANVLLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -------------------CCEEEEES-HHHHHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------ceEEEehhhHHHHhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 12344333332221 12344555521 122334567778888999999998853
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=40.26 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=29.2
Q ss_pred hhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 120 ~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+|+|+.+.++........+...+...|..+|.+++.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 899999988887777788888888889888855543
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.36 Score=38.90 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEEeeecCCCchHHHHHHhhc----cCCCCCCC-----CCCCCcEEEeeCChHHHH--HHHHHHHhcccCCCCCCccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVD----KLPPNTLS-----EHCAPHVTVADINRAMLD--VGEQRARDLFKVPVPNPRLRFL 70 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~----~~~~~~~~-----~~~~~~~~~~D~s~~~~~--~a~~~~~~~~~~~~~~~~~~~~ 70 (167)
+||.||.|.|.-..+++..+. ....+.++ .++...++.+|+..-.-- .....+.... .+...
T Consensus 89 ~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p---~~sk~---- 161 (315)
T PF11312_consen 89 RVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPP---PLSKY---- 161 (315)
T ss_pred eEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCC---Ccccc----
Confidence 799999999999888888872 11111111 234568999999654322 2222221110 00000
Q ss_pred ccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCC-------CccchhhHhhhhcccc-----cccHHHH
Q psy889 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-------ESDSYSAYTIAFGIRN-----VTRIDKA 138 (167)
Q Consensus 71 ~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~D~v~~~~~~~~-----~~~~~~~ 138 (167)
+.....+ ......-++.|.+.|...... .....++|...+++.. .+...++
T Consensus 162 -a~~~~~~----------------~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~F 224 (315)
T PF11312_consen 162 -ASAANWP----------------LIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKF 224 (315)
T ss_pred -ccccccc----------------cCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHH
Confidence 0000000 001111246666766554432 2235789988777653 3446788
Q ss_pred HHHHHHhcCCCcEEEEEee
Q psy889 139 LSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 139 l~~~~~~LkpgG~l~~~~~ 157 (167)
|.++-..++||..|+++|-
T Consensus 225 Ll~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 225 LLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHhhcCCCcEEEEEcC
Confidence 9999999999999999774
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.087 Score=41.14 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=46.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCC-CC---Cccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-PN---PRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~~d~~~ 76 (167)
+|||+.+|.|..++.++. .+++++++|.++......+..+++....+. .. .+++...+|...
T Consensus 91 ~VLD~TAGlG~Da~~las-------------~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS-------------VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred EEEECCCCccHHHHHHHH-------------cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 799999999999999987 577899999999999999988876421110 11 245666666444
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=44.21 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=75.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+=+|+|-|-+..+.+++..+.. +...+++++-++.++...+.+ +...+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-------RkVklyavEKNPNAivtL~~~-n~~~W---------------------- 419 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETD-------RKVKLYAVEKNPNAIVTLQNR-NFECW---------------------- 419 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhc-------CceEEEEEecCcchhhhhhhh-chhhh----------------------
Confidence 467789999999888777654333 467899999999998888763 22232
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh--cccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++..|+..++.+....|++++.. .+..-.--...|..+-+.|||+|+.+=
T Consensus 420 ------------------~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 420 ------------------DNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ------------------cCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 2678999999999875557789887732 111111235678888999999988764
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.038 Score=41.91 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=50.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|+|+|.-.|+-+..++..+.... ...+++++|++....... ..+....
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~-------~~~~VigiDIdir~~~~~--a~e~hp~---------------------- 83 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLG-------GKGKVIGIDIDIRPHNRK--AIESHPM---------------------- 83 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT----------EEEEEES-GTT--S---GGGG-------------------------
T ss_pred eEEEEecCCCchHHHHHHHHHHhC-------CCceEEEEeCCcchhchH--HHhhccc----------------------
Confidence 689999999998888877653221 267899999954332211 1121111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--------CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+++++..+.. .......+| +..+-|......+.|+-....+.+|++++
T Consensus 84 ------------------~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlV-ilDs~H~~~hvl~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 84 ------------------SPRITFIQGDSIDPEIVDQVRELASPPHPVLV-ILDSSHTHEHVLAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp -------------------TTEEEEES-SSSTHHHHTSGSS----SSEEE-EESS----SSHHHHHHHHHHT--TT-EEE
T ss_pred ------------------cCceEEEECCCCCHHHHHHHHHhhccCCceEE-EECCCccHHHHHHHHHHhCccCCCCCEEE
Confidence 145666666544321 011112222 22233444566777888899999999998
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+-|
T Consensus 145 VeD 147 (206)
T PF04989_consen 145 VED 147 (206)
T ss_dssp ETS
T ss_pred EEe
Confidence 844
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.33 Score=41.65 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=56.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~- 79 (167)
+|.|.+||+|++-....+++.... ....++|.|++......++.+.--++... ......+|-..-| +
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~-------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i~~~dtl~~~~~~ 257 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQ-------DEIFIYGQEINDTTYRLAKMNLILHGIEG----DANIRHGDTLSNPKHD 257 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhc-------cceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccccccccccCCccc
Confidence 689999999999888888774200 03669999999999999999987666521 2233333322222 3
Q ss_pred ---CCCCCceeeeeeccc
Q psy889 80 ---ESDSYSAYTIAFGIR 94 (167)
Q Consensus 80 ---~~~~fd~~~~~~~~~ 94 (167)
..+.||++...++..
T Consensus 258 ~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 258 DKDDKGKFDFVIANPPFS 275 (489)
T ss_pred ccCCccceeEEEeCCCCC
Confidence 557788888887775
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.0072 Score=46.72 Aligned_cols=31 Identities=39% Similarity=0.754 Sum_probs=22.3
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+.+|++++||++++||.+++++++|++++
T Consensus 101 ~~v~~da~~lp~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 101 EFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp EEEE-BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred eEEEcCHHHhcCCCCceeEEEHHhhHHhhCC
Confidence 4789999999999999999999999999986
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.17 Score=41.02 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=77.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
++++|+.||.|.+.+-+..+. ...+.++|+++..++.-+.+... -.....|+.++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag------------f~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~ 61 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG------------FEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGE 61 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC------------CeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChh
Confidence 589999999999998887643 34467999999999988877652 123445555543
Q ss_pred -CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh----hhcccccccHHH----HHHHHHHhcCCC
Q psy889 79 -IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI----AFGIRNVTRIDK----ALSEAYRVLKPG 149 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~----~~~~~~~~~~~~----~l~~~~~~Lkpg 149 (167)
+....+|.++-+++=..+-..+.+-.+ .|... .+--..+.+|-. ..++.+++.+.. .++.+.+.|+..
T Consensus 62 ~~~~~~~DvligGpPCQ~FS~aG~r~~~--~D~R~-~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 62 ALRKSDVDVLIGGPPCQDFSIAGKRRGY--DDPRG-SLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred hccccCCCEEEeCCCCcchhhcCcccCC--cCccc-eeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 222277888888777666544433000 00000 000011122211 235566766544 889999999999
Q ss_pred cE
Q psy889 150 GR 151 (167)
Q Consensus 150 G~ 151 (167)
|+
T Consensus 139 GY 140 (328)
T COG0270 139 GY 140 (328)
T ss_pred CC
Confidence 98
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.18 Score=42.58 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.|||+|.|||-+++..+++. .-.+++++.-..|.+.|++.....++
T Consensus 69 ~vLdigtGTGLLSmMAvrag------------aD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG------------ADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred EEEEccCCccHHHHHHHHhc------------CCeEEeehhhchHHHHHHHHHhcCCC
Confidence 58999999999999988876 34599999999999999988876665
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.24 Score=37.92 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=40.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
++.|+||--+.++.++.+.. ...++++.|+++.-++.|.+++.....
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~-----------~~~~~va~eV~~gpl~~a~~~v~~~~l 65 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN-----------PASTAVAGEVVPGPLESAIRNVKKNNL 65 (226)
T ss_pred ceeeccCchhHhHHHHHhcC-----------CcceEEEeecccCHHHHHHHHHHhcCC
Confidence 48999999999999998865 367899999999999999999876654
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.099 Score=40.02 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=31.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
++-|.|||+|++.-.+.-.-.. .-..+++.|+++++++.|++++.
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~---------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRR---------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGG---------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred eeeccCCCccHHHHHHHHhhhH---------HHHhHhcccCCHHHHHHHHHhhh
Confidence 4679999999986655322110 24579999999999999999875
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.1 Score=44.11 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh-cccCCCCCCcccccccccccCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++|+|.|.|.-.-++...... ..-.++.+|.+.+|.......... .++
T Consensus 204 ~~dfgsg~~~~~~a~~~lwr~---------t~~~~~~Vdrs~~~~~~~e~~lr~~~~~---------------------- 252 (491)
T KOG2539|consen 204 LRDFGSGAGNGGWAAVLLWRQ---------TKREYSLVDRSRAMLKQSEKNLRDGSHI---------------------- 252 (491)
T ss_pred HHHHHhhcccchhhhhhhccc---------ccceeEeeccchHHHHHHHHhhcChhhc----------------------
Confidence 567888888776666555431 245689999999999998887765 111
Q ss_pred CCCceeeeeeccccccCCCCceEEee--cccCCCCC-CccchhhHhhhhcccccccH----HHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLE--ANAEELPI-ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~-~~~~~D~v~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~ 154 (167)
+...... ..-.-.|. ....||+|+|++.++..... .-.-+-.++..++|+++++
T Consensus 253 -------------------g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 253 -------------------GEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred -------------------CchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 1111111 00111232 23459999999988866442 1222345666789999999
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
++-+.
T Consensus 314 Ie~g~ 318 (491)
T KOG2539|consen 314 IEKGT 318 (491)
T ss_pred EecCC
Confidence 87543
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.11 Score=41.20 Aligned_cols=36 Identities=17% Similarity=-0.066 Sum_probs=27.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD 48 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 48 (167)
.||||+|||.|--......+. ...+...|.+...++
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~------------~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKG------------AVSVHFQDFNAEVLR 153 (282)
T ss_pred ceeEecCCcccccchhhhhhc------------cceeeeEecchhhee
Confidence 489999999998887776654 356777787776653
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.23 Score=39.82 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=74.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||=+|.|-|.+.+....| + .-..+.-+|++...++..++-++..+.
T Consensus 124 kvlVVgggDggvlrevikH-~----------~ve~i~~~eiD~~Vie~sk~y~p~la~---------------------- 170 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKH-K----------SVENILLCEIDENVIESSKQYLPTLAC---------------------- 170 (337)
T ss_pred eEEEEecCCccceeeeecc-c----------cccceeeehhhHHHHHHHHHHhHHHhc----------------------
Confidence 6888999999999998888 3 366799999999999999988876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccc----ccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.|+ +.++.+.-+|...+ -.+.++||+|+.-..=..- .-.+..+..+.+.||+||+++..
T Consensus 171 -gy~--------------~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 171 -GYE--------------GKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred -ccC--------------CCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 011 24566665554332 1335778888763311111 12466778899999999999875
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 236 ~ 236 (337)
T KOG1562|consen 236 G 236 (337)
T ss_pred c
Confidence 4
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.051 Score=43.50 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=36.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.|+|+-+|.|.+++.++-..+ ...++++|.++.+++..++.++..
T Consensus 197 viVDLYAGIGYFTlpflV~ag-----------Ak~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTAG-----------AKTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred hhhhhhcccceEEeehhhccC-----------ccEEEEEecCHHHHHHHHHHHHhc
Confidence 478999999999995444332 567999999999999999887643
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.45 Score=34.48 Aligned_cols=46 Identities=9% Similarity=-0.111 Sum_probs=37.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+.+|+|+|.|.+-.+.+++. .-..+|+++++-.+..++-+.-+.+.
T Consensus 75 klvDlGSGDGRiVlaaar~g------------~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCG------------LRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred cEEeccCCCceeehhhhhhC------------CCcCCceeccHHHHHHHHHHHHHHhc
Confidence 46899999999999988865 24578999999999999877766554
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.092 Score=35.73 Aligned_cols=28 Identities=7% Similarity=-0.256 Sum_probs=23.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
..+|+|||+|-+...+.+ .+..-.|+|.
T Consensus 61 ~FVDlGCGNGLLV~IL~~-------------EGy~G~GiD~ 88 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNS-------------EGYPGWGIDA 88 (112)
T ss_pred ceEEccCCchHHHHHHHh-------------CCCCcccccc
Confidence 468999999999888877 4777889995
|
; GO: 0008168 methyltransferase activity |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.35 Score=34.10 Aligned_cols=43 Identities=19% Similarity=-0.005 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+|+|+|++.|..++.++-.. ..++++++.++...+..+++...
T Consensus 31 tV~dIGA~iGdSaiYF~l~G------------AK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLRG------------ASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred EEEEecCCccchhhHHhhcC------------ccEEEEeccCHHHHHHHHHHhhh
Confidence 79999999999999987644 45799999999999999887754
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.53 Score=38.77 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=38.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
+|+|.-+|+|-=+++.+.... ..+++.-|+|+.+++..+++....
T Consensus 55 ~v~DalsatGiRgIRya~E~~-----------~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETG-----------VVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred EEeecccccchhHhhhhhhcC-----------ccEEEEccCCHHHHHHHHHHHHhc
Confidence 689999999988888887663 338999999999999999998754
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.87 Score=35.80 Aligned_cols=47 Identities=6% Similarity=-0.074 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
..+|+|+|++.-+..+++.+.... ...+++.+|+|...+....+.+.
T Consensus 81 ~lveLGsGns~Ktr~Llda~~~~~-------~~~ryvpiDv~a~iL~~ta~ai~ 127 (321)
T COG4301 81 TLVELGSGNSTKTRILLDALAHRG-------SLLRYVPIDVSASILRATATAIL 127 (321)
T ss_pred eEEEecCCccHHHHHHHHHhhhcC-------CcceeeeecccHHHHHHHHHHHH
Confidence 468999999999999999874211 24689999999999887666554
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.87 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.7
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~ 53 (167)
+||..|||. |..+..++++. +. +++++|.+++..+.+++.
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~------------g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLL------------GAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHc
Confidence 688888877 77777777765 44 599999999988888764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.86 Score=35.43 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
|++|+|+..|+-+..+.+++-+..++ +.+....++++|+.+
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~--~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPS--SGERDKKIVAVDLQP 84 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCC--cchhhccEEEEeccc
Confidence 78999999999999999887431111 111233599999855
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.29 Score=39.99 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=31.0
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|+=+|||+ |-++..+++... ..+++++|.++.-++.|++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-----------a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-----------ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHHHHHhC
Confidence 467788886 444455555553 578999999999999998754
|
|
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.34 Score=40.16 Aligned_cols=40 Identities=5% Similarity=-0.066 Sum_probs=33.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.|+|+|+|.|+++..+.-++ +..++++|-|....+.|++.
T Consensus 156 ~vvD~GaG~G~LSr~lSl~y------------~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFLSLGY------------GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred eeEEcCCCchHHHHHHhhcc------------CceEEEeccchHHHHHHHHH
Confidence 58999999999999998766 67899999998777766543
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.33 Score=33.15 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|.|..+..++++. +.+++++|.++.-.+.+++
T Consensus 1 ~vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAM------------GAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHT------------TSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHc------------CCEEEEEECCHHHHHHHHh
Confidence 4577888888876 7899999999998888875
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.14 Score=43.51 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=67.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||.-|++|--+++.+.++. -..++++-|.++..++..+++.+....
T Consensus 111 l~vLealsAtGlrslRya~El~----------~v~~v~AnD~~~~aV~~i~~Nv~~N~v--------------------- 159 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELP----------GVRQVVANDLNENAVTSIQRNVELNGV--------------------- 159 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhc----------chhhhcccCCCHHHHHHHHhhhhhcCc---------------------
Confidence 3789999999999999998885 255799999999999999988764432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+.....|+..+ +-....||+|=. +-+-..-.+|+.+.+-++.||.|+++.
T Consensus 160 -------------------~~ive~~~~DA~~lM~~~~~~~~~FDvIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 160 -------------------EDIVEPHHSDANVLMYEHPMVAKFFDVIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred -------------------hhhcccccchHHHHHHhccccccccceEec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 01222223332222 122345666622 122234456777888889999999854
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.57 Score=38.41 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHH-------HHHHHhcccCCCCCCccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a-------~~~~~~~~~~~~~~~~~~~~~~d~ 74 (167)
-|.|...|||++....+. -++.++|.|++-.++.+. +.+++..+.. .-.+-...+|.
T Consensus 211 ivyDPFVGTGslLvsaa~-------------FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~ 274 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAH-------------FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADF 274 (421)
T ss_pred EEecCccccCceeeehhh-------------hcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecc
Confidence 478999999999877665 378899999999888743 3444443320 11233445555
Q ss_pred ccCC-CCCCCCceeeeeecc
Q psy889 75 EELP-IESDSYSAYTIAFGI 93 (167)
Q Consensus 75 ~~l~-~~~~~fd~~~~~~~~ 93 (167)
..-+ =....||.+++.++.
T Consensus 275 sn~~~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 275 SNPPLRSNLKFDAIVCDPPY 294 (421)
T ss_pred cCcchhhcceeeEEEeCCCc
Confidence 5544 336678888877655
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.35 Score=38.34 Aligned_cols=74 Identities=8% Similarity=0.021 Sum_probs=52.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
|+++|+.||.|.++.-+.++. ...+.++|+++.+++.-+.+.. ....+|+.++.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag------------~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAG------------FEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTT------------EEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHH
T ss_pred CcEEEEccCccHHHHHHHhcC------------cEEEEEeecCHHHHHhhhhccc------------ccccccccccccc
Confidence 689999999999999987743 3457799999999999888875 34577777775
Q ss_pred -CCCCCCceeeeeeccccccCC
Q psy889 79 -IESDSYSAYTIAFGIRNIDIP 99 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~ 99 (167)
++. ..|.++-+++=..+-..
T Consensus 57 ~l~~-~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 57 DLPK-DVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp HHHH-T-SEEEEE---TTTSTT
T ss_pred cccc-cceEEEeccCCceEecc
Confidence 554 58888888776555443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.31 Score=38.11 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=34.1
Q ss_pred CceEEeecccCC-CCC-CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 101 PRLRFLEANAEE-LPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 101 ~~~~~~~~d~~~-~~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.++++..++ +|. +... +.+...-.........+|..++..|.|||++++=|++.
T Consensus 157 ~~v~~vkG~F~dTLp~~p~~~--IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPDAPIER--IALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTEEEEES-HHHHCCC-TT----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ccEEEECCcchhhhccCCCcc--EEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 567777776544 221 1111 11111122345667899999999999999999977654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.29 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=31.3
Q ss_pred CccchhhHhhhhcccccc-----c------HHHHHHHHHHhcCCCcEEEEEe
Q psy889 116 ESDSYSAYTIAFGIRNVT-----R------IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~~~~-----~------~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++||.+.|.+++.++- + -.+.+.++.++|||||.|++.-
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 346799999988776552 1 2467789999999999999854
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.53 Score=36.45 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=40.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCC----CCccccccccccc-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEE- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~d~~~- 76 (167)
+|||.-+|-|.-++.++. + +.++++++.|+-+....+.-+++....+.. ..+++...+|..+
T Consensus 78 ~VLDaTaGLG~Da~vlA~-~------------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLAS-L------------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp -EEETT-TTSHHHHHHHH-H------------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred EEEECCCcchHHHHHHHc-c------------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 699999999999999875 4 678999999998877777666544321111 0255555555444
Q ss_pred CCCCCCCCc
Q psy889 77 LPIESDSYS 85 (167)
Q Consensus 77 l~~~~~~fd 85 (167)
++.+.++||
T Consensus 145 L~~~~~s~D 153 (234)
T PF04445_consen 145 LRQPDNSFD 153 (234)
T ss_dssp CCCHSS--S
T ss_pred HhhcCCCCC
Confidence 333344444
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.38 Score=37.37 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=48.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc-----cc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-----EE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~~ 76 (167)
++||+|.|..-+ ...++. ..-+.+.+|.|+++.+++.|+..+..... -+.-++..-..- ..
T Consensus 81 ~~LDIGvGAnCI----YPliG~-------~eYgwrfvGseid~~sl~sA~~ii~~N~~---l~~~I~lr~qk~~~~if~g 146 (292)
T COG3129 81 RILDIGVGANCI----YPLIGV-------HEYGWRFVGSEIDSQSLSSAKAIISANPG---LERAIRLRRQKDSDAIFNG 146 (292)
T ss_pred EEEeeccCcccc----cccccc-------eeecceeecCccCHHHHHHHHHHHHcCcc---hhhheeEEeccCccccccc
Confidence 689998876433 221110 00367899999999999999998864311 122222222221 11
Q ss_pred CCCCCCCCceeeeeecccc
Q psy889 77 LPIESDSYSAYTIAFGIRN 95 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~ 95 (167)
+-=..+.||+..+.++.+.
T Consensus 147 iig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 147 IIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cccccceeeeEecCCCcch
Confidence 2244788999999988853
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.66 E-value=2.3 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||..|+| .|..+..+++.. +.++++++.++...+.+++
T Consensus 168 ~vli~g~g~vG~~~~~la~~~------------G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM------------GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHH
Confidence 56666654 356666666654 6779999999888777653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=88.27 E-value=4.1 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|. |-.+...++++. ..+++.+|+++.-++.|++
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~G-----------A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMG-----------ASDVVITDLVANRLELAKK 212 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-----------CCcEEEeecCHHHHHHHHH
Confidence 688889886 566777788875 6789999999999999997
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.69 Score=37.29 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+..+.+.|++||.++....
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 466778899999999988654
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=87.44 E-value=2 Score=33.74 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAM 46 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 46 (167)
+||=+|+++|..-.++.+-.. +...+++++.|...
T Consensus 159 KVLYLGAasGttVSHvSDiVG----------peG~VYAVEfs~rs 193 (317)
T KOG1596|consen 159 KVLYLGAASGTTVSHVSDIVG----------PEGCVYAVEFSHRS 193 (317)
T ss_pred eEEEeeccCCceeehhhcccC----------CCceEEEEEecccc
Confidence 689999999999888888775 56779999998654
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=3.1 Score=37.45 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=32.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
.|+=+|+|-|-+....+++..... ...++++++-++........+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~g-------vkVrIyAVEKNPpAA~~tllr~ 748 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALG-------VRLRIFAIEKNLPAAAFTRMRW 748 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcC-------CcEEEEEEecCcchHHHHHHHH
Confidence 478899999988777777654211 3568999999966555555444
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.9 Score=34.77 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=48.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-C
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~ 80 (167)
|+|+.||.|.++.-+.++ +.+ +.++|+++..++..+.+... +...+|+.++.. +
T Consensus 1 vidLF~G~GG~~~Gl~~a-------------G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~ 56 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-------------GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSD 56 (315)
T ss_pred CEEEecCccHHHHHHHHc-------------CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhh
Confidence 689999999999888663 444 45799999999888876532 234567777642 2
Q ss_pred CCCCceeeeeecccccc
Q psy889 81 SDSYSAYTIAFGIRNID 97 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~ 97 (167)
...+|.+..+++=..+-
T Consensus 57 ~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 57 IPDFDILLGGFPCQPFS 73 (315)
T ss_pred CCCcCEEEecCCCcccc
Confidence 33567776666554443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.03 E-value=2.3 Score=37.79 Aligned_cols=43 Identities=9% Similarity=-0.163 Sum_probs=28.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCC-CCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTL-SEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~D~s~ 44 (167)
+|+|+|=|+|.......+.+.+..+..+ +.+...+++.+|..+
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 7999999999988888776632111111 111346899999754
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=84.81 E-value=5.7 Score=34.37 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=29.6
Q ss_pred eEEeeecCCCc-hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+|+=+|+|.=. .+...++.+ +++++++|.+++-++.+++
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l------------GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL------------GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH
Confidence 67888888744 444555554 7789999999999888875
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.00 E-value=0.89 Score=37.78 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=48.9
Q ss_pred CceEEeecccCCCC--CCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 101 PRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 101 ~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.++.+...++.+.. .+++++|.++.+..+.|+++ ....++++.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 67788887776542 45788999999988888765 678889999999999999997766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=83.11 E-value=0.76 Score=33.16 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=29.3
Q ss_pred cccccccccccCCCCCCCCceeeeeeccccccC
Q psy889 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 66 ~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+++|..+|++++|++++.||.+++.+.++++.+
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCC
Confidence 357899999999999999999999999988754
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.65 E-value=2.8 Score=31.72 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||-.|+|+ |..+..++++. +.++++++.++...+.++
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~------------g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAA------------GARVIVTDRSDEKLELAK 175 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEEcCCHHHHHHHH
Confidence 578888775 44555555543 678999999887766654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.9 Score=33.80 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCcEEEEEeec
Q psy889 137 KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.+..+.|++||.+++....
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecC
Confidence 3677889999999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.41 E-value=1.4 Score=35.70 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=62.4
Q ss_pred EEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 3 vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|.=+|.| .|..+..++.-+ ++.++-.|+|..-+......+.
T Consensus 171 v~iiGGGvvgtnaAkiA~gl------------gA~Vtild~n~~rl~~ldd~f~-------------------------- 212 (371)
T COG0686 171 VVVLGGGVVGTNAAKIAIGL------------GADVTILDLNIDRLRQLDDLFG-------------------------- 212 (371)
T ss_pred EEEECCccccchHHHHHhcc------------CCeeEEEecCHHHHhhhhHhhC--------------------------
Confidence 3344554 355566665544 7899999999877666654432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.....+...+...-...|+++....+..-+.++-+.++....||||+.++
T Consensus 213 -------------------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 213 -------------------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -------------------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 34555555444443334567888776555556677888899999999999986
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.1 Score=29.30 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=25.7
Q ss_pred eeecCCC--chHHHHHH-hhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 5 FYLVFPG--DIAFRFLN-YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 5 D~g~G~G--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
|+|++.| ..+..++. ... +..+++++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~----------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG----------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS------------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66665542 332 478899999999999998888
|
; PDB: 2PY6_A. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=81.54 E-value=3.5 Score=32.79 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.++++.|+++|.++...
T Consensus 243 ~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 243 AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred HHHHHHHHHHhcCCEEEEEe
Confidence 45778899999999998654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.10 E-value=4.9 Score=31.53 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=38.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
..|||.-+|+|....+..+ .+..++|+|+++..++.+.+++....
T Consensus 224 diVlDpf~GsGtt~~aa~~-------------~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 224 DIVLDPFAGSGTTGIAAKN-------------LGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CEEeecCCCCChHHHHHHH-------------cCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3699999999999888766 36789999999999999999997543
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.02 E-value=3.2 Score=35.51 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=33.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++++|+.||.|+++.-+-... ...+.++|+++.+.+.-+.+.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG------------~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG------------GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC------------CEEEEEEechHHHHHHHHHHc
Confidence 589999999999999986532 334668999998888877764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 167 | ||||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 1e-04 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 4e-04 |
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-36
Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 46/158 (29%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G I+ + VT DIN + + E AR + F
Sbjct: 41 SGKISLELASKG-------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
NA L S+ + + ++ P+P+ R
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSV--PDPKER------------------------- 120
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ + E +RVLKPG +EF + L
Sbjct: 121 ------SRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYR 152
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-32
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 54/158 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G +A F +V V D+ +L V
Sbjct: 48 GGHVANAFAPFVK-------------KVVAFDLTEDILKVARAFIEGN------------ 82
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G + ++ +++ +AE++P + + T
Sbjct: 83 ----------------------GHQQVE-------YVQGDAEQMPFTDERFHIVTCRIAA 113
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ +SEAYRVLK GG+ L ++ S N
Sbjct: 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 151
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-28
Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 54/158 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G A F YV D + M++V A++
Sbjct: 32 AGHTALAFSPYV-------------QECIGVDATKEMVEVASSFAQEK------------ 66
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G+ N+ F + AE LP DS+ T +
Sbjct: 67 ----------------------GVENVR-------FQQGTAESLPFPDDSFDIITCRYAA 97
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ + + KA+ E RVLK GRFL ++ + +L
Sbjct: 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 135
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 3e-26
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 51/156 (32%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G V + V D+ M++ ++ L
Sbjct: 48 AGFYLPYLSKMVGE----------KGKVYAIDVQEEMVNYAWEKVNKL------------ 85
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G++N++ L++ ++P+ ++ +AF
Sbjct: 86 ----------------------GLKNVE-------VLKSEENKIPLPDNTVDFIFMAFTF 116
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
++ K L E RV KP +++
Sbjct: 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 3e-21
Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 52/150 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
PG ++ L++ + D ++ M ++ + D
Sbjct: 54 PGALSIA------------LAKQSDFSIRALDFSKHMNEIALKNIADA------------ 89
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
+ + R++ ++ + +PIE + +
Sbjct: 90 ----------------------NLND------RIQIVQGDVHNIPIEDNYADLIVSRGSV 121
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ A E YR+LK GG+
Sbjct: 122 FFWEDVATAFREIYRILKSGGKTYIGGGFG 151
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-20
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 46/124 (37%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + AML VG +RA
Sbjct: 58 QKVGVEPSEAMLAVGRRRA----------------------------------------- 76
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
P ++ A E LP +S+ + + V +++ L EA RVL+PGG +
Sbjct: 77 -----PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131
Query: 156 EFSH 159
Sbjct: 132 VLEA 135
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 3e-18
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 46/123 (37%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + D ++ ML+V ++ +EA AE+LP S ++ A +A G
Sbjct: 78 EVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEA-VLALG--- 122
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ V DKA SE RVL P G +
Sbjct: 123 -------------------------------DVLSYVENKDKAFSEIRRVLVPDGLLIAT 151
Query: 156 EFS 158
+
Sbjct: 152 VDN 154
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 5e-18
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 41/124 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+T DI+ L+ + GI+N
Sbjct: 63 EITSIDISPESLEKARENTEKN----------------------------------GIKN 88
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ +FL+AN LP E S+ + F + ++ ++AL +VLKPGG +
Sbjct: 89 V-------KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
Query: 156 EFSH 159
E H
Sbjct: 142 EGDH 145
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-16
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 46/134 (34%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T+ D++ ML++ + R R
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRG--------------------------------------- 90
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA--LSEAYRVLKPGGRFL 153
N +++++EA+ + E + Y A I ++ DK +Y +LK G F+
Sbjct: 91 ----NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI 145
Query: 154 CLEFSHVNNSMLQW 167
+ H + ++
Sbjct: 146 NADLVHGETAFIEN 159
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ L+ AE LP++ +S+ + I V ++AL EAYR+LK GG +
Sbjct: 86 VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 6e-15
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
+ + ++ I +S A ++ +SE R+LK GR + +++ N
Sbjct: 58 KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117
Query: 162 NSM 164
+
Sbjct: 118 TGI 120
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-14
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 42/124 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
D + AML+V Q+ +
Sbjct: 63 RYIALDADAAMLEVFRQKIAGV-------------------------------------- 84
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ +++ ++A+A +P+ +S + V K L+EA RVLKPGG L
Sbjct: 85 ----DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140
Query: 156 EFSH 159
Sbjct: 141 WDQA 144
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-14
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
P L F++ + LP E++ + A + +AL+E RVLK G
Sbjct: 97 GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156
Query: 160 VNNSMLQW 167
Sbjct: 157 TAKPRENS 164
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 4e-12
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 85 SAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEA 142
S I + F+ +A +L E ++ I + ++ + E
Sbjct: 69 SEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEV 128
Query: 143 YRVLKPGGRFLCLEFSH 159
RVLKP G+F+
Sbjct: 129 RRVLKPSGKFIMYFTDL 145
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 4e-12
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+P++ + AE L + S I + + ++K+ E R+++ G L
Sbjct: 75 HPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 6e-12
Identities = 20/125 (16%), Positives = 30/125 (24%), Gaps = 33/125 (26%)
Query: 36 HVTVADINRAMLDVGEQRAR---DLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG 92
V D+ L+V + + F +RFL+ E L
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLA-------------- 155
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
AE + S T E +RVL+ GG
Sbjct: 156 ----------------TAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 153 LCLEF 157
+
Sbjct: 200 YFSDV 204
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-11
Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 39/136 (28%)
Query: 36 HVTVADIN----RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
HVT DI A L +G+ L + F +++L
Sbjct: 70 HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL-------------- 115
Query: 92 GIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
PI + +A + + +
Sbjct: 116 ---------------------GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDH 154
Query: 152 FLCLEFSHVNNSMLQW 167
E+S ++ Q
Sbjct: 155 VDVAEWSMQPTALDQI 170
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-10
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 45/136 (33%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L T D +L + R L
Sbjct: 40 LMPLLPEGSKYTGIDSGETLLAEARELFRLL----------------------------- 70
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
FLE +A E+ + D Y + ++T + L + +
Sbjct: 71 -------------PYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSV 116
Query: 147 KPGGRFLCLEFSHVNN 162
K GG+ +C E ++N
Sbjct: 117 KKGGKIICFEPHWISN 132
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 8e-10
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFSH 159
E + + S + ++T +K A+++ ++L GG+ + +
Sbjct: 90 EFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148
Query: 160 VNNSML 165
+
Sbjct: 149 ADQDAY 154
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-09
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
+ D+ + R + ++P+E +S + T I L EA RVLKPGG
Sbjct: 89 VHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLL 147
Query: 153 LCLEF 157
E
Sbjct: 148 KVAEV 152
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-09
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKAL 139
S + N +L + + +LP + +S YS TI +N + +A+
Sbjct: 54 ISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAI 111
Query: 140 SEAYRVLKPGGRFLCLEFSH 159
E RVLKPGG +
Sbjct: 112 DEIKRVLKPGGLACINFLTT 131
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 4e-09
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 41/130 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ H VT D +D+ + AR + + N R+ + + ++LP ++
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNAR---QSGLQN-RVTGIVGSMDDLPFRNEELDLIW 119
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I NI + L+E + LK
Sbjct: 120 SEGAIYNIGFE-------------------------------------RGLNEWRKYLKK 142
Query: 149 GGRFLCLEFS 158
GG E S
Sbjct: 143 GGYLAVSECS 152
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-08
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 101 PRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
P R++ + I + SA G + AL+ +R L GR + +
Sbjct: 89 PEARWVVGDLSVDQISETDFDLIVSAGN-VMGFLAEDGREPALANIHRALGADGRAV-IG 146
Query: 157 FSH 159
F
Sbjct: 147 FGA 149
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-08
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
P+ + + A+ ++L + DS+ + + V + + ++ L PGG F+
Sbjct: 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVF 142
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-08
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLC 154
P + F +L ++ + + ++ + AL ++ GG L
Sbjct: 84 PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 6e-08
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+P + + + E++ IE D+Y+ + + + D + Y LK G F+
Sbjct: 88 TSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIF 143
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-07
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 41/131 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+++ +T D+ +++ + A K + R++ + + + LP +++
Sbjct: 64 LADYVKGQITGIDLFPDFIEIFNENAV---KANCAD-RVKGITGSMDNLPFQNEELDLIW 119
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I NI + ++E + LK
Sbjct: 120 SEGAIYNIGFE-------------------------------------RGMNEWSKYLKK 142
Query: 149 GGRFLCLEFSH 159
GG E S
Sbjct: 143 GGFIAVSEASW 153
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
P L F A+A ++ A + V + A++ ++ LK GGRF+
Sbjct: 100 PHLHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
Query: 161 NNSML 165
N +
Sbjct: 159 NIKYI 163
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
R+ F A+A +LP E S+ A + ++ +AL E RVL+PGG +F
Sbjct: 112 RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-07
Identities = 15/150 (10%), Positives = 37/150 (24%), Gaps = 37/150 (24%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G+I + L+ V P + V + + + ++ + N + +
Sbjct: 63 AGEIDLQILSKVQAQYPGVCI-----NNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAW 115
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
+ + E + E + + +
Sbjct: 116 HKETSSEYQ------------------------------SRMLEKKELQKWDFIHMIQML 145
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
V I L + +L + L + S
Sbjct: 146 YYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-07
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 43/139 (30%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + DI L + +
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGE-------------------------------- 124
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVL 146
G R + + ++ E DSY I + I ++T + L L
Sbjct: 125 --EGKRVRN-------YFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSL 175
Query: 147 KPGGRFLCLEFSHVNNSML 165
+P G + + +L
Sbjct: 176 RPNGIIVIKDNMAQEGVIL 194
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-07
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 100 NPRLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
N ++ F + +++ Y+ A ++ +K + Y+ LKP G L ++
Sbjct: 101 NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160
Query: 158 SHVN 161
Sbjct: 161 CATE 164
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-06
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 143
S+ +A + ++ +++N + I +D++ F + + + Y
Sbjct: 59 QSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY 118
Query: 144 RVLKPGGRFLCLEFS 158
+ LKPGG F+ F+
Sbjct: 119 QGLKPGGVFILEGFA 133
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-06
Identities = 12/134 (8%), Positives = 33/134 (24%), Gaps = 36/134 (26%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
+++ P + +D++ M+ E P + F +++++
Sbjct: 54 MAQELKPFEQIIGSDLSATMIKTAEVIKEG---SPDTYKNVSFKISSSDDFKFLGAD--- 107
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
++ T + +K AY L
Sbjct: 108 ---------------------------SVDKQKIDMITAVECA-HWFDFEKFQRSAYANL 139
Query: 147 KPGGRFLCLEFSHV 160
+ G ++
Sbjct: 140 RKDGTIAIWGYADP 153
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-06
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158
+ F + + + + + A A + +V + + PGG ++ +
Sbjct: 90 DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148
Query: 159 H 159
Sbjct: 149 D 149
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-06
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 41/129 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + + + ML+ ++ + P +F+ A+ E + ++Y
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYDLIV 163
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I + + + K + L P
Sbjct: 164 IQWTAIYL--TDADFV--------------------------------KFFKHCQQALTP 189
Query: 149 GGRFLCLEF 157
G E
Sbjct: 190 NGYIFFKEN 198
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-06
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 28/131 (21%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L P+VT D + ++ + P+LR+ + +L S S+
Sbjct: 60 LFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDV-V 111
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
+ G L L A + V +D+ LSE RVL P
Sbjct: 112 LEKGT---------LDALLAGERD-----------PWTVSSEGVHTVDQVLSEVSRVLVP 151
Query: 149 GGRFLCLEFSH 159
GGRF+ + +
Sbjct: 152 GGRFISMTSAA 162
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-06
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 40/118 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V D++ ML V ++A++ N ++ FL+ + E+ + + + A T+ F
Sbjct: 65 EVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFK-NEFDAVTMFFS--- 114
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+ + K S+ LKPGG F+
Sbjct: 115 ------------------------------TIMYFDEEDLRKLFSKVAEALKPGGVFI 142
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-06
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 39/118 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D++ ML++ +++A + N + F + EL + + A TI N
Sbjct: 56 EVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVDAITILCDSLN 108
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+L+ A+ + + A R+L GG+ L
Sbjct: 109 ---------YLQTEAD-----------------------VKQTFDSAARLLTDGGKLL 134
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 102 RLRFLEANAEELPIESDSY-SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ + E+P E +SY ++ + + K E RVLKP G +
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMK 190
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-05
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 30/123 (24%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI + ++ DL + R+ ++ + + D + F +
Sbjct: 49 RVFGFDIQDKAIANTTKKLTDLNLID----RVTLIKDGHQNMDKYIDCPVK-AVMFNLGY 103
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ + +ALS+A +L GG +
Sbjct: 104 LPSGDHS-------------------------ISTRPETTIQALSKAMELLVTGGIITVV 138
Query: 156 EFS 158
+
Sbjct: 139 IYY 141
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-05
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 43 NRAMLDVGEQRARDLFKVPVPNPRLRF--LEANAEELPIESDSYSAYTIAFGIRNIDIPN 100
+R +D+G R+++K+ + + + ++ E L S G+ N
Sbjct: 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN----- 79
Query: 101 PRLRFLEANAEELPIE-SDSYSAYTIAF---GIRNVTRIDKA--LSEAYRVLKPGGRF 152
+ F+ A AE LP E + + +I F + LS + K F
Sbjct: 80 --VVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHF 135
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 9e-05
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 102 RLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+R N + P + + +++ + + + SE R LK GGR++ +
Sbjct: 168 HVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 1e-04
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 38/123 (30%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ D + LD + A ++ +A +L + Y T
Sbjct: 145 QLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR-EGYDLLTSNGLN-- 197
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
I P+ R+ + ++ LKPGG +
Sbjct: 198 IYEPDDA-------------------------------RVTELYRRFWQALKPGGALVTS 226
Query: 156 EFS 158
+
Sbjct: 227 FLT 229
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
P++ F A++ LP S A + E RV+KPGG +
Sbjct: 129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVI 175
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 4e-04
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 8/58 (13%)
Query: 101 PRLRFLEANA-EELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
P E N ELP + + G + + + P FL +
Sbjct: 91 PHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLYVG 142
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 37.9 bits (87), Expect = 5e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 109 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 163
N ++L + S++ + + L+E R+L+PGG E
Sbjct: 50 NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD 108
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 6e-04
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 36/118 (30%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT +++ ++L +R + R ++ + ++ + I+ G
Sbjct: 106 EVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQGDMSAFALD-KRFGTVVISSG--- 159
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+ + + L+PGG+FL
Sbjct: 160 ------------------------------SINELDEADRRGLYASVREHLEPGGKFL 187
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 6e-04
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 153
NP + + + +SA T F + +D AL + P G +
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 167 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.74 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.74 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.73 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.72 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.71 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.71 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.7 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.69 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.69 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.69 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.68 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.68 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.68 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.68 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.68 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.67 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.67 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.66 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.66 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.66 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.66 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.65 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.65 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.65 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.64 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.63 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.63 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.63 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.62 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.62 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.62 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.62 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.61 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.61 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.61 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.61 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.6 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.6 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.6 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.6 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.59 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.59 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.59 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.59 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.58 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.58 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.58 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.58 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.57 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.57 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.57 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.57 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.56 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.56 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.56 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.55 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.54 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.54 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.54 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.54 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.54 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.54 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.54 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.53 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.53 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.52 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.52 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.51 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.51 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.51 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.51 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.51 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.5 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.5 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.5 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.5 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.5 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.49 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.49 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.49 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.49 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.49 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.49 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.49 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.49 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.49 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.48 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.48 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.48 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.48 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.48 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.47 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.47 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.46 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.46 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.46 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.46 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.46 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.45 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.45 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.45 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.45 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.44 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.44 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.44 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.44 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.44 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.44 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.43 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.43 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.43 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.43 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.43 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.41 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.41 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.41 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.41 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.4 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.4 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.4 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.4 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.39 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.39 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.39 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.39 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.39 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.39 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.37 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.37 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.37 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.36 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.36 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.36 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.36 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.36 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.36 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.36 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.35 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.35 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.35 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.35 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.34 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.34 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.33 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.33 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.33 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.31 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.3 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.3 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.3 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.3 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.3 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.28 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.28 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.27 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.27 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.26 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.26 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.26 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.26 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.25 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.24 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.23 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.23 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.22 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.21 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.21 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.19 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.18 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.17 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.17 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.16 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.13 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.1 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.1 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.09 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.09 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.04 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.03 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.99 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.98 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.96 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.94 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.92 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.9 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.89 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.87 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.86 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.84 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.82 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.81 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.77 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.76 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.7 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.69 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.68 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.67 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.67 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.63 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.55 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.55 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.52 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.5 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.48 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.48 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.46 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.45 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.36 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.36 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.32 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.31 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.3 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.29 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.28 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.23 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.22 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.14 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.14 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.04 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.03 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.82 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.67 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.67 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.67 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.67 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.5 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.24 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.15 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.49 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.47 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.46 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.43 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.18 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.58 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.54 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.47 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.41 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.34 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.24 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.09 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.05 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.39 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.35 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.14 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.85 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.98 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.93 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 92.6 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.79 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 91.43 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.41 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.38 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.12 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.03 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 90.81 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.43 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 89.52 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.29 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 89.07 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.05 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.89 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.61 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 88.09 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.08 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 87.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.8 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 87.54 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 86.73 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.49 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.47 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 86.18 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 86.15 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 86.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.76 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 85.62 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.57 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.49 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 85.44 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 85.39 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 85.3 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.36 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.17 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.09 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 84.04 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.26 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.68 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 80.33 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.3 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=138.37 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=93.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+.. ++.+++|+|+|+.|++.|++++...+.
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~~---------~~~~v~gvD~s~~ml~~A~~~~~~~~~--------------------- 121 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKA--------------------- 121 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCCS---------SSCEEEEEESCHHHHHHHHHHHHTSCC---------------------
T ss_pred CEEEEEeCCCCHHHHHHHHhcCC---------CCCEEEEEECCHHHHHHHHHHHHhhcc---------------------
Confidence 37999999999999999987631 367899999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+.++|..++++. .||+|++..++++++. ...+|++++++|||||.|++.+..
T Consensus 122 -------------------~~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 122 -------------------PTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp -------------------SSCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -------------------CceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 14688888998887764 5999999999998864 457899999999999999999877
Q ss_pred ccCCc
Q psy889 159 HVNNS 163 (167)
Q Consensus 159 ~~~~~ 163 (167)
..+.+
T Consensus 181 ~~~~~ 185 (261)
T 4gek_A 181 SFEDA 185 (261)
T ss_dssp CCSSH
T ss_pred CCCCH
Confidence 66543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-19 Score=134.80 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=94.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+.
T Consensus 39 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~--------------------- 84 (260)
T 1vl5_A 39 EEVLDVATGGGHVANAFAPF-------------VKKVVAFDLTEDILKVARAFIEGNGH--------------------- 84 (260)
T ss_dssp CEEEEETCTTCHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeCCCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 47999999999999999874 35899999999999999998876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|.+.+++.+++||+|++..+++++++...++++++++|||||++++.+...+
T Consensus 85 --------------------~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (260)
T 1vl5_A 85 --------------------QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 144 (260)
T ss_dssp --------------------CSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred --------------------CceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCC
Confidence 468888889888888888999999999999999999999999999999999999887665
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
+.
T Consensus 145 ~~ 146 (260)
T 1vl5_A 145 EN 146 (260)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-18 Score=126.70 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=97.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++++|+|+.+++.++++....+.
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 87 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVG----------EKGKVYAIDVQEEMVNYAWEKVNKLGL--------------------- 87 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHT----------TTCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEEecCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999999763 357899999999999999999877664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....+..+++||+|++..+++++++...++++++++|+|||.+++.++...
T Consensus 88 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 88 --------------------KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp --------------------TTEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred --------------------CcEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 468888888888888888999999999999999999999999999999999999987755
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 148 ~ 148 (219)
T 3dh0_A 148 E 148 (219)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=128.96 Aligned_cols=108 Identities=27% Similarity=0.390 Sum_probs=95.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+.
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 68 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPY-------------VQECIGVDATKEMVEVASSFAQEKGV--------------------- 68 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEEccCcCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999999874 45899999999999999998876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|.+.+++.+++||+|++..+++++++...++++++++|||||++++.+...+
T Consensus 69 --------------------~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 69 --------------------ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp --------------------CSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred --------------------CCeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 467888888888888888999999999999999999999999999999999999887765
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
+.
T Consensus 129 ~~ 130 (239)
T 1xxl_A 129 ED 130 (239)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=135.18 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=86.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+++
T Consensus 42 ~vLDvGcGtG~~~~~l~~~-------------~~~v~gvD~s~~ml~~a~~~---------------------------- 80 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEF-------------FERVHAVDPGEAQIRQALRH---------------------------- 80 (257)
T ss_dssp EEEEESCTTTTTHHHHHTT-------------CSEEEEEESCHHHHHTCCCC----------------------------
T ss_pred CEEEEcCCCCHHHHHHHHh-------------CCEEEEEeCcHHhhhhhhhc----------------------------
Confidence 7999999999999999873 57899999999999876521
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.++.+...+.+++++.+++||+|++..++|++ +..+++++++|+|||||.|++..+..+.
T Consensus 81 -------------------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 81 -------------------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp -------------------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred -------------------CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 46888899999999999999999999999877 4788999999999999999998876543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-18 Score=131.17 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=96.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+.
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 130 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKF------------GVSIDCLNIAPVQNKRNEEYNNQAGL--------------------- 130 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHHh------------CCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 479999999999999999876 56899999999999999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|...+++.+++||+|++..+++++++...++++++++|||||++++.+....
T Consensus 131 -------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 131 -------------------ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp -------------------TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -------------------CcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 1468888899988888888999999999999999999999999999999999999887654
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 192 ~ 192 (297)
T 2o57_A 192 D 192 (297)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=129.54 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=93.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+.
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~--------------------- 84 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDH------------GITGTGIDMSSLFTAQAKRRAEELGV--------------------- 84 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHT------------CCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHhc------------CCeEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 489999999999999999876 56899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|..+.+. +++||+|++..+++++++...++++++++|||||++++.+...
T Consensus 85 -------------------~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 85 -------------------SERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp -------------------TTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred -------------------CcceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 1368888888888776 7889999999999999999999999999999999999987543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=128.76 Aligned_cols=108 Identities=27% Similarity=0.280 Sum_probs=95.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++....+.
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 109 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATAR------------DVRVTGISISRPQVNQANARATAAGL--------------------- 109 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHS------------CCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHhc------------CCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 489999999999999998865 57899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|...+++.+++||+|++..+++++++...++++++++|||||++++.++...
T Consensus 110 -------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 110 -------------------ANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp -------------------TTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred -------------------CcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 1468888889888888888999999999999999999999999999999999999887654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=126.45 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=93.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.++++....+.
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 94 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYV------------KGQITGIDLFPDFIEIFNENAVKANC--------------------- 94 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHC------------CSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEeCCCCCHHHHHHHHhC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999999876 34899999999999999999877654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|...+++.+++||+|++..+++++ +...++++++++|||||++++.+.+
T Consensus 95 -------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 95 -------------------ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp -------------------TTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred -------------------CCceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 145888899998888888999999999999988 7899999999999999999998865
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=123.38 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +.+++++|+|+.+++.+++++...+.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~~---------------------- 91 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS------------DFSIRALDFSKHMNEIALKNIADANL---------------------- 91 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS------------EEEEEEEESCHHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEECCCCCHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHhccc----------------------
Confidence 69999999999999998862 67899999999999999999876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..++++.+++||+|++..+++++++...++++++++|+|||.+++.+..
T Consensus 92 ------------------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 92 ------------------NDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp ------------------TTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ------------------cCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 14688889999888888889999999999999999999999999999999999997643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=129.68 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=93.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||+|..+..+++.+. .+.+++|+|+|+.+++.++++.... +.
T Consensus 38 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------------- 87 (299)
T 3g5t_A 38 KLLVDVGCGPGTATLQMAQELK----------PFEQIIGSDLSATMIKTAEVIKEGSPDT-------------------- 87 (299)
T ss_dssp SEEEEETCTTTHHHHHHHHHSS----------CCSEEEEEESCHHHHHHHHHHHHHCC-C--------------------
T ss_pred CEEEEECCCCCHHHHHHHHhCC----------CCCEEEEEeCCHHHHHHHHHHHHhccCC--------------------
Confidence 4799999999999999997652 3789999999999999999998764 11
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCc------cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES------DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|.+++++.. ++||+|++..+++++ +...++++++++|+|||.|+
T Consensus 88 --------------------~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~ 146 (299)
T 3g5t_A 88 --------------------YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIA 146 (299)
T ss_dssp --------------------CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEE
Confidence 146888888888877665 789999999999999 99999999999999999999
Q ss_pred EEeeccc
Q psy889 154 CLEFSHV 160 (167)
Q Consensus 154 ~~~~~~~ 160 (167)
+.+++.+
T Consensus 147 i~~~~~~ 153 (299)
T 3g5t_A 147 IWGYADP 153 (299)
T ss_dssp EEEEEEE
T ss_pred EEecCCc
Confidence 9776653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=124.94 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=84.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+++....... . ..+
T Consensus 24 ~~vLD~GCG~G~~~~~la~~-------------g~~V~gvD~S~~~l~~a~~~~~~~~~~------~--~~~-------- 74 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQ-------------GYHVVGAELSEAAVERYFTERGEQPHI------T--SQG-------- 74 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHH-------------CCEEEEEEECHHHHHHHHHHHCSCSEE------E--EET--------
T ss_pred CEEEEeCCCCcHhHHHHHHC-------------CCeEEEEeCCHHHHHHHHHHccCCccc------c--ccc--------
Confidence 47999999999999999873 568999999999999999875421000 0 000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-cchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+. .....++.+..+|+.+++..+ ++||+|++..++++++. ..+++++++++|||||+++++.+
T Consensus 75 --~~~-----------~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 75 --DFK-----------VYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp --TEE-----------EEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred --ccc-----------cccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 000 000146788889988887654 78999999888877753 46789999999999999555444
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 142 ~ 142 (203)
T 1pjz_A 142 E 142 (203)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=121.58 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=90.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++++|+|+.+++.++++....+
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~---------------------- 70 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVED------------GYKTYGIEISDLQLKKAENFSRENN---------------------- 70 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHT------------TCEEEEEECCHHHHHHHHHHHHHHT----------------------
T ss_pred CEEEEECCCCCHHHHHHHHhC------------CCEEEEEECCHHHHHHHHHHHHhcC----------------------
Confidence 479999999999866555432 6789999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....++.+++||+|++..+++++ .+...++++++++|||||.+++.+++
T Consensus 71 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 71 --------------------FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp --------------------CCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------CceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 24677778888777777899999998888888 67899999999999999999999988
Q ss_pred ccCCc
Q psy889 159 HVNNS 163 (167)
Q Consensus 159 ~~~~~ 163 (167)
..+.+
T Consensus 131 ~~~~~ 135 (209)
T 2p8j_A 131 TKDER 135 (209)
T ss_dssp TTSTT
T ss_pred ccchh
Confidence 66543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=126.74 Aligned_cols=105 Identities=21% Similarity=0.198 Sum_probs=93.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.++++....+.
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 94 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHV------------TGQVTGLDFLSGFIDIFNRNARQSGL--------------------- 94 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTC------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHhcc------------CCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999998852 56899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..++++.+++||+|++..+++++ +...++++++++|||||++++.+..
T Consensus 95 -------------------~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 95 -------------------QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp -------------------TTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred -------------------CcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 146888999998888878899999999999888 8899999999999999999998875
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=126.78 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++....
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~----------------------- 101 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKY------------GAHTHGIDICSNIVNMANERVSGN----------------------- 101 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHTCCSC-----------------------
T ss_pred CEEEEECCCCCHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHHhhcC-----------------------
Confidence 489999999999999999876 578999999999999999765422
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....++.+++||+|++..+++++ ++...++++++++|||||.+++.++.
T Consensus 102 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 102 --------------------NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp --------------------TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 25788888888888878899999999999999 88999999999999999999999887
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 162 ~~~ 164 (266)
T 3ujc_A 162 ATE 164 (266)
T ss_dssp ESC
T ss_pred cCC
Confidence 655
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=128.82 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=95.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++|+|+++.+++.++++....+.
T Consensus 119 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 165 (312)
T 3vc1_A 119 DTLVDAGCGRGGSMVMAHRRF------------GSRVEGVTLSAAQADFGNRRARELRI--------------------- 165 (312)
T ss_dssp CEEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCCCHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999999865 57899999999999999999887654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..++++.+++||+|++..+++++ +...++++++++|||||++++.+.+..
T Consensus 166 -------------------~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 166 -------------------DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp -------------------TTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -------------------CCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 146889999998888888899999999999988 599999999999999999999887655
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 226 ~ 226 (312)
T 3vc1_A 226 P 226 (312)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=126.92 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=95.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+.
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 86 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNN-----------PDAEITSIDISPESLEKARENTEKNGI--------------------- 86 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHC-----------TTSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEecCCCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999999876 378999999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|...++..+++||+|++..+++++++...++++++++|||||++++.+..
T Consensus 87 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 87 --------------------KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp --------------------CSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 4688888888888888889999999999999999999999999999999999997754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=123.94 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=91.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.++++....
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~----------------------- 91 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKY-----------PEATFTLVDMSEKMLEIAKNRFRGN----------------------- 91 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHTCSC-----------------------
T ss_pred CeEEEecCCCCHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHhhccC-----------------------
Confidence 489999999999999999976 3789999999999999999876422
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....+.. ++||+|++..+++++++.. .++++++++|||||.+++.++.
T Consensus 92 --------------------~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 92 --------------------LKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp --------------------TTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3578888888887766 8899999999999987655 5999999999999999999877
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 151 ~~~~ 154 (234)
T 3dtn_A 151 HGET 154 (234)
T ss_dssp BCSS
T ss_pred CCCC
Confidence 6554
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=127.55 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=91.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...+.
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 115 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAER-------------GHQVILCDLSAQMIDRAKQAAEAKGV--------------------- 115 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHC-CC---------------------
T ss_pred CEEEEeCCcchHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999999883 57899999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|....+ +.+++||+|++..+++++++...++++++++|||||++++.+++.
T Consensus 116 -------------------~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 116 -------------------SDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp -------------------GGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred -------------------CcceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 136788888887776 667899999999999999999999999999999999999987653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=121.60 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=88.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~-------------------------- 83 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASL-------------GHQIEGLEPATRLVELARQTH-------------------------- 83 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHT-------------TCCEEEECCCHHHHHHHHHHC--------------------------
T ss_pred CeEEEecCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHhC--------------------------
Confidence 47999999999999999873 568999999999999999763
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+++..+++||+|++..++++++ +...++++++++|+|||++++.++.
T Consensus 84 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 143 (203)
T 3h2b_A 84 --------------------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS 143 (203)
T ss_dssp --------------------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --------------------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 356777888877777778999999999999886 8899999999999999999998876
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 144 ~~~ 146 (203)
T 3h2b_A 144 GPS 146 (203)
T ss_dssp CSS
T ss_pred CCc
Confidence 544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-17 Score=118.14 Aligned_cols=104 Identities=15% Similarity=0.028 Sum_probs=88.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 79 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAAN-------------GYDVDAWDKNAMSIANVERIKSIENL--------------------- 79 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CeEEEEcCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHhCCC---------------------
Confidence 37999999999999999873 56899999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....+. +++||+|++..++++++ +...++++++++|+|||.+++.+..
T Consensus 80 --------------------~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 80 --------------------DNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp --------------------TTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred --------------------CCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 357788888877766 78899999999998887 7899999999999999998887654
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 139 ~ 139 (199)
T 2xvm_A 139 D 139 (199)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-17 Score=120.47 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ...+++++|+|+.+++.+++++...+...
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~------------------- 80 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDS-----------FFEQITGVDVSYRSLEIAQERLDRLRLPR------------------- 80 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCT-----------TCSEEEEEESCHHHHHHHHHHHTTCCCCH-------------------
T ss_pred CEEEEeCCCCCHHHHHHHhhC-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCc-------------------
Confidence 479999999999999998865 25789999999999999999876443300
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....++.+...|....+...++||+|++..+++++++. ..++++++++|||||.+++...
T Consensus 81 -----------------~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 81 -----------------NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp -----------------HHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -----------------ccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 00026888888887766666889999999999988754 8999999999999998777554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=124.46 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=89.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. .
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~---~--------------------- 89 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHG------------AKKVLGIDLSERMLTEAKRKTT---S--------------------- 89 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHCC---C---------------------
T ss_pred CEEEEECCCCCHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHhhc---c---------------------
Confidence 479999999999999998853 2389999999999999998764 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|...++..+++||+|++..+++++++...++++++++|||||.+++...+
T Consensus 90 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 90 --------------------PVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp --------------------TTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 4678888888888887889999999999999999999999999999999999996543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=125.95 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=91.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.++++....+.
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 120 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEY------------DVNVIGLTLSENQYAHDKAMFDEVDS--------------------- 120 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEECCHHHHHHHHHHHHHSCC---------------------
T ss_pred CEEEEeeccCcHHHHHHHHhC------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 489999999999999999976 57899999999999999999877654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc---------HHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---------IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~ 151 (167)
..++.+...|..++ +++||+|++..+++++++ ...++++++++|||||.
T Consensus 121 -------------------~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~ 178 (302)
T 3hem_A 121 -------------------PRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 178 (302)
T ss_dssp -------------------SSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCE
T ss_pred -------------------CCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 13678888888765 678999999999998854 47999999999999999
Q ss_pred EEEEeecccC
Q psy889 152 FLCLEFSHVN 161 (167)
Q Consensus 152 l~~~~~~~~~ 161 (167)
+++.++..++
T Consensus 179 l~i~~~~~~~ 188 (302)
T 3hem_A 179 MLLHTITIPD 188 (302)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeccC
Confidence 9998887654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=119.50 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=88.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ...+++++|+|+.+++.+++++...+...
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~------------------- 80 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDK-----------SFEQITGVDVSYSVLERAKDRLKIDRLPE------------------- 80 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTST-----------TCCEEEEEESCHHHHHHHHHHHTGGGSCH-------------------
T ss_pred CEEEEecCCCCHHHHHHHhcC-----------CCCEEEEEECCHHHHHHHHHHHHhhcccc-------------------
Confidence 479999999999999998865 25789999999999999999886544300
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....++.+...|....+...++||+|++..+++++++. ..++++++++|||||.+++...
T Consensus 81 -----------------~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 81 -----------------MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp -----------------HHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -----------------ccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 00026788888887777777899999999999998854 7999999999999997766543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=123.66 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=90.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.++++....+.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvd~s~~~~~~a~~~~~~~~~--------------------- 112 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKY------------DVNVVGLTLSKNQANHVQQLVANSEN--------------------- 112 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTCCC---------------------
T ss_pred CEEEEECCcccHHHHHHHHHc------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 479999999999999999766 46899999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+++ ++||+|++..+++++ .+...++++++++|||||.+++.++.
T Consensus 113 -------------------~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 113 -------------------LRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp -------------------CSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -------------------CCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 146778888877665 789999999999988 67899999999999999999998877
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 171 ~~~ 173 (287)
T 1kpg_A 171 GLH 173 (287)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=123.82 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=90.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+.
T Consensus 81 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 127 (241)
T 2ex4_A 81 SCALDCGAGIGRITKRLLLPL------------FREVDMVDITEDFLVQAKTYLGEEGK--------------------- 127 (241)
T ss_dssp SEEEEETCTTTHHHHHTTTTT------------CSEEEEEESCHHHHHHHHHHTGGGGG---------------------
T ss_pred CEEEEECCCCCHHHHHHHHhc------------CCEEEEEeCCHHHHHHHHHHhhhcCC---------------------
Confidence 379999999999999888754 45899999999999999988765422
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....+..+++||+|++..+++++++ ...++++++++|+|||++++.+..
T Consensus 128 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 128 --------------------RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp --------------------GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------ceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 3577788888777777778999999999998877 558999999999999999998865
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 188 ~~ 189 (241)
T 2ex4_A 188 AQ 189 (241)
T ss_dssp BS
T ss_pred CC
Confidence 44
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=123.08 Aligned_cols=103 Identities=27% Similarity=0.329 Sum_probs=89.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++. ....
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~-~~~~--------------------- 85 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIAR-------------GYRYIALDADAAMLEVFRQKI-AGVD--------------------- 85 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTT-------------TCEEEEEESCHHHHHHHHHHT-TTSC---------------------
T ss_pred CEEEEeCCcCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHh-hccC---------------------
Confidence 47999999999999999873 578999999999999999886 2221
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|...+++.+++||+|++..+++++++...++++++++|||||.+++. +..
T Consensus 86 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~ 143 (263)
T 2yqz_A 86 --------------------RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQ 143 (263)
T ss_dssp --------------------TTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEE
T ss_pred --------------------CceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecC
Confidence 4688888888888877889999999999999999999999999999999999987 443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=120.07 Aligned_cols=111 Identities=24% Similarity=0.266 Sum_probs=92.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+...
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~------------------- 79 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASK-------------GYSVTGIDINSEAIRLAETAARSPGLNQ------------------- 79 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHTTCCSCCS-------------------
T ss_pred CeEEEECCCCCHHHHHHHhC-------------CCeEEEEECCHHHHHHHHHHHHhcCCcc-------------------
Confidence 47999999999999999883 5689999999999999998876543200
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH---HHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID---KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....++.+...+....+..+++||+|++..+++++++.. .++++++++|+|||++++.++
T Consensus 80 -----------------~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 80 -----------------KTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp -----------------SSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------------ccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 001357888888888888788999999999999998876 899999999999999999887
Q ss_pred ccc
Q psy889 158 SHV 160 (167)
Q Consensus 158 ~~~ 160 (167)
...
T Consensus 143 ~~~ 145 (235)
T 3sm3_A 143 GQN 145 (235)
T ss_dssp BCC
T ss_pred Ccc
Confidence 653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-17 Score=122.99 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=85.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++..
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~------------------------- 85 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEH-------------FNDITCVEASEEAISHAQGRLK------------------------- 85 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTT-------------CSCEEEEESCHHHHHHHHHHSC-------------------------
T ss_pred CcEEEECCCCCHHHHHHHHh-------------CCcEEEEeCCHHHHHHHHHhhh-------------------------
Confidence 37999999999999998873 4579999999999999998753
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHH-HhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|.++. ..+++||+|++..+++++++...++++++ ++|||||++++.+.+.
T Consensus 86 --------------------~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 86 --------------------DGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp --------------------SCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred --------------------CCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 1466777777666 35678999999999999999999999999 9999999999987654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-17 Score=125.86 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=91.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.++ .+.+++|+|+|+.+++.++++....+
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~---------------------- 71 (284)
T 3gu3_A 24 VHIVDYGCGYGYLGLVLMPLLP----------EGSKYTGIDSGETLLAEARELFRLLP---------------------- 71 (284)
T ss_dssp CEEEEETCTTTHHHHHHTTTSC----------TTCEEEEEESCHHHHHHHHHHHHSSS----------------------
T ss_pred CeEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHhcC----------------------
Confidence 4799999999999999988763 25789999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+++. +++||+|++..+++++++...++++++++|||||++++.+..
T Consensus 72 --------------------~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 72 --------------------YDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp --------------------SEEEEEESCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --------------------CceEEEEcchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 267888888888776 468999999999999999999999999999999999998765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-17 Score=122.10 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=90.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.. .
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~---~--------------------- 97 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRT-------------GYKAVGVDISEVMIQKGKERGE---G--------------------- 97 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHTTTC---B---------------------
T ss_pred CeEEEEcCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhcc---c---------------------
Confidence 47999999999999999883 5689999999999999987631 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++.+++||+|++..+++++++...++++++++|+|||++++.+++..
T Consensus 98 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 98 --------------------PDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp --------------------TTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred --------------------CCceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 467888888888888789999999999999999999999999999999999999886544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=122.90 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=88.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~-----------~~~~v~~~D~s~~~~~~a~~~~-------------------------- 77 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRY-----------GVNVITGIDSDDDMLEKAADRL-------------------------- 77 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHH-----------CTTSEEEEESCHHHHHHHHHHS--------------------------
T ss_pred CEEEEecCcCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHhC--------------------------
Confidence 379999999999999999987 3678999999999999999762
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|....+ .+++||+|++..+++++++...++++++++|+|||++++.+...
T Consensus 78 --------------------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 78 --------------------PNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp --------------------TTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred --------------------CCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 35677788887777 67889999999999999999999999999999999999987643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=118.87 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=86.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++..
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~------------------------- 88 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLA-------------GRTVYGIEPSREMRMIAKEKLP------------------------- 88 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHSC-------------------------
T ss_pred CeEEEeCCCCCHHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHhCC-------------------------
Confidence 47999999999999999873 5789999999999999998753
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHH--HHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+++.. ++||+|++..+++++++... ++++++++|||||.+++.+..
T Consensus 89 --------------------~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 89 --------------------KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp --------------------TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --------------------CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 1466777788777766 88999999999999988776 999999999999999998755
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 148 ~~ 149 (220)
T 3hnr_A 148 FA 149 (220)
T ss_dssp BS
T ss_pred cc
Confidence 43
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=129.90 Aligned_cols=117 Identities=17% Similarity=0.073 Sum_probs=94.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ++.+++|+|+|+.+++.+++++....... .+
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------~g-------- 137 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVG----------EHGKVIGVDMLDNQLEVARKYVEYHAEKF---------FG-------- 137 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHT----------TTCEEEEEECCHHHHHHHHHTHHHHHHHH---------HS--------
T ss_pred CEEEEecCccCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhhhhc---------cc--------
Confidence 3799999999999999999874 36799999999999999999876431000 00
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC------CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.....++.+...|...+ ++.+++||+|++..+++++++...++++++++|||||+|++
T Consensus 138 ----------------~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i 201 (383)
T 4fsd_A 138 ----------------SPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201 (383)
T ss_dssp ----------------STTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------ccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEE
Confidence 00013677888887776 77788999999999999999999999999999999999999
Q ss_pred Eeeccc
Q psy889 155 LEFSHV 160 (167)
Q Consensus 155 ~~~~~~ 160 (167)
.++...
T Consensus 202 ~~~~~~ 207 (383)
T 4fsd_A 202 SDVYAD 207 (383)
T ss_dssp EEEEES
T ss_pred EEeccc
Confidence 876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-17 Score=121.67 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++ .+.+++|+|+|+.+++.++++....+.
T Consensus 69 ~vLDiGcG~G~~~~~l~~-------------~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------------- 113 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMAS-------------PERFVVGLDISESALAKANETYGSSPK---------------------- 113 (235)
T ss_dssp EEEEETCTTCHHHHHHCB-------------TTEEEEEECSCHHHHHHHHHHHTTSGG----------------------
T ss_pred CEEEeCCCCCHHHHHHHh-------------CCCeEEEEECCHHHHHHHHHHhhccCC----------------------
Confidence 799999999999998876 367899999999999999998865322
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|..+.+ ...+||+|++..++++++ +...++++++++|||||++++.++..
T Consensus 114 ------------------~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 114 ------------------AEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp ------------------GGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ------------------CcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 146788888887765 345899999999999887 78999999999999999999988765
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
.
T Consensus 175 ~ 175 (235)
T 3lcc_A 175 T 175 (235)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=119.00 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=87.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++ .+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~----~~~--------------------- 89 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGL-------------ADRVTALDGSAEMIAEAGR----HGL--------------------- 89 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHGG----GCC---------------------
T ss_pred CeEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHh----cCC---------------------
Confidence 37999999999999999884 4689999999999999986 222
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+. ..+++||+|++..+++++++. ..++++++++|+|||.+++.+++
T Consensus 90 --------------------~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 90 --------------------DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp --------------------TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4678888888777 667899999999999998874 89999999999999999999987
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 149 ~~~ 151 (218)
T 3ou2_A 149 DHE 151 (218)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=122.77 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=84.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ .+.+++|+|+|+.+++.|+++...... ..+...
T Consensus 70 ~~vLD~GCG~G~~~~~La~-------------~G~~V~gvD~S~~~i~~a~~~~~~~~~-----------~~~~~~---- 121 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFAD-------------RGHTVVGVEISEIGIREFFAEQNLSYT-----------EEPLAE---- 121 (252)
T ss_dssp CEEEETTCTTCTHHHHHHH-------------TTCEEEEECSCHHHHHHHHHHTTCCEE-----------EEECTT----
T ss_pred CeEEEeCCCCcHHHHHHHH-------------CCCeEEEEECCHHHHHHHHHhcccccc-----------cccccc----
Confidence 3799999999999999987 367899999999999999876531000 000000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-cchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+.+..+. ....++.+.++|+..++... ++||+|++..++++++ +..+++++++++|||||+|+++.+
T Consensus 122 ~~~~~~~~---------~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 122 IAGAKVFK---------SSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL 192 (252)
T ss_dssp STTCEEEE---------ETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccc---------cCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 00000000 00146888889988877653 7899999887777765 356789999999999999986655
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 193 ~ 193 (252)
T 2gb4_A 193 S 193 (252)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-17 Score=126.21 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=85.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCC--CCCcccccccc-cccC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV--PNPRLRFLEAN-AEEL 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~d-~~~l 77 (167)
.+|||+|||+|.++..++..+. ..+++|+|+|+.+++.|++++........ +.....+..+. .++-
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~-----------~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWG-----------PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEG 116 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTC-----------CSEEEEEESCHHHHHHHHHTC--------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 4799999999999999999873 67999999999999999988754331000 00000000000 0000
Q ss_pred CCCCCCCceeeeeeccccc--------------cCCCCceEEeecccCCCC-----CCccchhhHhhhhcccccc-----
Q psy889 78 PIESDSYSAYTIAFGIRNI--------------DIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGIRNVT----- 133 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~~~~--------------~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~~~----- 133 (167)
.......+.+..+...... .....++.+...|..... ...++||+|+|..+++|+.
T Consensus 117 ~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~ 196 (292)
T 3g07_A 117 TTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGD 196 (292)
T ss_dssp -------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHH
T ss_pred cccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCH
Confidence 0000000000000000000 001146888888876543 4678899999999887664
Q ss_pred -cHHHHHHHHHHhcCCCcEEEEE
Q psy889 134 -RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 134 -~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+..++|++++++|+|||+|++.
T Consensus 197 ~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 197 EGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEe
Confidence 7889999999999999999984
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=122.61 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=91.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++....+.
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 138 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERF------------DVNVIGLTLSKNQHARCEQVLASIDT--------------------- 138 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTSCC---------------------
T ss_pred CEEEEEcccchHHHHHHHHHC------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 479999999999999999876 56899999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+++ ++||+|++..+++++ ++...++++++++|||||.+++.++.
T Consensus 139 -------------------~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 139 -------------------NRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp -------------------SSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -------------------CCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 135778788876664 679999999999988 67899999999999999999998887
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 197 ~~~ 199 (318)
T 2fk8_A 197 SYH 199 (318)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=114.21 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=86.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. .+++++|+++.+++.++++ .
T Consensus 20 ~vLDiG~G~G~~~~~l~~~~-------------~~v~~vD~s~~~~~~a~~~-----~---------------------- 59 (170)
T 3i9f_A 20 VIVDYGCGNGFYCKYLLEFA-------------TKLYCIDINVIALKEVKEK-----F---------------------- 59 (170)
T ss_dssp EEEEETCTTCTTHHHHHTTE-------------EEEEEECSCHHHHHHHHHH-----C----------------------
T ss_pred eEEEECCCCCHHHHHHHhhc-------------CeEEEEeCCHHHHHHHHHh-----C----------------------
Confidence 79999999999999998854 3899999999999999987 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.++.+...| .++.+++||+|++..+++++++...++++++++|||||++++.++....
T Consensus 60 -------------------~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 60 -------------------DSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp -------------------TTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred -------------------CCcEEEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 456777777 5566788999999999999999999999999999999999999887654
Q ss_pred C
Q psy889 162 N 162 (167)
Q Consensus 162 ~ 162 (167)
.
T Consensus 118 ~ 118 (170)
T 3i9f_A 118 T 118 (170)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-17 Score=126.11 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=82.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc--EEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccccccccCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH--VTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~l~ 78 (167)
+|||+|||+|.++..++..+...- +..+ ++++|+|+.|++.++++.... +. +
T Consensus 55 ~VLDiG~GtG~~~~~~l~~l~~~~-------~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~---~--------------- 109 (292)
T 2aot_A 55 KILSIGGGAGEIDLQILSKVQAQY-------PGVCINNEVVEPSAEQIAKYKELVAKTSNL---E--------------- 109 (292)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHS-------TTCEEEEEEECSCHHHHHHHHHHHHTCSSC---T---------------
T ss_pred eEEEEcCCCCHHHHHHHHHHHhhC-------CCceeeEEEEeCCHHHHHHHHHHHHhccCC---C---------------
Confidence 799999999998876655431000 1343 499999999999999987543 11 0
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCC------CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
+.++.+...+.++++ +.+++||+|++..+++++++..+++++++++|||||++
T Consensus 110 ---------------------~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l 168 (292)
T 2aot_A 110 ---------------------NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM 168 (292)
T ss_dssp ---------------------TEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred ---------------------cceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEE
Confidence 012333444443332 45678999999999999999999999999999999999
Q ss_pred EEEeecc
Q psy889 153 LCLEFSH 159 (167)
Q Consensus 153 ~~~~~~~ 159 (167)
++...+.
T Consensus 169 ~i~~~~~ 175 (292)
T 2aot_A 169 LIIVVSG 175 (292)
T ss_dssp EEEEECT
T ss_pred EEEEecC
Confidence 9986553
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=118.84 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=85.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....
T Consensus 54 ~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~------------------------ 96 (216)
T 3ofk_A 54 NGLEIGCAAGAFTEKLAPH-------------CKRLTVIDVMPRAIGRACQRTKRW------------------------ 96 (216)
T ss_dssp EEEEECCTTSHHHHHHGGG-------------EEEEEEEESCHHHHHHHHHHTTTC------------------------
T ss_pred cEEEEcCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhcccC------------------------
Confidence 7999999999999999874 457999999999999999886532
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH---HHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+.+ .+++||+|++..+++++++. ..++++++++|||||.+++.+..
T Consensus 97 -------------------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 97 -------------------SHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp -------------------SSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -------------------CCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 35788888887776 56889999999999998875 57799999999999999997644
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=125.87 Aligned_cols=111 Identities=10% Similarity=0.135 Sum_probs=78.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++|+|+|+.|++.|+++....... .+
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~------------~~~v~GiD~S~~~l~~A~~~~~~~~~~----~~-------------- 99 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGE------------IALLVATDPDADAIARGNERYNKLNSG----IK-------------- 99 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHHCC---------------------
T ss_pred CeEEEEecCCcHhHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHhcccc----cc--------------
Confidence 379999999998776665522 568999999999999999988654320 00
Q ss_pred CCCCceeeeeeccccccCCCCceEEeeccc------CCC--CCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANA------EEL--PIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPG 149 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~------~~~--~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~Lkpg 149 (167)
... -++.|...+. +.+ +..+++||+|+|..++|+. .+..+++++++++||||
T Consensus 100 ~~~-----------------~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 100 TKY-----------------YKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp -CC-----------------CEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred ccc-----------------cccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 000 0133444443 111 2345789999998888754 45689999999999999
Q ss_pred cEEEEEeec
Q psy889 150 GRFLCLEFS 158 (167)
Q Consensus 150 G~l~~~~~~ 158 (167)
|+|++...+
T Consensus 163 G~~i~~~~~ 171 (302)
T 2vdw_A 163 GKVLITTMD 171 (302)
T ss_dssp EEEEEEEEC
T ss_pred CEEEEEeCC
Confidence 999997764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=120.73 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=88.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....
T Consensus 95 ~~vLDiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~----------------------- 139 (254)
T 1xtp_A 95 SRALDCGAGIGRITKNLLTKL------------YATTDLLEPVKHMLEEAKRELAGM----------------------- 139 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHH------------CSEEEEEESCHHHHHHHHHHTTTS-----------------------
T ss_pred CEEEEECCCcCHHHHHHHHhh------------cCEEEEEeCCHHHHHHHHHHhccC-----------------------
Confidence 379999999999999998865 457999999999999999876432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....++.+++||+|++..+++++ .+...++++++++|||||++++.+..
T Consensus 140 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 140 --------------------PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp --------------------SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --------------------CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 24677788887777777899999999999998 45889999999999999999998854
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=122.30 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=85.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.++++.
T Consensus 59 ~~vLDiGcG~G~~~~~l~~-------------~~~~v~gvD~s~~~~~~a~~~~-------------------------- 99 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQ-------------SGAEVLGTDNAATMIEKARQNY-------------------------- 99 (279)
T ss_dssp CEEEEETCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CEEEEecCCCCHHHHHHHh-------------CCCeEEEEECCHHHHHHHHhhC--------------------------
Confidence 4799999999999999987 2678999999999999998764
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|.+.++. +++||+|++..+++++++...++++++++|||||++++...+.
T Consensus 100 --------------------~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 100 --------------------PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp --------------------TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred --------------------CCCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 235666777777765 5789999999999999999999999999999999999977654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=116.63 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=87.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~---------------------- 84 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDY-------------GFEVVGVDISEDMIRKAREYAKSRE---------------------- 84 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTT----------------------
T ss_pred CeEEEEeccCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcC----------------------
Confidence 47999999999999988874 3489999999999999999876433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+.+..+++||+|++..+ +++..+...++++++++|+|||.+++.+..
T Consensus 85 --------------------~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 85 --------------------SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp --------------------CCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3577788888777766788999999888 566678889999999999999999998765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=114.78 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=77.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.
T Consensus 24 ~~vLDiGcG~G~~~~~la~~-------------~~~v~~vD~s~~~l~~a~~~~~~~~~--------------------- 69 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL-------------SKKVYAFDVQEQALGKTSQRLSDLGI--------------------- 69 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999999873 57899999999999999999976654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhc-cc--------ccccHHHHHHHHHHhcCCCc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFG-IR--------NVTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~-~~--------~~~~~~~~l~~~~~~LkpgG 150 (167)
.++.+...+...+. ..+++||+|+++.. +. .......++++++++|||||
T Consensus 70 --------------------~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 129 (185)
T 3mti_A 70 --------------------ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGG 129 (185)
T ss_dssp --------------------CCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEE
T ss_pred --------------------CcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCc
Confidence 34566555544432 23566888866521 11 12345678899999999999
Q ss_pred EEEEEeec
Q psy889 151 RFLCLEFS 158 (167)
Q Consensus 151 ~l~~~~~~ 158 (167)
++++..+.
T Consensus 130 ~l~i~~~~ 137 (185)
T 3mti_A 130 RLAIMIYY 137 (185)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99998765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=125.38 Aligned_cols=110 Identities=12% Similarity=-0.015 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++.... ++.+++++|+|+.+++.++++....+.
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 168 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSAC----------PGVQLVGIDYDPEALDGATRLAAGHAL--------------------- 168 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTC----------TTCEEEEEESCHHHHHHHHHHHTTSTT---------------------
T ss_pred CEEEEecCCCCHHHHHHHHhcC----------CCCeEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999988853221 378999999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHH---HHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK---ALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..++++. ++||+|++..+++++++... ++++++++|||||++++.++
T Consensus 169 -------------------~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 169 -------------------AGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp -------------------GGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred -------------------CCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 13588888888888776 89999999999998877654 79999999999999999887
Q ss_pred cccC
Q psy889 158 SHVN 161 (167)
Q Consensus 158 ~~~~ 161 (167)
..+.
T Consensus 229 ~~~~ 232 (305)
T 3ocj_A 229 TPPP 232 (305)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 6543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=124.39 Aligned_cols=107 Identities=19% Similarity=0.126 Sum_probs=86.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++. +.+++|+|+|+.+++.++++........
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~------------------- 106 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEE-------------GFSVTSVDASDKMLKYALKERWNRRKEP------------------- 106 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTTSH-------------------
T ss_pred CEEEEecCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHhhhhccccc-------------------
Confidence 47999999999999999883 5689999999999999998864322100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhh-hccccccc-------HHHHHHHHHHhcCCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIA-FGIRNVTR-------IDKALSEAYRVLKPG 149 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~-~~~~~~~~-------~~~~l~~~~~~Lkpg 149 (167)
...++.+...+...++ +.+++||+|+|. .+++++++ ...++++++++||||
T Consensus 107 ------------------~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 107 ------------------AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp ------------------HHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred ------------------ccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 0024566677776665 667889999998 89999988 899999999999999
Q ss_pred cEEEEEee
Q psy889 150 GRFLCLEF 157 (167)
Q Consensus 150 G~l~~~~~ 157 (167)
|++++...
T Consensus 169 G~l~~~~~ 176 (293)
T 3thr_A 169 GLLVIDHR 176 (293)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEeC
Confidence 99998654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=114.03 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=85.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~----------------------- 75 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL-------------GYEVTAVDQSSVGLAKAKQLAQEKG----------------------- 75 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT-------------TCEEEEECSSHHHHHHHHHHHHHHT-----------------------
T ss_pred CEEEECCCCCHhHHHHHhC-------------CCeEEEEECCHHHHHHHHHHHHhcC-----------------------
Confidence 6999999999999988873 5689999999999999999886543
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....+..+++||+|++........+...++++++++|+|||++++.++...
T Consensus 76 -------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 76 -------------------VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp -------------------CCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred -------------------CceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 256777788877777778899999854322345678999999999999999999887644
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=122.30 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=87.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.++++
T Consensus 36 ~~vLDiGcG~G~~~~~l~~-------------~~~~v~gvD~s~~~~~~a~~~--------------------------- 75 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALAN-------------QGLFVYAVEPSIVMRQQAVVH--------------------------- 75 (261)
T ss_dssp CEEEEETCTTSHHHHHHHT-------------TTCEEEEECSCHHHHHSSCCC---------------------------
T ss_pred CEEEEEcCcccHHHHHHHh-------------CCCEEEEEeCCHHHHHHHHhc---------------------------
Confidence 4799999999999999987 368999999999998877642
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|.+++++.+++||+|++..+++++++...++++++++|| ||++++.++...
T Consensus 76 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 76 --------------------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp --------------------TTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred --------------------cCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 24778888888888888899999999999999999999999999999 999999888654
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 135 ~ 135 (261)
T 3ege_A 135 L 135 (261)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=118.43 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=86.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++...
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~------------------------ 88 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHG------------ASYVLGLDLSEKMLARARAAGPD------------------------ 88 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHTSCS------------------------
T ss_pred CEEEEEcCcCCHHHHHHHHCC------------CCeEEEEcCCHHHHHHHHHhccc------------------------
Confidence 479999999999999988742 23899999999999999876431
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....+..+++||+|++..+++++++...++++++++|+|||++++.+..
T Consensus 89 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 89 --------------------TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp --------------------SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------CCceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 2467777888777777788999999999999999999999999999999999997643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=120.41 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=83.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++.+. .+++++++|+|+++++.|+++++..+.
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~-----------~ga~V~gIDis~~~l~~Ar~~~~~~gl--------------------- 171 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHV-----------YGMRVNVVEIEPDIAELSRKVIEGLGV--------------------- 171 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHT-----------TCCEEEEEESSHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEECCCccHHHHHHHHHc-----------cCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 489999999998886665554 378999999999999999999887664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+..+|..+++ +++||+|++... .++..+++++++++|||||++++.+.
T Consensus 172 --------------------~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 172 --------------------DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --------------------CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --------------------CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 56888888887765 678999987543 57889999999999999999999663
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=118.75 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=87.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+.
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~-------------g~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 167 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLL-------------GYDVTSWDHNENSIAFLNETKEKENL--------------------- 167 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CcEEEECCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999999883 56899999999999999998875442
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++.+...|....+. .++||+|++..++++++ ....++++++++|+|||.+++....
T Consensus 168 ---------------------~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 168 ---------------------NISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp ---------------------CEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ---------------------ceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 57778888877665 68899999999998774 4679999999999999998876654
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 226 ~~ 227 (286)
T 3m70_A 226 ST 227 (286)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-16 Score=119.54 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=88.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.++++....+.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 112 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAG------------IGEYYGVDIAEVSINDARVRARNMKR--------------------- 112 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHT------------CSEEEEEESCHHHHHHHHHHHHTSCC---------------------
T ss_pred CeEEEECCCCCHHHHHHHHCC------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 479999999999999987642 45899999999999999998875443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCC-CccchhhHhhhhcccc----cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN----VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|....++ .+++||+|++..++++ ..+...++++++++|+|||++++.
T Consensus 113 -------------------~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 113 -------------------RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp -------------------SSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------CccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1357788888877776 5788999999888865 567789999999999999999997
Q ss_pred eec
Q psy889 156 EFS 158 (167)
Q Consensus 156 ~~~ 158 (167)
..+
T Consensus 174 ~~~ 176 (298)
T 1ri5_A 174 VPS 176 (298)
T ss_dssp EEC
T ss_pred ECC
Confidence 755
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-16 Score=119.78 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=84.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~-------------------------- 92 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADS-------------FGTVEGLELSADMLAIARRRN-------------------------- 92 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTT-------------SSEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CcEEEeCCcCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhC--------------------------
Confidence 47999999999999998873 568999999999999999864
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-cccccc---cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNVT---RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|+...+. +++||+|++.. ++++++ +...++++++++|||||.+++.+
T Consensus 93 --------------------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 93 --------------------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp --------------------TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred --------------------CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 246777788877766 68899999987 888884 67788999999999999999976
Q ss_pred ecccC
Q psy889 157 FSHVN 161 (167)
Q Consensus 157 ~~~~~ 161 (167)
+..++
T Consensus 152 ~~~~~ 156 (263)
T 3pfg_A 152 WWFPE 156 (263)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 54443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=115.19 Aligned_cols=105 Identities=23% Similarity=0.306 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++... .
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~------------~~~v~~~D~s~~~~~~a~~~~~~--~--------------------- 88 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGG------------FPNVTSVDYSSVVVAAMQACYAH--V--------------------- 88 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTT------------CCCEEEEESCHHHHHHHHHHTTT--C---------------------
T ss_pred CeEEEECCCCcHHHHHHHHcC------------CCcEEEEeCCHHHHHHHHHhccc--C---------------------
Confidence 479999999999999998853 23899999999999999987642 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---------------ccHHHHHHHHHHh
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---------------TRIDKALSEAYRV 145 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---------------~~~~~~l~~~~~~ 145 (167)
.++.+...|...+++.+++||+|++..+++++ .+...++++++++
T Consensus 89 --------------------~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (215)
T 2pxx_A 89 --------------------PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV 148 (215)
T ss_dssp --------------------TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHh
Confidence 34666666766666666778888876555433 3668999999999
Q ss_pred cCCCcEEEEEeeccc
Q psy889 146 LKPGGRFLCLEFSHV 160 (167)
Q Consensus 146 LkpgG~l~~~~~~~~ 160 (167)
|+|||.+++.+++.+
T Consensus 149 LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 149 LVPGGRFISMTSAAP 163 (215)
T ss_dssp EEEEEEEEEEESCCH
T ss_pred CcCCCEEEEEeCCCc
Confidence 999999999988764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=121.63 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=80.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++....+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~---------------------- 107 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQT---------------------- 107 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSC------------EEEEEEEECCHHHHHHHHHHGGGCS----------------------
T ss_pred CeEEEEeccCCHHHHHHHhcC------------CCeEEEEcCCHHHHHHHHHHHHhcC----------------------
Confidence 379999999999999986532 3489999999999999999875433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhh-hhccc----ccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTI-AFGIR----NVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~-~~~~~----~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.+...|..++ ++.+++||+|++ .+.+. +......++++++++|||||+|+
T Consensus 108 --------------------~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 108 --------------------HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp --------------------SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred --------------------CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 3567777777666 666778898887 44321 22334578999999999999999
Q ss_pred EEeec
Q psy889 154 CLEFS 158 (167)
Q Consensus 154 ~~~~~ 158 (167)
+.++.
T Consensus 168 ~~~~~ 172 (236)
T 1zx0_A 168 YCNLT 172 (236)
T ss_dssp ECCHH
T ss_pred EEecC
Confidence 87755
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=114.94 Aligned_cols=98 Identities=28% Similarity=0.374 Sum_probs=84.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+ . ..+++++|+|+.+++.++++.
T Consensus 38 ~~vLdiG~G~G~~~~~l----~-----------~~~v~~vD~s~~~~~~a~~~~-------------------------- 76 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL----P-----------YPQKVGVEPSEAMLAVGRRRA-------------------------- 76 (211)
T ss_dssp SEEEEETCTTCHHHHHC----C-----------CSEEEEECCCHHHHHHHHHHC--------------------------
T ss_pred CeEEEECCCCCHhHHhC----C-----------CCeEEEEeCCHHHHHHHHHhC--------------------------
Confidence 47999999999987766 2 337999999999999999775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|...+++.+++||+|++..+++++++...++++++++|||||.+++.+.+.
T Consensus 77 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 77 --------------------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp --------------------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred --------------------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 13566777777777777899999999999999999999999999999999999987654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-16 Score=117.85 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~--------------------------- 82 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEE-------------GIESIGVDINEDMIKFCEGK--------------------------- 82 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHH-------------TCCEEEECSCHHHHHHHHTT---------------------------
T ss_pred CeEEEEeCCCCHHHHHHHhC-------------CCcEEEEECCHHHHHHHHhh---------------------------
Confidence 47999999999999988874 46799999999999998854
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+.+...|..+. ++.+++||+|++..++++++ +...++++++++|||||++++..
T Consensus 83 ----------------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 83 ----------------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp ----------------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred ----------------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 33445555443 56678899999999999998 56999999999999999999977
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
.+.
T Consensus 141 ~~~ 143 (240)
T 3dli_A 141 PNP 143 (240)
T ss_dssp ECT
T ss_pred CCc
Confidence 653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=111.14 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=84.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++....+.
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 89 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLM-----------PNGRIFALERNPQYLGFIRDNLKKFVA--------------------- 89 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-----------TTSEEEEEECCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHhCC---------------------
Confidence 479999999999999999876 368899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+.......||+|++...+. +...++++++++|+|||++++....
T Consensus 90 --------------------~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 90 --------------------RNVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp --------------------TTEEEEECCTTTTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred --------------------CcEEEEeCChhhhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 467777777755433336799998876543 7889999999999999999997654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-16 Score=114.51 Aligned_cols=97 Identities=23% Similarity=0.154 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~------------------------- 86 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAA-------------GFDVDATDGSPELAAEASRRLG------------------------- 86 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHT-------------------------
T ss_pred CcEEEECCCCCHHHHHHHHc-------------CCeEEEECCCHHHHHHHHHhcC-------------------------
Confidence 47999999999999999873 5689999999999999998761
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+...+...++ .+++||+|++..++++++ +...++++++++|||||++++....
T Consensus 87 ----------------------~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 87 ----------------------RPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp ----------------------SCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ----------------------CceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 233445555555 568899999999999887 7889999999999999999997544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=115.89 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~-------------~~~~~~~D~s~~~~~~a~~~~~~~~---------------------- 83 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPK-------------FKNTWAVDLSQEMLSEAENKFRSQG---------------------- 83 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGG-------------SSEEEEECSCHHHHHHHHHHHHHTT----------------------
T ss_pred CeEEEeCCCCCHHHHHHHHC-------------CCcEEEEECCHHHHHHHHHHHhhcC----------------------
Confidence 47999999999999998873 4679999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-ccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|....+.. ++||+|++.. +++++ .+...++++++++|+|||.+++..
T Consensus 84 --------------------~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 84 --------------------LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp --------------------CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --------------------CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2467777777776655 7899999998 99888 678899999999999999999844
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-16 Score=117.44 Aligned_cols=104 Identities=9% Similarity=0.119 Sum_probs=86.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++.. .
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~-------------~~v~gvD~s~~~~~~a~~~~~---~--------------------- 100 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFF-------------PRVIGLDVSKSALEIAAKENT---A--------------------- 100 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHS-------------SCEEEEESCHHHHHHHHHHSC---C---------------------
T ss_pred CeEEEEcCCCCHHHHHHHHhC-------------CCEEEEECCHHHHHHHHHhCc---c---------------------
Confidence 479999999999999998854 379999999999999998762 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-----cchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.+...|..+.+... ..||+|++..++++++ +...++++++++|||||+++
T Consensus 101 --------------------~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 101 --------------------ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160 (245)
T ss_dssp --------------------TTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred --------------------cCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 35777777776654321 2389999999999888 78999999999999999999
Q ss_pred EEeecccC
Q psy889 154 CLEFSHVN 161 (167)
Q Consensus 154 ~~~~~~~~ 161 (167)
+.++...+
T Consensus 161 i~~~~~~~ 168 (245)
T 3ggd_A 161 LIELGTGC 168 (245)
T ss_dssp EEEECTTH
T ss_pred EEeCCccc
Confidence 99987654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=111.92 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=77.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ++.+++|+|+++.+++.+++++...+.
T Consensus 44 ~vLDiGcG~G~~~~~la~~~-----------p~~~v~gvD~s~~~l~~a~~~~~~~~~---------------------- 90 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQN-----------PDINYIGIDIQKSVLSYALDKVLEVGV---------------------- 90 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHC-----------TTSEEEEEESCHHHHHHHHHHHHHHCC----------------------
T ss_pred eEEEEccCcCHHHHHHHHHC-----------CCCCEEEEEcCHHHHHHHHHHHHHcCC----------------------
Confidence 79999999999999999876 367899999999999999999876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccc--------cHHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...|...++ +.+++||+|+++....+.. ....+++++.++|+|||.
T Consensus 91 -------------------~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 151 (214)
T 1yzh_A 91 -------------------PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE 151 (214)
T ss_dssp -------------------SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred -------------------CCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcE
Confidence 34555555555543 4445666666654322221 235789999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
+++..
T Consensus 152 l~~~~ 156 (214)
T 1yzh_A 152 IHFKT 156 (214)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99854
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=116.10 Aligned_cols=112 Identities=16% Similarity=0.046 Sum_probs=90.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH------HHHHHHHHHHhcccCCCCCCccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA------MLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 74 (167)
.+|||+|||+|.++..+++... +..+++++|+|+. +++.+++++...+.
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g----------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~--------------- 99 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVG----------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL--------------- 99 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC----------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT---------------
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEECCccccccHHHHHHHHHHHHhcCC---------------
Confidence 4899999999999999998763 2478999999997 99999998875443
Q ss_pred ccCCCCCCCCceeeeeeccccccCCCCceEEeecc---cCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcE
Q psy889 75 EELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEAN---AEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 75 ~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
..++.+...| ...+++.+++||+|++..+++++++...+++.+.++++|||+
T Consensus 100 -------------------------~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~ 154 (275)
T 3bkx_A 100 -------------------------GDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDH 154 (275)
T ss_dssp -------------------------GGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSE
T ss_pred -------------------------CCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCE
Confidence 1357777776 344556678899999999999999888877777777777999
Q ss_pred EEEEeecccCC
Q psy889 152 FLCLEFSHVNN 162 (167)
Q Consensus 152 l~~~~~~~~~~ 162 (167)
+++.++..+..
T Consensus 155 l~~~~~~~~~~ 165 (275)
T 3bkx_A 155 VDVAEWSMQPT 165 (275)
T ss_dssp EEEEEECSSCS
T ss_pred EEEEEecCCCC
Confidence 99998876543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=118.81 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=89.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 217 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAH-----------EDLSGTVLDL-QGPASAAHRRFLDTGL--------------------- 217 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCChhHHHHHHHHHC-----------CCCeEEEecC-HHHHHHHHHhhhhcCc---------------------
Confidence 479999999999999999987 3778999999 9999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+. .+.+. .||+|++.+++|++++ ..+++++++++|+|||++++.+..
T Consensus 218 -------------------~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 218 -------------------SGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp -------------------TTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred -------------------CcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 156888888875 23333 7999999999998887 489999999999999999999876
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 277 ~~~ 279 (332)
T 3i53_A 277 AGD 279 (332)
T ss_dssp CC-
T ss_pred CCC
Confidence 554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=113.60 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=73.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|++++...+.
T Consensus 41 ~vLDiGcG~G~~~~~la~~~-----------p~~~v~giD~s~~~l~~a~~~~~~~~~---------------------- 87 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQN-----------PDINYIGIELFKSVIVTAVQKVKDSEA---------------------- 87 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHC-----------TTSEEEEECSCHHHHHHHHHHHHHSCC----------------------
T ss_pred eEEEEecCCCHHHHHHHHHC-----------CCCCEEEEEechHHHHHHHHHHHHcCC----------------------
Confidence 79999999999999999876 378899999999999999999876554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccc--------cHHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...|...++ +.+++||.|++.....+.. ....++++++++|+|||.
T Consensus 88 -------------------~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~ 148 (213)
T 2fca_A 88 -------------------QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGS 148 (213)
T ss_dssp -------------------SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred -------------------CCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCE
Confidence 23444444444332 3334455554432211111 136789999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
+++..
T Consensus 149 l~~~t 153 (213)
T 2fca_A 149 IHFKT 153 (213)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99865
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=120.44 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=90.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 182 ~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------------- 227 (363)
T 3dp7_A 182 RLLDIGGNTGKWATQCVQYN-----------KEVEVTIVDL-PQQLEMMRKQTAGLSG---------------------- 227 (363)
T ss_dssp EEEEESCTTCHHHHHHHHHS-----------TTCEEEEEEC-HHHHHHHHHHHTTCTT----------------------
T ss_pred EEEEeCCCcCHHHHHHHHhC-----------CCCEEEEEeC-HHHHHHHHHHHHhcCc----------------------
Confidence 79999999999999999987 3789999999 9999999998865443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|+... +++ +.||+|++..++|++++. .+++++++++|+|||++++.+.
T Consensus 228 ------------------~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 228 ------------------SERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ------------------GGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ------------------ccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 14688888888764 344 679999999999977654 6889999999999999999887
Q ss_pred cccCC
Q psy889 158 SHVNN 162 (167)
Q Consensus 158 ~~~~~ 162 (167)
..++.
T Consensus 289 ~~~~~ 293 (363)
T 3dp7_A 289 LWDRQ 293 (363)
T ss_dssp CTTSC
T ss_pred ccCCc
Confidence 65553
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=118.69 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ...+++++|+|+.+++.++++.........
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~------------------ 85 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKG------------RINKLVCTDIADVSVKQCQQRYEDMKNRRD------------------ 85 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHHHSSSC------------------
T ss_pred CEEEEECCCCcHHHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhhhccc------------------
Confidence 37999999999999998873 267899999999999999998865321000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC----CC--ccchhhHhhhhccccc----ccHHHHHHHHHHhcCCCc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP----IE--SDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~LkpgG 150 (167)
.....++.+...|....+ +. .++||+|++..++++. ++...++++++++|||||
T Consensus 86 ----------------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 86 ----------------SEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGG 149 (313)
T ss_dssp ----------------C-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred ----------------ccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCc
Confidence 000135677777777654 32 4589999999999887 446799999999999999
Q ss_pred EEEEEeecc
Q psy889 151 RFLCLEFSH 159 (167)
Q Consensus 151 ~l~~~~~~~ 159 (167)
.+++...+.
T Consensus 150 ~li~~~~~~ 158 (313)
T 3bgv_A 150 YFIGTTPNS 158 (313)
T ss_dssp EEEEEEECH
T ss_pred EEEEecCCh
Confidence 999987643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=110.25 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=84.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+.
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 92 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRG------------AASVLFVESDQRSAAVIARNIEALGL--------------------- 92 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEECCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEeCCCcCHHHHHHHHCC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999877632 45799999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhccccc-ccHHHHHHHHHH--hcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-TRIDKALSEAYR--VLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~--~LkpgG~l~~~ 155 (167)
.++.+...|..+.. ....+||+|++...+++. .+...++.++.+ +|+|||.+++.
T Consensus 93 --------------------~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 93 --------------------SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp --------------------SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred --------------------CceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 45777777766542 335789999997766654 678899999999 99999999996
Q ss_pred eec
Q psy889 156 EFS 158 (167)
Q Consensus 156 ~~~ 158 (167)
...
T Consensus 153 ~~~ 155 (189)
T 3p9n_A 153 RAT 155 (189)
T ss_dssp EET
T ss_pred ecC
Confidence 544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=110.84 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.+++++...+. .
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~----~---------------- 73 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVG----------ENGRVFGFDIQDKAIANTTKKLTDLNL----I---------------- 73 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHC----------TTCEEEEECSCHHHHHHHHHHHHHTTC----G----------------
T ss_pred CEEEEcCCCCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHcCC----C----------------
Confidence 4799999999999999999873 256899999999999999999876543 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcc---------cccccHHHHHHHHHHhcCCCc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGI---------RNVTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~---------~~~~~~~~~l~~~~~~LkpgG 150 (167)
.++.+...|...++ ..+++||+|++...+ ....+...++++++++|||||
T Consensus 74 --------------------~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG 133 (197)
T 3eey_A 74 --------------------DRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG 133 (197)
T ss_dssp --------------------GGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEE
T ss_pred --------------------CCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCC
Confidence 24555565554443 334567777665432 112245678999999999999
Q ss_pred EEEEEeec
Q psy889 151 RFLCLEFS 158 (167)
Q Consensus 151 ~l~~~~~~ 158 (167)
++++..+.
T Consensus 134 ~l~~~~~~ 141 (197)
T 3eey_A 134 IITVVIYY 141 (197)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=117.60 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=86.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+..
T Consensus 85 ~vLDlGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~--------------------- 130 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDL-------------GWEVTALELSTSVLAAFRKRLAEAPAD--------------------- 130 (299)
T ss_dssp CEEEETCTTTTTHHHHHTT-------------TCCEEEEESCHHHHHHHHHHHHTSCHH---------------------
T ss_pred cEEEEeccCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHhhcccc---------------------
Confidence 7999999999999999873 568999999999999999988654310
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
...++.+...|..+++. +++||+|++. .++++.+ +...++++++++|||||+|++..++
T Consensus 131 -----------------~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 131 -----------------VRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp -----------------HHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------cccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 00357888888888776 6889988864 5556655 4689999999999999999998776
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 193 ~~ 194 (299)
T 3g2m_A 193 SE 194 (299)
T ss_dssp CH
T ss_pred Cc
Confidence 54
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=115.27 Aligned_cols=103 Identities=14% Similarity=-0.023 Sum_probs=78.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +...++|+|+|+.+++.+++++...+.
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~-----------p~~~v~giD~s~~~l~~a~~~~~~~~l---------------------- 83 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDR-----------PEQDFLGIEVHSPGVGACLASAHEEGL---------------------- 83 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHC-----------TTSEEEEECSCHHHHHHHHHHHHHTTC----------------------
T ss_pred eEEEEeeeChHHHHHHHHHC-----------CCCeEEEEEecHHHHHHHHHHHHHhCC----------------------
Confidence 79999999999999999876 367899999999999999999876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C--CCccchhhHhhhhcccccc--cH------HHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIAFGIRNVT--RI------DKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~~~~~~~~~--~~------~~~l~~~~~~LkpgG 150 (167)
.++.+...|...+ + +.+++||.|++.+...+.. .. ..++++++++|||||
T Consensus 84 -------------------~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG 144 (218)
T 3dxy_A 84 -------------------SNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG 144 (218)
T ss_dssp -------------------SSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEE
T ss_pred -------------------CcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCc
Confidence 3566666665542 2 4556677776653322221 11 258999999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.|++.+
T Consensus 145 ~l~i~t 150 (218)
T 3dxy_A 145 VFHMAT 150 (218)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999865
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=109.00 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+++.+++.+++++...+.
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~-----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 74 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRST-----------PQTTAVCFEISEERRERILSNAINLGV--------------------- 74 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTS-----------SSEEEEEECSCHHHHHHHHHHHHTTTC---------------------
T ss_pred CeEEEeCCCCCHHHHHHHHHC-----------CCCeEEEEeCCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998876 368899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++ +...+... ++...++||+|++...+++ ..++++++++|+|||++++.++..
T Consensus 75 -------------------~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 75 -------------------SDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp -------------------TTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred -------------------CCCE-EEecchHhhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 1255 55555533 3332378999999877765 778999999999999999977654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=115.07 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=84.0
Q ss_pred eEEeeecCC---CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC
Q psy889 2 YILFYLVFP---GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 2 ~vLD~g~G~---G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
+|||+|||+ |.++..+.+.. ++.+++++|+|+.|++.+++++...
T Consensus 80 ~vLDlGcG~pt~G~~~~~~~~~~-----------p~~~v~~vD~sp~~l~~Ar~~~~~~--------------------- 127 (274)
T 2qe6_A 80 QFLDLGSGLPTVQNTHEVAQSVN-----------PDARVVYVDIDPMVLTHGRALLAKD--------------------- 127 (274)
T ss_dssp EEEEETCCSCCSSCHHHHHHHHC-----------TTCEEEEEESSHHHHHHHHHHHTTC---------------------
T ss_pred EEEEECCCCCCCChHHHHHHHhC-----------CCCEEEEEECChHHHHHHHHhcCCC---------------------
Confidence 799999999 99887766654 3789999999999999999887421
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCC-----------CCccchhhHhhhhccccccc--HHHHHHHHHHh
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-----------IESDSYSAYTIAFGIRNVTR--IDKALSEAYRV 145 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~ 145 (167)
.++.++.+|+.+.. +...+||+|++..++|++++ ...+|++++++
T Consensus 128 ----------------------~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~ 185 (274)
T 2qe6_A 128 ----------------------PNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDA 185 (274)
T ss_dssp ----------------------TTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHH
T ss_pred ----------------------CCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHh
Confidence 34666666664421 22247899999999999887 89999999999
Q ss_pred cCCCcEEEEEeecc
Q psy889 146 LKPGGRFLCLEFSH 159 (167)
Q Consensus 146 LkpgG~l~~~~~~~ 159 (167)
|+|||+|++.++..
T Consensus 186 L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 186 LAPGSYLFMTSLVD 199 (274)
T ss_dssp SCTTCEEEEEEEBC
T ss_pred CCCCcEEEEEEecC
Confidence 99999999988875
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-16 Score=118.03 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=77.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||+|..+..++++. ..+++++|+|+.+++.|+++....+
T Consensus 63 rVLdiG~G~G~~~~~~~~~~------------~~~v~~id~~~~~~~~a~~~~~~~~----------------------- 107 (236)
T 3orh_A 63 RVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQT----------------------- 107 (236)
T ss_dssp EEEEECCTTSHHHHHHTTSC------------EEEEEEEECCHHHHHHHHHHGGGCS-----------------------
T ss_pred eEEEECCCccHHHHHHHHhC------------CcEEEEEeCCHHHHHHHHHHHhhCC-----------------------
Confidence 89999999999999887753 4679999999999999999876543
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHh-----hhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYT-----IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~-----~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+...+...+ .+.+++||.|+ +....++..+...++++++|+|||||+|++
T Consensus 108 -------------------~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 108 -------------------HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp -------------------SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred -------------------CceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 2455555554332 34455566664 455666788899999999999999999987
Q ss_pred Ee
Q psy889 155 LE 156 (167)
Q Consensus 155 ~~ 156 (167)
.+
T Consensus 169 ~~ 170 (236)
T 3orh_A 169 CN 170 (236)
T ss_dssp CC
T ss_pred Ee
Confidence 54
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=113.02 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++.
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~-------------~~v~~~D~s~~~~~~a~~~~-------------------------- 82 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEF-------------GDTAGLELSEDMLTHARKRL-------------------------- 82 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHH-------------SEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CeEEEecccCCHHHHHHHHhC-------------CcEEEEeCCHHHHHHHHHhC--------------------------
Confidence 479999999999999998865 37999999999999998764
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|....+. ..+||+|+|. .+++++ .+...++++++++|+|||.+++.+
T Consensus 83 --------------------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 83 --------------------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp --------------------TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred --------------------CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 245667777777665 6789999964 477777 456899999999999999999977
Q ss_pred ecccC
Q psy889 157 FSHVN 161 (167)
Q Consensus 157 ~~~~~ 161 (167)
+..++
T Consensus 142 ~~~~~ 146 (239)
T 3bxo_A 142 WWFPE 146 (239)
T ss_dssp CCCTT
T ss_pred ccCcc
Confidence 66544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-16 Score=118.94 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=80.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++... ..+++|+|+|+.|++.++++++.....--.++.+.+++ +.+.-
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~------------~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~-~~~~~--- 120 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDS------------FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC-ELEGN--- 120 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGT------------EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH-HHTTC---
T ss_pred ceEEEeCCCccHHHHHHHHhh------------hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHH-hcCCC---
Confidence 379999999998876655421 24699999999999999988754211000000000000 00000
Q ss_pred CCCCceeeeeeccccccCCCCceE-EeecccCCC-CC---CccchhhHhhhhccccc----ccHHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLR-FLEANAEEL-PI---ESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~-~~~~d~~~~-~~---~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~LkpgG~ 151 (167)
. . ..+.... ....++. +...|.... +. ..++||+|+++.+++++ ++...++++++++|||||+
T Consensus 121 ~---~--~~~~~~~---~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~ 192 (263)
T 2a14_A 121 S---G--RWEEKEE---KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH 192 (263)
T ss_dssp G---G--GHHHHHH---HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred C---c--chhhHHH---HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence 0 0 0000000 0001232 666666552 32 35689999999998875 5667899999999999999
Q ss_pred EEEEeec
Q psy889 152 FLCLEFS 158 (167)
Q Consensus 152 l~~~~~~ 158 (167)
|++.+..
T Consensus 193 li~~~~~ 199 (263)
T 2a14_A 193 LVTTVTL 199 (263)
T ss_dssp EEEEEES
T ss_pred EEEEEee
Confidence 9998754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=118.51 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=91.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ++.+++++|++ .+++.++++....+.
T Consensus 167 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~~-~~~~~a~~~~~~~~~--------------------- 213 (335)
T 2r3s_A 167 LKVLDISASHGLFGIAVAQHN-----------PNAEIFGVDWA-SVLEVAKENARIQGV--------------------- 213 (335)
T ss_dssp SEEEEETCTTCHHHHHHHHHC-----------TTCEEEEEECH-HHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEECCCcCHHHHHHHHHC-----------CCCeEEEEecH-HHHHHHHHHHHhcCC---------------------
Confidence 379999999999999999877 36799999999 999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+.+...+ ||+|++.+++++++ +...++++++++|+|||++++.++.
T Consensus 214 -------------------~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 214 -------------------ASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp -------------------GGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -------------------CcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 1358888888876555433 99999999999884 4579999999999999999999987
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 274 ~~~~ 277 (335)
T 2r3s_A 274 PNSD 277 (335)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=114.76 Aligned_cols=100 Identities=20% Similarity=0.130 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... ++.+++++|+|+.+++.++++....+.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 119 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICF-----------PHLHVTIVDSLNKRITFLEKLSEALQL--------------------- 119 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEecCCCCHHHHHHHHhC-----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999998754 378899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...+.++++.. .++||+|++.. +.+...++++++++|+|||++++..
T Consensus 120 --------------------~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 120 --------------------ENTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp --------------------SSEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------CCEEEEeccHHHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 3577777777665532 56799998854 5678899999999999999999864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=117.82 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~l--------------------- 250 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAF-----------PGLRGTLLER-PPVAEEARELLTGRGL--------------------- 250 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHHHHHHHHHHTTC---------------------
T ss_pred cEEEEeCCCccHHHHHHHHHC-----------CCCeEEEEcC-HHHHHHHHHhhhhcCc---------------------
Confidence 379999999999999999987 3788999999 9999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+. .+.+. .||+|++.++++++++.. ++++++++.|+|||++++.+..
T Consensus 251 -------------------~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 251 -------------------ADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp -------------------TTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred -------------------CCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 156888888876 33333 799999999999888765 7999999999999999999987
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 310 ~~~~ 313 (369)
T 3gwz_A 310 IDER 313 (369)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=117.03 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=91.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 238 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHF-----------PELDSTILNL-PGAIDLVNENAAEKGV--------------------- 238 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHC-----------TTCEEEEEEC-GGGHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCcccHHHHHHHHHC-----------CCCeEEEEec-HHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999999987 3678999999 9999999999876544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+.+.+. +|+|++..+++++++ ..+++++++++|+|||++++.++.
T Consensus 239 -------------------~~~v~~~~~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 239 -------------------ADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp -------------------TTTEEEEECCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred -------------------CCCEEEEeCccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 145888888887765543 399999999998877 789999999999999999998977
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 298 ~~~ 300 (359)
T 1x19_A 298 IDD 300 (359)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=108.64 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=79.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++++..+.
T Consensus 57 ~~vLDlGcG~G~~~~~la~~-------------~~~v~~vD~s~~~~~~a~~~~~~~g~--------------------- 102 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLA-------------GGRAITIEPRADRIENIQKNIDTYGL--------------------- 102 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCCCHHHHHHHHc-------------CCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999999883 57899999999999999999877665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+.......||+|++...+ +.. ++++++++|||||++++....
T Consensus 103 -------------------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 103 -------------------SPRMRAVQGTAPAALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp -------------------TTTEEEEESCTTGGGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred -------------------CCCEEEEeCchhhhcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 126777777776633233569999876532 455 999999999999999986654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=114.57 Aligned_cols=99 Identities=26% Similarity=0.292 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++..
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~------------------------- 97 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQER-------------GFEVVLVDPSKEMLEVAREKGV------------------------- 97 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTT-------------TCEEEEEESCHHHHHHHHHHTC-------------------------
T ss_pred CeEEEeCCCcCHHHHHHHHc-------------CCeEEEEeCCHHHHHHHHhhcC-------------------------
Confidence 47999999999999998873 5689999999999999987642
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
. .+...|...+++.+++||+|++..++. ..++...++++++++|||||.+++...+.
T Consensus 98 --------------------~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 98 --------------------K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp --------------------S--CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred --------------------C--CEEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 1 155667777777778899999876554 44779999999999999999999977653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=106.85 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=85.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~-------------~~~v~~~D~~~~~~~~a~~~~~~~~~--------------------- 99 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADE-------------VKSTTMADINRRAIKLAKENIKLNNL--------------------- 99 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEeCCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999998874 46899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCC--ceEEeecccCCCCCCccchhhHhhhhcccc-cccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNP--RLRFLEANAEELPIESDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
. ++.+...|..+. ...+.||+|++...+++ ......++++++++|+|||.+++.+.
T Consensus 100 --------------------~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 100 --------------------DNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp --------------------TTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------------------CccceEEEECchhcc-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 3 377777777653 33568999999877765 46678999999999999999999876
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
..
T Consensus 159 ~~ 160 (194)
T 1dus_A 159 TK 160 (194)
T ss_dssp ST
T ss_pred CC
Confidence 54
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=112.60 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=78.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++ .
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~----~---------------------- 94 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADR-------------GIEAVGVDGDRTLVDAARAA----G---------------------- 94 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTT-------------TCEEEEEESCHHHHHHHHHT----C----------------------
T ss_pred CEEEEeCCCCCHHHHHHHHC-------------CCEEEEEcCCHHHHHHHHHh----c----------------------
Confidence 47999999999999998873 56899999999999999876 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC---CCC-ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..+...+...+ +.. ..+||+|++..+++ ..+...++++++++|+|||++++.+
T Consensus 95 ---------------------~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~ 152 (227)
T 3e8s_A 95 ---------------------AGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQT 152 (227)
T ss_dssp ---------------------SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------------------ccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence 123333333322 333 34599999999988 8889999999999999999999988
Q ss_pred eccc
Q psy889 157 FSHV 160 (167)
Q Consensus 157 ~~~~ 160 (167)
.+..
T Consensus 153 ~~~~ 156 (227)
T 3e8s_A 153 LHPW 156 (227)
T ss_dssp CCTT
T ss_pred cCcc
Confidence 6543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=117.46 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=79.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCC----Cccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN----PRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~d~~~ 76 (167)
.+|||+|||+|..+..++. . .+.+++|+|+|+.|++.+++++...... ... .++.+..+....
T Consensus 73 ~~vLDiGcG~G~~~~l~~~-~-----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 139 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSAC-S-----------HFEDITMTDFLEVNRQELGRWLQEEPGA-FNWSMYSQHACLIEGKGEC 139 (289)
T ss_dssp SEEEEETCTTCCGGGTTGG-G-----------GCSEEEEECSCHHHHHHHHHHHTTCTTC-CCCHHHHHHHHHHHCSCCC
T ss_pred CeEEEECCCcChHHHHhhc-c-----------CCCeEEEeCCCHHHHHHHHHHHhhCccc-ccchhhhhHHHHhcCcccc
Confidence 4799999999995443333 2 2568999999999999999876432100 000 000011100000
Q ss_pred CCCCCCCCceeeeeeccccccCCCCceEEeecccCC-CC-----CCccchhhHhhhhcccc----cccHHHHHHHHHHhc
Q psy889 77 LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LP-----IESDSYSAYTIAFGIRN----VTRIDKALSEAYRVL 146 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----~~~~~~D~v~~~~~~~~----~~~~~~~l~~~~~~L 146 (167)
+. ...... ......+...|+.. .+ +.+++||+|+++.++++ +++...+|++++++|
T Consensus 140 -------~~--~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~L 205 (289)
T 2g72_A 140 -------WQ--DKERQL-----RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLL 205 (289)
T ss_dssp -------HH--HHHHHH-----HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE
T ss_pred -------hh--hhHHHH-----HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhc
Confidence 00 000000 00013455556655 43 33466999999999998 678899999999999
Q ss_pred CCCcEEEEEee
Q psy889 147 KPGGRFLCLEF 157 (167)
Q Consensus 147 kpgG~l~~~~~ 157 (167)
||||+|++.+.
T Consensus 206 kpGG~l~~~~~ 216 (289)
T 2g72_A 206 RPGGHLLLIGA 216 (289)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=116.47 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=89.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 215 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE-----------PSARGVMLDR-EGSLGVARDNLSSLLA--------------------- 215 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-----------TTCEEEEEEC-TTCTHHHHHHTHHHHH---------------------
T ss_pred CEEEEeCCCchHHHHHHHHHC-----------CCCEEEEeCc-HHHHHHHHHHHhhcCC---------------------
Confidence 379999999999999999887 3678999999 9999999998765443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|... +.+ ..||+|++..++|++++.. +++++++++|+|||++++.+..
T Consensus 216 -------------------~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 216 -------------------GERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp -------------------TTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred -------------------CCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1468888888766 333 5799999999999777654 9999999999999999999876
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 275 ~~~ 277 (334)
T 2ip2_A 275 ISA 277 (334)
T ss_dssp BCS
T ss_pred cCC
Confidence 554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=110.87 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ . .+++++|+|+.+++.++++....+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~-------------~-~~v~~vD~s~~~~~~a~~~~~~~~---------------------- 78 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLAD-------------H-YEVTGVDLSEEMLEIAQEKAMETN---------------------- 78 (243)
T ss_dssp CEEEEESCTTCHHHHHHTT-------------T-SEEEEEESCHHHHHHHHHHHHHTT----------------------
T ss_pred CeEEEecCCCCHHHHHHhh-------------C-CeEEEEECCHHHHHHHHHhhhhcC----------------------
Confidence 4799999999999988876 3 579999999999999999876433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-ccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|..+.+.. .+||+|++.. +++++ .+...++++++++|+|||.+++..
T Consensus 79 --------------------~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 79 --------------------RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp --------------------CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 2467777777766654 7899999875 77776 567889999999999999999843
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=117.06 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=91.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+ +..+++++|+ +.+++.++++....+.
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 227 (352)
T 3mcz_A 181 RTVIDLAGGHGTYLAQVLRRH-----------PQLTGQIWDL-PTTRDAARKTIHAHDL--------------------- 227 (352)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-----------TTCEEEEEEC-GGGHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCcCHHHHHHHHhC-----------CCCeEEEEEC-HHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999999987 3788999999 8899999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|+...+ .....||+|++..++|++++. .+++++++++|+|||++++.+.
T Consensus 228 -------------------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 228 -------------------GGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp -------------------GGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------------CCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 146888888877654 134569999999999988764 8999999999999999999987
Q ss_pred cccCC
Q psy889 158 SHVNN 162 (167)
Q Consensus 158 ~~~~~ 162 (167)
..++.
T Consensus 289 ~~~~~ 293 (352)
T 3mcz_A 289 TMNDD 293 (352)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 66553
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=105.36 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~~D~~~~~~~~a~~~~~------------------------- 89 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQ-------------GHDVLGTDLDPILIDYAKQDFP------------------------- 89 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHCT-------------------------
T ss_pred CeEEEECCCCCHHHHHHHHC-------------CCcEEEEcCCHHHHHHHHHhCC-------------------------
Confidence 47999999999999999873 5689999999999999997642
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hccccc--ccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNV--TRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
++.+...|....+..+++||+|++. .++++. ++...++++++++|+|||.+++...
T Consensus 90 ---------------------~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 90 ---------------------EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp ---------------------TSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------CCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3566677777666667789999987 566666 4568999999999999999998664
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 149 ~ 149 (195)
T 3cgg_A 149 A 149 (195)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=116.43 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=86.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 184 ~~vlDvG~G~G~~~~~l~~~~-----------~~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 230 (374)
T 1qzz_A 184 RHVLDVGGGNGGMLAAIALRA-----------PHLRGTLVEL-AGPAERARRRFADAGL--------------------- 230 (374)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCCcCHHHHHHHHHC-----------CCCEEEEEeC-HHHHHHHHHHHHhcCC---------------------
Confidence 479999999999999999877 3678999999 9999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|+.+ +.+ ..||+|++..+++++++. ..++++++++|+|||++++.++
T Consensus 231 -------------------~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 231 -------------------ADRVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -------------------TTTEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -------------------CCceEEEeCCCCC-cCC-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 1368888888754 222 239999999999988776 4899999999999999999887
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-15 Score=113.98 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=83.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ..+++++|+|+.+++.+++++......-.-.+..++.+ +.+.. .
T Consensus 59 ~vLDlGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~---~ 122 (265)
T 2i62_A 59 LLIDIGSGPTIYQLLSACES------------FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVC-DLEGN---R 122 (265)
T ss_dssp EEEEESCTTCCGGGTTGGGT------------EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHH-HHTTT---C
T ss_pred EEEEECCCccHHHHHHhhcc------------cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhh-ccccc---c
Confidence 79999999999988887633 23899999999999999988753210000000000000 00000 0
Q ss_pred CCCceeeeeeccccccCCCCce-EEeecccCCCC-CCc---cchhhHhhhhccc----ccccHHHHHHHHHHhcCCCcEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRL-RFLEANAEELP-IES---DSYSAYTIAFGIR----NVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-~~~---~~~D~v~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.... ..... ...++ .+...|..... ..+ ++||+|++..+++ +.++...++++++++|||||+|
T Consensus 123 ~~~~--~~~~~------l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l 194 (265)
T 2i62_A 123 MKGP--EKEEK------LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFL 194 (265)
T ss_dssp SCHH--HHHHH------HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred cchH--HHHHH------hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEE
Confidence 0000 00000 00125 67777776643 244 7899999999888 6668899999999999999999
Q ss_pred EEEeec
Q psy889 153 LCLEFS 158 (167)
Q Consensus 153 ~~~~~~ 158 (167)
++.+..
T Consensus 195 i~~~~~ 200 (265)
T 2i62_A 195 VMVDAL 200 (265)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 997743
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-15 Score=113.02 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=83.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +..+++++|+|+.+++.++++....+.
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~~l--------------------- 129 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVR-----------PELELVLVDATRKKVAFVERAIEVLGL--------------------- 129 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEEcCCCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998876 378999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...+.++++.. ..+||+|++.. +.+...++..++++|||||++++..
T Consensus 130 --------------------~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 130 --------------------KGARALWGRAEVLAREAGHREAYARAVARA----VAPLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp --------------------SSEEEEECCHHHHTTSTTTTTCEEEEEEES----SCCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------CceEEEECcHHHhhcccccCCCceEEEECC----cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 4577778877665532 46899998854 5677889999999999999999865
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=111.06 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=75.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc-CCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-VPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||+|||+|.++..+++.. +...++|+|+|+.+++.|++++..... .....
T Consensus 49 ~vLDiGcG~G~~~~~la~~~-----------p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~---------------- 101 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLF-----------PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF---------------- 101 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGS-----------TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC----------------
T ss_pred eEEEEccCCcHHHHHHHHHC-----------CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC----------------
Confidence 69999999999999999876 367899999999999999988753210 00000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CC--CCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LP--IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPG 149 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~Lkpg 149 (167)
.++.++..|... ++ +.+++||.|++.+.-.+... ...+++++.++||||
T Consensus 102 --------------------~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 102 --------------------QNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp --------------------TTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred --------------------CeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence 356666666654 33 45567777765432222110 146899999999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
|.|++..
T Consensus 162 G~l~~~t 168 (235)
T 3ckk_A 162 GLVYTIT 168 (235)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999864
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=106.92 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ++.+++++|+|+.+++.++++....+.
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~-----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 114 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVR-----------PEAHFTLLDSLGKRVRFLRQVQHELKL--------------------- 114 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHC-----------TTSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEECCCCCHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999999876 367899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|....+ ..++||+|++.. +.+...++++++++|+|||.+++..
T Consensus 115 --------------------~~v~~~~~d~~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 115 --------------------ENIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --------------------SSEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --------------------CCeEEEecchhhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 34777788777654 346799998743 4667899999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=107.53 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=71.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++..+ ..+++|+|+|+.+++.+.+..+..
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~-----------~~~V~gvD~s~~~l~~~~~~a~~~----------------------- 104 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVD-----------EGIIYAVEYSAKPFEKLLELVRER----------------------- 104 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTT-----------TSEEEEECCCHHHHHHHHHHHHHC-----------------------
T ss_pred CEEEEECCcCCHHHHHHHHHcC-----------CCEEEEEECCHHHHHHHHHHHhcC-----------------------
Confidence 4799999999999999998763 468999999999987766655432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|.... +.. ++||+|++.. ........++++++++|||||+|++..
T Consensus 105 --------------------~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~--~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 105 --------------------NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI--AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp --------------------SSEEEECSCTTCGGGTTTTC-CCEEEEEECC--CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------CCeEEEEcCCCCchhhcccc-cceeEEEEec--cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2345555555442 233 6799998762 112234456899999999999999963
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=112.03 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=75.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++++|+|+.|++.++++.....
T Consensus 47 ~~VLDlGcGtG~~a~~La~-------------~g~~V~gvD~S~~ml~~Ar~~~~~~~---------------------- 91 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALE-------------RGASVTVFDFSQRMCDDLAEALADRC---------------------- 91 (261)
T ss_dssp CEEEEECTTCHHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHTSSSC----------------------
T ss_pred CEEEEEeCcchHHHHHHHh-------------cCCEEEEEECCHHHHHHHHHHHHhcc----------------------
Confidence 4899999999999999987 36789999999999999998864321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....+...+.+......++||+|++..+++++. +...++.+++++| |||.+++..
T Consensus 92 --------------------v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 92 --------------------VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp --------------------CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred --------------------ceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 122332222210111246799999998888763 5678999999999 999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-15 Score=112.11 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=84.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++... +..+|+++|+|+.|++.+++++...+.
T Consensus 51 ~~VLDlGCG~GplAl~l~~~~-----------p~a~~~A~Di~~~~leiar~~~~~~g~--------------------- 98 (200)
T 3fzg_A 51 SSILDFGCGFNPLALYQWNEN-----------EKIIYHAYDIDRAEIAFLSSIIGKLKT--------------------- 98 (200)
T ss_dssp SEEEEETCTTHHHHHHHHCSS-----------CCCEEEEECSCHHHHHHHHHHHHHSCC---------------------
T ss_pred CeEEEecCCCCHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 489999999999999998765 367999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+ .|.... ...+.||+|+...++|.+.+.+.++.++++.|+|||.++..+
T Consensus 99 -------------------~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 99 -------------------TIKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp -------------------SSEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred -------------------CccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 124555 333222 345779999999999999888888889999999999998755
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-15 Score=110.25 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=84.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ++.+++++|+++.+++.+++++...+.
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 108 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQ----------PGARLLTMEINPDCAAITQQMLNFAGL--------------------- 108 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHhCC----------CCCEEEEEeCChHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999998763 378999999999999999999887654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCC-----ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~-----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+ ++.. .++||+|++....++.......+..+ ++|+|||++++
T Consensus 109 -------------------~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~ 168 (221)
T 3u81_A 109 -------------------QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA 168 (221)
T ss_dssp -------------------GGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred -------------------CCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence 1346777766533 2211 26799998877666666666777777 99999999998
Q ss_pred Eeeccc
Q psy889 155 LEFSHV 160 (167)
Q Consensus 155 ~~~~~~ 160 (167)
.+...+
T Consensus 169 ~~~~~~ 174 (221)
T 3u81_A 169 DNVIVP 174 (221)
T ss_dssp SCCCCC
T ss_pred eCCCCc
Confidence 665543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=107.82 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=81.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.
T Consensus 79 ~~vLdiG~G~G~~~~~la~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 124 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHL-------------VQHVCSVERIKGLQWQARRRLKNLDL--------------------- 124 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEecCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999999874 46899999999999999999887665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|..+.....++||+|++..+++++++ +++++|+|||++++..-
T Consensus 125 --------------------~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 125 --------------------HNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp --------------------CSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEEC
T ss_pred --------------------CceEEEECCcccCCccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEc
Confidence 4677888887765555678999999888877764 58999999999998553
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=119.04 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=87.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh-------cccCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-------LFKVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~d 73 (167)
.+|||+|||+|.+++.++...+ ..+++|+|+++.+++.|+++.+. .+.
T Consensus 175 d~VLDLGCGtG~l~l~lA~~~g-----------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-------------- 229 (438)
T 3uwp_A 175 DLFVDLGSGVGQVVLQVAAATN-----------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-------------- 229 (438)
T ss_dssp CEEEEESCTTSHHHHHHHHHCC-----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB--------------
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC--------------
Confidence 4799999999999999987652 34599999999999999876532 111
Q ss_pred cccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCc--cchhhHhhhhcccccccHHHHHHHHHHhcCCCcE
Q psy889 74 AEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 74 ~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
...++.++.+|+.+.++.+ ..+|+|+++..+ +.++....|.+++++|||||+
T Consensus 230 -------------------------~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGr 283 (438)
T 3uwp_A 230 -------------------------KHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGR 283 (438)
T ss_dssp -------------------------CCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCE
T ss_pred -------------------------CCCCeEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcE
Confidence 0146888888887776543 468999887654 357889999999999999999
Q ss_pred EEEEeecccCCc
Q psy889 152 FLCLEFSHVNNS 163 (167)
Q Consensus 152 l~~~~~~~~~~~ 163 (167)
|++++.-.+.+.
T Consensus 284 IVssE~f~p~d~ 295 (438)
T 3uwp_A 284 IVSSKPFAPLNF 295 (438)
T ss_dssp EEESSCSSCTTC
T ss_pred EEEeecccCCCC
Confidence 999877766543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=115.98 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=84.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~-------------g~~V~gvDis~~al~~A~~n~~~~~~--------------------- 280 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARM-------------GAEVVGVEDDLASVLSLQKGLEANAL--------------------- 280 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHT-------------TCEEEEEESBHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeeeCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 37999999999999999883 56899999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc-----cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+.+...|..+....+++||+|+++..+++ ......++++++++|+|||.++++
T Consensus 281 ---------------------~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 281 ---------------------KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp ---------------------CCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------CeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 366777777776555678999999877775 456789999999999999999996
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 340 ~ 340 (381)
T 3dmg_A 340 S 340 (381)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=125.25 Aligned_cols=113 Identities=9% Similarity=0.010 Sum_probs=89.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++|+|+|+.+++.|++++.....-.
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~----------p~a~VtGVDIS~emLe~AReRLa~~lnAk------------------- 773 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPT----------SLQTIIGVDISPKGLARAAKMLHVKLNKE------------------- 773 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCC----------CCCEEEEEESCHHHHHHHHHHHHHHTTTT-------------------
T ss_pred CEEEEECCCCCHHHHHHHHhCC----------CCCeEEEEECCHHHHHHHHHHhhhccchh-------------------
Confidence 4799999999999999988542 24789999999999999998775432100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.....++.+..+|+..++..++.||+|++..+++++++.. .++++++++|||| .+++.+.+
T Consensus 774 ----------------r~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 774 ----------------ACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp ----------------CSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred ----------------hcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 0000468888999988888889999999999999998754 6899999999999 77776654
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 837 ~ 837 (950)
T 3htx_A 837 Y 837 (950)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=107.63 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=78.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~---------------------- 87 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAER-------------GYEVVGLDLHEEMLRVARRKAKERN---------------------- 87 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEeCCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHhcC----------------------
Confidence 37999999999999999873 5689999999999999999886543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-cccc--cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRN--VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~--~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|+...+.. ++||+|++.. .+++ ..+...++++++++|+|||.+++.
T Consensus 88 --------------------~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 88 --------------------LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp --------------------CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2467777777766543 5799998753 2232 246789999999999999999874
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=107.14 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++. +.+++++|+++.+++.++++.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~-------------~~~~~~~D~~~~~~~~~~~~~-------------------------- 74 (230)
T 3cc8_A 34 KEVLDIGCSSGALGAAIKEN-------------GTRVSGIEAFPEAAEQAKEKL-------------------------- 74 (230)
T ss_dssp SEEEEETCTTSHHHHHHHTT-------------TCEEEEEESSHHHHHHHHTTS--------------------------
T ss_pred CcEEEeCCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHhC--------------------------
Confidence 47999999999999998873 468999999999999888542
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC--CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE--LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+...|... .++.+++||+|++..+++++++...++++++++|+|||++++...+
T Consensus 75 ----------------------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 75 ----------------------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp ----------------------SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred ----------------------CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1344455544 4556678999999999999999999999999999999999997654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=113.01 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=83.4
Q ss_pred CeEEeeecCCCchH----HHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIA----FRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
.||+|+|||+|..+ +.+++.++... .+.+++|+|+|+.+++.|++....... .++
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~-------~~~~I~atDis~~~L~~Ar~~~y~~~~--------------~~~ 165 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAP-------GRWKVFASDIDTEVLEKARSGIYRLSE--------------LKT 165 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCT-------TSEEEEEEESCHHHHHHHHHTEEEGGG--------------GTT
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCC-------CCeEEEEEECCHHHHHHHHhcCCchhh--------------hhc
Confidence 37999999999854 44445442100 135899999999999999976521110 011
Q ss_pred CC--CCCCCC--------ceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccccH--HHHHHHHH
Q psy889 77 LP--IESDSY--------SAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRI--DKALSEAY 143 (167)
Q Consensus 77 l~--~~~~~f--------d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~--~~~l~~~~ 143 (167)
+| ....+| ..+.+...++ .++.|...|+.+.+++ .+.||+|+|.+++.+++.. ++++++++
T Consensus 166 ~~~~~~~~~f~~~~~~~~~~~~v~~~lr------~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~ 239 (274)
T 1af7_A 166 LSPQQLQRYFMRGTGPHEGLVRVRQELA------NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFV 239 (274)
T ss_dssp SCHHHHHHHEEECCTTSCSEEEECHHHH------TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHG
T ss_pred CCHHHHHHHhhccccCCCCceeechhhc------ccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHH
Confidence 11 000000 0111111121 3688999998775544 5789999999998887654 89999999
Q ss_pred HhcCCCcEEEE
Q psy889 144 RVLKPGGRFLC 154 (167)
Q Consensus 144 ~~LkpgG~l~~ 154 (167)
+.|+|||+|++
T Consensus 240 ~~L~pgG~L~l 250 (274)
T 1af7_A 240 PLLKPDGLLFA 250 (274)
T ss_dssp GGEEEEEEEEE
T ss_pred HHhCCCcEEEE
Confidence 99999999988
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=108.50 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=74.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh----cccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD----LFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.+.++... .+.
T Consensus 30 ~vLDiGcG~G~~~~~la~~~-----------p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~------------------ 80 (218)
T 3mq2_A 30 VVLDVGTGDGKHPYKVARQN-----------PSRLVVALDADKSRMEKISAKAAAKPAKGGL------------------ 80 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHC-----------TTEEEEEEESCGGGGHHHHHHHTSCGGGTCC------------------
T ss_pred EEEEecCCCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHhhhhcCC------------------
Confidence 79999999999999999976 378999999999999865444322 111
Q ss_pred CCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHh---hhhcc--cccccHHHHHHHHHHhcCCCcEE
Q psy889 78 PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYT---IAFGI--RNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~---~~~~~--~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.++.+...|..++++.++. |.+. ..... +++++...++++++++|||||.+
T Consensus 81 -----------------------~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (218)
T 3mq2_A 81 -----------------------PNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASF 136 (218)
T ss_dssp -----------------------TTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEE
T ss_pred -----------------------CceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEE
Confidence 3567777777776655444 4443 22222 25566789999999999999999
Q ss_pred EEE
Q psy889 153 LCL 155 (167)
Q Consensus 153 ~~~ 155 (167)
++.
T Consensus 137 ~~~ 139 (218)
T 3mq2_A 137 LVA 139 (218)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=106.54 Aligned_cols=94 Identities=24% Similarity=0.287 Sum_probs=79.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++. . +++|+|+.+++.++++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~--------------~---~~vD~s~~~~~~a~~~--------------------------- 84 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKI--------------K---IGVEPSERMAEIARKR--------------------------- 84 (219)
T ss_dssp SCEEEETCTTSTTHHHHTC--------------C---EEEESCHHHHHHHHHT---------------------------
T ss_pred CcEEEeCCCCCHHHHHHHH--------------H---hccCCCHHHHHHHHhc---------------------------
Confidence 4799999999999887654 2 9999999999999864
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
++.+...+....+..+++||+|++..+++++++...++++++++|+|||.+++.+...
T Consensus 85 ---------------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 85 ---------------------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp ---------------------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ---------------------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 1455666776677777889999999999999999999999999999999999987653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-14 Score=113.81 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=84.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++|+|+| .+++.|+++....+.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g------------~~~v~gvD~s-~~l~~a~~~~~~~~~--------------------- 113 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAG------------ARKVIGIECS-SISDYAVKIVKANKL--------------------- 113 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTT------------CSEEEEEECS-THHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeccchHHHHHHHHCC------------CCEEEEECcH-HHHHHHHHHHHHcCC---------------------
Confidence 479999999999999998852 4589999999 599999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc---ccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...+.++++++.++||+|++... +.+......++.++.++|||||+++.
T Consensus 114 -------------------~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 114 -------------------DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp -------------------TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred -------------------CCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 14588889998888877789999998654 33457789999999999999999874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=107.40 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=78.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+.. .
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~~---~---------------- 103 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQ------------AKKVTFLELDKTVANQLKKNLQTLKCS---S---------------- 103 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEECSCHHHHHHHHHHHHHTTCC---T----------------
T ss_pred CeEEEcCCccCHHHHHHHHcc------------CCEEEEEECCHHHHHHHHHHHHHhCCC---c----------------
Confidence 379999999999999877643 358999999999999999998765430 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccc-hhhHhhhhcccccccHHHHHHHH--HHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDS-YSAYTIAFGIRNVTRIDKALSEA--YRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~ 155 (167)
.++.+...|..+.. ....+ ||+|++...++ ......+++.+ .++|+|||.+++.
T Consensus 104 --------------------~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~ 162 (201)
T 2ift_A 104 --------------------EQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVE 162 (201)
T ss_dssp --------------------TTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred --------------------cceEEEECCHHHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEE
Confidence 24666666655432 12467 89888866543 45567788888 6689999999986
Q ss_pred eecc
Q psy889 156 EFSH 159 (167)
Q Consensus 156 ~~~~ 159 (167)
....
T Consensus 163 ~~~~ 166 (201)
T 2ift_A 163 TEKD 166 (201)
T ss_dssp EESS
T ss_pred ECCC
Confidence 6543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=112.85 Aligned_cols=104 Identities=21% Similarity=0.195 Sum_probs=86.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+.
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~-----------~~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 231 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRA-----------PHVSATVLEM-AGTVDTARSYLKDEGL--------------------- 231 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-TTHHHHHHHHHHHTTC---------------------
T ss_pred cEEEEeCCcCcHHHHHHHHhC-----------CCCEEEEecC-HHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999999877 3678999999 9999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+ +.+ ..||+|++..+++++++. ..++++++++|+|||++++.+..
T Consensus 232 -------------------~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 232 -------------------SDRVDVVEGDFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -------------------TTTEEEEECCTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------------------CCceEEEeCCCCC-CCC-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 1368888888754 222 249999999999888765 58999999999999999999877
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=106.84 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=81.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+.
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 108 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLG------------AKSVLATDISDESMTAAEENAALNGI--------------------- 108 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHCC------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999987632 45899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|..+. .+++||+|++...+++ ...++++++++|+|||++++.++...
T Consensus 109 --------------------~~v~~~~~d~~~~--~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 109 --------------------YDIALQKTSLLAD--VDGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp --------------------CCCEEEESSTTTT--CCSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred --------------------CceEEEecccccc--CCCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 3367777777553 3478999998765443 57889999999999999999776543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=109.66 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=39.3
Q ss_pred eEEeeecCCCchHHHHHHh--hccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNY--VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
+|||+|||+|.++..++.. . ...+++|+|+|+.+++.|++++...
T Consensus 54 ~vLD~gcGsG~~~~~la~~~~~-----------~~~~v~gvDis~~~l~~A~~~~~~~ 100 (250)
T 1o9g_A 54 TLWDPCCGSGYLLTVLGLLHRR-----------SLRQVIASDVDPAPLELAAKNLALL 100 (250)
T ss_dssp EEEETTCTTSHHHHHHHHHTGG-----------GEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred eEEECCCCCCHHHHHHHHHhcc-----------CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 7999999999999999886 3 2568999999999999999887643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-14 Score=105.26 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=79.6
Q ss_pred CeEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C
Q psy889 1 MYILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P 78 (167)
Q Consensus 1 ~~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~ 78 (167)
.+|||+||| +|.++..+++.. +.+++++|+++.+++.+++++...+. ++++..+|+..+ +
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF------------NCKVTATEVDEEFFEYARRNIERNNS------NVRLVKSNGGIIKG 118 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH------------CCEEEEEECCHHHHHHHHHHHHHTTC------CCEEEECSSCSSTT
T ss_pred CEEEEcCCCHHHHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEeCCchhhhh
Confidence 479999999 999999999865 57899999999999999999876543 566666665443 2
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
++.+.||.+.+..+......... .+. ... .....+.......+++++.++|||||++++...
T Consensus 119 ~~~~~fD~I~~npp~~~~~~~~~--------~~~-------~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 119 VVEGTFDVIFSAPPYYDKPLGRV--------LTE-------REA--IGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp TCCSCEEEEEECCCCC--------------------------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cccCceeEEEECCCCcCCccccc--------cCh-------hhh--hccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 44566666666555433211000 000 000 000111223357889999999999999998643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-15 Score=122.69 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. ...
T Consensus 109 ~~VLDiGcG~G~~~~~l~~~-------------g~~v~gvD~s~~~~~~a~~~~--~~~--------------------- 152 (416)
T 4e2x_A 109 PFIVEIGCNDGIMLRTIQEA-------------GVRHLGFEPSSGVAAKAREKG--IRV--------------------- 152 (416)
T ss_dssp CEEEEETCTTTTTHHHHHHT-------------TCEEEEECCCHHHHHHHHTTT--CCE---------------------
T ss_pred CEEEEecCCCCHHHHHHHHc-------------CCcEEEECCCHHHHHHHHHcC--CCc---------------------
Confidence 48999999999999999873 568999999999999998651 100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....+...+...+++.+++||+|++..+++++++...++++++++|||||++++...
T Consensus 153 --------------------~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 153 --------------------RTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp --------------------ECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------------------ceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 011122233444455568899999999999999999999999999999999999654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=112.95 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++|+|+|+ +++.|++++...+.
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g------------~~~v~gvD~s~-~~~~a~~~~~~~~~--------------------- 111 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAG------------AKKVLGVDQSE-ILYQAMDIIRLNKL--------------------- 111 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEEESST-HHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeeccCcHHHHHHHHcC------------CCEEEEEChHH-HHHHHHHHHHHcCC---------------------
Confidence 379999999999999988742 35899999996 99999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh---cccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|..+++++.++||+|++.. .+.+...+..++.++.++|||||.++
T Consensus 112 -------------------~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 112 -------------------EDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -------------------TTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -------------------CCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 1467888888888777777899999765 34556678889999999999999998
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-14 Score=109.38 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||+|.++..+++.+. ++.+++++|+++.+++.+++++... +.
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~g~-------------------- 161 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALN----------GKGTLTVVERDEDNLKKAMDNLSEFYDI-------------------- 161 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHT----------TSSEEEEECSCHHHHHHHHHHHHTTSCC--------------------
T ss_pred CEEEEecCCCCHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHhcCCC--------------------
Confidence 4799999999999999998742 3678999999999999999998755 43
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+ ++.+++||+|++ +.++...++++++++|||||++++.+.+
T Consensus 162 ---------------------~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 162 ---------------------GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp ---------------------TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CcEEEEECchhc-cCcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 457777777766 445567999987 3567788999999999999999997654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=109.32 Aligned_cols=124 Identities=11% Similarity=0.113 Sum_probs=77.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++...+. .+++++..+|+..++
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~------------~~~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~~~ 114 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRT------------KAKIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKITDL 114 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTC------------CCEEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGGGT
T ss_pred CEEEEcCCchhHHHHHHHHhc------------CCcEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhhhh
Confidence 479999999999999998864 34899999999999999999986654 234666666666654
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
++.+.||.+++..+....... .....+ ..... . -.....+...+++.+.++|+|||+++++.
T Consensus 115 ~~~~~fD~Ii~npPy~~~~~~----~~~~~~--------~~~~~--a--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 115 IPKERADIVTCNPPYFATPDT----SLKNTN--------EHFRI--A--RHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp SCTTCEEEEEECCCC---------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCccEEEECCCCCCCccc----cCCCCc--------hHHHh--h--hccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 445566666555444221000 000000 00000 0 00012345688999999999999999853
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=108.80 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=79.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++... +.++++++|+++.|++.++++....
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG----------~~G~V~avD~s~~~~~~l~~~a~~~----------------------- 125 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIG----------PRGRIYGVEFAPRVMRDLLTVVRDR----------------------- 125 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEECCHHHHHHHHHHSTTC-----------------------
T ss_pred CEEEEecCcCCHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHHhhHhh-----------------------
Confidence 5899999999999999999986 5789999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccC---CCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAE---ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++..+..+.. ..+.....+|+|++. +.+..+...++.++++.|||||++++..
T Consensus 126 --------------------~ni~~V~~d~~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 126 --------------------RNIFPILGDARFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp --------------------TTEEEEESCTTCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------cCeeEEEEeccCccccccccceEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 23555555443 344556778988753 3344567789999999999999999864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=104.72 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=78.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++++..+.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~------------~~~V~~vD~s~~~l~~a~~~~~~~~~--------------------- 102 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRY------------AAGATLIEMDRAVSQQLIKNLATLKA--------------------- 102 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEECSCHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEeCCCcCHHHHHHHhcC------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999877643 35899999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHH--hcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 157 (167)
.++.+...|... .+.....||+|++...++ ......+++.+.+ +|+|||++++...
T Consensus 103 --------------------~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 103 --------------------GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp --------------------CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --------------------CcEEEEECCHHHHHhhcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 356677776654 344456788888765433 3456677887766 5999999998654
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 162 ~ 162 (202)
T 2fpo_A 162 V 162 (202)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-14 Score=107.42 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.+++++...+.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~g~--------------------- 113 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELP----------ADGQLLTLEADAHHAQVARENLQLAGV--------------------- 113 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEECCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCchHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999998763 268999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCC--CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPI--ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+ ++. ..++||+|++.. .......++++++++|||||++++.+.
T Consensus 114 -------------------~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 114 -------------------DQRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp -------------------TTTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred -------------------CCcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 1357777776644 222 134799998744 345567789999999999999998655
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 172 ~ 172 (248)
T 3tfw_A 172 V 172 (248)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=111.37 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.++++++..+. .++++..+|+..++..
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~----------~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~~~~ 184 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMR----------NDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGEL 184 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeEEEEECChhhcccc
Confidence 4799999999999999998764 257899999999999999999987664 1355555665554433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+.+..+-+........ .+.... ...+-+ .........++++++++|||||++++.+++
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~--------p~~~~~-~~~~~~-----~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKN--------PERKWN-RTMDDI-----KFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC-----------------CCHHHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCEEEEeCCCCCcccccCC--------hhHhhc-CCHHHH-----HHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3445544444332211000000 000000 000000 001122368899999999999999997654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=106.39 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=83.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++... +.
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~~D~~~~~~~~a~~~~~~~~g~-------------------- 147 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVG----------EKGLVESYEARPHHLAQAERNVRAFWQV-------------------- 147 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHHHHCCC--------------------
T ss_pred CEEEEECCCcCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhcCC--------------------
Confidence 3799999999999999999853 3678999999999999999988755 43
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+.++.++.||+|++ +.++...+++++.++|+|||++++.+.+
T Consensus 148 ---------------------~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 148 ---------------------ENVRFHLGKLEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp ---------------------CCEEEEESCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred ---------------------CCEEEEECchhhcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4577777777666566678999887 2456778999999999999999997754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=103.98 Aligned_cols=100 Identities=16% Similarity=0.005 Sum_probs=80.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++++|+++.+++.++++....+.
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 127 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVG----------EDGLVVSIERIPELAEKAERTLRKLGY--------------------- 127 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999998773 247899999999999999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|........+.||+|++..++++++ .+++++|||||.+++...
T Consensus 128 --------------------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 128 --------------------DNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp --------------------TTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred --------------------CCeEEEECCcccCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 346676766643222356799999988888766 478999999999998654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=108.02 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=81.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++.+. ++.+++++|+++.+++.|+++++..+.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~---------------------- 106 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLA----------DNTTLTCIDPESEHQRQAKALFREAGY---------------------- 106 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSC----------TTSEEEEECSCHHHHHHHHHHHHHTTC----------------------
T ss_pred CEEEEcCCchHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 799999999999999999874 378999999999999999999987665
Q ss_pred CCCceeeeeeccccccCCC-CceEEeecccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPN-PRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
. .++.+..+|..+. + ..+++||+|++.. .......++++++++|||||++++-+.
T Consensus 107 ------------------~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 107 ------------------SPSRVRFLLSRPLDVMSRLANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp ------------------CGGGEEEECSCHHHHGGGSCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred ------------------CcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 1 2567777665442 1 2256799997753 234566789999999999999998443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=110.78 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=82.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++... ...+++++|+|+.+++.+++++...+.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~g~--------------------- 125 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVERLGI--------------------- 125 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCchHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4899999999999999998763 246799999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|..+.....++||+|++..+++++. +++.++|||||++++...
T Consensus 126 --------------------~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 126 --------------------ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp --------------------CSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred --------------------CCeEEEECChhhccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 457777888776544557899999988887766 578899999999999653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-14 Score=105.08 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ..+++++|+|+.+++.++++....
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~----------------------- 121 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIAD-----------KGIVYAIEYAPRIMRELLDACAER----------------------- 121 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTT-----------TSEEEEEESCHHHHHHHHHHTTTC-----------------------
T ss_pred CEEEEEcccCCHHHHHHHHHcC-----------CcEEEEEECCHHHHHHHHHHhhcC-----------------------
Confidence 4799999999999999998762 478999999999999999876432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC----CCCCccchhhHhhhhcccccccH---HHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~ 153 (167)
.++.+...|... .+.. .+||+|++ .+++. ..++++++++|+|||+++
T Consensus 122 --------------------~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~ 175 (230)
T 1fbn_A 122 --------------------ENIIPILGDANKPQEYANIV-EKVDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp --------------------TTEEEEECCTTCGGGGTTTS-CCEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCeEEEECCCCCcccccccC-ccEEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEE
Confidence 246666666655 4444 67898872 33444 777999999999999999
Q ss_pred EE
Q psy889 154 CL 155 (167)
Q Consensus 154 ~~ 155 (167)
+.
T Consensus 176 i~ 177 (230)
T 1fbn_A 176 IA 177 (230)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=114.23 Aligned_cols=105 Identities=9% Similarity=-0.040 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHH-------HHHHHhcccCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a-------~~~~~~~~~~~~~~~~~~~~~~d 73 (167)
.+|||+|||+|.++..++...+ ..+++|+|+++.+++.| ++++...+..
T Consensus 244 ~~VLDLGCGsG~la~~LA~~~g-----------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~------------- 299 (433)
T 1u2z_A 244 DTFMDLGSGVGNCVVQAALECG-----------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMR------------- 299 (433)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC-----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-------------
T ss_pred CEEEEeCCCcCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-------------
Confidence 4799999999999999998763 45799999999999998 7776654420
Q ss_pred cccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCC--CC--CccchhhHhhhhcccccccHHHHHHHHHHhcCCC
Q psy889 74 AEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PI--ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 149 (167)
Q Consensus 74 ~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkpg 149 (167)
..++.+..++.... ++ ..+.||+|+++..+ +.++...+|++++++||||
T Consensus 300 --------------------------~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 300 --------------------------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVG 352 (433)
T ss_dssp --------------------------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTT
T ss_pred --------------------------CCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCC
Confidence 03566666533211 11 24679999986655 3477888999999999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
|.+++.+
T Consensus 353 G~lVi~d 359 (433)
T 1u2z_A 353 CKIISLK 359 (433)
T ss_dssp CEEEESS
T ss_pred eEEEEee
Confidence 9999974
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=108.80 Aligned_cols=102 Identities=10% Similarity=0.101 Sum_probs=81.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.+++++...+.
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~------------~~~V~~vD~s~~~~~~a~~n~~~n~~--------------------- 173 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYG------------KAKVIAIEKDPYTFKFLVENIHLNKV--------------------- 173 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHT------------CCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecccCCHHHHHHHHhC------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999999865 23799999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|..+... ...||+|++.. ......++.+++++|+|||.+++.+++.
T Consensus 174 -------------------~~~v~~~~~D~~~~~~-~~~fD~Vi~~~----p~~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 174 -------------------EDRMSAYNMDNRDFPG-ENIADRILMGY----VVRTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp -------------------TTTEEEECSCTTTCCC-CSCEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -------------------CceEEEEECCHHHhcc-cCCccEEEECC----chhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 1346777777776654 56789887743 2345678899999999999999988774
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-14 Score=108.24 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=73.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~-------------------------- 90 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQ-------------AARWAAYDFSPELLKLARANA-------------------------- 90 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CeEEEeCCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhC--------------------------
Confidence 47999999999999999874 568999999999999999871
Q ss_pred CCCCceeeeeeccccccCCCCceEEeeccc-CCCCCC-ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANA-EELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.+...|. ..+++. +++||+|++. .+...++++++++|||||.++
T Consensus 91 --------------------~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 91 --------------------PHADVYEWNGKGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp --------------------TTSEEEECCSCSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred --------------------CCceEEEcchhhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEE
Confidence 3567777777 456666 7789999875 467788899999999999998
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.2e-14 Score=107.65 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=83.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-c-cCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-F-KVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~-~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++... + .
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~------------------- 151 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVG----------PAGQVISYEQRADHAEHARRNVSGCYGQP------------------- 151 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHHTSC-------------------
T ss_pred CEEEEEcccccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhcCCC-------------------
Confidence 3799999999999999998763 3678999999999999999998765 3 1
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+.++.++.||+|++ +.++...++.++.++|+|||++++...+
T Consensus 152 ---------------------~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 152 ---------------------PDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp ---------------------CTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ---------------------CCcEEEEECchHhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 04577777777666665677999887 2456678999999999999999997654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=109.60 Aligned_cols=109 Identities=13% Similarity=-0.019 Sum_probs=81.7
Q ss_pred eEEeeecCC--CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
+|||+|||+ +..+..+++... ++.+++++|.|+.|++.+++++.....
T Consensus 81 q~LDLGcG~pT~~~~~~la~~~~----------P~arVv~VD~sp~mLa~Ar~~l~~~~~-------------------- 130 (277)
T 3giw_A 81 QFLDIGTGIPTSPNLHEIAQSVA----------PESRVVYVDNDPIVLTLSQGLLASTPE-------------------- 130 (277)
T ss_dssp EEEEESCCSCCSSCHHHHHHHHC----------TTCEEEEEECCHHHHHTTHHHHCCCSS--------------------
T ss_pred EEEEeCCCCCcccHHHHHHHHHC----------CCCEEEEEeCChHHHHHHHHHhccCCC--------------------
Confidence 699999997 445566655543 478999999999999999988753321
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCC------CCccchh-----hHhhhhccccccc---HHHHHHHHHHh
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP------IESDSYS-----AYTIAFGIRNVTR---IDKALSEAYRV 145 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D-----~v~~~~~~~~~~~---~~~~l~~~~~~ 145 (167)
.++.++.+|+.+.. .....|| .|+++.++||+++ ...+++++++.
T Consensus 131 ---------------------~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~ 189 (277)
T 3giw_A 131 ---------------------GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEP 189 (277)
T ss_dssp ---------------------SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTT
T ss_pred ---------------------CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHh
Confidence 35677777766541 0123355 4778889999988 46899999999
Q ss_pred cCCCcEEEEEeecccC
Q psy889 146 LKPGGRFLCLEFSHVN 161 (167)
Q Consensus 146 LkpgG~l~~~~~~~~~ 161 (167)
|+|||+|++.+++...
T Consensus 190 L~PGG~Lvls~~~~d~ 205 (277)
T 3giw_A 190 LPSGSYLAMSIGTAEF 205 (277)
T ss_dssp SCTTCEEEEEEECCTT
T ss_pred CCCCcEEEEEeccCCC
Confidence 9999999999887643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-14 Score=108.29 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=68.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCC-hHHHHHH---HHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVG---EQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|||+|||+|.++..+++.. ++.+++|+|+| +.|++.| +++....+.
T Consensus 27 ~vLDiGCG~G~~~~~la~~~-----------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------------------ 77 (225)
T 3p2e_A 27 VHIDLGTGDGRNIYKLAIND-----------QNTFYIGIDPVKENLFDISKKIIKKPSKGGL------------------ 77 (225)
T ss_dssp EEEEETCTTSHHHHHHHHTC-----------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------------------
T ss_pred EEEEEeccCcHHHHHHHHhC-----------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------------------
Confidence 79999999999999998654 37889999999 7777776 655544443
Q ss_pred CCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc--------ccccHHHHHHHHHHhcCCC
Q psy889 78 PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--------NVTRIDKALSEAYRVLKPG 149 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------~~~~~~~~l~~~~~~Lkpg 149 (167)
.++.+...+.+.++. ..+|.|.+..+.. ...+...++++++++||||
T Consensus 78 -----------------------~~v~~~~~d~~~l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG 132 (225)
T 3p2e_A 78 -----------------------SNVVFVIAAAESLPF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKE 132 (225)
T ss_dssp -----------------------SSEEEECCBTTBCCG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred -----------------------CCeEEEEcCHHHhhh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence 356677777766642 2234333322111 1122356899999999999
Q ss_pred cEEEE
Q psy889 150 GRFLC 154 (167)
Q Consensus 150 G~l~~ 154 (167)
|++++
T Consensus 133 G~l~i 137 (225)
T 3p2e_A 133 AHFEF 137 (225)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99998
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=112.49 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.+++++...+...
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~-----------p~~~V~gvD~s~~al~~Ar~n~~~ngl~~------------------- 273 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKN-----------PQAKVVFVDESPMAVASSRLNVETNMPEA------------------- 273 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHHHHHCGGG-------------------
T ss_pred CeEEEEeCcchHHHHHHHHHC-----------CCCEEEEEECcHHHHHHHHHHHHHcCCCc-------------------
Confidence 379999999999999999976 37899999999999999999987654300
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|..+ ++.+++||+|+++..+++.. ....++++++++|+|||.++++
T Consensus 274 -------------------~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 274 -------------------LDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp -------------------GGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------CceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 0246667777665 34557899999877766421 2347899999999999999996
Q ss_pred eec
Q psy889 156 EFS 158 (167)
Q Consensus 156 ~~~ 158 (167)
.-.
T Consensus 334 ~n~ 336 (375)
T 4dcm_A 334 ANR 336 (375)
T ss_dssp EET
T ss_pred EEC
Confidence 543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=105.60 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=82.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|++++...+.
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~~~~~~~~a~~~~~~~~~--------------------- 143 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVG----------PEGRVVSYEIREDFAKLAWENIKWAGF--------------------- 143 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEecCCchHHHHHHHHHhC----------CCeEEEEEecCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999999853 378999999999999999999877654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+. +.+.+||+|++ +.++...++++++++|+|||++++...+
T Consensus 144 -------------------~~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 144 -------------------DDRVTIKLKDIYEG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp -------------------TTTEEEECSCGGGC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred -------------------CCceEEEECchhhc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 13477777777643 45567999887 3566778999999999999999986643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-15 Score=114.82 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=88.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++++|+|+.+++.+++++...+. .+++++..+|+..++ +
T Consensus 80 ~~vLD~gcG~G~~~~~la~-------------~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~-~ 141 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFAL-------------TGMRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDFLLLA-S 141 (241)
T ss_dssp SEEEETTCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHG-G
T ss_pred CEEEECccccCHHHHHHHH-------------cCCEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECChHHhc-c
Confidence 4799999999999999987 367899999999999999999876543 247889999988877 6
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh--cccc---cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIRN---VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~~~~---~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+.||.+.+..+.+........+ .+.... ..++.. +++... .... .-.....+.++.++|+|||.+.+.
T Consensus 142 ~~~~D~v~~~~~~~~~~~~~~~~----~~~~~~-L~pgG~-~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 142 FLKADVVFLSPPWGGPDYATAET----FDIRTM-MSPDGF-EIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp GCCCSEEEECCCCSSGGGGGSSS----BCTTTS-CSSCHH-HHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred cCCCCEEEECCCcCCcchhhhHH----HHHHhh-cCCcce-eHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEE
Confidence 67899999888877654331111 111111 233333 232211 0000 011122456788899999988774
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 216 ~ 216 (241)
T 3gdh_A 216 Q 216 (241)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=108.06 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=76.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+ .+.+++++|+|+.+++.++++.
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~-----------~~~~v~~vD~s~~~~~~a~~~~-------------------------- 129 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADAL-----------PEITTFGLDVSKVAIKAAAKRY-------------------------- 129 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTC-----------TTSEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CEEEEECCCCCHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHhC--------------------------
Confidence 379999999999999999865 2678999999999999998763
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|...+++.+++||+|++..+ ...+++++++|||||.+++.+...
T Consensus 130 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 130 --------------------PQVTFCVASSHRLPFSDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp --------------------TTSEEEECCTTSCSBCTTCEEEEEEESC-------CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred --------------------CCcEEEEcchhhCCCCCCceeEEEEeCC-------hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 2356667777777777778999987543 235889999999999999987654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-14 Score=112.75 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=80.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++.. +..+++++|++ .++. +++....+.
T Consensus 187 ~vLDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~~-~~~~--~~~~~~~~~---------------------- 230 (348)
T 3lst_A 187 TVADVGGGRGGFLLTVLREH-----------PGLQGVLLDRA-EVVA--RHRLDAPDV---------------------- 230 (348)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------TTEEEEEEECH-HHHT--TCCCCCGGG----------------------
T ss_pred eEEEECCccCHHHHHHHHHC-----------CCCEEEEecCH-HHhh--cccccccCC----------------------
Confidence 79999999999999999987 36789999984 4443 222221111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|+. .+.+ +||+|++..++|++++. .+++++++++|||||++++.+...
T Consensus 231 ------------------~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 231 ------------------AGRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp ------------------TTSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred ------------------CCCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 146888888885 2222 79999999999998877 699999999999999999998765
Q ss_pred cCC
Q psy889 160 VNN 162 (167)
Q Consensus 160 ~~~ 162 (167)
++.
T Consensus 290 ~~~ 292 (348)
T 3lst_A 290 PEG 292 (348)
T ss_dssp CSS
T ss_pred CCC
Confidence 553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-14 Score=106.33 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=82.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +..+++++|+++.+++.++++++..+.
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~-----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 120 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASIS-----------DDIHVTTIERNETMIQYAKQNLATYHF--------------------- 120 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTC-----------TTCEEEEEECCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeCchhHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999999855 378999999999999999999987654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+. + ..+++||+|++.. .......++++++++|+|||++++-+
T Consensus 121 -------------------~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 121 -------------------ENQVRIIEGNALEQFENVNDKVYDMIFIDA---AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp -------------------TTTEEEEESCGGGCHHHHTTSCEEEEEEET---TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred -------------------CCcEEEEECCHHHHHHhhccCCccEEEEcC---cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 13677877777553 3 2357899998653 35567789999999999999998843
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-15 Score=109.79 Aligned_cols=129 Identities=16% Similarity=0.039 Sum_probs=67.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.+++++...+. ++++..+|+.+ +++
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~-----------~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~-~~~ 93 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALAC-----------PGVSVTAVDLSMDALAVARRNAERFGA------VVDWAAADGIE-WLI 93 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHC-----------TTEEEEEEECC-------------------------CCHHHHHH-HHH
T ss_pred CEEEEecCCHhHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHHHHHhCC------ceEEEEcchHh-hhh
Confidence 379999999999999999976 367899999999999999988765432 67788888777 554
Q ss_pred C-----CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 S-----DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~-----~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
. +.||.+.+..+....... ..+......++-.... ..-........++++++++|||||++++
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEI-----------DQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC-----------------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhhhccCcccEEEECCCCCCCccc-----------cccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4 788888777665321110 0000000000100000 0011123347888999999999999655
Q ss_pred Eeec
Q psy889 155 LEFS 158 (167)
Q Consensus 155 ~~~~ 158 (167)
.++.
T Consensus 163 ~~~~ 166 (215)
T 4dzr_A 163 LEVG 166 (215)
T ss_dssp EECT
T ss_pred EEEC
Confidence 5654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=113.08 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++|+|+| .+++.++++++..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g------------~~~V~gvD~s-~~~~~a~~~~~~~~~--------------------- 110 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAG------------ARKVYAVEAT-KMADHARALVKANNL--------------------- 110 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTT------------CSEEEEEESS-TTHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeccCcCHHHHHHHhcC------------CCEEEEEccH-HHHHHHHHHHHHcCC---------------------
Confidence 479999999999999998853 3489999999 999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.++..++++++.. ++||+|++....+.. .....++..++++|||||.+++..
T Consensus 111 -------------------~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 111 -------------------DHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp -------------------TTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred -------------------CCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 14578888888877665 789999985543333 557889999999999999998744
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=99.14 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ ...+++++|+++.+++.++++....+.
T Consensus 37 ~~vLdiG~G~G~~~~~l~~-------------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 82 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAK-------------RCKFVYAIDYLDGAIEVTKQNLAKFNI--------------------- 82 (183)
T ss_dssp CEEEEESCCCSHHHHHHHT-------------TSSEEEEEECSHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHh-------------cCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999987 268899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+ +...+.||+|++..+ .+...++++++++ |||.+++.+..
T Consensus 83 --------------------~~~~~~~~d~~~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 83 --------------------KNCQIIKGRAED-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp --------------------CSEEEEESCHHH-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred --------------------CcEEEEECCccc-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 457777777665 444568999998765 6778899999988 99999997644
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=104.42 Aligned_cols=45 Identities=13% Similarity=-0.046 Sum_probs=40.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
+|||+|||+|.++..++... +...++|+|+|+.+++.+++++...
T Consensus 52 ~vLDiGcG~G~~~~~la~~~-----------~~~~v~gvD~s~~~l~~a~~~~~~~ 96 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAF-----------PEDLILGMEIRVQVTNYVEDRIIAL 96 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHS-----------TTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHhC-----------CCCCEEEEEcCHHHHHHHHHHHHHH
Confidence 69999999999999999876 3578999999999999999987654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-14 Score=112.55 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+ +..+++++|+ +.+++.++++
T Consensus 205 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~--------------------------- 245 (368)
T 3reo_A 205 TTIVDVGGGTGAVASMIVAKY-----------PSINAINFDL-PHVIQDAPAF--------------------------- 245 (368)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHTTCCCC---------------------------
T ss_pred CEEEEeCCCcCHHHHHHHHhC-----------CCCEEEEEeh-HHHHHhhhhc---------------------------
Confidence 379999999999999999988 3788999999 7777655421
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|+.+ +.+.+ |+|++..++|++++. .++|++++++|+|||++++.++.
T Consensus 246 --------------------~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 246 --------------------SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp --------------------TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred --------------------CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 357888888765 44433 999999999987764 58899999999999999999987
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 303 ~~~~ 306 (368)
T 3reo_A 303 LPPS 306 (368)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=108.78 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|++ .+++.++++....+.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g------------~~~v~~vD~s-~~~~~a~~~~~~~~~--------------------- 85 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHG------------AKHVIGVDMS-SIIEMAKELVELNGF--------------------- 85 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTC------------CSEEEEEESS-THHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCccHHHHHHHHHCC------------CCEEEEEChH-HHHHHHHHHHHHcCC---------------------
Confidence 479999999999999988742 3589999999 599999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc---ccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...+..+++.+..+||+|++... +.+...+..++.++.++|||||.++.
T Consensus 86 -------------------~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 86 -------------------SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp -------------------TTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred -------------------CCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 14678888888877766678999998643 33456678899999999999999973
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=106.94 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=79.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+. .++++..+|.... ++
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~-----------~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~v~~~~~d~~~~-~~ 173 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASER-----------PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFSA-LA 173 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-----------TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTGG-GT
T ss_pred CEEEEecCCccHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEcchhhh-cc
Confidence 379999999999999999876 367899999999999999999876654 1456666665542 22
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+.||.+++.++....... ..........| +..+. ..-..+.....+++++.++|+|||++++.
T Consensus 174 ~~~fD~Iv~npPy~~~~~~----~l~~~v~~~~p------~~al~-~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 174 GQQFAMIVSNPPYIDEQDP----HLQQGDVRFEP------LTALV-AADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp TCCEEEEEECCCCBCTTCH----HHHSSGGGSSC------STTTB-CHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCcccc----ccChhhhhcCc------HHHHc-CCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4456655555444221000 00000000000 00000 00011245678899999999999999984
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-14 Score=111.77 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=82.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++....+.
T Consensus 199 ~VLDlGcG~G~~~~~la~~~-----------~~~~v~~vD~s~~~l~~a~~~~~~~~~---------------------- 245 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHS-----------PKIRLTLCDVSAPAVEASRATLAANGV---------------------- 245 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHC-----------TTCBCEEEESBHHHHHHHHHHHHHTTC----------------------
T ss_pred eEEEecCccCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHhCC----------------------
Confidence 79999999999999999876 356899999999999999999875443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc-----cccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+...|..... +++||+|+++..+++ ......++++++++|||||.++++.
T Consensus 246 --------------------~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 246 --------------------EGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp --------------------CCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------CCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 2345556654432 568999999887764 3457889999999999999999976
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
..
T Consensus 304 ~~ 305 (343)
T 2pjd_A 304 NA 305 (343)
T ss_dssp ET
T ss_pred cC
Confidence 44
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-14 Score=101.77 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=77.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 79 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRG------------MSAAVLVEKNRKAQAIIQDNIIMTKA--------------------- 79 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CCEEEEECCCHHHHHHHHHHHHTTTC---------------------
T ss_pred CeEEEeCCCCCHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999988742 46899999999999999999875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHH--HhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+ .+...+.||+|++...++ .......++.+. ++|+|||.+++...
T Consensus 80 -------------------~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 80 -------------------ENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp -------------------GGGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -------------------CCceEEEECcHHHhHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 0246666666654 232335689998865432 234456666666 99999999999665
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
..
T Consensus 140 ~~ 141 (177)
T 2esr_A 140 KT 141 (177)
T ss_dssp TT
T ss_pred Cc
Confidence 43
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=102.58 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=78.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++....+.....
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~----------------- 131 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVG----------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLS----------------- 131 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-----------------
T ss_pred CEEEEEcCCcCHHHHHHHHHhC----------CCcEEEEEeCCHHHHHHHHHHHHhhcccccC-----------------
Confidence 4799999999999999998763 2468999999999999999988653210000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|........+.||+|++...++. ++++++++|||||++++....
T Consensus 132 -------------------~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 132 -------------------SGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp -------------------TSSEEEEESCGGGCCGGGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred -------------------CCcEEEEECCcccCcccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEec
Confidence 03567777776654444567999988765543 346789999999999996543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=103.44 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=80.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.+++++...+.
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 108 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLS----------SGGRVVTLEASEKHADIARSNIERANL--------------------- 108 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCC----------SSCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999998763 267999999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-C---CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-I---ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~---~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|..+. + . ..+.||+|++... ......++++++++|+|||.+++.
T Consensus 109 -------------------~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 109 -------------------NDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp -------------------TTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred -------------------CCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 13577777766432 1 1 1156999987543 445678999999999999999885
Q ss_pred eec
Q psy889 156 EFS 158 (167)
Q Consensus 156 ~~~ 158 (167)
+..
T Consensus 167 ~~~ 169 (223)
T 3duw_A 167 NVV 169 (223)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-14 Score=113.66 Aligned_cols=100 Identities=11% Similarity=0.048 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ .
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~-----------~~~~~~~~D~-~~~~~~a~~------~--------------------- 251 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKY-----------PLIKGINFDL-PQVIENAPP------L--------------------- 251 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHTTCCC------C---------------------
T ss_pred CEEEEeCCCCcHHHHHHHHHC-----------CCCeEEEeCh-HHHHHhhhh------c---------------------
Confidence 379999999999999999987 3678999999 888766542 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|+.. +.+. ||+|++..++|++++.. .++++++++|+|||++++.++.
T Consensus 252 --------------------~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 252 --------------------SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp --------------------TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 347777888766 4433 89999999999998876 9999999999999999999887
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 309 ~~~~ 312 (372)
T 1fp1_D 309 LPEE 312 (372)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 6654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-14 Score=104.62 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=81.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++..+. .+.+++++|+++.+++.+++++...+.
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 114 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALP----------KDGTLITCDVDEKSTALAKEYWEKAGL--------------------- 114 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCcchHHHHHHHHhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 4799999999999999998763 268999999999999999999887664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCC-----ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+. +.. .++||+|++.. .......++++++++|+|||++++
T Consensus 115 -------------------~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~lv~ 172 (225)
T 3tr6_A 115 -------------------SDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREGGLIAV 172 (225)
T ss_dssp -------------------TTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCceEEEeCCHHHHHHHhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 13467777665432 111 16799998543 345677899999999999999998
Q ss_pred Eeec
Q psy889 155 LEFS 158 (167)
Q Consensus 155 ~~~~ 158 (167)
.+..
T Consensus 173 ~~~~ 176 (225)
T 3tr6_A 173 DNVL 176 (225)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 6654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-14 Score=102.20 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=78.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+.
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 92 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRG------------MDKSICIEKNFAALKVIKENIAITKE--------------------- 92 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CCEEEeCCccCHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999887732 46899999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC----CCccchhhHhhhhcccccccHHHHHHHH--HHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEA--YRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~ 154 (167)
..++.+...|..+.. ....+||+|++...++ .......+..+ +++|+|||.+++
T Consensus 93 -------------------~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 93 -------------------PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -------------------CcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEE
Confidence 034666666654421 1246799998865533 34556667766 889999999998
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
.....
T Consensus 153 ~~~~~ 157 (187)
T 2fhp_A 153 ETDKT 157 (187)
T ss_dssp EEETT
T ss_pred EeCCc
Confidence 65444
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=110.98 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.+++ .
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~------~--------------------- 230 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETF-----------PKLKCIVFDR-PQVVENLSG------S--------------------- 230 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHTTCCC------B---------------------
T ss_pred ceEEEeCCCccHHHHHHHHHC-----------CCCeEEEeeC-HHHHhhccc------C---------------------
Confidence 379999999999999999887 3678999999 888876653 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCC---CcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP---GGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~~~ 155 (167)
.++.+...|+.. +.+ .||+|++..++|++++.. +++++++++||| ||++++.
T Consensus 231 --------------------~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 231 --------------------NNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp --------------------TTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred --------------------CCcEEEeccccC-CCC--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 247777777754 333 399999999999988876 999999999999 9999999
Q ss_pred eecccCC
Q psy889 156 EFSHVNN 162 (167)
Q Consensus 156 ~~~~~~~ 162 (167)
++..++.
T Consensus 288 e~~~~~~ 294 (352)
T 1fp2_A 288 DMVIDKK 294 (352)
T ss_dssp ECEECTT
T ss_pred EeecCCC
Confidence 8876543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=105.83 Aligned_cols=121 Identities=11% Similarity=0.069 Sum_probs=78.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh---cccCCCCCCcccccccccccC-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD---LFKVPVPNPRLRFLEANAEEL- 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~d~~~l- 77 (167)
+|||+|||+|.++..++... +..+++++|+++.+++.+++++.. .+. .+++++..+|+...
T Consensus 39 ~VLDlG~G~G~~~l~la~~~-----------~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~~ 103 (260)
T 2ozv_A 39 RIADLGAGAGAAGMAVAARL-----------EKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLRA 103 (260)
T ss_dssp EEEECCSSSSHHHHHHHHHC-----------TTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCCH
T ss_pred EEEEeCChHhHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHHh
Confidence 79999999999999999876 367899999999999999998865 332 22466677776665
Q ss_pred ------CCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCc
Q psy889 78 ------PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 78 ------~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG 150 (167)
+++.+.||.+++.++..... .....+. .-. ...+ .......+++.+.++|+|||
T Consensus 104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~------~~~~~~~--------~~~-----~a~~~~~~~~~~~l~~~~~~LkpgG 164 (260)
T 2ozv_A 104 KARVEAGLPDEHFHHVIMNPPYNDAG------DRRTPDA--------LKA-----EAHAMTEGLFEDWIRTASAIMVSGG 164 (260)
T ss_dssp HHHHHTTCCTTCEEEEEECCCC----------------------------------------CCHHHHHHHHHHHEEEEE
T ss_pred hhhhhhccCCCCcCEEEECCCCcCCC------CCCCcCH--------HHH-----HHhhcCcCCHHHHHHHHHHHcCCCC
Confidence 24556666666665443211 0000000 000 0001 12346788999999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
++++..
T Consensus 165 ~l~~~~ 170 (260)
T 2ozv_A 165 QLSLIS 170 (260)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998843
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=102.05 Aligned_cols=101 Identities=11% Similarity=0.022 Sum_probs=75.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++++|+|+.+++.+.++....
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g----------~~~~v~gvD~s~~~i~~~~~~a~~~----------------------- 125 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVG----------PDGLVYAVEFSHRSGRDLINLAKKR----------------------- 125 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEECCCHHHHHHHHHHHHHC-----------------------
T ss_pred CEEEEEcccCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHhhcc-----------------------
Confidence 4799999999999999999863 2578999999999888887766532
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|... ++...++||+|++... .......++.+++++|||||++++..
T Consensus 126 --------------------~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 126 --------------------TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp --------------------TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------CCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 245666666655 2334567999988443 22223556889999999999999943
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-14 Score=103.71 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.+++++...+.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 106 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAIS----------ISSRVVMIDPDRDNVEHARRMLHDNGL--------------------- 106 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHSG---------------------
T ss_pred CEEEEEcCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHCCC---------------------
Confidence 3799999999999999998763 268999999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+. +..++ ||+|++.. ...+...++++++++|+|||++++.+
T Consensus 107 -------------------~~~v~~~~~d~~~~~~~~~~-fD~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 107 -------------------IDRVELQVGDPLGIAAGQRD-IDILFMDC---DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp -------------------GGGEEEEESCHHHHHTTCCS-EEEEEEET---TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred -------------------CceEEEEEecHHHHhccCCC-CCEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 13566777666442 33335 89988753 24567889999999999999999854
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-14 Score=114.32 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=82.8
Q ss_pred CeEEeeecC------CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc
Q psy889 1 MYILFYLVF------PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 1 ~~vLD~g~G------~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 74 (167)
.+|||+||| +|..+..++..+- +..+++|+|+|+.|. ...
T Consensus 218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~f----------P~a~V~GVDiSp~m~---------~~~--------------- 263 (419)
T 3sso_A 218 VRVLEIGVGGYKHPEWGGGSLRMWKSFF----------PRGQIYGLDIMDKSH---------VDE--------------- 263 (419)
T ss_dssp CEEEEECCSCTTCSSCCCHHHHHHHHHC----------TTCEEEEEESSCCGG---------GCB---------------
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHHHhC----------CCCEEEEEECCHHHh---------hcC---------------
Confidence 489999999 7888888877642 378999999999872 111
Q ss_pred ccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCC------ccchhhHhhhhcccccccHHHHHHHHHHhcCC
Q psy889 75 EELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE------SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 75 ~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp 148 (167)
.++.+.++|..++++. +++||+|++.. .++..+...+|++++++|||
T Consensus 264 --------------------------~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKP 316 (419)
T 3sso_A 264 --------------------------LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRP 316 (419)
T ss_dssp --------------------------TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEE
T ss_pred --------------------------CCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCC
Confidence 4688888888877655 67899998864 46677889999999999999
Q ss_pred CcEEEEEeecccCCccC
Q psy889 149 GGRFLCLEFSHVNNSML 165 (167)
Q Consensus 149 gG~l~~~~~~~~~~~~~ 165 (167)
||+|++.++..+.++..
T Consensus 317 GGvlVi~Dl~tsy~p~f 333 (419)
T 3sso_A 317 GGLYVIEDMWTAYWPGF 333 (419)
T ss_dssp EEEEEEECGGGGGCTBT
T ss_pred CeEEEEEecccccCccc
Confidence 99999999886665443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=103.94 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=82.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+ ++.+++++|+++.+++.+++++...+.
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~-----------~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 103 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQAL-----------PEATIVSIERDERRYEEAHKHVKALGL--------------------- 103 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHC-----------TTCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCCcHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999999876 368899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCC--ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIE--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|.... +.. ++.||+|++... ..+...+++++.++|+|||++++.++
T Consensus 104 -------------------~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 104 -------------------ESRIELLFGDALQLGEKLELYPLFDVLFIDAA---KGQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp -------------------TTTEEEECSCGGGSHHHHTTSCCEEEEEEEGG---GSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred -------------------CCcEEEEECCHHHHHHhcccCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 13567777776553 222 467999988654 34678899999999999999999644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-14 Score=109.60 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.|+++++..+.
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~--------------------- 110 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALP----------DDGQVITCDINEGWTKHAHPYWREAKQ--------------------- 110 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSC----------TTCEEEEEECCCSSCCCSHHHHHHTTC---------------------
T ss_pred CEEEEeeCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999999773 378999999999999999999987664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CC-----ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~-----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..+|..+.. .. .++||+|++... ......++++++++|+|||++++
T Consensus 111 -------------------~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 111 -------------------EHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp -------------------TTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEE
Confidence 136777777765432 11 367999987542 45567789999999999999999
Q ss_pred Eeec
Q psy889 155 LEFS 158 (167)
Q Consensus 155 ~~~~ 158 (167)
-+..
T Consensus 169 d~~~ 172 (242)
T 3r3h_A 169 DNIF 172 (242)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 5544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=107.16 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=87.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||+|..+..++++. +..+++..|. +.+++.++++......
T Consensus 182 ~v~DvGgG~G~~~~~l~~~~-----------p~~~~~~~dl-p~v~~~a~~~~~~~~~---------------------- 227 (353)
T 4a6d_A 182 LMCDLGGGAGALAKECMSLY-----------PGCKITVFDI-PEVVWTAKQHFSFQEE---------------------- 227 (353)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------SSCEEEEEEC-HHHHHHHHHHSCC--C----------------------
T ss_pred eEEeeCCCCCHHHHHHHHhC-----------CCceeEeccC-HHHHHHHHHhhhhccc----------------------
Confidence 79999999999999999988 4788999996 7799999887653332
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|+...+. ..+|+|++..++|.+++. .++|+++++.|+|||++++.|..-
T Consensus 228 -------------------~rv~~~~gD~~~~~~--~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 228 -------------------EQIDFQEGDFFKDPL--PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp -------------------CSEEEEESCTTTSCC--CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred -------------------CceeeecCccccCCC--CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 578888888765443 347999999999988775 578999999999999999999765
Q ss_pred cCC
Q psy889 160 VNN 162 (167)
Q Consensus 160 ~~~ 162 (167)
++.
T Consensus 287 ~~~ 289 (353)
T 4a6d_A 287 DED 289 (353)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-14 Score=100.14 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=74.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++....+.
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~-------------~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 88 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEG-------------WEAVLVEKDPEAVRLLKENVRRTGL--------------------- 88 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTT-------------CEEEEECCCHHHHHHHHHHHHHHTC---------------------
T ss_pred CeEEEeCCCcCHHHHHHHHCC-------------CeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999998843 4499999999999999998875432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CC---CccchhhHhhhhcccccccHHHHHHHHH--HhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PI---ESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~---~~~~~D~v~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 154 (167)
++.+...|..+. +. ...+||+|++...++ .....++..+. ++|+|||.+++
T Consensus 89 ---------------------~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 89 ---------------------GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp ---------------------CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred ---------------------ceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEE
Confidence 345555555432 11 123689998876554 44556666666 99999999998
Q ss_pred Eeeccc
Q psy889 155 LEFSHV 160 (167)
Q Consensus 155 ~~~~~~ 160 (167)
......
T Consensus 146 ~~~~~~ 151 (171)
T 1ws6_A 146 QHPKDL 151 (171)
T ss_dssp EEETTS
T ss_pred EeCCcc
Confidence 665443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=110.98 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=81.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+ +..+++++|+ +.+++.+++.
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~~--------------------------- 243 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHY-----------PTIKGVNFDL-PHVISEAPQF--------------------------- 243 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHTTCCCC---------------------------
T ss_pred CEEEEeCCCCCHHHHHHHHHC-----------CCCeEEEecC-HHHHHhhhhc---------------------------
Confidence 479999999999999999987 3778999999 7776655421
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|+.. +.+.+ |+|++..++|++++ ..++|+++++.|+|||++++.++.
T Consensus 244 --------------------~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 244 --------------------PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp --------------------TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred --------------------CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 467888888876 55443 99999999998755 568899999999999999999987
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
.++.
T Consensus 301 ~~~~ 304 (364)
T 3p9c_A 301 LPVN 304 (364)
T ss_dssp BCSS
T ss_pred cCCC
Confidence 6653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=105.11 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=82.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ..+++++|+++.+++.++++++..+.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~-----------~~~V~~vD~s~~av~~a~~n~~~n~l--------------------- 168 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK-----------PKLVYAIEKNPTAYHYLCENIKLNKL--------------------- 168 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC-----------CSEEEEEECCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCcCCHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999998762 56899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|..+.+. ...||+|++... .....++.++.+.|+|||.+++.++...
T Consensus 169 --------------------~~~~~~~~d~~~~~~-~~~~D~Vi~d~p----~~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 169 --------------------NNVIPILADNRDVEL-KDVADRVIMGYV----HKTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp --------------------SSEEEEESCGGGCCC-TTCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred --------------------CCEEEEECChHHcCc-cCCceEEEECCc----ccHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 356677777766522 457888877542 2567788999999999999999887653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=98.40 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=78.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.
T Consensus 35 ~~vldiG~G~G~~~~~l~~~-------------~~~v~~~D~~~~~~~~a~~~~~~~~~--------------------- 80 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGR-------------VRRVYAIDRNPEAISTTEMNLQRHGL--------------------- 80 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHh-------------cCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999998873 46799999999999999998875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|... +... +.||+|++...+ .+...++++++++|+|||.+++....
T Consensus 81 -------------------~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 81 -------------------GDNVTLMEGDAPE-ALCKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp -------------------CTTEEEEESCHHH-HHTTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred -------------------CcceEEEecCHHH-hcccCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 1356666666544 1111 479999887654 35688999999999999999997654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.2e-14 Score=118.35 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=87.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|||+|.++..+++ .+++++|+|.++.+++.|+.++...+.
T Consensus 68 ~~vLDvGCG~G~~~~~la~-------------~ga~V~giD~~~~~i~~a~~~a~~~~~--------------------- 113 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLAS-------------KGATIVGIDFQQENINVCRALAEENPD--------------------- 113 (569)
T ss_dssp CEEEEETCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHTSTT---------------------
T ss_pred CeEEEECCCCcHHHHHHHh-------------CCCEEEEECCCHHHHHHHHHHHHhcCC---------------------
Confidence 4899999999999999998 478999999999999999998875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccccHHHH--HHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKA--LSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~--l~~~~~~LkpgG~l~~~~ 156 (167)
.++.|...+.+++ ...++.||+|+|..+++|+++...+ +..+++.|.++|..++..
T Consensus 114 --------------------~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 114 --------------------FAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp --------------------SEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred --------------------CceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 3688888888776 3556789999999999999876533 456788888888777766
Q ss_pred ecccC
Q psy889 157 FSHVN 161 (167)
Q Consensus 157 ~~~~~ 161 (167)
+...+
T Consensus 174 ~~~~e 178 (569)
T 4azs_A 174 LAVKE 178 (569)
T ss_dssp CCCTT
T ss_pred ecccc
Confidence 65544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-13 Score=106.80 Aligned_cols=107 Identities=22% Similarity=0.181 Sum_probs=77.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.... +..+++|+|+++.+++.|++++...+.
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~----------~~~~v~g~Di~~~~i~~a~~n~~~~g~--------------------- 253 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLG----------PTSPVYAGDLDEKRLGLAREAALASGL--------------------- 253 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHC----------TTSCEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEeCCCCcCHHHHHHHHhhC----------CCceEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999998762 257899999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc--------ccccHHHHHHHHHHhcCCCcEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--------NVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.++.+...|..+++.....||+|+++-.+. .......+++++.++|+|||.+
T Consensus 254 --------------------~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l 313 (354)
T 3tma_A 254 --------------------SWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV 313 (354)
T ss_dssp --------------------TTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred --------------------CceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEE
Confidence 234555555555444334456655532211 1122367889999999999999
Q ss_pred EEEeec
Q psy889 153 LCLEFS 158 (167)
Q Consensus 153 ~~~~~~ 158 (167)
++....
T Consensus 314 ~i~t~~ 319 (354)
T 3tma_A 314 ALLTLR 319 (354)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 997654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=104.77 Aligned_cols=101 Identities=19% Similarity=0.108 Sum_probs=77.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~-------------g~~v~gvDi~~~~v~~a~~n~~~~~~--------------------- 167 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKL-------------GGKALGVDIDPMVLPQAEANAKRNGV--------------------- 167 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCCcHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999988773 34899999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
. +.+...+.... +..++||+|+++...+ .+..++.++.++|+|||++++..+...
T Consensus 168 --------------------~-v~~~~~d~~~~-~~~~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~lils~~~~~ 222 (254)
T 2nxc_A 168 --------------------R-PRFLEGSLEAA-LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILKD 222 (254)
T ss_dssp --------------------C-CEEEESCHHHH-GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG
T ss_pred --------------------c-EEEEECChhhc-CcCCCCCEEEECCcHH---HHHHHHHHHHHHcCCCCEEEEEeeccC
Confidence 2 55555555432 2346799998864322 357889999999999999999776543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=101.01 Aligned_cols=110 Identities=7% Similarity=0.002 Sum_probs=79.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++...... .+..+++++|+++.+++.+++++...+.....
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~----------------- 138 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLE------NKNSYVIGLERVKDLVNFSLENIKRDKPELLK----------------- 138 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTT------CTTCEEEEEESCHHHHHHHHHHHHHHCGGGGS-----------------
T ss_pred CEEEEECCCCCHHHHHHHHHhcccC------CCCCEEEEEeCCHHHHHHHHHHHHHcCccccc-----------------
Confidence 4799999999999999988652000 01368999999999999999998765410000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..... ...++||+|++...++++ +++++++|+|||++++..
T Consensus 139 -------------------~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 139 -------------------IDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPI 193 (227)
T ss_dssp -------------------STTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEE
T ss_pred -------------------cCCEEEEECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEE
Confidence 035777777776543 345679999887766543 478899999999999865
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
..
T Consensus 194 ~~ 195 (227)
T 2pbf_A 194 EE 195 (227)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=102.18 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=76.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~----------------------- 115 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEI-------------VDKVVSVEINEKMYNYASKLLSYY----------------------- 115 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTC-----------------------
T ss_pred CEEEEEcCCCCHHHHHHHHH-------------cCEEEEEeCCHHHHHHHHHHHhhc-----------------------
Confidence 47999999999999999874 467999999999999999887532
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|........++||+|++..+++++. .+++++|+|||++++....
T Consensus 116 --------------------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 116 --------------------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp --------------------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred --------------------CCeEEEECCcccccccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcC
Confidence 146666666655222356799999988887765 3689999999999997643
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=105.76 Aligned_cols=126 Identities=11% Similarity=0.040 Sum_probs=80.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++++..+. .++++..+|+..++.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~ 149 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMK----------NKGTIVAVEISKTRTKALKSNINRMGV-----LNTIIINADMRKYKDY 149 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTT----------TCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCHHHHHHH
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEECCCHHHHHHHHHHHHHhCC-----CcEEEEeCChHhcchh
Confidence 4799999999999999998763 137899999999999999999887654 245566666555442
Q ss_pred ---CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ---ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ---~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+.+..+.+....... + + ....+ ...........++++++++|||||++++.+
T Consensus 150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~-------~----p--~~~~~-----~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 150 LLKNEIFFDKILLDAPCSGNIIKDK-------N----R--NVSEE-----DIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp HHHTTCCEEEEEEEECCC-------------------------HH-----HHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccccCCEEEEcCCCCCCccccc-------C----C--CCCHH-----HHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2445555555433322110000 0 0 00000 001122456789999999999999999976
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
++.
T Consensus 212 cs~ 214 (274)
T 3ajd_A 212 CSM 214 (274)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-13 Score=100.63 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +.+++++|+++.+++.+++++...+.
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 139 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIV------------KTDVYTIERIPELVEFAKRNLERAGV--------------------- 139 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHH------------CSCEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeCCcCHHHHHHHHHh------------CCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999999876 26799999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|. ..++.. ..||+|++..+++++. .+++++|+|||.+++..-.
T Consensus 140 --------------------~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 140 --------------------KNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp --------------------CSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred --------------------CCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEec
Confidence 3566777765 223333 3499999988776655 3789999999999996543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=102.42 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=77.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC-ChHHHHHHHHHHHh-----cccCCCCCCccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI-NRAMLDVGEQRARD-----LFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~d~ 74 (167)
.+|||+|||+|.++..++... ..+++++|+ ++.+++.++++... .+..
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~------------~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~-------------- 134 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAG------------ADQVVATDYPDPEILNSLESNIREHTANSCSSE-------------- 134 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTT------------CSEEEEEECSCHHHHHHHHHHHHTTCC--------------------
T ss_pred CeEEEecccccHHHHHHHHcC------------CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc--------------
Confidence 379999999999999887732 348999999 89999999998832 1110
Q ss_pred ccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCC--C----CccchhhHhhhhcccccccHHHHHHHHHHhcC-
Q psy889 75 EELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--I----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK- 147 (167)
Q Consensus 75 ~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lk- 147 (167)
.....++.+...+..+.. . ..+.||+|++..++++.++...+++.+.++|+
T Consensus 135 ----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~ 192 (281)
T 3bzb_A 135 ----------------------TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLAL 192 (281)
T ss_dssp --------------------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCC
T ss_pred ----------------------cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcc
Confidence 000023555443332211 1 24679999998888888999999999999999
Q ss_pred --C--CcEEEEE
Q psy889 148 --P--GGRFLCL 155 (167)
Q Consensus 148 --p--gG~l~~~ 155 (167)
| ||.++++
T Consensus 193 ~~p~~gG~l~v~ 204 (281)
T 3bzb_A 193 PANDPTAVALVT 204 (281)
T ss_dssp TTTCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 9 9987764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=96.31 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=67.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+ +++|+|+|+.+++. .
T Consensus 25 ~~vLD~GcG~G~~~~~l~~-------------~~-~v~gvD~s~~~~~~---------~--------------------- 60 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRK-------------RN-TVVSTDLNIRALES---------H--------------------- 60 (170)
T ss_dssp CEEEEETCTTCHHHHHHTT-------------TS-EEEEEESCHHHHHT---------C---------------------
T ss_pred CeEEEeccCccHHHHHHHh-------------cC-cEEEEECCHHHHhc---------c---------------------
Confidence 3799999999999999887 35 89999999999887 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc---------cHHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---------RIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~---------~~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...|... +..+++||+|+++..+++.+ +...++.++.+.+ |||.
T Consensus 61 --------------------~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~ 118 (170)
T 3q87_B 61 --------------------RGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGM 118 (170)
T ss_dssp --------------------SSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSE
T ss_pred --------------------cCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCE
Confidence 234455555544 33345666666655544332 2356788888888 9999
Q ss_pred EEEEeeccc
Q psy889 152 FLCLEFSHV 160 (167)
Q Consensus 152 l~~~~~~~~ 160 (167)
+++.+....
T Consensus 119 l~~~~~~~~ 127 (170)
T 3q87_B 119 LYLLVIEAN 127 (170)
T ss_dssp EEEEEEGGG
T ss_pred EEEEEecCC
Confidence 999776543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=98.25 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=74.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.++++....
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~~~~~~~~~----------------------- 121 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVG----------WEGKIFGIEFSPRVLRELVPIVEER----------------------- 121 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHSSC-----------------------
T ss_pred CEEEEEeccCCHHHHHHHHHhC----------CCeEEEEEECCHHHHHHHHHHHhcc-----------------------
Confidence 4799999999999999998863 2578999999999999998876532
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhcccccccH-HHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..... ....+||+|++... .++. ..++.+++++|||||++++.
T Consensus 122 --------------------~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 122 --------------------RNIVPILGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp --------------------TTEEEEECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCCEEEEccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 24666666665421 12347999986543 2333 34599999999999999997
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=101.11 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=78.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc-----cCCCCCCcccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-----KVPVPNPRLRFLEANAE 75 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~d~~ 75 (167)
.+|||+|||+|..+..+++....... ....+++++|+++.+++.+++++...+ .
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~-----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---------------- 144 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGV-----DADTRIVGIEHQAELVRRSKANLNTDDRSMLDS---------------- 144 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCC-----CTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred CEEEEECCCccHHHHHHHHhcccccC-----CccCEEEEEEcCHHHHHHHHHHHHhcCccccCC----------------
Confidence 47999999999999999886630000 002589999999999999999886543 2
Q ss_pred cCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCc-cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 76 ELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 76 ~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+...|... ++.. +.||+|++...++++. ++++++|||||++++
T Consensus 145 -------------------------~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 145 -------------------------GQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV 192 (227)
T ss_dssp -------------------------TSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred -------------------------CceEEEECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEE
Confidence 357777777665 3333 6799999887766544 678999999999998
Q ss_pred Eee
Q psy889 155 LEF 157 (167)
Q Consensus 155 ~~~ 157 (167)
...
T Consensus 193 ~~~ 195 (227)
T 1r18_A 193 PVG 195 (227)
T ss_dssp EES
T ss_pred EEe
Confidence 653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-13 Score=96.61 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=75.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+. .+.+++++|+++ +++.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~----------~~~~v~~~D~~~-~~~~------------------------------- 61 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIG----------GKGRIIACDLLP-MDPI------------------------------- 61 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHC----------TTCEEEEEESSC-CCCC-------------------------------
T ss_pred CeEEEeCCCCCHHHHHHHHHhC----------CCCeEEEEECcc-cccc-------------------------------
Confidence 3799999999999999998863 357899999998 6421
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--------CCccchhhHhhhhcccccccH-----------HHHHHH
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRI-----------DKALSE 141 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~v~~~~~~~~~~~~-----------~~~l~~ 141 (167)
.++.+...|....+ ..+++||+|++...+++.... ..++++
T Consensus 62 --------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (180)
T 1ej0_A 62 --------------------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEM 121 (180)
T ss_dssp --------------------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHH
Confidence 23555666665544 445679999887766655443 688999
Q ss_pred HHHhcCCCcEEEEEeecccC
Q psy889 142 AYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 142 ~~~~LkpgG~l~~~~~~~~~ 161 (167)
++++|+|||.+++..+....
T Consensus 122 ~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 122 CRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp HHHHEEEEEEEEEEEESSTT
T ss_pred HHHHcCCCcEEEEEEecCCc
Confidence 99999999999997765543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=103.95 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=80.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++..+. .+.+++++|+++.+++.+++++...+.
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~----------~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------------- 129 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIP----------EDGKILAMDINKENYELGLPVIKKAGV--------------------- 129 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSC----------TTCEEEEEESCCHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999999873 368999999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-C-----CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...+..+. + . ..++||+|++... ..+...++++++++|+|||+++
T Consensus 130 -------------------~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv 187 (247)
T 1sui_A 130 -------------------DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIG 187 (247)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEE
T ss_pred -------------------CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEE
Confidence 13566666665432 2 1 1467899887532 3456788999999999999999
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+-+
T Consensus 188 ~d~ 190 (247)
T 1sui_A 188 YDN 190 (247)
T ss_dssp EEC
T ss_pred Eec
Confidence 844
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=108.39 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=77.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..++..+. ...+++++|+++.+++.+++++...+. .++++..+|+..++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~a~D~s~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMK----------NKGKIYAFDVDKMRMKRLKDFVKRMGI-----KIVKPLVKDARKAPEI 325 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCTTCCSSS
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEEEcChhhcchh
Confidence 4799999999999999999873 137899999999999999999987664 13444555544443
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc----------------HHHHHHHH
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR----------------IDKALSEA 142 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~----------------~~~~l~~~ 142 (167)
++.+.||.+.+..+-+. ..+++..++ ...++.++
T Consensus 326 ~~~~~fD~Vl~D~Pcsg------------------------------~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a 375 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTS------------------------------SGTIGKNPELRWRLREDKINEMSQLQRELLESA 375 (450)
T ss_dssp SCSSCEEEEEEECCCCC------------------------------GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHH
T ss_pred hccCCCCEEEEcCCCCC------------------------------CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 33334443333222211 111111111 26789999
Q ss_pred HHhcCCCcEEEEEeecc
Q psy889 143 YRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 143 ~~~LkpgG~l~~~~~~~ 159 (167)
.++|||||.+++++++.
T Consensus 376 ~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 376 ARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp HTTEEEEEEEEEEESCC
T ss_pred HHhcCCCcEEEEEeCCC
Confidence 99999999999977653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-13 Score=102.61 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=80.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++...+.
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 162 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVG----------SSGKVFAYEKREEFAKLAESNLTKWGL--------------------- 162 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTT----------TTCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEECCcCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999998753 367899999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+. +..+.||+|++. .++...+++++.++|+|||.+++.+.+
T Consensus 163 -------------------~~~v~~~~~d~~~~-~~~~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 163 -------------------IERVTIKVRDISEG-FDEKDVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp -------------------GGGEEEECCCGGGC-CSCCSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred -------------------CCCEEEEECCHHHc-ccCCccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 03466666666554 444679998873 466778999999999999999997643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-13 Score=105.12 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=76.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc----cCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF----KVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~d~~~ 76 (167)
.+|||+|||+|.++..+++... +..+++++|+++.+++.|++++...+ .+..
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~-------------- 162 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVG----------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV-------------- 162 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCS--------------
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccc--------------
Confidence 4799999999999999998763 35889999999999999999987532 1000
Q ss_pred CCCCCCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 77 LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.....++.+...|..+. ++.+++||+|++.. +....++.+++++|+|||.|++
T Consensus 163 --------------------~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 163 --------------------EEWPDNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp --------------------SCCCCCEEEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEE
T ss_pred --------------------cccCCceEEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEE
Confidence 00013567777777664 34456799998742 3344588999999999999998
Q ss_pred Eeec
Q psy889 155 LEFS 158 (167)
Q Consensus 155 ~~~~ 158 (167)
...+
T Consensus 218 ~~~~ 221 (336)
T 2b25_A 218 YVVN 221 (336)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-13 Score=109.97 Aligned_cols=129 Identities=8% Similarity=0.099 Sum_probs=80.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
.+|||+|||+|..+..++..+. ...+++++|+++.+++.++++++..+. .++++..+|+..++.
T Consensus 119 ~~VLDl~aGpG~kt~~lA~~~~----------~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv~~~~~D~~~~~~~ 183 (479)
T 2frx_A 119 QRVMDVAAAPGSKTTQISARMN----------NEGAILANEFSASRVKVLHANISRCGI-----SNVALTHFDGRVFGAA 183 (479)
T ss_dssp SEEEESSCTTSHHHHHHHHHTT----------TCSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCCSTTHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHhhhh
Confidence 4799999999999999999874 257899999999999999999987765 235555566555442
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.||.+++..+-+.... + .-+. +.......-++. ........++.+++++|||||+|++++++
T Consensus 184 ~~~~fD~Il~D~PcSg~G~------~-~~~p-d~~~~~~~~~~~------~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 184 VPEMFDAILLDAPCSGEGV------V-RKDP-DALKNWSPESNQ------EIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp STTCEEEEEEECCCCCGGG------G-GTCT-TSSSSCCHHHHH------HHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCCEEEECCCcCCccc------c-cCCH-HHHhhcCHhHHH------HHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3345555555433321100 0 0000 000000000000 00112357899999999999999997764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=103.60 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=79.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+| |+|.++..++... ...+++++|+++.+++.++++++..+.
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~-----------~~~~v~~vDi~~~~l~~a~~~~~~~g~--------------------- 220 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSG-----------LPKRIAVLDIDERLTKFIEKAANEIGY--------------------- 220 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHT-----------CCSEEEEECSCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEEC-CCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999 9999999998754 247899999999999999999887654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCC-CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|... ++. .+++||+|+++..++.. ....++++++++|+|||.+++.+++
T Consensus 221 --------------------~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 221 --------------------EDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp --------------------CCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred --------------------CCEEEEEChhhhhchhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 357777777766 443 34578888886544322 3578899999999999965444544
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 280 ~ 280 (373)
T 2qm3_A 280 R 280 (373)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-13 Score=100.49 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=80.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.|++++...+.
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~--------------------- 122 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLP----------PDGQIIACDQDPNATAIAKKYWQKAGV--------------------- 122 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999998763 267899999999999999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC----CCCCc--cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE----LPIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~--~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...+..+ ++..+ ++||+|++... ..+...+++++.++|+|||++++
T Consensus 123 -------------------~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~ 180 (232)
T 3cbg_A 123 -------------------AEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVI 180 (232)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -------------------CCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEE
Confidence 1346666666432 22222 67999987542 35667889999999999999998
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
.+...
T Consensus 181 ~~~~~ 185 (232)
T 3cbg_A 181 DNVLW 185 (232)
T ss_dssp ECTTG
T ss_pred eCCCc
Confidence 65443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.5e-13 Score=97.55 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=69.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCC-CCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||+|||+|.++..+++.+. . ..+++|+|+|+.. ..+++++..+|+.+.+..
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~----------~~~~~v~gvD~s~~~----------------~~~~v~~~~~d~~~~~~~ 78 (201)
T 2plw_A 25 IILDIGCYPGSWCQVILERTK----------NYKNKIIGIDKKIMD----------------PIPNVYFIQGEIGKDNMN 78 (201)
T ss_dssp EEEEESCTTCHHHHHHHHHTT----------TSCEEEEEEESSCCC----------------CCTTCEEEECCTTTTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHcC----------CCCceEEEEeCCccC----------------CCCCceEEEccccchhhh
Confidence 799999999999999998762 1 4789999999831 012455556665543210
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecc-cC----CC--CCCccchhhHhhhhccccc----ccH-------HHHHHHH
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEAN-AE----EL--PIESDSYSAYTIAFGIRNV----TRI-------DKALSEA 142 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d-~~----~~--~~~~~~~D~v~~~~~~~~~----~~~-------~~~l~~~ 142 (167)
... +..+.... .. .+ .+...+||+|++...+++. .+. ..+++++
T Consensus 79 --~~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~ 140 (201)
T 2plw_A 79 --NIK----------------NINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFM 140 (201)
T ss_dssp --CC---------------------------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --hhc----------------cccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 000 00000000 00 00 0234578999886655542 222 3478999
Q ss_pred HHhcCCCcEEEEEeecc
Q psy889 143 YRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 143 ~~~LkpgG~l~~~~~~~ 159 (167)
+++|||||.|++..+..
T Consensus 141 ~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 141 EQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHEEEEEEEEEEEECS
T ss_pred HHHccCCCEEEEEEeCC
Confidence 99999999999866553
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-13 Score=101.08 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=79.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.+++++...+.
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------------- 110 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALP----------EDGKILCCDVSEEWTNVARKYWKENGL--------------------- 110 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSC----------TTCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEeCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999998763 267999999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C--------------CCc--cchhhHhhhhcccccccHHHHHHHHH
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P--------------IES--DSYSAYTIAFGIRNVTRIDKALSEAY 143 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--------------~~~--~~~D~v~~~~~~~~~~~~~~~l~~~~ 143 (167)
..++.+...|.... + +.. ++||+|++... ......++++++
T Consensus 111 -------------------~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~ 168 (239)
T 2hnk_A 111 -------------------ENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLIL 168 (239)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHH
T ss_pred -------------------CCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHH
Confidence 02355555543321 1 222 67999987643 455678899999
Q ss_pred HhcCCCcEEEEEeec
Q psy889 144 RVLKPGGRFLCLEFS 158 (167)
Q Consensus 144 ~~LkpgG~l~~~~~~ 158 (167)
++|+|||++++.+..
T Consensus 169 ~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 169 KLLKPGGLLIADNVL 183 (239)
T ss_dssp HHEEEEEEEEEECSS
T ss_pred HHcCCCeEEEEEccc
Confidence 999999999996543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-13 Score=106.83 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ .
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~-----------p~~~~~~~D~-~~~~~~a~~------~--------------------- 235 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIF-----------PHLKCTVFDQ-PQVVGNLTG------N--------------------- 235 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTSEEEEEEC-HHHHSSCCC------C---------------------
T ss_pred CEEEEECCCcCHHHHHHHHHC-----------CCCeEEEecc-HHHHhhccc------C---------------------
Confidence 379999999999999999987 3678999998 677755442 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHH--HHHHHHHHhcCC---CcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP---GGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~~~ 155 (167)
.++.+...|+.. +.+ .||+|++..++|++++.. +++++++++|+| ||++++.
T Consensus 236 --------------------~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 236 --------------------ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp --------------------SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred --------------------CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 247777777765 443 499999999999998866 999999999999 9999999
Q ss_pred eecccCC
Q psy889 156 EFSHVNN 162 (167)
Q Consensus 156 ~~~~~~~ 162 (167)
++..++.
T Consensus 293 e~~~~~~ 299 (358)
T 1zg3_A 293 DISIDET 299 (358)
T ss_dssp ECEECTT
T ss_pred EeccCCC
Confidence 8876543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-13 Score=105.64 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ...+++++|+++.+++.+++++...... ..
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~----------------- 147 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHG-----------TVEHCDLVDIDGEVMEQSKQHFPQISRS-LA----------------- 147 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHGG-GG-----------------
T ss_pred CeEEEEcCCCCHHHHHHHhCC-----------CCCEEEEEECCHHHHHHHHHHhHHhhcc-cC-----------------
Confidence 379999999999999998764 2678999999999999999887421100 00
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCC--CccchhhHhhhhcccccccH----HHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI--ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|...... .+++||+|++.......+.. ..++++++++|+|||++++
T Consensus 148 -------------------~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 208 (304)
T 3bwc_A 148 -------------------DPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208 (304)
T ss_dssp -------------------CTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1456666666654332 35678888885443332221 6789999999999999998
Q ss_pred Ee
Q psy889 155 LE 156 (167)
Q Consensus 155 ~~ 156 (167)
..
T Consensus 209 ~~ 210 (304)
T 3bwc_A 209 QG 210 (304)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=96.58 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=78.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+.
T Consensus 93 ~~vldiG~G~G~~~~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------- 138 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV-------------AGEVWTFEAVEEFYKTAQKNLKKFNL--------------------- 138 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCccHHHHHHHHh-------------CCEEEEEecCHHHHHHHHHHHHHcCC---------------------
Confidence 37999999999999999885 36799999999999999998876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+.......||+|++. .++...+++++.++|+|||.+++...
T Consensus 139 -------------------~~~~~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 139 -------------------GKNVKFFNVDFKDAEVPEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp -------------------CTTEEEECSCTTTSCCCTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred -------------------CCcEEEEEcChhhcccCCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 135666666665543244679998862 45667889999999999999999664
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=104.81 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=79.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+ +++.++++++..+.
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g------------~~~V~~vD~s~-~~~~a~~~~~~~~l--------------------- 97 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAG------------ARKIYAVEAST-MAQHAEVLVKSNNL--------------------- 97 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEEECST-HHHHHHHHHHHTTC---------------------
T ss_pred CEEEEcCCCccHHHHHHHhCC------------CCEEEEECCHH-HHHHHHHHHHHcCC---------------------
Confidence 479999999999999988742 46899999996 88999888875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...+.++++.. ++||+|++....+++ ......+.+++++|||||.+++
T Consensus 98 -------------------~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 98 -------------------TDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp -------------------TTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred -------------------CCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 14678888888776544 579999997665544 3466788899999999999985
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.1e-13 Score=104.71 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=78.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.. ++.+++++|+++.+++.+++++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-----------p~~~v~~VEidp~vi~~Ar~~~~~~~---------------------- 137 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-----------PQSRNTVVELDAELARLSREWFDIPR---------------------- 137 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-----------TTCEEEEEESCHHHHHHHHHHSCCCC----------------------
T ss_pred CEEEEEECCcCHHHHHHHHHC-----------CCcEEEEEECCHHHHHHHHHhccccC----------------------
Confidence 489999999999999999876 36789999999999999998764211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccc-ccc---HHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRN-VTR---IDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~-~~~---~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++..|.... ....++||+|++...... .+. ...++++++++|+|||+|++
T Consensus 138 -------------------~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 138 -------------------APRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp -------------------TTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 14566666665443 123467888877432221 111 26789999999999999998
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
...+.
T Consensus 199 ~~~~~ 203 (317)
T 3gjy_A 199 NCGDH 203 (317)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 66543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=97.32 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... +.++++++|+++.+++...+.....
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~----------~~G~V~avD~s~~~l~~l~~~a~~r----------------------- 124 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIE----------LNGKAYGVEFSPRVVRELLLVAQRR----------------------- 124 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHT----------TTSEEEEEECCHHHHHHHHHHHHHC-----------------------
T ss_pred CEEEEEeecCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhc-----------------------
Confidence 5899999999999999999875 4679999999999976554443321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHH-HHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKAL-SEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~ 155 (167)
.++.++..|..... ....+||+|++.... ++...++ ..+.++|||||+|++.
T Consensus 125 --------------------~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 125 --------------------PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp --------------------TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 24556666654321 123579999876432 4555554 4566699999999986
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-13 Score=105.34 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=73.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+. ...++++..+|+......
T Consensus 156 ~VLDlgcGtG~~sl~la~~-------------ga~V~~VD~s~~al~~a~~n~~~~gl---~~~~v~~i~~D~~~~l~~- 218 (332)
T 2igt_A 156 KVLNLFGYTGVASLVAAAA-------------GAEVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDAMKFIQR- 218 (332)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCHHHHHHH-
T ss_pred cEEEcccccCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECcHHHHHHH-
Confidence 7999999999999999873 45899999999999999999876554 111234444443332100
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh----------cccccccHHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF----------GIRNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~----------~~~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
.......||+|++.- .++...+...++.++.++|+|||.
T Consensus 219 -------------------------------~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ 267 (332)
T 2igt_A 219 -------------------------------EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL 267 (332)
T ss_dssp -------------------------------HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred -------------------------------HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcE
Confidence 000023455555421 122345677899999999999999
Q ss_pred EEEEeecc
Q psy889 152 FLCLEFSH 159 (167)
Q Consensus 152 l~~~~~~~ 159 (167)
+++...+.
T Consensus 268 lli~~~~~ 275 (332)
T 2igt_A 268 GLVLTAYS 275 (332)
T ss_dssp EEEEEECC
T ss_pred EEEEECCC
Confidence 87755443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=100.54 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=79.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++++|+++.+++.++++++..+.
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~--------------------- 120 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIP----------DDGKITAIDFDREAYEIGLPFIRKAGV--------------------- 120 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSC----------TTCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999999874 368999999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-C-----CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|..+. + . ..++||+|++.. .......+++++.++|+|||+++
T Consensus 121 -------------------~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv 178 (237)
T 3c3y_A 121 -------------------EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVA 178 (237)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred -------------------CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEE
Confidence 13466666665432 1 1 146789988643 24456788999999999999998
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+-.
T Consensus 179 ~d~ 181 (237)
T 3c3y_A 179 YDN 181 (237)
T ss_dssp EEC
T ss_pred Eec
Confidence 854
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-13 Score=100.78 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=73.8
Q ss_pred CeEEeeecCCCchHHHHHHh---hccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 1 MYILFYLVFPGDIAFRFLNY---VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
.+|||+|||+|..+..+++. +. +..+++++|+++.+++.|+. ..
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~----------~~~~V~gvD~s~~~l~~a~~----~~------------------- 129 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMG----------IDCQVIGIDRDLSRCQIPAS----DM------------------- 129 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTT----------CCCEEEEEESCCTTCCCCGG----GC-------------------
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcC----------CCCEEEEEeCChHHHHHHhc----cC-------------------
Confidence 47999999999999999887 22 36899999999999887761 11
Q ss_pred CCCCCCCceeeeeeccccccCCCCceEEeecccCCC---CCCc-cchhhHhhhhcccccccHHHHHHHHHH-hcCCCcEE
Q psy889 78 PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIES-DSYSAYTIAFGIRNVTRIDKALSEAYR-VLKPGGRF 152 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l 152 (167)
.++.++.+|..+. +... .+||+|++... + .+...++.++++ +|||||+|
T Consensus 130 -----------------------~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~l 183 (236)
T 2bm8_A 130 -----------------------ENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYF 183 (236)
T ss_dssp -----------------------TTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEE
T ss_pred -----------------------CceEEEECcchhHHHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEE
Confidence 3566777766653 3222 36899887543 2 367789999997 99999999
Q ss_pred EEEee
Q psy889 153 LCLEF 157 (167)
Q Consensus 153 ~~~~~ 157 (167)
++.++
T Consensus 184 v~~d~ 188 (236)
T 2bm8_A 184 IIEDM 188 (236)
T ss_dssp EECSC
T ss_pred EEEeC
Confidence 99654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=100.49 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=75.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.. . ..+++++|+|+.+++.|+++....+. .+++++..+|.... ++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~-~-----------~~~v~~vDis~~al~~A~~n~~~~~l----~~~v~~~~~D~~~~-~~ 187 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF-S-----------DAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKGEFLEP-FK 187 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH-S-----------SCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEESSTTGG-GG
T ss_pred CEEEEEeCchhHHHHHHHHC-C-----------CCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECcchhh-cc
Confidence 37999999999999999986 4 68899999999999999999887654 12355555555441 11
Q ss_pred CCCC---ceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHH-HhcCCCcEEEEEe
Q psy889 81 SDSY---SAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~f---d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~ 156 (167)
+.| |.+++.++...... ... ..+.. .....+. .-.+...+++++. +.|+|||.+++ +
T Consensus 188 -~~f~~~D~IvsnPPyi~~~~--------~l~-~~v~~---ep~~al~-----~~~dgl~~~~~i~~~~l~pgG~l~~-e 248 (284)
T 1nv8_A 188 -EKFASIEMILSNPPYVKSSA--------HLP-KDVLF---EPPEALF-----GGEDGLDFYREFFGRYDTSGKIVLM-E 248 (284)
T ss_dssp -GGTTTCCEEEECCCCBCGGG--------SCT-TSCCC---SCHHHHB-----CTTTSCHHHHHHHHHCCCTTCEEEE-E
T ss_pred -cccCCCCEEEEcCCCCCccc--------ccC-hhhcc---CcHHHhc-----CCCcHHHHHHHHHHhcCCCCCEEEE-E
Confidence 244 54444433321000 000 00000 0000000 0112236788999 99999999998 6
Q ss_pred eccc
Q psy889 157 FSHV 160 (167)
Q Consensus 157 ~~~~ 160 (167)
+...
T Consensus 249 ~~~~ 252 (284)
T 1nv8_A 249 IGED 252 (284)
T ss_dssp CCTT
T ss_pred ECch
Confidence 5543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-13 Score=102.36 Aligned_cols=97 Identities=19% Similarity=0.097 Sum_probs=65.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.++++....... .
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g------------~~~V~gvDis~~ml~~a~~~~~~~~~~--~----------------- 87 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNG------------AKLVYALDVGTNQLAWKIRSDERVVVM--E----------------- 87 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEECSSCCCCCHHHHTCTTEEEE--C-----------------
T ss_pred CEEEEEccCCCHHHHHHHhcC------------CCEEEEEcCCHHHHHHHHHhCcccccc--c-----------------
Confidence 479999999999999998842 358999999999999987654321110 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEee-cccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLE-ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+.. .+.....+....||+++++. ..++++++++|||||++++.
T Consensus 88 -------------------~~~~~~~~~~~~~~~~~d~~~~D~v~~~l--------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 88 -------------------QFNFRNAVLADFEQGRPSFTSIDVSFISL--------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp -------------------SCCGGGCCGGGCCSCCCSEEEECCSSSCG--------GGTHHHHHHHSCTTCEEEEE
T ss_pred -------------------cceEEEeCHhHcCcCCCCEEEEEEEhhhH--------HHHHHHHHHhccCCCEEEEE
Confidence 01122222 22222122345677766542 77999999999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-13 Score=110.11 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=83.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
++|||+|||+|..+..++..+. ..++++++|+++.+++.++++++..+. . +++..+|+..++ +
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~----------~~g~V~AvDis~~~l~~a~~n~~r~G~-----~-v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMG----------GKGLLLANEVDGKRVRGLLENVERWGA-----P-LAVTQAPPRALAEA 166 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHCC-----C-CEEECSCHHHHHHH
T ss_pred CEEEEEcCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC-----e-EEEEECCHHHhhhh
Confidence 4899999999999999998874 247899999999999999999988775 1 566666766654 3
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.||.+++..+-+....... + .+.......-++- ........+++++.++|||||+|++++++
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr-------~-pd~~~~~~~~~~~------~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRK-------D-REAARHWGPSAPK------RMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTT-------C-TTSGGGCCTTHHH------HHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccccCCEEEECCCcCCcccccc-------C-hHHhhhcCHHHHH------HHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4556676665544332110000 0 0000000000000 00123478899999999999999987654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.8e-13 Score=98.92 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.+++++...+.
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------------- 119 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALP----------ADGRVVTCEVDAQPPELGRPLWRQAEA--------------------- 119 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCSHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEcCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHCCC---------------------
Confidence 3799999999999999998763 267999999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-CC----ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+. + .. .++||+|++... ......+++++.++|+|||.+++
T Consensus 120 -------------------~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~ 177 (229)
T 2avd_A 120 -------------------EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAV 177 (229)
T ss_dssp -------------------TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEE
Confidence 13566666655332 1 11 156899887432 34567889999999999999998
Q ss_pred Eeec
Q psy889 155 LEFS 158 (167)
Q Consensus 155 ~~~~ 158 (167)
.+..
T Consensus 178 ~~~~ 181 (229)
T 2avd_A 178 LRVL 181 (229)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 6543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=97.95 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=69.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+ ..+++++|+++. .
T Consensus 69 ~~vLDiG~G~G~~~~~l----------------~~~v~~~D~s~~------------~---------------------- 98 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSI----------------RNPVHCFDLASL------------D---------------------- 98 (215)
T ss_dssp SCEEEETCTTCHHHHHC----------------CSCEEEEESSCS------------S----------------------
T ss_pred CeEEEECCcCCHHHHHh----------------hccEEEEeCCCC------------C----------------------
Confidence 37999999999987655 245999999986 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
+.+...|....++.+++||+|++..++++ .+...++++++++|+|||.+++.++..
T Consensus 99 ----------------------~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 99 ----------------------PRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp ----------------------TTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred ----------------------ceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 22345566666666788999999988874 889999999999999999999988764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=102.98 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=66.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.+.++-.+... +..
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~g------------a~~V~aVDvs~~mL~~a~r~~~rv~~---------~~~--------- 136 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNG------------AKLVYAVDVGTNQLVWKLRQDDRVRS---------MEQ--------- 136 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEECSSSSCSCHHHHTCTTEEE---------ECS---------
T ss_pred cEEEecCCCccHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHhCcccce---------ecc---------
Confidence 379999999999999988742 46899999999999885432111000 000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++... ..+.+ +..+||++++..++++ +..+|.+++++|+|||.++++
T Consensus 137 --------------------~ni~~l--~~~~l--~~~~fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 137 --------------------YNFRYA--EPVDF--TEGLPSFASIDVSFIS---LNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp --------------------CCGGGC--CGGGC--TTCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEE
T ss_pred --------------------cCceec--chhhC--CCCCCCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEE
Confidence 011111 11112 2235899888766553 478999999999999999997
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-13 Score=101.16 Aligned_cols=79 Identities=4% Similarity=-0.089 Sum_probs=63.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC---C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---P 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l---~ 78 (167)
+|||+|||+|.++..++.... +.+++++|+|+.+++.|++++...+. .+++++..+|+... +
T Consensus 68 ~vLDlG~G~G~~~~~la~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~ 132 (254)
T 2h00_A 68 RGIDIGTGASCIYPLLGATLN-----------GWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDA 132 (254)
T ss_dssp EEEEESCTTTTHHHHHHHHHH-----------CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTT
T ss_pred EEEEeCCChhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHcCC----CccEEEEEcchhhhhhhh
Confidence 799999999999999988763 68899999999999999999876543 23588899987762 3
Q ss_pred CC---CCCCceeeeeecccc
Q psy889 79 IE---SDSYSAYTIAFGIRN 95 (167)
Q Consensus 79 ~~---~~~fd~~~~~~~~~~ 95 (167)
++ .+.||.+.+.++...
T Consensus 133 ~~~~~~~~fD~i~~npp~~~ 152 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFFA 152 (254)
T ss_dssp STTCCSCCBSEEEECCCCC-
T ss_pred hhcccCCcccEEEECCCCcc
Confidence 44 268999998877653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=102.31 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=76.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ...+++++|+++.+++.+++++..........
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~---------------- 131 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHP-----------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD---------------- 131 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTST-----------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC----------------
T ss_pred CeEEEEcCCcCHHHHHHHhcC-----------CCCEEEEEECCHHHHHHHHHHhHhhccccccC----------------
Confidence 379999999999999998865 26789999999999999998875321000001
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccc---cc--c--HHHHHHHHHHhcCCCcEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN---VT--R--IDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~---~~--~--~~~~l~~~~~~LkpgG~l 152 (167)
.++.+...|... ++...++||+|++....++ -+ . ...++++++++|+|||.+
T Consensus 132 --------------------~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l 191 (314)
T 1uir_A 132 --------------------PRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM 191 (314)
T ss_dssp --------------------TTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEE
T ss_pred --------------------CceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEE
Confidence 356666666544 2223456888877554333 11 1 368899999999999999
Q ss_pred EEEe
Q psy889 153 LCLE 156 (167)
Q Consensus 153 ~~~~ 156 (167)
++..
T Consensus 192 v~~~ 195 (314)
T 1uir_A 192 GMQT 195 (314)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=107.62 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=79.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.. ..+++++|+|+ +++.|++++...+.
T Consensus 160 ~~VLDiGcGtG~la~~la~~~------------~~~V~gvD~s~-~l~~A~~~~~~~gl--------------------- 205 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAG------------ARKIYAVEAST-MAQHAEVLVKSNNL--------------------- 205 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTT------------CSEEEEEECHH-HHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCcccHHHHHHHHcC------------CCEEEEEEcHH-HHHHHHHHHHHcCC---------------------
Confidence 479999999999999888732 56899999998 99999988876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+++.. +.||+|++...++++ ......+.+++++|||||.+++
T Consensus 206 -------------------~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 206 -------------------TDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp -------------------TTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred -------------------CCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 14688888888776543 579999997654443 3456677889999999999985
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=107.35 Aligned_cols=127 Identities=12% Similarity=0.017 Sum_probs=81.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
++|||+|||+|..+..++..+. ...+++++|+++.+++.++++++..+. .++++..+|+..++ .
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~----------~~g~V~AvDis~~rl~~~~~n~~r~g~-----~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMK----------GKGLLVTNEIFPKRAKILSENIERWGV-----SNAIVTNHAPAELVPH 171 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHT----------TCSEEEEECSSHHHHHHHHHHHHHHTC-----SSEEEECCCHHHHHHH
T ss_pred CEEEEECCCcCHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhhh
Confidence 4899999999999999998874 257899999999999999999988775 23555566655543 2
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh--hccc-ccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGIR-NVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+++..+-+..... . ...|..... ..+. .......++.++.++|||||+|++++
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~-----------r------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMF-----------R------KDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGT-----------T------TCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCEEEECCCCCCcccc-----------c------cCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34455655544332211000 0 000111000 0000 01223578999999999999999876
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
++.
T Consensus 235 Cs~ 237 (456)
T 3m4x_A 235 CTF 237 (456)
T ss_dssp SCC
T ss_pred eec
Confidence 643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=102.93 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=76.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc--ccCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|||+|||+|.++..++++. ...+++++|+|+.+++.|++++... +. .
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~-----------~~~~V~~VDis~~~l~~Ar~~~~~~~~gl---~--------------- 172 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHA-----------SIEQIDMCEIDKMVVDVSKQFFPDVAIGY---E--------------- 172 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHGGG---G---------------
T ss_pred CEEEEECCCccHHHHHHHHcC-----------CCCEEEEEECCHHHHHHHHHHHHhhcccc---C---------------
Confidence 379999999999999998865 3678999999999999999987542 11 0
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcc--ccccc--HHHHHHHHHHhcCCCcEE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGI--RNVTR--IDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~--~~~~~--~~~~l~~~~~~LkpgG~l 152 (167)
..++.+...|.... ....++||+|++.... +.... ...++++++++|+|||.|
T Consensus 173 ---------------------~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~l 231 (334)
T 1xj5_A 173 ---------------------DPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV 231 (334)
T ss_dssp ---------------------STTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred ---------------------CCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEE
Confidence 13566666665432 1234578888874331 11111 368899999999999999
Q ss_pred EEE
Q psy889 153 LCL 155 (167)
Q Consensus 153 ~~~ 155 (167)
++.
T Consensus 232 v~~ 234 (334)
T 1xj5_A 232 CTQ 234 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 984
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-12 Score=101.27 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=78.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|-+++.++++. ..+++++|.|+ +++.|++.++..+.
T Consensus 86 ~VLDvG~GtGiLs~~Aa~aG------------A~~V~ave~s~-~~~~a~~~~~~n~~---------------------- 130 (376)
T 4hc4_A 86 TVLDVGAGTGILSIFCAQAG------------ARRVYAVEASA-IWQQAREVVRFNGL---------------------- 130 (376)
T ss_dssp EEEEETCTTSHHHHHHHHTT------------CSEEEEEECST-THHHHHHHHHHTTC----------------------
T ss_pred EEEEeCCCccHHHHHHHHhC------------CCEEEEEeChH-HHHHHHHHHHHcCC----------------------
Confidence 69999999999998887754 45799999986 88999988876554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh---cccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++..+.+++..+ ..+|+|++.. .+.+...+..++....++|||||.++-
T Consensus 131 ------------------~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 131 ------------------EDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp ------------------TTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ------------------CceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 25688888888877654 5799998843 344455678888888999999999874
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=95.23 Aligned_cols=103 Identities=11% Similarity=-0.052 Sum_probs=80.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||+|.++..++... +..+++++|+++.+++.|+++++..+.
T Consensus 24 ~VlDIGtGsG~l~i~la~~~-----------~~~~V~AvDi~~~al~~A~~N~~~~gl---------------------- 70 (230)
T 3lec_A 24 RLLDVGSDHAYLPIFLLQMG-----------YCDFAIAGEVVNGPYQSALKNVSEHGL---------------------- 70 (230)
T ss_dssp EEEEETCSTTHHHHHHHHTT-----------CEEEEEEEESSHHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEECCchHHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 79999999999999998865 256899999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+...+...||+|++.... -..+..++.+..+.|+++|+|++...
T Consensus 71 ------------------~~~I~~~~gD~l~~~~~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 71 ------------------TSKIDVRLANGLSAFEEADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp ------------------TTTEEEEECSGGGGCCGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ------------------CCcEEEEECchhhccccccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEEECC
Confidence 246888888876654443469988753321 13467788888899999999988654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-12 Score=103.66 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=78.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... ..+++++|+++.+++.+++++...+. ++++..+|+..++
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAP-----------EAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQW 310 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-----------TCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHH
T ss_pred CeEEEECCCchHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHHHHHcCC------CeEEEeCchhhchhh
Confidence 4799999999999999999773 57899999999999999999887654 2345555555443
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh--hcc-cccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGI-RNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
++.+.||.+.+..+-+..... ... .|.-... ..+ ........++.++.++|||||+++++
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~-----------~~~------p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVI-----------RRH------PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGT-----------TTC------TTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCCCEEEEeCCCCccccc-----------CCC------cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 333445544443322111000 000 0000000 000 00112357889999999999999997
Q ss_pred eecc
Q psy889 156 EFSH 159 (167)
Q Consensus 156 ~~~~ 159 (167)
+++.
T Consensus 374 tcs~ 377 (429)
T 1sqg_A 374 TCSV 377 (429)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=100.14 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ...+++++|+++.+++.+++++..... ....
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~---------------- 143 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHD-----------SVEKAILCEVDGLVIEAARKYLKQTSC-GFDD---------------- 143 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTST-----------TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGC----------------
T ss_pred CEEEEEcCCcCHHHHHHHhcC-----------CCCEEEEEECCHHHHHHHHHHhHhhcc-ccCC----------------
Confidence 379999999999999998865 267899999999999999998753210 0001
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+...|... ++...++||+|++.....+.. ....++++++++|+|||.+++
T Consensus 144 --------------------~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 144 --------------------PRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp --------------------TTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------------------CceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 345666665433 222245678777632211111 236788999999999999998
Q ss_pred Ee
Q psy889 155 LE 156 (167)
Q Consensus 155 ~~ 156 (167)
..
T Consensus 204 ~~ 205 (296)
T 1inl_A 204 ET 205 (296)
T ss_dssp EC
T ss_pred Ec
Confidence 53
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-12 Score=94.85 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=78.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||+|.++..++... +..+++++|+++.+++.|++++...+.
T Consensus 18 ~VlDIGtGsG~l~i~la~~~-----------~~~~V~avDi~~~al~~A~~N~~~~gl---------------------- 64 (225)
T 3kr9_A 18 ILLDVGSDHAYLPIELVERG-----------QIKSAIAGEVVEGPYQSAVKNVEAHGL---------------------- 64 (225)
T ss_dssp EEEEETCSTTHHHHHHHHTT-----------SEEEEEEEESSHHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEeCCCcHHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 79999999999999999865 356899999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+ ++. ...||+|+.... .-..+..++.+..+.|+++|+|++...
T Consensus 65 ------------------~~~i~~~~~d~l~~l~~-~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 65 ------------------KEKIQVRLANGLAAFEE-TDQVSVITIAGM--GGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp ------------------TTTEEEEECSGGGGCCG-GGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred ------------------CceEEEEECchhhhccc-CcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 1467888887643 322 125998876432 112367889999999999999988543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-12 Score=104.29 Aligned_cols=108 Identities=8% Similarity=0.030 Sum_probs=72.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++++..+. .+
T Consensus 214 ~~VLDl~cGtG~~sl~la~~g------------a~~V~~vD~s~~al~~A~~N~~~n~~----~~--------------- 262 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGG------------AMATTSVDLAKRSRALSLAHFEANHL----DM--------------- 262 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTT------------BSEEEEEESCTTHHHHHHHHHHHTTC----CC---------------
T ss_pred CeEEEEeeccCHHHHHHHHCC------------CCEEEEEECCHHHHHHHHHHHHHcCC----Cc---------------
Confidence 379999999999999998732 34799999999999999999876554 11
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C---CCccchhhHhhh---------hcccccccHHHHHHHHHHhcC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P---IESDSYSAYTIA---------FGIRNVTRIDKALSEAYRVLK 147 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~---~~~~~~D~v~~~---------~~~~~~~~~~~~l~~~~~~Lk 147 (167)
.++.+...|..+. + .....||+|++. ...........++.++.++|+
T Consensus 263 --------------------~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~ 322 (385)
T 2b78_A 263 --------------------ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS 322 (385)
T ss_dssp --------------------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE
T ss_pred --------------------cceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 0344444443321 1 011245555541 111223445678889999999
Q ss_pred CCcEEEEEeecc
Q psy889 148 PGGRFLCLEFSH 159 (167)
Q Consensus 148 pgG~l~~~~~~~ 159 (167)
|||.+++.+...
T Consensus 323 pgG~l~~~~~~~ 334 (385)
T 2b78_A 323 ENGLIIASTNAA 334 (385)
T ss_dssp EEEEEEEEECCT
T ss_pred CCcEEEEEeCCC
Confidence 999999866443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=95.07 Aligned_cols=103 Identities=12% Similarity=-0.031 Sum_probs=79.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+++.+++.|+++++..+.
T Consensus 24 ~VlDIGtGsG~l~i~la~~~-----------~~~~V~avDi~~~al~~A~~N~~~~gl---------------------- 70 (244)
T 3gnl_A 24 RIADIGSDHAYLPCFAVKNQ-----------TASFAIAGEVVDGPFQSAQKQVRSSGL---------------------- 70 (244)
T ss_dssp EEEEETCSTTHHHHHHHHTT-----------SEEEEEEEESSHHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEECCccHHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 79999999999999998865 256899999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...|..+...+...||+|++...- -..+..++.+..+.|+++|+|++...
T Consensus 71 ------------------~~~I~v~~gD~l~~~~~~~~~D~IviagmG--g~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 71 ------------------TEQIDVRKGNGLAVIEKKDAIDTIVIAGMG--GTLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp ------------------TTTEEEEECSGGGGCCGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ------------------CceEEEEecchhhccCccccccEEEEeCCc--hHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 145788888876544333359988763321 13467788888999999999888553
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-12 Score=101.53 Aligned_cols=108 Identities=13% Similarity=0.218 Sum_probs=74.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ...+++++|+|+.+++.+++++..... ....
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~---------------- 169 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYK-----------SVENIDICEIDETVIEVSKIYFKNISC-GYED---------------- 169 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGS----------------
T ss_pred CEEEEEcCCccHHHHHHHHcC-----------CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCC----------------
Confidence 379999999999999998764 267899999999999999988754210 0001
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccc--cccH--HHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN--VTRI--DKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~--~~~~--~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..+. +..+++||+|++...... .... ..++++++++|+|||.+++.
T Consensus 170 --------------------~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 170 --------------------KRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp --------------------TTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3466666654331 122356788876432111 1111 68899999999999999984
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 230 ~ 230 (321)
T 2pt6_A 230 C 230 (321)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-12 Score=100.33 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=74.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc--ccCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|||+|||+|.++..++++. ...+++++|+++.+++.+++++... +. .
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~i~~ar~~~~~~~~~~---~--------------- 147 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHP-----------SVESVVQCEIDEDVIQVSKKFLPGMAIGY---S--------------- 147 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHGGG---G---------------
T ss_pred CEEEEECCCchHHHHHHHHcC-----------CCCEEEEEECCHHHHHHHHHHhHHhhccc---C---------------
Confidence 379999999999999998864 2578999999999999999987542 11 0
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|... ++...++||+|++.......+ ....++++++++|+|||.++
T Consensus 148 ---------------------~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 148 ---------------------SSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp ---------------------CTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEE
Confidence 1356666666543 222346688888744322111 13568999999999999999
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+..
T Consensus 207 ~~~ 209 (304)
T 2o07_A 207 CQG 209 (304)
T ss_dssp EEE
T ss_pred Eec
Confidence 854
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=98.84 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=75.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ...+++++|+++.+++.+++++..... ....
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vEid~~~v~~ar~~~~~~~~-~~~~---------------- 128 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHP-----------SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDD---------------- 128 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCT-----------TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTS----------------
T ss_pred CEEEEECCchHHHHHHHHhCC-----------CCceEEEEECCHHHHHHHHHHhHhhcc-ccCC----------------
Confidence 379999999999999998764 257899999999999999998754210 0011
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|... ++....+||+|++.......+ ....++++++++|+|||.+++.
T Consensus 129 --------------------~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 129 --------------------PRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp --------------------TTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 355666665443 222245688887743322111 1367899999999999999885
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 189 ~ 189 (275)
T 1iy9_A 189 T 189 (275)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-12 Score=102.21 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=72.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++++. +..+++++|+++.+++.|++++..... ....
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~i~~Ar~~~~~~~~-~~~~---------------- 161 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHE-----------SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSH---------------- 161 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCT-----------TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGC----------------
T ss_pred CEEEEEcCCcCHHHHHHHHcC-----------CCCEEEEEECCHHHHHHHHHHHHHhcc-ccCC----------------
Confidence 379999999999999998865 367999999999999999988753210 0001
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccc--cH--HHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT--RI--DKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~--~~--~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|... ++...++||+|++......-+ .. ..++++++++|+|||.+++.
T Consensus 162 --------------------~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 162 --------------------PKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp --------------------TTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred --------------------CCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 356666665543 222345688887643221111 11 67889999999999999984
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 222 ~ 222 (314)
T 2b2c_A 222 G 222 (314)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-12 Score=99.37 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=76.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++++. ...+++++|+++.+++.+++++...... ..
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~-----------~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~----------------- 130 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYK-----------SVENIDICEIDETVIEVSKIYFKNISCG-YE----------------- 130 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCTTTSGG-GG-----------------
T ss_pred CeEEEEeCCcCHHHHHHHHcC-----------CCCEEEEEECCHHHHHHHHHHhHHhccc-cC-----------------
Confidence 379999999999999998764 3678999999999999999876532100 00
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccc--ccH--HHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNV--TRI--DKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~--~~~--~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|.... +...++||+|++....... ... ..++++++++|+|||.+++.
T Consensus 131 -------------------~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 131 -------------------DKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp -------------------STTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------CCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 14566666665432 2224678888874332221 122 68899999999999999985
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 192 ~ 192 (283)
T 2i7c_A 192 C 192 (283)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-12 Score=91.43 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=66.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++..... +.....+..+++++|+++.. ..
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~--~~~~~~~~~~v~~vD~s~~~-----------~~--------------------- 69 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAA--GTDPSSPVGFVLGVDLLHIF-----------PL--------------------- 69 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTT--CCCTTSCCCEEEEECSSCCC-----------CC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHHhccc--cccccCCCceEEEEechhcc-----------cC---------------------
Confidence 479999999999999999876310 00000012789999999831 01
Q ss_pred CCCCceeeeeeccccccCCCCceEEe-ecccCCCC--------CCccchhhHhhhhccc----ccccH-------HHHHH
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFL-EANAEELP--------IESDSYSAYTIAFGIR----NVTRI-------DKALS 140 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~~~~~D~v~~~~~~~----~~~~~-------~~~l~ 140 (167)
.++.+. ..|..... ....+||+|++...++ +..+. ..+++
T Consensus 70 --------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 129 (196)
T 2nyu_A 70 --------------------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLS 129 (196)
T ss_dssp --------------------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHH
Confidence 123333 33433221 2234688888754332 22222 57899
Q ss_pred HHHHhcCCCcEEEEEeeccc
Q psy889 141 EAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 141 ~~~~~LkpgG~l~~~~~~~~ 160 (167)
+++++|||||.+++..+...
T Consensus 130 ~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 130 VTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp HHHHHEEEEEEEEEEECCSG
T ss_pred HHHHHhcCCCEEEEEecCCc
Confidence 99999999999999877544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=94.02 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=61.1
Q ss_pred eeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCC---C
Q psy889 40 ADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI---E 116 (167)
Q Consensus 40 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~ 116 (167)
+|+|+.|++.++++.. .++.+...|+..++. .
T Consensus 26 vD~s~~ml~~a~~~~~---------------------------------------------~~~~~~~~d~~~~~~~~~~ 60 (176)
T 2ld4_A 26 VEALKGLVDKLQALTG---------------------------------------------NEGRVSVENIKQLLQSAHK 60 (176)
T ss_dssp HHHHHHHHHHHHHHTT---------------------------------------------TTSEEEEEEGGGGGGGCCC
T ss_pred eeCCHHHHHHHHHhcc---------------------------------------------cCcEEEEechhcCccccCC
Confidence 8999999999998753 235666777776665 6
Q ss_pred ccchhhHhhhhccccc-ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 117 SDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 117 ~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+++||+|++..+++++ ++...++++++++|||||+|++.+
T Consensus 61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 7889999999999999 899999999999999999999954
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-12 Score=103.51 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=74.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+. .+++++..+|+.+....
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g------------~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~ 282 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAG------------ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEK 282 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHH
Confidence 479999999999999998742 35899999999999999999876543 11344444444332100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh---------cccccccHHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---------GIRNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
.......||+|++.- ..........++.++.++|+|||.
T Consensus 283 --------------------------------~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 330 (396)
T 2as0_A 283 --------------------------------LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 330 (396)
T ss_dssp --------------------------------HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred --------------------------------HHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 000123345544421 112235567889999999999999
Q ss_pred EEEEeecc
Q psy889 152 FLCLEFSH 159 (167)
Q Consensus 152 l~~~~~~~ 159 (167)
+++++++.
T Consensus 331 lv~~~~~~ 338 (396)
T 2as0_A 331 LVTCSCSQ 338 (396)
T ss_dssp EEEEECCT
T ss_pred EEEEECCC
Confidence 99877654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-12 Score=98.48 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=72.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++ . ..+++++|+++.+++.+++++ .... ... ...+
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~-~-----------~~~v~~vDid~~~i~~ar~~~-~~~~-~l~------~~~~------- 129 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQH-D-----------VDEVIMVEIDEDVIMVSKDLI-KIDN-GLL------EAML------- 129 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTS-C-----------CSEEEEEESCHHHHHHHHHHT-CTTT-THH------HHHH-------
T ss_pred CeEEEEcCCcCHHHHHHHhC-C-----------CCEEEEEECCHHHHHHHHHHH-hhcc-ccc------cccc-------
Confidence 37999999999999999886 3 578999999999999999876 2200 000 0000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccc--cc--HHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNV--TR--IDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~--~~--~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.....++.+...|..+. .. .+.||+|++......- .. ...++++++++|+|||.+++.
T Consensus 130 ----------------~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 130 ----------------NGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp ----------------TTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------cCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 00013556666654331 11 4568888774432111 11 267889999999999999985
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 193 ~ 193 (281)
T 1mjf_A 193 A 193 (281)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-12 Score=103.17 Aligned_cols=108 Identities=24% Similarity=0.205 Sum_probs=73.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+. .++++..+|+.+....
T Consensus 212 ~VLDlg~G~G~~~~~la~~-------------~~~v~~vD~s~~~~~~a~~n~~~n~~-----~~~~~~~~d~~~~~~~- 272 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALG-------------FREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLRR- 272 (382)
T ss_dssp EEEEETCTTTHHHHHHHHH-------------EEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHHH-
T ss_pred eEEEeeeccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEECCHHHHHHH-
Confidence 7999999999999999885 35799999999999999999876554 1244444444332100
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh---------cccccccHHHHHHHHHHhcCCCcEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---------GIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.......||+|++.- ..........++.++.++|+|||.+
T Consensus 273 -------------------------------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 321 (382)
T 1wxx_A 273 -------------------------------LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGIL 321 (382)
T ss_dssp -------------------------------HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred -------------------------------HHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 000022345444411 1112345678899999999999999
Q ss_pred EEEeecc
Q psy889 153 LCLEFSH 159 (167)
Q Consensus 153 ~~~~~~~ 159 (167)
++.+.+.
T Consensus 322 ~~~~~~~ 328 (382)
T 1wxx_A 322 ATASCSH 328 (382)
T ss_dssp EEEECCT
T ss_pred EEEECCC
Confidence 9977654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-12 Score=101.91 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=69.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++ . .+++|+|+++ ++..++++ .. +
T Consensus 84 ~~VLDlGcGtG~~s~~la~-------------~-~~V~gVD~s~-m~~~a~~~----~~---~----------------- 124 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAAS-------------Q-PNVREVKAYT-LGTSGHEK----PR---L----------------- 124 (276)
T ss_dssp EEEEEESCTTCHHHHHHHT-------------S-TTEEEEEEEC-CCCTTSCC----CC---C-----------------
T ss_pred CEEEEeccCCCHHHHHHHH-------------c-CCEEEEECch-hhhhhhhc----hh---h-----------------
Confidence 3799999999999999887 3 5699999998 53322211 00 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEe--ecccCCCCCCccchhhHhhhhcccccc----c-H--HHHHHHHHHhcCCCc-
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVT----R-I--DKALSEAYRVLKPGG- 150 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~v~~~~~~~~~~----~-~--~~~l~~~~~~LkpgG- 150 (167)
.. ..+.++.+. ..|...++ +.+||+|+|..+ +... + . ..++..+.++|||||
T Consensus 125 ~~---------------~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~ 186 (276)
T 2wa2_A 125 VE---------------TFGWNLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQG 186 (276)
T ss_dssp CC---------------CTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hh---------------hcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCC
Confidence 00 000146666 67776654 567999998665 2221 1 1 137899999999999
Q ss_pred -EEEEEeecccCC
Q psy889 151 -RFLCLEFSHVNN 162 (167)
Q Consensus 151 -~l~~~~~~~~~~ 162 (167)
.|++..++ ++.
T Consensus 187 ~~~v~~~~~-~~~ 198 (276)
T 2wa2_A 187 CGFCVKVLN-PYS 198 (276)
T ss_dssp CEEEEEESC-CCS
T ss_pred cEEEEEeCC-CCc
Confidence 99987776 444
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=94.08 Aligned_cols=104 Identities=10% Similarity=0.095 Sum_probs=80.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++++..+.
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g------------~~~V~avD~np~a~~~~~~N~~~N~v--------------------- 173 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYG------------KAKVIAIEKDPYTFKFLVENIHLNKV--------------------- 173 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHT------------CCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCcCcHHHHHHHHhc------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999998754 46899999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..+++. .+.||.|++.. .+.....+..+.+.||+||.+.+.++.+.
T Consensus 174 -------------------~~~v~~~~~D~~~~~~-~~~~D~Vi~~~----p~~~~~~l~~a~~~lk~gG~ih~~~~~~e 229 (278)
T 3k6r_A 174 -------------------EDRMSAYNMDNRDFPG-ENIADRILMGY----VVRTHEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp -------------------TTTEEEECSCTTTCCC-CSCEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred -------------------CCcEEEEeCcHHHhcc-ccCCCEEEECC----CCcHHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 1456777777766543 46688877643 23345677788899999999988776644
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
+
T Consensus 230 ~ 230 (278)
T 3k6r_A 230 K 230 (278)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=106.50 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=74.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-CCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-l~~ 79 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++++..+. ...++++..+|+.+ ++.
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~g------------a~~V~aVD~s~~al~~a~~N~~~ngl---~~~~v~~i~~D~~~~l~~ 605 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGG------------ARSTTTVDMSRTYLEWAERNLRLNGL---TGRAHRLIQADCLAWLRE 605 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTC---CSTTEEEEESCHHHHHHH
T ss_pred CcEEEeeechhHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHh
Confidence 379999999999999988732 34699999999999999999976654 11244555555443 222
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.||.+.+.++... ..... ..++....+...++.++.++|+|||+|++....
T Consensus 606 ~~~~fD~Ii~DPP~f~-------------------~~~~~------~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 606 ANEQFDLIFIDPPTFS-------------------NSKRM------EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCCCEEEEEECCCSBC--------------------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCccEEEECCcccc-------------------CCccc------hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2233443333222110 00000 001233456778899999999999999975533
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-12 Score=100.32 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=69.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++ . .+++|+|+++ ++..++++ .. +
T Consensus 76 ~~VLDlGcGtG~~s~~la~-------------~-~~V~gvD~s~-m~~~a~~~----~~---~----------------- 116 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAAS-------------R-PHVMDVRAYT-LGVGGHEV----PR---I----------------- 116 (265)
T ss_dssp EEEEEESCTTSHHHHHHHT-------------S-TTEEEEEEEC-CCCSSCCC----CC---C-----------------
T ss_pred CEEEEeCcCCCHHHHHHHH-------------c-CcEEEEECch-hhhhhhhh----hh---h-----------------
Confidence 3799999999999998887 3 5699999998 53222110 00 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEe--ecccCCCCCCccchhhHhhhhcccccc----cHH---HHHHHHHHhcCCCc-
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVT----RID---KALSEAYRVLKPGG- 150 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~v~~~~~~~~~~----~~~---~~l~~~~~~LkpgG- 150 (167)
.. ..+.++.+. ..|...++ +.+||+|+|..+ +... +.. .+|..++++|||||
T Consensus 117 ~~---------------~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~ 178 (265)
T 2oxt_A 117 TE---------------SYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPS 178 (265)
T ss_dssp CC---------------BTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hh---------------ccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCC
Confidence 00 000146666 67776654 567999998655 2221 111 37899999999999
Q ss_pred -EEEEEeecccCC
Q psy889 151 -RFLCLEFSHVNN 162 (167)
Q Consensus 151 -~l~~~~~~~~~~ 162 (167)
.|++..++ +..
T Consensus 179 ~~fv~kv~~-~~~ 190 (265)
T 2oxt_A 179 ADFVVKVLC-PYS 190 (265)
T ss_dssp CEEEEEESC-TTS
T ss_pred eEEEEEeCC-CCC
Confidence 99997777 543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=99.95 Aligned_cols=106 Identities=17% Similarity=0.054 Sum_probs=71.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.. +..++++|+|+.+++.++++++..+. ..++..+|+.+..
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~-------------ga~V~avDis~~al~~a~~n~~~ng~------~~~~~~~D~~~~l-- 274 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARK-------------GAYALAVDKDLEALGVLDQAALRLGL------RVDIRHGEALPTL-- 274 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCHHHHH--
T ss_pred CeEEEcccchhHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHHHhCC------CCcEEEccHHHHH--
Confidence 37999999999999999883 45599999999999999999876654 0112233333311
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc---------ccccccHHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---------IRNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~---------~~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
+...+.||+|++.-. .....+...++.++.++|+|||+
T Consensus 275 ---------------------------------~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~ 321 (393)
T 4dmg_A 275 ---------------------------------RGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGF 321 (393)
T ss_dssp ---------------------------------HTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred ---------------------------------HHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 000112444443211 11234567888999999999999
Q ss_pred EEEEeeccc
Q psy889 152 FLCLEFSHV 160 (167)
Q Consensus 152 l~~~~~~~~ 160 (167)
|++.+++..
T Consensus 322 Lv~~s~s~~ 330 (393)
T 4dmg_A 322 LWLSSCSYH 330 (393)
T ss_dssp EEEEECCTT
T ss_pred EEEEECCCC
Confidence 997666543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-11 Score=96.76 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=69.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ...+++|+|+|+.+++.|++++...+. .
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~-----------~~~~v~g~Dis~~~l~~A~~n~~~~gl----~---------------- 267 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRR-----------YSGEIIGIEKYRKHLIGAEMNALAAGV----L---------------- 267 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTT-----------CCSCEEEEESCHHHHHHHHHHHHHTTC----G----------------
T ss_pred CEEEEccCcCcHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHcCC----C----------------
Confidence 479999999999999998865 245899999999999999999987654 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc-------cccc-HHHHHHHHHHhcCCCcEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-------NVTR-IDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-------~~~~-~~~~l~~~~~~LkpgG~l 152 (167)
.++.+...|..+++..+++||+|+++-.+. .+.. ...+++++.++| +|.+
T Consensus 268 --------------------~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~ 325 (373)
T 3tm4_A 268 --------------------DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRG 325 (373)
T ss_dssp --------------------GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEE
T ss_pred --------------------CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeE
Confidence 234555555555444445556655532211 1122 266778889988 4555
Q ss_pred EEEe
Q psy889 153 LCLE 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+++.
T Consensus 326 ~~i~ 329 (373)
T 3tm4_A 326 VFIT 329 (373)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=90.87 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=27.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+|||+|..+..+++. ..+++|+|+++.
T Consensus 27 ~~VLDlG~G~G~~s~~la~~-------------~~~V~gvD~~~~ 58 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSL-------------ARKIISIDLQEM 58 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTT-------------CSEEEEEESSCC
T ss_pred CEEEEEeecCCHHHHHHHHc-------------CCcEEEEecccc
Confidence 48999999999999999873 578999999874
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=95.71 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=76.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++.. +. . ..+++++|+|+.+++.++++++..+.
T Consensus 197 ~~VLDlg~G~G~~~l~-a~-~------------~~~V~~vD~s~~ai~~a~~n~~~n~l--------------------- 241 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CK-N------------AKKIYAIDINPHAIELLKKNIKLNKL--------------------- 241 (336)
T ss_dssp CEEEETTCTTSHHHHH-TT-T------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEccCccCHHHHh-cc-C------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999 76 2 67899999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..+.. ..||+|++.- ......++..+.++|+|||.+++.+++..
T Consensus 242 -------------------~~~v~~~~~D~~~~~---~~fD~Vi~dp----P~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 242 -------------------EHKIIPILSDVREVD---VKGNRVIMNL----PKFAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp -------------------TTTEEEEESCGGGCC---CCEEEEEECC----TTTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred -------------------CCcEEEEECChHHhc---CCCcEEEECC----cHhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 134666666665544 5688887632 11234788899999999999999887754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=98.99 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=74.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+. +.+++++..+|+.+...
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g------------~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~v~~~~~D~~~~~~~ 286 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGG------------CSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRT 286 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEESCHHHHHHH
T ss_pred CeEEEeeccCCHHHHHHHHCC------------CCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECCHHHHHHH
Confidence 479999999999999998842 35899999999999999999875432 01144555555444210
Q ss_pred ---CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ---ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ---~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....||.+.+.++... .... ...........++.++.+.|+|||++++.+
T Consensus 287 ~~~~~~~fD~Ii~dpP~~~-------------------~~~~--------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 287 YRDRGEKFDVIVMDPPKFV-------------------ENKS--------QLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp HHHTTCCEEEEEECCSSTT-------------------TCSS--------SSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhcCCCCCEEEECCCCCC-------------------CChh--------HHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 0223343333222110 0000 012233566788999999999999999866
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
.+.
T Consensus 340 ~~~ 342 (396)
T 3c0k_A 340 CSG 342 (396)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=92.87 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=38.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....
T Consensus 30 ~~VLDiG~G~G~lt~~L~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~ 73 (285)
T 1zq9_A 30 DVVLEVGPGTGNMTVKLLEK-------------AKKVVACELDPRLVAELHKRVQGT 73 (285)
T ss_dssp CEEEEECCTTSTTHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTS
T ss_pred CEEEEEcCcccHHHHHHHhh-------------CCEEEEEECCHHHHHHHHHHHHhc
Confidence 37999999999999999884 468999999999999999887543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=85.88 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=59.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++..
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~------------~~~v~~vD~~~~~~~~a~~~~~------------------------- 95 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLG------------AESVTAFDIDPDAIETAKRNCG------------------------- 95 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTT------------BSEEEEEESCHHHHHHHHHHCT-------------------------
T ss_pred CEEEEEeCCccHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHhcC-------------------------
Confidence 379999999999999998742 3579999999999999998753
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVL 146 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L 146 (167)
++.+...|...++ ++||+|+++..+++... ...+++++.+++
T Consensus 96 ---------------------~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 96 ---------------------GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp ---------------------TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred ---------------------CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 2445555555443 46777777666665543 346777888877
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-10 Score=83.22 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=52.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++....+. ++++..+|+..++
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~-- 110 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLG------------AKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEFN-- 110 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGCC--
T ss_pred CEEEEeeCCCCHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHHHHHcCC------CEEEEECchHHcC--
Confidence 379999999999999998742 34799999999999999998765432 4555666655543
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
..||.+.+..+.
T Consensus 111 -~~~D~v~~~~p~ 122 (207)
T 1wy7_A 111 -SRVDIVIMNPPF 122 (207)
T ss_dssp -CCCSEEEECCCC
T ss_pred -CCCCEEEEcCCC
Confidence 255555555443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=92.07 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=77.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.+.... . ...+++|+|+++.+++.|+.+....+. +.++..+|.... ...
T Consensus 133 ~VlDp~cGsG~~l~~~~~~~~~~~--~----~~~~v~GiDi~~~~~~~a~~n~~~~g~------~~~i~~~D~l~~-~~~ 199 (344)
T 2f8l_A 133 SILDPACGTANLLTTVINQLELKG--D----VDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLAN-LLV 199 (344)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTS--S----CEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSC-CCC
T ss_pred EEEeCCCCccHHHHHHHHHHHHhc--C----CCceEEEEECCHHHHHHHHHHHHhCCC------CceEEECCCCCc-ccc
Confidence 799999999999999998873100 0 026899999999999999998875543 355666665442 234
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH-HHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..||.++..++....... .. . ..|+.- ......+. ..++.++.+.|+|||+++++.
T Consensus 200 ~~fD~Ii~NPPfg~~~~~-~~-------~-------~~~~~~----~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDD-EN-------A-------KTFELC----REEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCEEEEEEECCCSEESCH-HH-------H-------TTSTTC----CSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCCCCCcCch-hh-------h-------hhcccc----CCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 567777776664221100 00 0 000000 00011222 357888999999999999866
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-11 Score=95.87 Aligned_cols=100 Identities=8% Similarity=-0.036 Sum_probs=65.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC----ChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI----NRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
++|||+|||+|..+..+++ . .+++++|+ ++.+++... .+..+.
T Consensus 84 ~~VLDlGcG~G~~s~~la~-------------~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~----------------- 130 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGG-------------L-KNVREVKGLTKGGPGHEEPIP--MSTYGW----------------- 130 (305)
T ss_dssp EEEEEETCTTSHHHHHHHT-------------S-TTEEEEEEECCCSTTSCCCCC--CCSTTG-----------------
T ss_pred CEEEEEcCCCCHHHHHHHh-------------c-CCEEEEeccccCchhHHHHHH--hhhcCC-----------------
Confidence 3799999999999999887 2 46999998 454321100 000000
Q ss_pred CCCCCCCCceeeeeeccccccCCCCceEEeec-ccCCCCCCccchhhHhhhhccc---ccccHH---HHHHHHHHhcCCC
Q psy889 77 LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEA-NAEELPIESDSYSAYTIAFGIR---NVTRID---KALSEAYRVLKPG 149 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~~~~~---~~~~~~---~~l~~~~~~Lkpg 149 (167)
.++.+... |...++ ..+||+|+|...++ +..+.. .+|..++++||||
T Consensus 131 ------------------------~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG 184 (305)
T 2p41_A 131 ------------------------NLVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN 184 (305)
T ss_dssp ------------------------GGEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ------------------------CCeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC
Confidence 24666666 665543 45799999865432 222222 5789999999999
Q ss_pred cEEEEEeecc
Q psy889 150 GRFLCLEFSH 159 (167)
Q Consensus 150 G~l~~~~~~~ 159 (167)
|.|++..+..
T Consensus 185 G~~v~kv~~~ 194 (305)
T 2p41_A 185 TQFCVKVLNP 194 (305)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEeCCC
Confidence 9999865543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-11 Score=93.24 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=72.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc--ccCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|||+|||+|.++..++++ +.+++++|+++.+++.|++++... ..
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~-------------~~~v~~veid~~~i~~ar~~~~~~~~~~------------------- 121 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKY-------------DTHIDFVQADEKILDSFISFFPHFHEVK------------------- 121 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTS-------------SCEEEEECSCHHHHGGGTTTSTTHHHHH-------------------
T ss_pred CEEEEEeCCcCHHHHHHHhC-------------CCEEEEEECCHHHHHHHHHHHHhhcccc-------------------
Confidence 37999999999999988874 257999999999999998765321 00
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...++.+...|..... ++||+|++.. .+...++++++++|+|||.+++..
T Consensus 122 --------------------~~~rv~~~~~D~~~~~---~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 122 --------------------NNKNFTHAKQLLDLDI---KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp --------------------TCTTEEEESSGGGSCC---CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred --------------------CCCeEEEEechHHHHH---hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 0146777777765543 6799998752 334458999999999999999853
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=89.41 Aligned_cols=102 Identities=8% Similarity=-0.019 Sum_probs=81.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||.|-++..++... +..+|+++|+++.+++.+++++...+.
T Consensus 134 ~~VLDLGCG~GpLAl~~~~~~-----------p~a~y~a~DId~~~le~a~~~l~~~g~--------------------- 181 (281)
T 3lcv_B 134 NTLRDLACGLNPLAAPWMGLP-----------AETVYIASDIDARLVGFVDEALTRLNV--------------------- 181 (281)
T ss_dssp SEEEETTCTTGGGCCTTTTCC-----------TTCEEEEEESBHHHHHHHHHHHHHTTC---------------------
T ss_pred ceeeeeccCccHHHHHHHhhC-----------CCCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999887754 378999999999999999999987664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+...|....+ ..+.||+++++-+++++.+. ...+ ++++.|+++|.++..+.
T Consensus 182 ---------------------~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 182 ---------------------PHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp ---------------------CEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred ---------------------CceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 3566666665433 45779999999998888664 2445 99999999999987553
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-10 Score=87.79 Aligned_cols=130 Identities=8% Similarity=-0.018 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++..+. ...+++++|+++.+++.++++++..+. .++++..+|+..++..
T Consensus 104 ~~VLDlcaG~G~kt~~la~~~~----------~~g~V~a~D~~~~~l~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 104 SHVIDACAAPGNKTSHLAALLK----------NQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAVSPS 168 (309)
T ss_dssp CEEEESSCTTCHHHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGSCTT
T ss_pred CEEEEeCCChhHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCChHhcCcc
Confidence 4799999999999999998874 257899999999999999999987664 3577888887776533
Q ss_pred C---CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 S---DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~---~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
. ..||.+.+..+-+.......+ .|.... .....-++.- .......++..+.++++ ||+|+++++
T Consensus 169 ~~~~~~fD~Vl~D~PcSg~G~~~r~-----pd~~~~-~~~~~~~~~~------l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 169 DPRYHEVHYILLDPSCSGSGMPSRQ-----LEEPGA-GTPSPVRLHA------LAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp CGGGTTEEEEEECCCCCC------------------------CCHHH------HHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred ccccCCCCEEEEcCCcCCCCCCccC-----CChhhh-ccCCHHHHHH------HHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 2 457766665554332110000 000000 0000000000 01223567888888887 999988765
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
+
T Consensus 236 s 236 (309)
T 2b9e_A 236 S 236 (309)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-10 Score=85.64 Aligned_cols=99 Identities=14% Similarity=-0.035 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||.|-++..++ . ..+|+++|+++.+++.+++++...+
T Consensus 107 ~~VLDlGCG~gpLal~~~---~-----------~~~y~a~DId~~~i~~ar~~~~~~g---------------------- 150 (253)
T 3frh_A 107 RRVLDIACGLNPLALYER---G-----------IASVWGCDIHQGLGDVITPFAREKD---------------------- 150 (253)
T ss_dssp SEEEEETCTTTHHHHHHT---T-----------CSEEEEEESBHHHHHHHHHHHHHTT----------------------
T ss_pred CeEEEecCCccHHHHHhc---c-----------CCeEEEEeCCHHHHHHHHHHHHhcC----------------------
Confidence 379999999999999887 2 7889999999999999999976654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH-HHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..+...|....+.+ +.||++++.-+++++.+. +....++.+.|+++|.++...
T Consensus 151 --------------------~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 151 --------------------WDFTFALQDVLCAPPA-EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp --------------------CEEEEEECCTTTSCCC-CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred --------------------CCceEEEeecccCCCC-CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 3567777787766654 489999998888887653 334448999999999888654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-10 Score=87.70 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=50.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. +++++..+|+..+++.
T Consensus 44 ~~VLDiG~G~G~lt~~La~~-------------~~~v~~vDi~~~~~~~a~~~~~~~~~-----~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 44 DIVLEIGCGTGNLTVKLLPL-------------AKKVITIDIDSRMISEVKKRCLYEGY-----NNLEVYEGDAIKTVFP 105 (299)
T ss_dssp CEEEEECCTTSTTHHHHTTT-------------SSEEEEECSCHHHHHHHHHHHHHTTC-----CCEEC----CCSSCCC
T ss_pred CEEEEEcCcCcHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECchhhCCcc
Confidence 37999999999999999873 56899999999999999998864432 3566666666655443
Q ss_pred CCCCceeeeeec
Q psy889 81 SDSYSAYTIAFG 92 (167)
Q Consensus 81 ~~~fd~~~~~~~ 92 (167)
.||.+.+..+
T Consensus 106 --~~D~Vv~n~p 115 (299)
T 2h1r_A 106 --KFDVCTANIP 115 (299)
T ss_dssp --CCSEEEEECC
T ss_pred --cCCEEEEcCC
Confidence 4555544433
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=89.60 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++...+.
T Consensus 292 ~~VLDlgcG~G~~sl~la~~-------------~~~V~gvD~s~~ai~~A~~n~~~ngl--------------------- 337 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKR-------------GFNVKGFDSNEFAIEMARRNVEINNV--------------------- 337 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEeeccchHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 37999999999999999873 56899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH-HHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 156 (167)
. +.+...|..+.... .||+|++.-.- ... ..+++.+ +.|+|+|.+++++
T Consensus 338 --------------------~-v~~~~~d~~~~~~~--~fD~Vv~dPPr---~g~~~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 338 --------------------D-AEFEVASDREVSVK--GFDTVIVDPPR---AGLHPRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp --------------------C-EEEEECCTTTCCCT--TCSEEEECCCT---TCSCHHHHHHH-HHHCCSEEEEEES
T ss_pred --------------------c-EEEEECChHHcCcc--CCCEEEEcCCc---cchHHHHHHHH-HhcCCCcEEEEEC
Confidence 3 56666666654322 67877763211 112 2344444 4589999998853
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-10 Score=88.51 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 135 IDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 135 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
...++++++++|||||.|++..+...
T Consensus 150 ~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 150 FTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 45789999999999999999766543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=88.58 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=46.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|++++...+. .++++..+|+.+
T Consensus 288 ~~VLDlgcG~G~~~~~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~f~~~d~~~ 345 (433)
T 1uwv_A 288 DRVLDLFCGMGNFTLPLATQ-------------AASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHENLEE 345 (433)
T ss_dssp CEEEEESCTTTTTHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCTTS
T ss_pred CEEEECCCCCCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEECCHHH
Confidence 37999999999999999873 56899999999999999999876554 145555555544
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=90.63 Aligned_cols=133 Identities=9% Similarity=-0.043 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCC--CCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLS--EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|||+|||+|.+...+++++......... .....+++|+|+++.+++.|+.++...+. ...+.+...+|....+
T Consensus 173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~---~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---GTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---CSSCCSEEECCTTTSC
T ss_pred CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC---CcCCCCEeeCCCCCCc
Confidence 379999999999999998875210000000 00136799999999999999998865553 1114567777776665
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
... .||.++..+|.......... +...+ .... .-......+..++++|+|||++.++.
T Consensus 250 ~~~-~fD~Iv~NPPf~~~~~~~~~--~~~~~---~~~~--------------~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 250 PST-LVDVILANPPFGTRPAGSVD--INRPD---FYVE--------------TKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CSS-CEEEEEECCCSSCCCTTCCC--CCCTT---SSSC--------------CSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC-CcCEEEECCCCCCcccccch--hhHhh---cCCC--------------CcchHHHHHHHHHHHhccCCEEEEEE
Confidence 433 78888888777543322110 00000 0000 01112356788999999999998866
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-10 Score=90.66 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.|+++++..+. .++++..+|+++
T Consensus 216 ~vLDl~cG~G~~~l~la~~-------------~~~V~gvd~~~~ai~~a~~n~~~ng~-----~~v~~~~~d~~~ 272 (369)
T 3bt7_A 216 DLLELYCGNGNFSLALARN-------------FDRVLATEIAKPSVAAAQYNIAANHI-----DNVQIIRMAAEE 272 (369)
T ss_dssp EEEEESCTTSHHHHHHGGG-------------SSEEEEECCCHHHHHHHHHHHHHTTC-----CSEEEECCCSHH
T ss_pred EEEEccCCCCHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECCHHH
Confidence 6999999999999998873 46899999999999999999876554 234455444433
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-10 Score=85.06 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=50.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++... .+++++..+|+.+++++
T Consensus 32 ~~VLDiG~G~G~lt~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 32 DNIFEIGSGKGHFTLELVQR-------------CNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFKFP 91 (244)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCCCC
T ss_pred CEEEEEeCCchHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHHhCCcc
Confidence 37999999999999999884 46799999999999999987642 13678888888887765
Q ss_pred C
Q psy889 81 S 81 (167)
Q Consensus 81 ~ 81 (167)
.
T Consensus 92 ~ 92 (244)
T 1qam_A 92 K 92 (244)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-09 Score=85.37 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=73.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCC----CC-----------------------CCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPN----TL-----------------------SEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~----~~-----------------------~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|||++||+|.++..++......++. .. ......+++|+|+++.+++.|++++
T Consensus 204 ~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na 283 (393)
T 3k0b_A 204 PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNA 283 (393)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHH
Confidence 69999999999998887765321100 00 0001357999999999999999999
Q ss_pred HhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcc--c--
Q psy889 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI--R-- 130 (167)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~--~-- 130 (167)
...+. ..++.+...|..+++.. .+||+|+++--+ .
T Consensus 284 ~~~gl----------------------------------------~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~ 322 (393)
T 3k0b_A 284 VEAGL----------------------------------------GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLE 322 (393)
T ss_dssp HHTTC----------------------------------------TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHH
T ss_pred HHcCC----------------------------------------CCceEEEECChHhCCCC-CCCCEEEECCCCccccC
Confidence 87765 13466667776665543 467888776221 1
Q ss_pred ccccHHHHHHHHHHhcCC--CcEEEEEe
Q psy889 131 NVTRIDKALSEAYRVLKP--GGRFLCLE 156 (167)
Q Consensus 131 ~~~~~~~~l~~~~~~Lkp--gG~l~~~~ 156 (167)
.......+.+++.++||+ ||.++++.
T Consensus 323 ~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 323 DEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 112344455555566655 88888765
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=87.81 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=72.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++..... .. .
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~-----------~~~V~avDi~~~av~~a~~N~~~n~~~-~~---------~------- 100 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETP-----------AEEVWLNDISEDAYELMKRNVMLNFDG-EL---------R------- 100 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSS-----------CSEEEEEESCHHHHHHHHHHHHHHCCS-CC---------E-------
T ss_pred CEEEECCCchhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHhccc-cc---------c-------
Confidence 3799999999999999998763 567999999999999999999765100 00 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+.+..+. .+ -.++.+...|..... .....||+|++.- ......++..+.+.|++||.++++.
T Consensus 101 ~~~~~~~~--~g-------l~~i~v~~~Da~~~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 101 ESKGRAIL--KG-------EKTIVINHDDANRLMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp ECSSEEEE--ES-------SSEEEEEESCHHHHHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccc--cC-------CCceEEEcCcHHHHHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 00000000 00 012555555554321 1124578876421 1123577888999999999887753
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=82.85 Aligned_cols=114 Identities=9% Similarity=0.042 Sum_probs=74.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCC----CCC-----------------------CCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPN----TLS-----------------------EHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~----~~~-----------------------~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|+|.+||+|.+....+.......+. ..- .....+++|+|+++.+++.|++++
T Consensus 197 ~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na 276 (384)
T 3ldg_A 197 PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNA 276 (384)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHH
Confidence 68999999999999887755321100 000 001256999999999999999999
Q ss_pred HhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc----
Q psy889 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR---- 130 (167)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---- 130 (167)
...+. ..++.+...|..+++.. ..||+|+++--+.
T Consensus 277 ~~~gl----------------------------------------~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~ 315 (384)
T 3ldg_A 277 REVGL----------------------------------------EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLL 315 (384)
T ss_dssp HHTTC----------------------------------------TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTS
T ss_pred HHcCC----------------------------------------CCceEEEECChHHCCcc-CCcCEEEECCchhhccC
Confidence 87765 13466666666665443 3677777752211
Q ss_pred ccccHHHHHHHHHHhcCC--CcEEEEEe
Q psy889 131 NVTRIDKALSEAYRVLKP--GGRFLCLE 156 (167)
Q Consensus 131 ~~~~~~~~l~~~~~~Lkp--gG~l~~~~ 156 (167)
...+...+.+++.++||+ ||.++++.
T Consensus 316 ~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 316 DDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 123455566666777766 88888765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.8e-09 Score=83.82 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=75.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCC----CC-----------------------CCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPN----TL-----------------------SEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~----~~-----------------------~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.+|||++||+|.++..++.......+. .. ......+++|+|+++.+++.|+++
T Consensus 197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~N 276 (385)
T 3ldu_A 197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAREN 276 (385)
T ss_dssp SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHH
Confidence 369999999999999988765311100 00 000125799999999999999999
Q ss_pred HHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc---
Q psy889 54 ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--- 130 (167)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--- 130 (167)
+...+. ...+.+...|..+++.. ..||+|+++--+.
T Consensus 277 a~~~gl----------------------------------------~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl 315 (385)
T 3ldu_A 277 AEIAGV----------------------------------------DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERL 315 (385)
T ss_dssp HHHHTC----------------------------------------GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSH
T ss_pred HHHcCC----------------------------------------CCceEEEECChhhcCcC-CCCcEEEECCCCcCcc
Confidence 987665 12466777776665443 4678887743322
Q ss_pred -ccccHHHHHHHHHHhcCC--CcEEEEEe
Q psy889 131 -NVTRIDKALSEAYRVLKP--GGRFLCLE 156 (167)
Q Consensus 131 -~~~~~~~~l~~~~~~Lkp--gG~l~~~~ 156 (167)
...+...+.+++.++||+ |+.++++.
T Consensus 316 ~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 316 EDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 123345566666677766 88887765
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-11 Score=92.07 Aligned_cols=59 Identities=8% Similarity=0.236 Sum_probs=47.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ..+++++..+|+.+++++
T Consensus 32 ~VLDiG~G~G~~~~~l~~~-------------~~~v~~id~~~~~~~~a~~~~~-------~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 32 TVYEIGTGKGHLTTKLAKI-------------SKQVTSIELDSHLFNLSSEKLK-------LNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp EEEECSCCCSSCSHHHHHH-------------SSEEEESSSSCSSSSSSSCTTT-------TCSEEEECCSCCTTTTCC
T ss_pred EEEEEeCCCCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHhc-------cCCceEEEECChhhcCcc
Confidence 7999999999999999884 4679999999999988876653 124567777777776654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-09 Score=80.78 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=64.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .+++++..+|+.+++++
T Consensus 52 ~~VLEIG~G~G~lT~~La~~-------------~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 52 DVVLEIGLGKGILTEELAKN-------------AKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIWGDALKVDLN 111 (295)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEESCTTTSCGG
T ss_pred CEEEEECCCchHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEECchhhCCcc
Confidence 37999999999999999984 46899999999999999998862 24789999999999988
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
...||.++...+.
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999988775
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-09 Score=84.81 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=72.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCC-CcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCA-PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||++||+|.++..++.... + .+++++|+++.+++.++++++..+.
T Consensus 55 ~VLDlfaGtG~~sl~aa~~~~-----------ga~~V~avDi~~~av~~~~~N~~~Ngl--------------------- 102 (392)
T 3axs_A 55 KVADPLSASGIRAIRFLLETS-----------CVEKAYANDISSKAIEIMKENFKLNNI--------------------- 102 (392)
T ss_dssp EEEESSCTTSHHHHHHHHHCS-----------CEEEEEEECSCHHHHHHHHHHHHHTTC---------------------
T ss_pred EEEECCCcccHHHHHHHHhCC-----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 799999999999999998652 4 5899999999999999999987654
Q ss_pred CCCCceeeeeeccccccCCCCc-eEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPR-LRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+ +.+...|..... .....||+|++.- ......++..+.+.|++||+++++.
T Consensus 103 -------------------~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 103 -------------------PEDRYEIHGMEANFFLRKEWGFGFDYVDLDP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -------------------CGGGEEEECSCHHHHHHSCCSSCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCceEEEEeCCHHHHHHHhhCCCCcEEEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 012 555555543321 1134578776632 1123457888999999999887754
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.6e-09 Score=83.66 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=73.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++++.. ...+++|+|+++.+++.| .++++..+|+...+. .
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~----------~~~~i~gvDi~~~~~~~a--------------~~~~~~~~D~~~~~~-~ 96 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHG----------TAYRFVGVEIDPKALDLP--------------PWAEGILADFLLWEP-G 96 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHC----------SCSEEEEEESCTTTCCCC--------------TTEEEEESCGGGCCC-S
T ss_pred EEEECCCCChHHHHHHHHHhC----------CCCeEEEEECCHHHHHhC--------------CCCcEEeCChhhcCc-c
Confidence 799999999999999998763 257899999999998766 245667777766543 3
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hccc-ccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIR-NVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
+.||.+++.++......... ... + .....-+.+-.. ..+. .......++.++.++|+|||+++++..
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~-~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASK-YPI------H--VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTT-CSB------C--CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECcCccCcccccc-ccc------c--cCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 56777777766643211000 000 0 000000000000 0000 011234678899999999999998654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=76.64 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=59.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+++.+++.+++++. ..++++..+|+.+++++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~-------------~~~V~avEid~~~~~~l~~~~~--------~~~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEA-------------GAEVTAIEKDLRLRPVLEETLS--------GLPVRLVFQDALLYPWEE 107 (271)
T ss_dssp CEEEECCTTSHHHHHHHHT-------------TCCEEEEESCGGGHHHHHHHTT--------TSSEEEEESCGGGSCGGG
T ss_pred eEEEEeCchHHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhcC--------CCCEEEEECChhhCChhh
Confidence 6999999999999999983 5789999999999999998764 247899999999988764
Q ss_pred C-CCceeeeeeccc
Q psy889 82 D-SYSAYTIAFGIR 94 (167)
Q Consensus 82 ~-~fd~~~~~~~~~ 94 (167)
. .|+.++...+..
T Consensus 108 ~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 108 VPQGSLLVANLPYH 121 (271)
T ss_dssp SCTTEEEEEEECSS
T ss_pred ccCccEEEecCccc
Confidence 3 677777777653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-08 Score=76.39 Aligned_cols=72 Identities=8% Similarity=0.102 Sum_probs=57.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .+++++..+|+.+++++
T Consensus 31 ~~VLEIG~G~G~lt~~La~~-------------~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 31 DTLVEIGPGRGALTDYLLTE-------------CDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDALQFDFS 90 (255)
T ss_dssp CEEEEECCTTTTTHHHHTTT-------------SSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCTTTCCGG
T ss_pred CEEEEEcccccHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcchHhCCHH
Confidence 37999999999999999873 57899999999999999988753 24788999999998754
Q ss_pred C----CCCceeeeeecc
Q psy889 81 S----DSYSAYTIAFGI 93 (167)
Q Consensus 81 ~----~~fd~~~~~~~~ 93 (167)
. ..|+ ++.+.+.
T Consensus 91 ~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GSCCSSCEE-EEEECCH
T ss_pred HhccCCCeE-EEecCCc
Confidence 3 4465 5555544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=85.27 Aligned_cols=134 Identities=7% Similarity=-0.116 Sum_probs=80.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCC--CC-----CCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNT--LS-----EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~--~~-----~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 73 (167)
.+|+|.|||+|.+...+++++....... .+ ......++|+|+++.++..|+.++...+....+..+.....+|
T Consensus 171 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gD 250 (541)
T 2ar0_A 171 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN 250 (541)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESC
T ss_pred CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCC
Confidence 4799999999999999988763110000 00 0002479999999999999999886554311001124566666
Q ss_pred cccCC-CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEE
Q psy889 74 AEELP-IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 74 ~~~l~-~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
....+ .....||.++..+|......... ..+ ...+.. ..-...+..+.++|+|||++
T Consensus 251 tL~~~~~~~~~fD~Vv~NPPf~~~~~~~~-----~~~---~~~~~~--------------~~~~~Fl~~~l~~Lk~gGr~ 308 (541)
T 2ar0_A 251 TLGSDGENLPKAHIVATNPPFGSAAGTNI-----TRT---FVHPTS--------------NKQLCFMQHIIETLHPGGRA 308 (541)
T ss_dssp TTSHHHHTSCCEEEEEECCCCTTCSSCCC-----CSC---CSSCCS--------------CHHHHHHHHHHHHEEEEEEE
T ss_pred CcccccccccCCeEEEECCCcccccchhh-----Hhh---cCCCCC--------------chHHHHHHHHHHHhCCCCEE
Confidence 55433 44567888888887754332210 000 000000 11124577889999999999
Q ss_pred EEEe
Q psy889 153 LCLE 156 (167)
Q Consensus 153 ~~~~ 156 (167)
.++.
T Consensus 309 a~V~ 312 (541)
T 2ar0_A 309 AVVV 312 (541)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8865
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-08 Score=79.68 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
|...+|+..++.|+|||++++...+..+
T Consensus 203 D~~~fL~~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 203 DLAEFLRARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 4455688889999999999998887765
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=80.03 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=65.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|.++..+++.+ .+.+++++|.|+.+++.|++++...+ +++++..+|+..++
T Consensus 28 ~~vLD~g~G~G~~s~~la~~~-----------~~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 28 KIILDCTVGEGGHSRAILEHC-----------PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREADFL 90 (301)
T ss_dssp CEEEETTCTTSHHHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGHHHH
T ss_pred CEEEEEeCCcCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCHHHHHHH
Confidence 379999999999999999976 26789999999999999999886543 47899999998876
Q ss_pred CC---CCCCceeeeeeccccc
Q psy889 79 IE---SDSYSAYTIAFGIRNI 96 (167)
Q Consensus 79 ~~---~~~fd~~~~~~~~~~~ 96 (167)
+. ...||.+++..+.+..
T Consensus 91 l~~~g~~~~D~Vl~D~gvSs~ 111 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDLGVSTY 111 (301)
T ss_dssp HHHTTCSCEEEEEEECSCCHH
T ss_pred HHhcCCCCCCEEEEcCccchh
Confidence 22 2679999988876543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=9.8e-08 Score=83.14 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=42.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCC-----CC--------------------------CCCCcEEEeeCChHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTL-----SE--------------------------HCAPHVTVADINRAMLDVG 50 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~-----~~--------------------------~~~~~~~~~D~s~~~~~~a 50 (167)
+|||.+||+|.+...++.......+... -+ ....+++|+|+++.+++.|
T Consensus 193 ~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (703)
T 3v97_A 193 PLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRA 272 (703)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHH
Confidence 6999999999999988775421111000 00 0135799999999999999
Q ss_pred HHHHHhccc
Q psy889 51 EQRARDLFK 59 (167)
Q Consensus 51 ~~~~~~~~~ 59 (167)
++++...+.
T Consensus 273 ~~N~~~agv 281 (703)
T 3v97_A 273 RTNARLAGI 281 (703)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999988776
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-08 Score=79.89 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=63.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc--ccCCCCCCcccccccccccC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL- 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~l- 77 (167)
.+|||+|||+|..+..+++ .+.+++++|+|+.+++.++++++.. +. .++++..+|+.+.
T Consensus 95 ~~VLDLgcG~G~~al~LA~-------------~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-----~~i~~i~~Da~~~L 156 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMS-------------KASQGIYIERNDETAVAARHNIPLLLNEG-----KDVNILTGDFKEYL 156 (410)
T ss_dssp CEEEESSCSSSHHHHHHHT-------------TCSEEEEEESCHHHHHHHHHHHHHHSCTT-----CEEEEEESCGGGSH
T ss_pred CEEEEeCCCchHHHHHHHh-------------cCCEEEEEECCHHHHHHHHHhHHHhccCC-----CcEEEEECcHHHhh
Confidence 3799999999999999887 3578999999999999999999765 32 4688999998874
Q ss_pred C-CCCCCCceeeeeecccc
Q psy889 78 P-IESDSYSAYTIAFGIRN 95 (167)
Q Consensus 78 ~-~~~~~fd~~~~~~~~~~ 95 (167)
+ +....||.+.+.++.+.
T Consensus 157 ~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 157 PLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp HHHHHHCCSEEEECCEEC-
T ss_pred hhccCCCceEEEECCCCcC
Confidence 4 24568999999888875
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-08 Score=76.25 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=62.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|.+||.|+++..+++. +++++|+|.++.+++.+++ +.. ++++++.+++.+++
T Consensus 25 ~~VD~T~G~GGHS~~il~~-------------~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 25 VYVDATLGGAGHARGILER-------------GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNFRHLKRHL 82 (285)
T ss_dssp EEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCGGGHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHC-------------CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCcchHHHHH
Confidence 6899999999999999984 4689999999999999987 532 47899999999985
Q ss_pred --CCCCCCceeeeeecccccc
Q psy889 79 --IESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~ 97 (167)
...+.+|.+....|.+.+.
T Consensus 83 ~~~g~~~vDgIL~DLGvSS~Q 103 (285)
T 1wg8_A 83 AALGVERVDGILADLGVSSFH 103 (285)
T ss_dssp HHTTCSCEEEEEEECSCCHHH
T ss_pred HHcCCCCcCEEEeCCcccccc
Confidence 3346799999988887764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-08 Score=79.91 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=71.9
Q ss_pred CeEEeeecCCCchHHHHHHhh----ccCCCC--CCCCCCCCcEEEeeCC-----------hHHHHHHHHHHHhcccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYV----DKLPPN--TLSEHCAPHVTVADIN-----------RAMLDVGEQRARDLFKVPVP 63 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~----~~~~~~--~~~~~~~~~~~~~D~s-----------~~~~~~a~~~~~~~~~~~~~ 63 (167)
++|+|+||++|..|+.++..+ ...-.. ....++..+++..|+. +.+.+..++.... .. +
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~---~ 129 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KI---G 129 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CT---T
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CC---C
Confidence 479999999999999887762 110000 0001245678888987 4443333221100 00 0
Q ss_pred CCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEE---eecccCCCCCCccchhhHhhhhcccccccHHHHHH
Q psy889 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRF---LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 140 (167)
Q Consensus 64 ~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~ 140 (167)
.-.+.-+.+++.+-.|+.++||++-.+..++=+......+.= ...+-..+.....+-..|.-.+.-..-.|...+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 012222334444444555555555555555433221111000 00000000000000011111100011234445577
Q ss_pred HHHHhcCCCcEEEEEeecccCC
Q psy889 141 EAYRVLKPGGRFLCLEFSHVNN 162 (167)
Q Consensus 141 ~~~~~LkpgG~l~~~~~~~~~~ 162 (167)
..++.|+|||++++...+..+.
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHhccCCeEEEEEecCCCc
Confidence 7799999999999988877654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=75.45 Aligned_cols=135 Identities=12% Similarity=0.128 Sum_probs=80.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCC-CCCcccccccccccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-PNPRLRFLEANAEELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~l~- 78 (167)
++|||+|+|.|+-|.+++.... ...+++.|+++.-+...++++++.+.... ...+++....|...++
T Consensus 150 ~~VLD~CAaPGGKT~~la~~~~-----------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 150 DIVLDLCAAPGGKTLALLQTGC-----------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp EEEEESSCTTCHHHHHHHHTTC-----------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred CEEEEecCCccHHHHHHHHhcC-----------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 4799999999999999988652 56799999999999999999987654211 1134555555655543
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc-cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+.||.+++.-+=+... .....-+ .+.... ...+-+ ..+. -..++|..+.+.|||||+|+++++
T Consensus 219 ~~~~~fD~VLlDaPCSg~g-----~g~~r~~-~~~~~~-~~~~~~------~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC 285 (359)
T 4fzv_A 219 LEGDTYDRVLVDVPCTTDR-----HSLHEEE-NNIFKR-SRKKER------QILPVLQVQLLAAGLLATKPGGHVVYSTC 285 (359)
T ss_dssp HSTTCEEEEEEECCCCCHH-----HHTTCCT-TCTTSG-GGHHHH------HTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred hccccCCEEEECCccCCCC-----CcccccC-hhhhhh-CCHHHH------HHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 4455666555443322100 0000000 000000 000000 0111 235788999999999999999776
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
+-
T Consensus 286 Sl 287 (359)
T 4fzv_A 286 SL 287 (359)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.8e-07 Score=66.22 Aligned_cols=111 Identities=9% Similarity=-0.053 Sum_probs=66.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC---
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l--- 77 (167)
.+|||+||| ..|..+++ . .+++++.+|.+++..+.++++++..+. ++..++++..+++.+.
T Consensus 32 ~~VLEiGtG--ySTl~lA~-~-----------~~g~VvtvE~d~~~~~~ar~~l~~~g~--~~~~~I~~~~gda~~~~~w 95 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAE-L-----------PGKHVTSVESDRAWARMMKAWLAANPP--AEGTEVNIVWTDIGPTGDW 95 (202)
T ss_dssp SEEEEESCS--HHHHHHHT-S-----------TTCEEEEEESCHHHHHHHHHHHHHSCC--CTTCEEEEEECCCSSBCGG
T ss_pred CEEEEECch--HHHHHHHH-c-----------CCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCCceEEEEeCchhhhcc
Confidence 479999985 55555555 2 268899999999999999999987652 0123444444443321
Q ss_pred --CCCCCCCceeeeeeccccccCCCCceEEeecccCCC-----CC-CccchhhHhhhhcccccccHHHHHHHHHHhcCCC
Q psy889 78 --PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-----PI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 149 (167)
Q Consensus 78 --~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkpg 149 (167)
|.+...++ .+..+ .. ..+.||+|++-.- + ....+..+.+.|+||
T Consensus 96 g~p~~~~~~~-----------------------~l~~~~~~i~~~~~~~~fDlIfIDg~----k-~~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 96 GHPVSDAKWR-----------------------SYPDYPLAVWRTEGFRHPDVVLVDGR----F-RVGCALATAFSITRP 147 (202)
T ss_dssp GCBSSSTTGG-----------------------GTTHHHHGGGGCTTCCCCSEEEECSS----S-HHHHHHHHHHHCSSC
T ss_pred cccccchhhh-----------------------hHHHHhhhhhccccCCCCCEEEEeCC----C-chhHHHHHHHhcCCC
Confidence 01100000 00000 01 1356899887432 1 125566677999999
Q ss_pred cEEEEE
Q psy889 150 GRFLCL 155 (167)
Q Consensus 150 G~l~~~ 155 (167)
|++++-
T Consensus 148 G~Iv~D 153 (202)
T 3cvo_A 148 VTLLFD 153 (202)
T ss_dssp EEEEET
T ss_pred eEEEEe
Confidence 999773
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-07 Score=72.43 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=51.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCC-CCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||+|.++..+++... . ..+++++|+++.+++.++++. . +++++..+|+.++++
T Consensus 44 ~~VLEIG~G~G~lt~~La~~~~----------~~~~~V~avDid~~~l~~a~~~~---~------~~v~~i~~D~~~~~~ 104 (279)
T 3uzu_A 44 ERMVEIGPGLGALTGPVIARLA----------TPGSPLHAVELDRDLIGRLEQRF---G------ELLELHAGDALTFDF 104 (279)
T ss_dssp CEEEEECCTTSTTHHHHHHHHC----------BTTBCEEEEECCHHHHHHHHHHH---G------GGEEEEESCGGGCCG
T ss_pred CEEEEEccccHHHHHHHHHhCC----------CcCCeEEEEECCHHHHHHHHHhc---C------CCcEEEECChhcCCh
Confidence 4799999999999999998763 1 245999999999999999883 1 368899999999886
Q ss_pred CC
Q psy889 80 ES 81 (167)
Q Consensus 80 ~~ 81 (167)
+.
T Consensus 105 ~~ 106 (279)
T 3uzu_A 105 GS 106 (279)
T ss_dssp GG
T ss_pred hH
Confidence 43
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-08 Score=75.28 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=59.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh-------HHHHHHHHHHHhcccCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR-------AMLDVGEQRARDLFKVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 73 (167)
.+|||+|||+|.++..++.. +.+++++|+++ .+++.++++.+..+. ..++++..+|
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~-------------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d 147 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASL-------------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGN 147 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHT-------------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESC
T ss_pred CeEEEeeCccCHHHHHHHHh-------------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECC
Confidence 37999999999999999883 56899999999 999999887654432 1257888888
Q ss_pred cccC-C-CCC--CCCceeeeeeccc
Q psy889 74 AEEL-P-IES--DSYSAYTIAFGIR 94 (167)
Q Consensus 74 ~~~l-~-~~~--~~fd~~~~~~~~~ 94 (167)
++++ + ++. +.||.+.+.++..
T Consensus 148 ~~~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 148 AAEQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHHHhhhccCCCccEEEECCCCC
Confidence 8774 3 444 6788877765553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-07 Score=71.23 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..++.++++. ...+++.+|+++..++.+++.+..........
T Consensus 86 ~VLIiGgGdG~~~revlk~~-----------~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d----------------- 137 (294)
T 3o4f_A 86 HVLIIGGGDGAMLREVTRHK-----------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDD----------------- 137 (294)
T ss_dssp EEEEESCTTSHHHHHHHTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC-----------------
T ss_pred eEEEECCCchHHHHHHHHcC-----------CcceEEEEcCCHHHHHHHHhcCccccccccCC-----------------
Confidence 79999999999999999876 36789999999999999998765432111111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccc-cc---cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN-VT---RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~-~~---~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|.... .....+||+|+.-..-.. .. ..+..++.+++.|+|||.++.-
T Consensus 138 -------------------pRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 138 -------------------PRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp -------------------TTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------CcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 4555555555432 233456777765321100 00 1356788999999999999873
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=76.18 Aligned_cols=155 Identities=8% Similarity=-0.046 Sum_probs=78.9
Q ss_pred CeEEeeecCCCchHHHHHHhh--------ccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYV--------DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA 72 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 72 (167)
++|+|+||++|..|+.+...+ .+... +.++..+++..|+........-+.+..... ..+.-.+.-+.+
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~---~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-~~~~~f~~gvpg 128 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGR---ENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPG 128 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSC---SSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEES
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCC---CCCCceEEEecCCCchHHHHHHHhcchhcc-cCCCEEEEecch
Confidence 479999999998887665541 11110 012467788999988877766655432110 000012223334
Q ss_pred ccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEE
Q psy889 73 NAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 73 d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
++.+-.|+.+++|++-.+..++=+......+. . +-..+.....+-..|.-.+.-..-.|...+|+..++.|+|||++
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~--~-nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m 205 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE--S-NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC--C-CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhh--c-cCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 44445566666666666665544322100000 0 00000000000000000000011235566688899999999999
Q ss_pred EEEeecccCC
Q psy889 153 LCLEFSHVNN 162 (167)
Q Consensus 153 ~~~~~~~~~~ 162 (167)
++...+..+.
T Consensus 206 vl~~~gr~~~ 215 (359)
T 1m6e_X 206 VLTILGRRSE 215 (359)
T ss_dssp EEEEEECSSS
T ss_pred EEEEecCCCC
Confidence 9988887664
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=73.21 Aligned_cols=90 Identities=6% Similarity=-0.175 Sum_probs=61.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCC-CC---CCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPN-TL---SEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~-~~---~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|+|.|||+|.+...+++++...... .. .......++|+|+++.++..|+.++...+. ..++....+|....
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi----~~~i~i~~gDtL~~ 322 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI----DFNFGKKNADSFLD 322 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC----CCBCCSSSCCTTTS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC----CcccceeccchhcC
Confidence 69999999999988887654200000 00 000035799999999999999998876554 12344467776554
Q ss_pred C-CCCCCCceeeeeecccc
Q psy889 78 P-IESDSYSAYTIAFGIRN 95 (167)
Q Consensus 78 ~-~~~~~fd~~~~~~~~~~ 95 (167)
+ +....||.+++.+|...
T Consensus 323 ~~~~~~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 323 DQHPDLRADFVMTNPPFNM 341 (544)
T ss_dssp CSCTTCCEEEEEECCCSSC
T ss_pred cccccccccEEEECCCcCC
Confidence 4 66788999999988853
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.6e-07 Score=75.89 Aligned_cols=103 Identities=10% Similarity=-0.017 Sum_probs=69.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-++...+++..... ...+++++|-|+ +...+++.....++
T Consensus 360 vVldVGaGrGpLv~~al~A~a~~~-------~~vkVyAVEknp-~A~~a~~~v~~N~~---------------------- 409 (637)
T 4gqb_A 360 VLMVLGAGRGPLVNASLRAAKQAD-------RRIKLYAVEKNP-NAVVTLENWQFEEW---------------------- 409 (637)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTT-------CEEEEEEEESCH-HHHHHHHHHHHHTT----------------------
T ss_pred EEEEECCCCcHHHHHHHHHHHhcC-------CCcEEEEEECCH-HHHHHHHHHHhccC----------------------
Confidence 599999999999666666543100 133689999997 55556666654444
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
+.++.++.++++++..+ .++|+|++-.. +..-..+..++.-..++|||||.++
T Consensus 410 ------------------~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 410 ------------------GSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ------------------GGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred ------------------CCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 26788899999887654 56899988432 1111223456666789999999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-07 Score=79.38 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=68.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCC-CCCC-CCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLP-PNTL-SEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
.|||+|||+|-++...+++..... .++. ......+++++|.++.++...+.+.. .++
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-------------------- 470 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-------------------- 470 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT--------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC--------------------
Confidence 599999999999765444331000 0000 00013489999999977766665554 233
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCC-----ccchhhHhhhhccc--ccccHHHHHHHHHHhcCCCcEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-----SDSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~D~v~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l 152 (167)
+.++.++..+++++..+ ..+.|+|++-..=. .-......|..+.+.|||||.+
T Consensus 471 --------------------~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 471 --------------------KRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp --------------------TTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred --------------------CCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 14677888888776542 46789998844211 1112345666677999999987
Q ss_pred E
Q psy889 153 L 153 (167)
Q Consensus 153 ~ 153 (167)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-07 Score=69.67 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=47.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++. +.. .. ..+++++|+++.+++.++++... .+++++..+|+.+++++
T Consensus 23 ~~VLEIG~G~G~lt~-l~~-~~-----------~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 23 QAMVEIGPGLAALTE-PVG-ER-----------LDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp CCEEEECCTTTTTHH-HHH-TT-----------CSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGGCCHH
T ss_pred CEEEEECCCCcHHHH-hhh-CC-----------CCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECchhhCCHH
Confidence 379999999999999 543 21 23499999999999999976642 13688999999988754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=5e-06 Score=70.39 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=64.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC--C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l--~ 78 (167)
.+|+|.|||+|.+...+++++... ....++|+|+++.++..|+.++...+. ...+.....+|.... |
T Consensus 223 ~~VlDPaCGSG~fLi~a~~~l~~~--------~~~~i~G~Eid~~~~~lA~~Nl~l~gi---~~~~~~I~~gDtL~~d~p 291 (542)
T 3lkd_A 223 FTLYDATMGSGSLLLNAKRYSRQP--------QTVVYFGQELNTSTYNLARMNMILHGV---PIENQFLHNADTLDEDWP 291 (542)
T ss_dssp CEEEETTCTTSTTGGGHHHHCSCT--------TTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEESCTTTSCSC
T ss_pred CEEeecccchhHHHHHHHHHHHhc--------cCceEEEEECcHHHHHHHHHHHHHcCC---CcCccceEecceeccccc
Confidence 379999999999999988876310 256799999999999999998865543 223456777886665 3
Q ss_pred -CCCCCCceeeeeeccc
Q psy889 79 -IESDSYSAYTIAFGIR 94 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~ 94 (167)
+....||.++..+|..
T Consensus 292 ~~~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 292 TQEPTNFDGVLMNPPYS 308 (542)
T ss_dssp CSSCCCBSEEEECCCTT
T ss_pred ccccccccEEEecCCcC
Confidence 5678899999999886
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-07 Score=69.02 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=50.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++ . ..++++..+|+.+++++
T Consensus 33 ~~VLDiG~G~G~lt~~L~~~~------------~~~v~avEid~~~~~~~~~~-~--------~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 33 NTVVEVGGGTGNLTKVLLQHP------------LKKLYVIELDREMVENLKSI-G--------DERLEVINEDASKFPFC 91 (249)
T ss_dssp CEEEEEESCHHHHHHHHTTSC------------CSEEEEECCCHHHHHHHTTS-C--------CTTEEEECSCTTTCCGG
T ss_pred CEEEEEcCchHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHhc-c--------CCCeEEEEcchhhCChh
Confidence 379999999999999998742 47899999999999999865 1 34788999999998765
Q ss_pred C
Q psy889 81 S 81 (167)
Q Consensus 81 ~ 81 (167)
.
T Consensus 92 ~ 92 (249)
T 3ftd_A 92 S 92 (249)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-07 Score=73.57 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=62.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|..||.|+.+..+++.+. +.++++|+|.++.+++.++ ++ ..++++++.+++.+++
T Consensus 60 iyVD~TlG~GGHS~~iL~~lg----------~~GrVig~D~Dp~Al~~A~-rL--------~~~Rv~lv~~nF~~l~~~L 120 (347)
T 3tka_A 60 IYIDGTFGRGGHSRLILSQLG----------EEGRLLAIDRDPQAIAVAK-TI--------DDPRFSIIHGPFSALGEYV 120 (347)
T ss_dssp EEEESCCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHT-TC--------CCTTEEEEESCGGGHHHHH
T ss_pred EEEEeCcCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHH-hh--------cCCcEEEEeCCHHHHHHHH
Confidence 589999999999999999864 4689999999999999884 43 1258899999998875
Q ss_pred --CCC-CCCceeeeeecccccc
Q psy889 79 --IES-DSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 --~~~-~~fd~~~~~~~~~~~~ 97 (167)
..- +.+|.++...|.+.+.
T Consensus 121 ~~~g~~~~vDgILfDLGVSS~Q 142 (347)
T 3tka_A 121 AERDLIGKIDGILLDLGVSSPQ 142 (347)
T ss_dssp HHTTCTTCEEEEEEECSCCHHH
T ss_pred HhcCCCCcccEEEECCccCHHH
Confidence 111 3699999999998876
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-07 Score=71.56 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=60.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|+.+..++.... ...++++|++..+... .. +
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~-----------~~~v~g~dVGvDl~~~--------pi---~----------------- 116 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKE-----------VSGVKGFTLGRDGHEK--------PM---N----------------- 116 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCTTCCC--------CC---C-----------------
T ss_pred CEEEEecCCCCHHHHHHHHhcC-----------CCcceeEEEeccCccc--------cc---c-----------------
Confidence 3799999999999998876431 3457788876433000 00 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc----ccccHH--HHHHHHHHhcCCC-cEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR----NVTRID--KALSEAYRVLKPG-GRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~----~~~~~~--~~l~~~~~~Lkpg-G~l~ 153 (167)
...+ +.++.....+.+...+....+|+|+|..+.+ ++...+ .++..+.++|+|| |.|+
T Consensus 117 ~~~~---------------g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV 181 (277)
T 3evf_A 117 VQSL---------------GWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFC 181 (277)
T ss_dssp CCBT---------------TGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCcC---------------CCCeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 0000 0122222333333344556788888855433 222222 3478889999999 9999
Q ss_pred EEeec
Q psy889 154 CLEFS 158 (167)
Q Consensus 154 ~~~~~ 158 (167)
+-.|.
T Consensus 182 ~KVf~ 186 (277)
T 3evf_A 182 VKVLA 186 (277)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 96665
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-06 Score=73.38 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=52.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc--c-CCCCCCcccccccccccC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--K-VPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~--~-~~~~~~~~~~~~~d~~~l 77 (167)
.+|||.|||+|.+...++.++... ...+++|+|+++.+++.|+.+..... . +. .........++...
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei--------~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--i~~~~I~~dD~L~~ 392 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNV--------MPRQIWANDIETLFLELLSIRLGLLFPQLVSS--NNAPTITGEDVCSL 392 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTC--------CGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--TBCCEEECCCGGGC
T ss_pred CEEEECCCCccHHHHHHHHHhccc--------CCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--CCcceEEecchhcc
Confidence 379999999999999998866310 13579999999999999944432111 1 10 11112333444443
Q ss_pred C-CCCCCCceeeeeecc
Q psy889 78 P-IESDSYSAYTIAFGI 93 (167)
Q Consensus 78 ~-~~~~~fd~~~~~~~~ 93 (167)
. .....||.++..+|.
T Consensus 393 ~~~~~~kFDVVIgNPPY 409 (878)
T 3s1s_A 393 NPEDFANVSVVVMNPPY 409 (878)
T ss_dssp CGGGGTTEEEEEECCBC
T ss_pred cccccCCCCEEEECCCc
Confidence 2 345677777777776
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-06 Score=65.88 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=58.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCC----Cccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN----PRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~d~~~ 76 (167)
.+|||+|||+|..++.++.. +.+++++|.++.+.+.+++.++....+...+ .++++..+|..+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-------------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-------------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred CEEEEcCCcCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 37999999999999999884 5679999999998888877765443211111 367888898777
Q ss_pred -CCCCCCCCceeeeeeccc
Q psy889 77 -LPIESDSYSAYTIAFGIR 94 (167)
Q Consensus 77 -l~~~~~~fd~~~~~~~~~ 94 (167)
++-....||.+.+.++.+
T Consensus 157 ~L~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMFP 175 (258)
T ss_dssp HSTTCSSCCSEEEECCCCC
T ss_pred HHHhCcccCCEEEEcCCCC
Confidence 442223688887776664
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.5e-06 Score=63.79 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=65.7
Q ss_pred eEEeeecCCCchHHHHHHhhcc----CCCCCCCCCCCCcEEEeeCCh---HHHH-----------HHHHHHHhcccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDK----LPPNTLSEHCAPHVTVADINR---AMLD-----------VGEQRARDLFKVPVP 63 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~D~s~---~~~~-----------~a~~~~~~~~~~~~~ 63 (167)
+|||+|+|+|..+..+++.+.+ .+ ... ....+++++|..+ +.+. .+++....+ +.+
T Consensus 63 ~ILEiGfGtG~n~l~~~~~~~~~~~~~p-~~~--~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w---~~~ 136 (257)
T 2qy6_A 63 VVAESGFGTGLNFLTLWQAFDQFREAHP-QAQ--LQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQW---PMP 136 (257)
T ss_dssp EEEESCCTTSHHHHHHHHHHHHHHHHCT-TSS--CCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTC---CCS
T ss_pred EEEEECCChHHHHHHHHHHHHhhhhhCC-CCC--cceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhc---ccc
Confidence 7999999999999888775400 01 000 0025899999876 4444 334333321 100
Q ss_pred CCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCC-CCCCcc----chhhHhhh-hccccccc--H
Q psy889 64 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESD----SYSAYTIA-FGIRNVTR--I 135 (167)
Q Consensus 64 ~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~----~~D~v~~~-~~~~~~~~--~ 135 (167)
-+.. . +.. +.....++.+..+|..+ ++.... .||+|+.- +.-..-++ -
T Consensus 137 ~~g~-----------------~----r~~---~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~ 192 (257)
T 2qy6_A 137 LPGC-----------------H----RLL---LDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT 192 (257)
T ss_dssp CSEE-----------------E----EEE---EC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC
T ss_pred ccch-----------------h----hee---ccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC
Confidence 0000 0 000 00011245666666554 332222 68888762 11111223 3
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q psy889 136 DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~ 154 (167)
..+|+.+++.|+|||.|+.
T Consensus 193 ~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 193 QNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEE
Confidence 5789999999999999874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-06 Score=85.41 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=56.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|+|||+|.|+|..+..+++.+...+ ....+|+.+|+|+...+.++++++...
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~------~~~~~yt~td~s~~~~~~a~~~f~~~d---------------------- 1293 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQP------VMDLDYTATDRNPQALEAAQAKLEQLH---------------------- 1293 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSS------SCEEEEEEECSSSSSTTTTTTTHHHHT----------------------
T ss_pred ceEEEECCCccHHHHHHHHhhcccC------cccceEEEecCChHHHHHHHHHhhhcc----------------------
Confidence 5899999999999888887763100 013579999999988888887764321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
+.....|.... ++....||+|++.+++|..+++...++++++.|||||++++.+.
T Consensus 1294 ----------------------i~~~~~d~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1294 ----------------------VTQGQWDPANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ----------------------EEEECCCSSCCCC-----CCEEEEECC--------------------CCEEEEEEC
T ss_pred ----------------------cccccccccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 11111122221 22445699999999999888999999999999999999998764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.1e-05 Score=61.35 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=70.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH--------------------------HHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA--------------------------MLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~--------------------------~~~~a~~~~~ 55 (167)
+|||+|+..|..+..++..+.... .++.+++++|..+. .++.++++++
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g------~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHD------VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT------CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred cEEEeecCchHHHHHHHHHhHhcC------CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 699999999999998877653100 01578999996422 3566777776
Q ss_pred hcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCC-CC-CCccchhhHhhhhcccccc
Q psy889 56 DLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVT 133 (167)
Q Consensus 56 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~~~~~~ 133 (167)
..+. .. .++.++.++..+ ++ ....+||+|.+-.. ...
T Consensus 183 ~~gl---~~------------------------------------~~I~li~Gda~etL~~~~~~~~d~vfIDaD--~y~ 221 (282)
T 2wk1_A 183 NYDL---LD------------------------------------EQVRFLPGWFKDTLPTAPIDTLAVLRMDGD--LYE 221 (282)
T ss_dssp HTTC---CS------------------------------------TTEEEEESCHHHHSTTCCCCCEEEEEECCC--SHH
T ss_pred HcCC---Cc------------------------------------CceEEEEeCHHHHHhhCCCCCEEEEEEcCC--ccc
Confidence 6553 01 345566555433 22 22346777765331 223
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.....|..++..|+|||++++=++
T Consensus 222 ~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 222 STWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HHHHHHHHHGGGEEEEEEEEESSC
T ss_pred cHHHHHHHHHhhcCCCEEEEEcCC
Confidence 346778889999999999998554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.9e-06 Score=65.15 Aligned_cols=34 Identities=6% Similarity=-0.050 Sum_probs=26.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+|||.|..+..++.... ...++|+|++..
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~g-----------v~sV~GvdvG~d 125 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKN-----------VKKVMAFTLGVQ 125 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCT
T ss_pred CEEEEeCCCCCHHHHHHHHhcC-----------CCeeeeEEeccC
Confidence 4799999999999998876442 446889998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5.7e-05 Score=58.99 Aligned_cols=44 Identities=7% Similarity=-0.040 Sum_probs=39.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.+|||++||+|.++.+++. .+.+++|+|+++.+++.+++++...
T Consensus 237 ~~vlD~f~GsGt~~~~a~~-------------~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAAR-------------WGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CEEEETTCTTTHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH-------------cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3699999999999999876 3678999999999999999998754
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=59.41 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
|++||+||++|+.|..+++ .+++++++|..+
T Consensus 213 ~~vlDLGAaPGGWT~~l~~-------------rg~~V~aVD~~~ 243 (375)
T 4auk_A 213 MWAVDLGACPGGWTYQLVK-------------RNMWVYSVDNGP 243 (375)
T ss_dssp CEEEEETCTTCHHHHHHHH-------------TTCEEEEECSSC
T ss_pred CEEEEeCcCCCHHHHHHHH-------------CCCEEEEEEhhh
Confidence 6899999999999999987 478999999764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.1e-05 Score=60.55 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=37.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+||-+|.|.|..++.++++- ..+++.+|+++..++.+++.+.
T Consensus 208 rVLIIGgGdG~~~revlkh~------------~~~V~~VEIDp~VVe~ar~yfp 249 (381)
T 3c6k_A 208 DVLILGGGDGGILCEIVKLK------------PKMVTMVEIDQMVIDGCKKYMR 249 (381)
T ss_dssp EEEEEECTTCHHHHHHHTTC------------CSEEEEEESCHHHHHHHHHHCC
T ss_pred eEEEECCCcHHHHHHHHhcC------------CceeEEEccCHHHHHHHHhhch
Confidence 79999999999999998863 4689999999999999998754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0006 Score=57.53 Aligned_cols=88 Identities=8% Similarity=-0.074 Sum_probs=55.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCC--CCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS--EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~- 78 (167)
+|+|.+||+|++...+.+++......... ......++|.|+++.+...|+.+.--++. ..+ ....+|...-+
T Consensus 220 ~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~---~~~--~I~~~dtL~~~~ 294 (530)
T 3ufb_A 220 SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL---EYP--RIDPENSLRFPL 294 (530)
T ss_dssp CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC---SCC--EEECSCTTCSCG
T ss_pred EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC---ccc--cccccccccCch
Confidence 79999999999998888776421100000 00124699999999999999988765554 112 22334433322
Q ss_pred ---CCCCCCceeeeeeccc
Q psy889 79 ---IESDSYSAYTIAFGIR 94 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~ 94 (167)
.+...||.++..+|..
T Consensus 295 ~~~~~~~~fD~Il~NPPf~ 313 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFG 313 (530)
T ss_dssp GGCCGGGCBSEEEECCCSS
T ss_pred hhhcccccceEEEecCCCC
Confidence 2345688888887773
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=7.7e-05 Score=58.27 Aligned_cols=34 Identities=9% Similarity=-0.116 Sum_probs=26.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+||++|+.+..+++... ...++|+|+...
T Consensus 83 ~~vlDLGaaPGgWsqva~~~~g-----------v~sV~Gvdlg~~ 116 (300)
T 3eld_A 83 GRVLDLGCGRGGWSYYAAAQKE-----------VMSVKGYTLGIE 116 (300)
T ss_dssp EEEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCT
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-----------CceeeeEEeccc
Confidence 4799999999999999987542 346788888653
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00018 Score=50.68 Aligned_cols=36 Identities=6% Similarity=-0.183 Sum_probs=30.8
Q ss_pred CeEEeeecCCC-chHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHH
Q psy889 1 MYILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD 48 (167)
Q Consensus 1 ~~vLD~g~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 48 (167)
.+|||+|||.| ..+..++++. +.+++++|+++..++
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~------------g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHS------------KVDLVLTDIKPSHGG 73 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHS------------CCEEEEECSSCSSTT
T ss_pred CcEEEEccCCChHHHHHHHHhC------------CCeEEEEECCccccc
Confidence 38999999999 6998888644 788999999998776
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00079 Score=52.62 Aligned_cols=34 Identities=6% Similarity=-0.126 Sum_probs=27.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+||++|+.+..++.... ..+++|+|+...
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~g-----------v~~V~avdvG~~ 129 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQKR-----------VQEVRGYTKGGP 129 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCTT-----------EEEEEEECCCST
T ss_pred CEEEEeCCCCCcHHHHHHhhcC-----------CCEEEEEEcCCC
Confidence 3799999999999998776542 447999998653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0069 Score=48.54 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=46.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
.|||+|.|.|.+|..+++... ..+++++|+++.++...++.. . .++++.+.+|+..+
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~-----------~~~vvavE~D~~l~~~L~~~~-~-------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYC-----------PRQYSLLEKRSSLYKFLNAKF-E-------GSPLQILKRDPYDW 117 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHC-----------CSEEEEECCCHHHHHHHHHHT-T-------TSSCEEECSCTTCH
T ss_pred EEEEECCCCCHHHHHHHhhCC-----------CCEEEEEecCHHHHHHHHHhc-c-------CCCEEEEECCccch
Confidence 699999999999999998652 568999999999998888765 1 24778888887443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00043 Score=53.09 Aligned_cols=20 Identities=5% Similarity=-0.157 Sum_probs=18.1
Q ss_pred CeEEeeecCCCchHHHHHHh
Q psy889 1 MYILFYLVFPGDIAFRFLNY 20 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~ 20 (167)
++|+|+||+.|+-+..+++.
T Consensus 75 ~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 75 GKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp EEEEEETCTTSHHHHHHTTS
T ss_pred CEEEEcCCCCCHHHHHHhhh
Confidence 58999999999999998875
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00059 Score=51.84 Aligned_cols=33 Identities=6% Similarity=-0.121 Sum_probs=27.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
++|+|+||++|..+..++.... ..+++++|+..
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g-----------~~~V~avdvG~ 112 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKK-----------VTEVRGYTKGG 112 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTT-----------EEEEEEECCCS
T ss_pred CEEEEcCCCCCcHHHHHHHhcC-----------CCEEEEEecCC
Confidence 4799999999999998877552 45799999865
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0095 Score=48.04 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=54.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
|+|+|+.||.|.++..+.++. ...+.++|+++.+++..+.+.. ......+|+.++.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG------------~~~v~avE~d~~a~~t~~~N~~----------~~~~~~~DI~~~~~~ 60 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG------------FDVKMAVEIDQHAINTHAINFP----------RSLHVQEDVSLLNAE 60 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT------------CEEEEEECSCHHHHHHHHHHCT----------TSEEECCCGGGCCHH
T ss_pred CeEEEEccCcCHHHHHHHHCC------------CcEEEEEeCCHHHHHHHHHhCC----------CCceEecChhhcCHH
Confidence 689999999999999987743 2346699999999988887653 2345667777764
Q ss_pred -C-----CCCCCceeeeeecccccc
Q psy889 79 -I-----ESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 -~-----~~~~fd~~~~~~~~~~~~ 97 (167)
+ ....+|.+..+++=..+-
T Consensus 61 ~~~~~~~~~~~~D~i~ggpPCQ~fS 85 (376)
T 3g7u_A 61 IIKGFFKNDMPIDGIIGGPPCQGFS 85 (376)
T ss_dssp HHHHHHCSCCCCCEEEECCCCCTTC
T ss_pred HHHhhcccCCCeeEEEecCCCCCcc
Confidence 1 345677777776654443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.009 Score=47.50 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=53.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
++|+|+.||.|.++..+.+..- ....++++|+++.+++..+.+... .....+|+.++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~----------~~~~v~~~E~d~~a~~~~~~N~~~----------~~~~~~Di~~~~~~ 62 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCI----------PAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLE 62 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTC----------SEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHH
T ss_pred CeEEEeCcCccHHHHHHHHCCC----------CceEEEEEeCCHHHHHHHHHhccc----------cccccCCHHHccHh
Confidence 4799999999999999987531 013588999999999999987642 234567777764
Q ss_pred -CCCCCCceeeeeeccccc
Q psy889 79 -IESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~ 96 (167)
++...+|.+..+++=..+
T Consensus 63 ~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 63 EFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp HHHHHCCSEEEECCC----
T ss_pred HcCcCCcCEEEEcCCCcch
Confidence 222268888888875444
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.074 Score=42.12 Aligned_cols=126 Identities=5% Similarity=-0.055 Sum_probs=70.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|+.+|||......++.... .+.+++-+|. ++.++.-++.+...+..+ + ..+. .......
T Consensus 100 qVV~LGaGlDTr~~RL~~~~-----------~~~~~~EvD~-P~vi~~K~~~l~~~~~l~------~-~l~~-~~~~~~~ 159 (334)
T 1rjd_A 100 QVVNLGCGSDLRMLPLLQMF-----------PHLAYVDIDY-NESVELKNSILRESEILR------I-SLGL-SKEDTAK 159 (334)
T ss_dssp EEEEETCTTCCTHHHHHHHC-----------TTEEEEEEEC-HHHHHHHHHHHHHSHHHH------H-HHTC-CSSCCCC
T ss_pred EEEEeCCCCccHHHHhcCcC-----------CCCEEEECCC-HHHHHHHHHHhhhccchh------h-hccc-ccccccc
Confidence 48999999999999997743 2456667776 777777777665432100 0 0000 0000000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCC---------CccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI---------ESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
. .......+..++..|+.+..+ ......++++..++.+++ ...++++.+.+.. |+|
T Consensus 160 ~------------~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~ 226 (334)
T 1rjd_A 160 S------------PFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHG 226 (334)
T ss_dssp T------------TEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSE
T ss_pred c------------ccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCc
Confidence 0 000001345556666554211 223456777777777664 4678888888776 788
Q ss_pred EEEEEeeccc
Q psy889 151 RFLCLEFSHV 160 (167)
Q Consensus 151 ~l~~~~~~~~ 160 (167)
.+++.|.-.+
T Consensus 227 ~~v~~e~i~~ 236 (334)
T 1rjd_A 227 LWISYDPIGG 236 (334)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEeccCC
Confidence 8776676544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.47 E-value=0.055 Score=42.70 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=55.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
++|+|+.||.|.++..+.+.. ...+.++|+++.+++..+.+.... ..+|+.++. -
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG------------~~~v~~~e~d~~a~~t~~~N~~~~------------~~~Di~~~~~~ 67 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCG------------AECVYSNEWDKYAQEVYEMNFGEK------------PEGDITQVNEK 67 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTT------------CEEEEEECCCHHHHHHHHHHHSCC------------CBSCGGGSCGG
T ss_pred CcEEEECCCcCHHHHHHHHCC------------CeEEEEEeCCHHHHHHHHHHcCCC------------CcCCHHHcCHh
Confidence 479999999999999987742 334778999999999988876321 156777664 2
Q ss_pred CCCCCceeeeeeccccccCCC
Q psy889 80 ESDSYSAYTIAFGIRNIDIPN 100 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~ 100 (167)
....+|.+..+++-..+-..+
T Consensus 68 ~~~~~D~l~~gpPCQ~fS~ag 88 (327)
T 2c7p_A 68 TIPDHDILCAGFPCQAFSISG 88 (327)
T ss_dssp GSCCCSEEEEECCCTTTCTTS
T ss_pred hCCCCCEEEECCCCCCcchhc
Confidence 223589998888887765443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.013 Score=46.04 Aligned_cols=44 Identities=5% Similarity=-0.122 Sum_probs=38.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
.|||..||+|..+.+..+ .+.+++|+|+++.+++.+++|+....
T Consensus 255 ~VlDpF~GsGtt~~aa~~-------------~gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 255 LVVDIFGGSNTTGLVAER-------------ESRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp EEEETTCTTCHHHHHHHH-------------TTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred EEEECCCCCCHHHHHHHH-------------cCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 699999999999888766 36789999999999999999987554
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.022 Score=44.48 Aligned_cols=73 Identities=7% Similarity=0.089 Sum_probs=50.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
|+|+|+.||.|.++.-+-++. ...+.++|+++.+++.-+.+... +...+|+.++. -
T Consensus 1 mkvidLFsG~GG~~~G~~~aG------------~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~DI~~i~~~ 57 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG------------FRIICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSD 57 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT------------CEEEEEEECCTTTHHHHHHHCCS-----------EEEESCGGGCCGG
T ss_pred CeEEEeCcCccHHHHHHHHCC------------CEEEEEEeCCHHHHHHHHHHCCC-----------CcccCChhhCCHh
Confidence 899999999999999886642 23456999999999888876431 34567887775 2
Q ss_pred CCCCCceeeeeeccccc
Q psy889 80 ESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~ 96 (167)
+....|.++-+++=..+
T Consensus 58 ~~~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 58 EFPKCDGIIGGPPSQSW 74 (331)
T ss_dssp GSCCCSEEECCCCGGGT
T ss_pred hCCcccEEEecCCCCCc
Confidence 22345666555554433
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.02 Score=44.91 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 135 IDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 135 ~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.+.++.=+.++|+|||-|++--|....
T Consensus 196 ~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 196 FTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred HHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 356667789999999999986665444
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.018 Score=45.34 Aligned_cols=44 Identities=11% Similarity=-0.056 Sum_probs=36.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh---HHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR---AMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~---~~~~~a~~~~~~~~ 58 (167)
.|||..||+|..+.+.... +.+++|+|+++ ..++.+++|+...+
T Consensus 245 ~vlDpF~GsGtt~~aa~~~-------------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 245 TVLDFFAGSGVTARVAIQE-------------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp EEEETTCTTCHHHHHHHHH-------------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred EEEecCCCCCHHHHHHHHc-------------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 6999999999999888763 67899999999 99999999987554
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0082 Score=46.62 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=35.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.+||+-+|||.+++.+++ .+.+++.+|.++..+...++++.
T Consensus 94 ~~LDlfaGSGaLgiEaLS-------------~~d~~vfvE~~~~a~~~L~~Nl~ 134 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLR-------------SQDRLYLCELHPTEYNFLLKLPH 134 (283)
T ss_dssp SSCCEEECHHHHHHHHSC-------------TTSEEEEECCSHHHHHHHTTSCC
T ss_pred CceeEeCCcHHHHHHHcC-------------CCCeEEEEeCCHHHHHHHHHHhC
Confidence 479999999999999887 36789999999999998887764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.061 Score=42.49 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=53.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcE-EEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHV-TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~- 78 (167)
++++|+.||.|.++..+.++.- ....+ .++|+++.+++..+.+.... ...+|+.++.
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~----------~~~~v~~a~e~d~~a~~ty~~N~~~~-----------~~~~DI~~~~~ 69 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSI----------NINATFIPFDINEIANKIYSKNFKEE-----------VQVKNLDSISI 69 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSC----------CCCEEEEEECCCHHHHHHHHHHHCCC-----------CBCCCTTTCCH
T ss_pred CEEEEECCChhHHHHHHHHcCC----------CceEEEEEEECCHHHHHHHHHHCCCC-----------cccCChhhcCH
Confidence 4799999999999999877430 01345 69999999999888876422 3467777764
Q ss_pred --CCCCCCceeeeeeccccc
Q psy889 79 --IESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~ 96 (167)
++...+|.+..+++=..+
T Consensus 70 ~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 70 KQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp HHHHHTCCCEEEECCCCTTC
T ss_pred HHhccCCCCEEEecCCccCc
Confidence 333367888877775544
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.045 Score=43.33 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=53.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
++++|+.||.|.++..+.++.- ....+.++|+++..++..+.+.... ....+|+.++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~----------~~~~v~a~e~d~~a~~ty~~N~~~~----------~~~~~DI~~~~~~ 63 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGL----------DGEIVAAVDINTVANSVYKHNFPET----------NLLNRNIQQLTPQ 63 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTC----------SEEEEEEECCCHHHHHHHHHHCTTS----------CEECCCGGGCCHH
T ss_pred CEEEEECcCccHHHHHHHHcCC----------CceEEEEEeCCHHHHHHHHHhCCCC----------ceeccccccCCHH
Confidence 4799999999999999877531 0134679999999998888775422 23567777764
Q ss_pred -CCCCCCceeeeeecccccc
Q psy889 79 -IESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~ 97 (167)
++...+|.+..+++=..+-
T Consensus 64 ~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 64 VIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp HHHHTTCCEEEECCCCCCSE
T ss_pred HhccCCCCEEEecCCCcchh
Confidence 3333678887777755443
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.093 Score=42.59 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=38.3
Q ss_pred eEEeeecCCCchHHHHHH-hhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLN-YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
.|+|+||+.|..+..++. ... ...+++++|.++...+..+++...
T Consensus 229 ~viDvGAn~G~~s~~~a~~~~~----------~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 229 KMVDCGASIGESLAGLIGVTKG----------KFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp EEEEETCTTSHHHHHHHHHHTS----------CCSEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC----------CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 689999999999999884 332 237899999999999999998875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.075 Score=42.15 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=30.1
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-+|+|. |..+..+++.. +. +++++|.+++.++.+++
T Consensus 193 ~VlV~GaG~vG~~a~qlak~~------------Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 193 SFVTWGAGAVGLSALLAAKVC------------GASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp EEEEESCSHHHHHHHHHHHHH------------TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEECCCHHHHHHHHH
Confidence 688888765 66677777765 56 69999999998888864
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.07 Score=40.79 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=40.0
Q ss_pred CceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 101 PRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 101 ~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.++.++.++..+. + .+...+|++.+-. +........+..++..|+|||++++=+++.+.
T Consensus 158 ~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~--D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~ 222 (257)
T 3tos_A 158 QRSVLVEGDVRETVPRYLAENPQTVIALAYFDL--DLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK 222 (257)
T ss_dssp CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC--CCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT
T ss_pred CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC--cccchHHHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 6788888776542 1 1233577776533 22345677888999999999999998776543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.17 Score=39.36 Aligned_cols=76 Identities=8% Similarity=0.063 Sum_probs=52.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc---EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH---VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
++++|+.||.|.++..+.+. +.+ +.++|+++..++..+.+... .....+|+.++
T Consensus 17 ~~vidLFaG~GG~~~g~~~a-------------G~~~~~v~a~E~d~~a~~ty~~N~~~----------~~~~~~DI~~i 73 (295)
T 2qrv_A 17 IRVLSLFDGIATGLLVLKDL-------------GIQVDRYIASEVCEDSITVGMVRHQG----------KIMYVGDVRSV 73 (295)
T ss_dssp EEEEEETCTTTHHHHHHHHT-------------TBCEEEEEEECCCHHHHHHHHHHTTT----------CEEEECCGGGC
T ss_pred CEEEEeCcCccHHHHHHHHC-------------CCccceEEEEECCHHHHHHHHHhCCC----------CceeCCChHHc
Confidence 47999999999999998774 333 58999999998877766431 23456777776
Q ss_pred C---CC-CCCCceeeeeeccccccCC
Q psy889 78 P---IE-SDSYSAYTIAFGIRNIDIP 99 (167)
Q Consensus 78 ~---~~-~~~fd~~~~~~~~~~~~~~ 99 (167)
. ++ ...+|.+..+++=..+-..
T Consensus 74 ~~~~i~~~~~~Dll~ggpPCQ~fS~a 99 (295)
T 2qrv_A 74 TQKHIQEWGPFDLVIGGSPCNDLSIV 99 (295)
T ss_dssp CHHHHHHTCCCSEEEECCCCGGGBTT
T ss_pred cHHHhcccCCcCEEEecCCCcccccc
Confidence 4 11 2357777777666555433
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.79 Score=35.76 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=63.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-|+++|||-=.....+.. . .+.+++-+| .+..++..++.+...+. .+.
T Consensus 105 QvV~LGaGlDTra~Rl~~--~----------~~~~v~evD-~P~vi~~k~~lL~~~~~--~~~----------------- 152 (310)
T 2uyo_A 105 QFVILASGLDSRAYRLDW--P----------TGTTVYEID-QPKVLAYKSTTLAEHGV--TPT----------------- 152 (310)
T ss_dssp EEEEETCTTCCHHHHSCC--C----------TTCEEEEEE-CHHHHHHHHHHHHHTTC--CCS-----------------
T ss_pred eEEEeCCCCCchhhhccC--C----------CCcEEEEcC-CHHHHHHHHHHHHhcCC--CCC-----------------
Confidence 389999998777555532 1 257888899 68888888888764332 122
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC---------CCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---------IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
.+..++..|+.+ . +.....-++++..++++++ ....+++.+...+.||+
T Consensus 153 -------------------~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs 212 (310)
T 2uyo_A 153 -------------------ADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS 212 (310)
T ss_dssp -------------------SEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred -------------------CCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCe
Confidence 233444444433 1 1111223444455555554 36778888888888999
Q ss_pred EEEEEee
Q psy889 151 RFLCLEF 157 (167)
Q Consensus 151 ~l~~~~~ 157 (167)
++++-.+
T Consensus 213 ~l~~d~~ 219 (310)
T 2uyo_A 213 RIAVETS 219 (310)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 8888443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.2 Score=39.42 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=27.6
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|. |..+..++++. +. +++++|.+++-++.+++
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~------------Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 169 TVCVIGIGPVGLMSVAGANHL------------GAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp CEEEECCSHHHHHHHHHHHTT------------TCSSEEEECCCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCcEEEEECCCHHHHHHHHH
Confidence 567777653 55555556544 56 79999999988888775
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.19 Score=39.32 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=29.6
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +.+++++|.+++-.+.+++
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 169 WVVISGIGGLGHVAVQYARAM------------GLRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp EEEEECCSTTHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCeEEEEeCCHHHHHHHHH
Confidence 577777754 66666666655 7799999999998887764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.095 Score=41.19 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=28.6
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +.+++++|.+++-.+.+++
T Consensus 179 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 179 KVGVAGFGGLGSMAVKYAVAM------------GAEVSVFARNEHKKQDALS 218 (348)
T ss_dssp EEEEESCSHHHHHHHHHHHHT------------TCEEEEECSSSTTHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCeEEEEeCCHHHHHHHHh
Confidence 577777654 55566666654 7799999999988887764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.38 E-value=0.15 Score=36.47 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=22.8
Q ss_pred chhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 119 ~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+|+++.... ...+.++.+.|+++|+++.+..
T Consensus 107 ~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 107 GVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp CEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred CCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 4677764321 2467888999999999987654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.19 Score=39.92 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=28.0
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=.|+|. |..+..++++. +. +++++|.+++-.+.+++
T Consensus 185 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~a~~ 225 (370)
T 4ej6_A 185 TVAILGGGVIGLLTVQLARLA------------GATTVILSTRQATKRRLAEE 225 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHH
Confidence 566677643 55566666654 66 89999999988888775
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.26 Score=38.82 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.8
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 174 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 174 KVLVCGAGPIGMVTLLVAKAM------------GAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHH
Confidence 678888754 56666666654 66 89999999988877763
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.35 Score=38.10 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~ 53 (167)
+||=.|+|. |..+..+++.. +.+ ++++|.+++-.+.+++.
T Consensus 182 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 182 PVLICGAGPIGLITMLCAKAA------------GACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------------TCCSEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHHh
Confidence 566677643 55666666654 665 99999999999888864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.43 E-value=0.57 Score=36.68 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=27.9
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++
T Consensus 171 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 171 TVLVIGAGPIGLVSVLAAKAY------------GAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHH
Confidence 577788653 55555666554 6789999999988887763
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=89.52 E-value=0.21 Score=40.36 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=49.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
+|+|+|+|.|.++..+++.+...+. .. ...+++.+|+|+...+.-++++... ++++|.. +.+++|
T Consensus 83 ~ivElGaG~GtLa~diL~~l~~~p~-~~---~~~~y~iVE~Sp~Lr~~Q~~~L~~~-------~~v~W~~-~l~~lp~~~ 150 (387)
T 1zkd_A 83 RLIEIGPGRGTMMADALRALRVLPI-LY---QSLSVHLVEINPVLRQKQQTLLAGI-------RNIHWHD-SFEDVPEGP 150 (387)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHH-HH---TTEEEEEECCCHHHHHHHHHHSTTC-------SSEEEES-SGGGSCCSS
T ss_pred EEEEECCCcchHHHHHHHHHHhCCc-cc---cccEEEEEecCHHHHHHHHHHhcCC-------CCeEEeC-ChhhcCCCC
Confidence 5899999999999999987642110 00 2357999999999888777665432 1466753 233333
Q ss_pred ---CCCCCCceeeee
Q psy889 79 ---IESDSYSAYTIA 90 (167)
Q Consensus 79 ---~~~~~fd~~~~~ 90 (167)
+.++-||...+.
T Consensus 151 ~~viANE~fDAlPv~ 165 (387)
T 1zkd_A 151 AVILANEYFDVLPIH 165 (387)
T ss_dssp EEEEEESSGGGSCCE
T ss_pred eEEEeccccccCceE
Confidence 556666654443
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=0.43 Score=39.14 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=52.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccc----cC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE----EL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~l 77 (167)
+|+|+|+|+|.++..+++.+..... ...+++.+|+|+.+.+.-++++.... +.-..+++|... .. .+
T Consensus 140 ~ivE~GaG~GtLa~DiL~~l~~~~~------~~~~y~iVE~Sp~Lr~~Q~~~L~~~~--~~~~~~v~W~~~-lP~~~~g~ 210 (432)
T 4f3n_A 140 RVMEFGAGTGKLAAGLLTALAALGV------ELDEYAIVDLSGELRARQRETLGAQA--PGLAARVRWLDA-LPERFEGV 210 (432)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTC------CCSEEEEECTTSSSHHHHHHHHHHHS--TTTGGGEEEESS-CCSCEEEE
T ss_pred eEEEeCCCccHHHHHHHHHHHhcCC------CCceEEEEEcCHHHHHHHHHHHhccc--cccCCCceeccc-CCccCceE
Confidence 6899999999999999988753211 13479999999999988888876421 111235677542 11 11
Q ss_pred CCCCCCCceeeee
Q psy889 78 PIESDSYSAYTIA 90 (167)
Q Consensus 78 ~~~~~~fd~~~~~ 90 (167)
-+.++-||...+.
T Consensus 211 iiANE~fDAlPv~ 223 (432)
T 4f3n_A 211 VVGNEVLDAMPVR 223 (432)
T ss_dssp EEEESCGGGSCCE
T ss_pred EEeehhhccCcee
Confidence 2555666654443
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.07 E-value=0.26 Score=38.99 Aligned_cols=40 Identities=15% Similarity=-0.027 Sum_probs=28.3
Q ss_pred eEEeee--cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=.| .+.|..+..+++... +.+++++|.+++-++.+++
T Consensus 174 ~VlV~Ga~G~vG~~a~qlak~~~-----------g~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 174 AILIVGGAGGVGSIAVQIARQRT-----------DLTVIATASRPETQEWVKS 215 (363)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHC-----------CSEEEEECSSHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHH
Confidence 355555 344666777777642 7899999999988887764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.05 E-value=0.18 Score=38.95 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=44.2
Q ss_pred ccccccccccc-CC-CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHH
Q psy889 66 RLRFLEANAEE-LP-IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 143 (167)
Q Consensus 66 ~~~~~~~d~~~-l~-~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~ 143 (167)
++++.++|..+ ++ ++.++||.+.+++|...... +... + .....+ ...-.++..+..++.+++
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~------y~~~-----~---~~~~~~--~~~~~~l~~l~~~~~~~~ 84 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKR------YEDT-----P---GQLGHI--EDYEAFLDELDRVWREVF 84 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC---------------------CCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccc------cCCC-----h---hhhccc--ccHHHHHHHHHHHHHHHH
Confidence 45677888777 44 66788999999988854221 1000 0 000000 000112344677889999
Q ss_pred HhcCCCcEEEEE
Q psy889 144 RVLKPGGRFLCL 155 (167)
Q Consensus 144 ~~LkpgG~l~~~ 155 (167)
++|||||.+++.
T Consensus 85 rvLk~~G~l~i~ 96 (297)
T 2zig_A 85 RLLVPGGRLVIV 96 (297)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHcCCCcEEEEE
Confidence 999999999873
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.63 Score=36.85 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=28.4
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+| .|..+..+++.. +. +++++|.+++-++.+++
T Consensus 196 ~VlV~GaG~vG~~a~q~a~~~------------Ga~~Vi~~~~~~~~~~~a~~ 236 (378)
T 3uko_A 196 NVAIFGLGTVGLAVAEGAKTA------------GASRIIGIDIDSKKYETAKK 236 (378)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------------TCSCEEEECSCTTHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEEcCCHHHHHHHHH
Confidence 56777765 356666666665 55 89999999988887763
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.94 Score=35.69 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=28.2
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 193 ~VlV~GaG~vG~~avqla~~~------------Ga~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 193 VCAVFGLGGVGLAVIMGCKVA------------GASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEEcCCHHHHHHHHH
Confidence 577777643 55566666655 56 79999999998888864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=88.09 E-value=0.9 Score=35.85 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=27.5
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 194 ~VlV~GaG~vG~~a~qla~~~------------Ga~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 194 TCAVFGLGGVGLSVIMGCKAA------------GAARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEEcCCHHHHHHHHH
Confidence 577777643 45555555554 66 79999999988888763
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=0.81 Score=35.75 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=27.0
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 170 ~VlV~GaG~vG~~~~q~a~~~------------Ga~~Vi~~~~~~~~~~~~~~ 210 (348)
T 2d8a_A 170 SVLITGAGPLGLLGIAVAKAS------------GAYPVIVSEPSDFRRELAKK 210 (348)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------------TCCSEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHH
Confidence 577788732 44555555544 66 89999999888877764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=0.9 Score=35.84 Aligned_cols=39 Identities=5% Similarity=-0.110 Sum_probs=28.3
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-+|+|. |..+..++++. +. +++++|.+++-++.+++
T Consensus 194 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 194 TCAVFGLGGVGFSAIVGCKAA------------GASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEECCCHHHHHHHHH
Confidence 577777643 55566666655 56 79999999988888764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.55 Score=37.03 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=27.7
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +.+++++|.+++-++.+++
T Consensus 192 ~VlV~G~G~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 192 RVVVQGTGGVALFGLQIAKAT------------GAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp EEEEESSBHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEecCchhHHHHHH
Confidence 567777543 45555555544 7899999999988888764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.54 E-value=0.79 Score=36.18 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=27.8
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 195 ~VlV~GaG~vG~~a~qla~~~------------Ga~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 195 TCAVFGLGAVGLAAVMGCHSA------------GAKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHH
Confidence 577777643 55555666554 66 79999999998888763
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=0.53 Score=36.50 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=22.3
Q ss_pred chhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 119 ~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+|+++.+.. ...+.++.+.|++||+++++..
T Consensus 214 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 214 GYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp CEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred CCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEec
Confidence 4677665432 1347788899999999987543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.77 Score=35.77 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=30.5
Q ss_pred eEEeeecC--CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+| .|..+..+++.. +.+++++|.+++-++.+++
T Consensus 147 ~VlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 147 VLLVNACGSAIGHLFAQLSQIL------------NFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp EEEESSTTSHHHHHHHHHHHHH------------TCEEEEEESSSTTHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHh
Confidence 57778776 567777777765 7899999999988888875
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.49 E-value=2.3 Score=33.96 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.3
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 216 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 216 NVVILGGGPIGLAAVAILKHA------------GASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHH
Confidence 466666532 45555555554 66 89999999988888875
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.26 Score=33.90 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCCCCccchhhHhhhhccc-c-cccHHHHHHHHHHhcCCCcEEEE
Q psy889 112 ELPIESDSYSAYTIAFGIR-N-VTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 112 ~~~~~~~~~D~v~~~~~~~-~-~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.+..+..+||.|+...--. . ..-.+.++..+++.|||||.|..
T Consensus 52 ~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 52 SITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 4556677888887643222 1 12238899999999999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=1.2 Score=34.44 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.6
Q ss_pred eEEeee--cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.| +|.|..+..+++.. +.++++++.+++-++.+++
T Consensus 143 ~VlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~ 183 (325)
T 3jyn_A 143 IILFHAAAGGVGSLACQWAKAL------------GAKLIGTVSSPEKAAHAKA 183 (325)
T ss_dssp EEEESSTTSHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH
Confidence 466665 34455666666655 7799999999988887764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=86.15 E-value=0.5 Score=36.45 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=28.2
Q ss_pred EEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 3 vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
||=.|+ +.|..+..+++.. +.++++++.+++-.+.+++
T Consensus 150 VlV~Ga~G~vG~~aiqla~~~------------Ga~Vi~~~~~~~~~~~~~~ 189 (324)
T 3nx4_A 150 VVVTGASGGVGSTAVALLHKL------------GYQVAAVSGRESTHGYLKS 189 (324)
T ss_dssp EEESSTTSHHHHHHHHHHHHT------------TCCEEEEESCGGGHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHh
Confidence 555554 5566667777655 7799999999998888875
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=86.00 E-value=0.64 Score=38.64 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=33.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++++|+.||.|+++.-+.+.. ...+.++|+++.+++.-+.+.
T Consensus 89 ~~viDLFaG~GGlslG~~~aG------------~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIG------------GQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTT------------EEEEEEECCCHHHHHHHHHHS
T ss_pred ceEEEecCCccHHHHHHHHCC------------CEEEEEEeCCHHHHHHHHHhc
Confidence 479999999999999987632 234779999999888877664
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=0.63 Score=36.22 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=26.5
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||-.|+ |.|..+..++... +.++++++.+++.++.++
T Consensus 158 ~vlI~Ga~g~iG~~~~~~a~~~------------G~~V~~~~~~~~~~~~~~ 197 (345)
T 2j3h_A 158 TVYVSAASGAVGQLVGQLAKMM------------GCYVVGSAGSKEKVDLLK 197 (345)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHH
Confidence 5777775 4455555555543 778999999988777765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=1.1 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=27.6
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+|. |..+..+++.. +. +++++|.+++-++.+++
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~------------Ga~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 198 TCAVFGLGCVGLSAIIGCKIA------------GASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCeEEEEcCCHHHHHHHHH
Confidence 577777642 45555566554 66 79999999988887763
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.57 E-value=1.2 Score=34.29 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=22.5
Q ss_pred chhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 119 ~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+|+++.... ...+..+.+.|+++|.++.+..
T Consensus 209 ~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 209 KVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp CEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred CceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 4677655332 3457788999999999987543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.49 E-value=0.77 Score=35.85 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=28.5
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+ |.|..+..+++.. +.++++++.+++-.+.+++
T Consensus 162 ~VlV~Gasg~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~ 202 (342)
T 4eye_A 162 TVLVLGAAGGIGTAAIQIAKGM------------GAKVIAVVNRTAATEFVKS 202 (342)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSGGGHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHh
Confidence 5676775 4456666666654 7899999999988887775
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=0.48 Score=36.82 Aligned_cols=37 Identities=8% Similarity=-0.125 Sum_probs=26.4
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a 50 (167)
+||-.|+ |.|..+..+++.. +.++++++.+++-++.+
T Consensus 152 ~vlI~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~ 190 (336)
T 4b7c_A 152 TVVISGAAGAVGSVAGQIARLK------------GCRVVGIAGGAEKCRFL 190 (336)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHH
Confidence 5777776 4455555555544 77999999998877776
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=1.1 Score=35.18 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.++.+.|+++|.++.+..
T Consensus 254 ~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 254 KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCEEEEEeC
Confidence 467888999999999987654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=0.74 Score=35.74 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=26.8
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+ |.|..+..+++.. +.++++++.+++-++.+++
T Consensus 151 ~vlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 151 YVLLFAAAGGVGLILNQLLKMK------------GAHTIAVASTDEKLKIAKE 191 (334)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH
Confidence 4666663 4455555555544 7899999999888877764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.36 E-value=9 Score=28.31 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=29.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (167)
|+||=.| + |.++.++++.+.. .+.++++++.++.....
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~---------~g~~V~~~~r~~~~~~~ 43 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAP---------QGWRIIGTSRNPDQMEA 43 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGG---------GTCEEEEEESCGGGHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHH---------CCCEEEEEEcChhhhhh
Confidence 5788888 4 9999999998753 47789999998765443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=1.2 Score=35.01 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=27.9
Q ss_pred eEEeee--cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.| .|.|..+..+++.. +.++++++.+++-++.+++
T Consensus 166 ~VlV~Ga~G~iG~~~~q~a~~~------------Ga~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 166 KVLVTAAAGGTGQFAMQLSKKA------------KCHVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp EEEETTTTBTTHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHhC------------CCEEEEEECCHHHHHHHHH
Confidence 566666 45566666666654 6789999999888777764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=4.7 Score=29.76 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=28.3
Q ss_pred EEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|=.|++. ..++.++++.+.. .+.+++.++.+....+..++...
T Consensus 10 vlVTGasg~~GIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~ 54 (266)
T 3oig_A 10 IVVMGVANKRSIAWGIARSLHE---------AGARLIFTYAGERLEKSVHELAG 54 (266)
T ss_dssp EEEECCCSTTSHHHHHHHHHHH---------TTCEEEEEESSGGGHHHHHHHHH
T ss_pred EEEEcCCCCCcHHHHHHHHHHH---------CCCEEEEecCchHHHHHHHHHHH
Confidence 44444432 2477777777642 47889999988766666655444
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=1.9 Score=33.63 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCcEEE
Q psy889 136 DKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~ 153 (167)
..+|+++++.++|||.|.
T Consensus 206 ~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 206 LDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEE
Confidence 578999999999999885
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=0.5 Score=40.51 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=31.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCC-CCCCcEEEeeC---ChHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE-HCAPHVTVADI---NRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~D~---s~~~~~~a~ 51 (167)
+|+|+|-|+|...+...+.+.+..+.+|+. ....+++++|. +.+-+..+.
T Consensus 69 ~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~ 122 (676)
T 3ps9_A 69 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAH 122 (676)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHH
Confidence 799999999998888877653110000000 02467999998 666666443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=1.3 Score=34.61 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=22.6
Q ss_pred chhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 119 ~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+|+++.... ...+..+.+.|+++|+++++..
T Consensus 230 ~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 230 GVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp CEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 4666654332 2567888999999999987544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.33 E-value=4.6 Score=31.15 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEeec
Q psy889 136 DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
...+....+.|++||.+++....
T Consensus 240 ~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 240 PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp HHHHHHHHHHCCTTCEEEECCCC
T ss_pred cchhhhhhheecCCeEEEEEecc
Confidence 45678889999999999885543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.30 E-value=1.6 Score=34.21 Aligned_cols=38 Identities=8% Similarity=-0.173 Sum_probs=25.1
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||-.|+ |.|..+..++... +.++++++.+++.++.++
T Consensus 173 ~vlV~GasggiG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~ 212 (351)
T 1yb5_A 173 SVLVHGASGGVGLAACQIARAY------------GLKILGTAGTEEGQKIVL 212 (351)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC------------CCEEEEEeCChhHHHHHH
Confidence 5676765 3344444444433 788999999988777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 167 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-05 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.003 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.004 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.004 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 41.1 bits (95), Expect = 2e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ T + + + + KA+ E RVLK GRFL ++ + +L
Sbjct: 83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 40.2 bits (93), Expect = 4e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
D Y + ++T + L + +K GG+ +C E
Sbjct: 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 1e-04
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTI-AFGIRNVTRIDKALSEAYRVLKPGGR 151
++ + + + I +D L E + +K GGR
Sbjct: 202 MKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGR 261
Query: 152 FLCLE 156
+ +
Sbjct: 262 IVSSK 266
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 109 NAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
+ E + + + V I L + +L + L + S +
Sbjct: 113 SRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.002
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 63 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSA 122
R+ E + + +Y + ++ + +++ + F+ + + S +
Sbjct: 122 SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTF 181
Query: 123 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+A + N L Y LK GG
Sbjct: 182 DAVALDMLNP---HVTLPVFYPHLKHGGVCAV 210
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 34.7 bits (79), Expect = 0.003
Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
N L+ + + ++ + ++K + + + K G + + L+
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 34.2 bits (77), Expect = 0.004
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 123 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
T + +SEAYRVLK GG+ L ++ S N
Sbjct: 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 129
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 34.0 bits (77), Expect = 0.004
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
S Y + R + + + L +A +L PGGR + + F + + +++
Sbjct: 104 GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKE 152
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 167 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.81 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.78 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.76 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.75 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.74 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.74 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.73 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.72 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.72 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.71 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.7 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.67 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.65 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.61 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.6 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.59 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.58 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.58 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.58 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.55 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.53 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.53 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.48 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.48 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.47 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.47 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.41 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.4 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.35 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.35 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.35 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.34 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.28 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.25 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.24 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.23 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.22 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.15 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.04 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.03 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.02 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.98 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.98 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.97 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.95 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.9 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.88 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.84 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.83 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.82 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.79 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.75 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.71 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.63 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.51 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.45 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.4 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.39 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.38 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.38 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.36 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.36 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.34 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.28 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.26 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.21 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.16 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.15 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.09 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.07 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.76 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.7 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.69 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.59 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.58 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.53 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.35 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.76 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.31 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.29 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.13 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.64 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.54 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.44 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.27 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.25 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.21 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.36 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.18 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.89 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.81 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.11 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.53 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.81 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.12 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.01 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.98 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.71 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.23 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.16 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.3 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.9 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.23 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.87 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.6 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.48 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.39 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.31 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.0 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.56 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 81.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.9 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.73 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=4.8e-23 Score=155.17 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=99.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||+|.++..+++. +.+++|+|+|+.|++.|++++...+.
T Consensus 18 ~rILDiGcGtG~~~~~la~~-------------~~~v~gvD~S~~~l~~A~~~~~~~~~--------------------- 63 (234)
T d1xxla_ 18 HRVLDIGAGAGHTALAFSPY-------------VQECIGVDATKEMVEVASSFAQEKGV--------------------- 63 (234)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEeCCcCcHHHHHHHHh-------------CCeEEEEeCChhhhhhhhhhhccccc---------------------
Confidence 58999999999999999874 46799999999999999999877665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+.++|.+++++.+++||+|+|..++++++++..++++++++|||||++++.++..+
T Consensus 64 --------------------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 64 --------------------ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp --------------------CSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred --------------------ccccccccccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 578899999999999999999999999999999999999999999999999999988877
Q ss_pred CCcc
Q psy889 161 NNSM 164 (167)
Q Consensus 161 ~~~~ 164 (167)
+++.
T Consensus 124 ~~~~ 127 (234)
T d1xxla_ 124 EDPV 127 (234)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 6654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=4.2e-23 Score=154.55 Aligned_cols=110 Identities=23% Similarity=0.343 Sum_probs=99.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||+|.++..+++. +.+++|+|+|+.|++.|++++...+.
T Consensus 17 ~rVLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~i~~A~~~~~~~~~--------------------- 62 (231)
T d1vl5a_ 17 EEVLDVATGGGHVANAFAPF-------------VKKVVAFDLTEDILKVARAFIEGNGH--------------------- 62 (231)
T ss_dssp CEEEEETCTTCHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecccCcHHHHHHHHh-------------CCEEEEEECCHHHHhhhhhccccccc---------------------
Confidence 58999999999999999874 56899999999999999999877665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...+.+++++++++||+|+|..+++|+++..+++++++++|||||++++.+++.+
T Consensus 63 --------------------~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 63 --------------------QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp --------------------CSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred --------------------ccccccccccccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 678999999999998899999999999999999999999999999999999999998887
Q ss_pred CCcc
Q psy889 161 NNSM 164 (167)
Q Consensus 161 ~~~~ 164 (167)
++..
T Consensus 123 ~~~~ 126 (231)
T d1vl5a_ 123 ENDA 126 (231)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 6643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.84 E-value=5.1e-21 Score=147.80 Aligned_cols=110 Identities=16% Similarity=0.045 Sum_probs=99.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++++. +.+++|+|+|+.+++.|+++....+.
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~i~~a~~~~~~~gl--------------------- 115 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKF------------GVSIDCLNIAPVQNKRNEEYNNQAGL--------------------- 115 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEeCCCCcHHHhhhhccC------------CcEEEEEeccchhhhhhhcccccccc---------------------
Confidence 489999999999999999876 67899999999999999999887765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+..+|.+++++++++||+|++..+++++++...+|++++++|||||+|++.++...
T Consensus 116 -------------------~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 116 -------------------ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp -------------------TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -------------------cccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 2578999999999999999999999999999999999999999999999999999887655
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
+.
T Consensus 177 ~~ 178 (282)
T d2o57a1 177 DG 178 (282)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=1.7e-20 Score=139.13 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=90.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++.....
T Consensus 39 ~~ILDiGcG~G~~~~~la~-------------~~~~v~giD~S~~~i~~ak~~~~~~~---------------------- 83 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLED-------------YGFEVVGVDISEDMIRKAREYAKSRE---------------------- 83 (226)
T ss_dssp CEEEEETCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEECCCcchhhhhHhh-------------hhcccccccccccchhhhhhhhcccc----------------------
Confidence 3799999999999999987 36789999999999999999887554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.++..|..++++++++||+|+|..++++++ +..++|++++++|||||++++...+
T Consensus 84 --------------------~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 84 --------------------SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp --------------------CCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------------ccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 346777888888998899999999999999986 6788999999999999999986654
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 144 ~ 144 (226)
T d1ve3a1 144 L 144 (226)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3.3e-20 Score=140.41 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=95.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++.. +.+++|+|+|+.+++.++++....+.
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~------------~~~v~GvD~s~~~~~~ar~~~~~~gl--------------------- 81 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDH------------GITGTGIDMSSLFTAQAKRRAEELGV--------------------- 81 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHT------------CCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEcCCCCHHHHHHHHhc------------CCEEEEEecccchhhHHHHHHHHhhc---------------------
Confidence 589999999999999998765 67899999999999999999887765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
+.++.+...|..++ ..+++||+|+|..+++++++...++++++++|||||++++.+....
T Consensus 82 -------------------~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~ 141 (245)
T d1nkva_ 82 -------------------SERVHFIHNDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 141 (245)
T ss_dssp -------------------TTTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred -------------------cccchhhhhHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecccc
Confidence 25688999998887 4578899999999999999999999999999999999999876543
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 142 ~ 142 (245)
T d1nkva_ 142 Q 142 (245)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.2e-20 Score=136.10 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=93.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++... ..+++|+|+|+.|++.|++++...+.
T Consensus 63 ~vLDiGcG~G~~~~~l~~~~------------~~~v~~vD~s~~~l~~ak~~~~~~~~---------------------- 108 (222)
T d2ex4a1 63 CALDCGAGIGRITKRLLLPL------------FREVDMVDITEDFLVQAKTYLGEEGK---------------------- 108 (222)
T ss_dssp EEEEETCTTTHHHHHTTTTT------------CSEEEEEESCHHHHHHHHHHTGGGGG----------------------
T ss_pred EEEEeccCCCHhhHHHHHhc------------CCEEEEeecCHHHhhccccccccccc----------------------
Confidence 69999999999999887644 46799999999999999999876554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+.+.|+++++..+++||+|++..+++++++. ..++++++++|+|||.+++.+...
T Consensus 109 -------------------~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~ 169 (222)
T d2ex4a1 109 -------------------RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 169 (222)
T ss_dssp -------------------GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -------------------cccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence 46788899998888888999999999999998764 589999999999999999988776
Q ss_pred cCC
Q psy889 160 VNN 162 (167)
Q Consensus 160 ~~~ 162 (167)
.+.
T Consensus 170 ~~~ 172 (222)
T d2ex4a1 170 QEG 172 (222)
T ss_dssp SSS
T ss_pred ccc
Confidence 654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.78 E-value=3.4e-19 Score=133.14 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=90.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++++... ++.+++|+|+|+.|++.|+++......
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~---------~~~~v~giD~S~~ml~~A~~~~~~~~~--------------------- 90 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQ---------PNVKIIGIDNSQPMVERCRQHIAAYHS--------------------- 90 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCC---------SSCEEEEECSCHHHHHHHHHHHHTSCC---------------------
T ss_pred CEEEEeccchhhHHHHHHHhhcC---------CCCceEEeCCCHHHHHHHHHHhHhhcc---------------------
Confidence 37999999999999999986531 478999999999999999999875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...+..+.+ ...+|++++..+++++ .+..++|++++++|||||.+++.+..
T Consensus 91 -------------------~~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 91 -------------------EIPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp -------------------SSCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cchhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 134566666665554 3568999998888877 47889999999999999999999887
Q ss_pred ccCCc
Q psy889 159 HVNNS 163 (167)
Q Consensus 159 ~~~~~ 163 (167)
.++.+
T Consensus 150 ~~~~~ 154 (225)
T d1im8a_ 150 RFEDT 154 (225)
T ss_dssp CCSSH
T ss_pred ccccc
Confidence 76654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4e-19 Score=133.16 Aligned_cols=97 Identities=27% Similarity=0.285 Sum_probs=82.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++..
T Consensus 44 ~~vLDiGcG~G~~~~~l~~-------------~~~~v~giD~s~~~l~~a~~~~~------------------------- 85 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQE-------------RGFEVVLVDPSKEMLEVAREKGV------------------------- 85 (246)
T ss_dssp CEEEEETCTTCHHHHHHHT-------------TTCEEEEEESCHHHHHHHHHHTC-------------------------
T ss_pred CEEEEECCCCchhcccccc-------------cceEEEEeecccccccccccccc-------------------------
Confidence 3799999999999999987 36789999999999999997631
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.++.+++++++++||+|++. .+++++++..++|++++++|||||++++...
T Consensus 86 ----------------------~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 86 ----------------------KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp ----------------------SCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------------cccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 124467778888888999999975 5788999999999999999999999998653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.75 E-value=1e-18 Score=135.06 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. .+.+++|+|+|+.+++.|+++....+
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~----------~~~~v~giD~s~~~l~~a~~~~~~~~---------------------- 76 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLP----------EGSKYTGIDSGETLLAEARELFRLLP---------------------- 76 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSC----------TTCEEEEEECCHHHHHHHHHHHHSSS----------------------
T ss_pred CEEEEecCcCCHHHHHHHHhCC----------CCCEEEEEecchhHhhhhhccccccc----------------------
Confidence 4799999999999999988764 36789999999999999999887544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|...+++. ++||+|+|..+++++++...++++++++|||||.+++.+.
T Consensus 77 --------------------~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 77 --------------------YDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp --------------------SEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred --------------------cccccccccccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 2577888888887764 5799999999999999999999999999999999998773
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=2.1e-18 Score=130.10 Aligned_cols=98 Identities=23% Similarity=0.361 Sum_probs=82.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++++ +.+++|+|+|+.|++.|+++....+
T Consensus 44 ~iLDiGcGtG~~~~~l~~~-------------~~~v~gvD~s~~mi~~a~~~~~~~~----------------------- 87 (251)
T d1wzna1 44 RVLDLACGTGIPTLELAER-------------GYEVVGLDLHEEMLRVARRKAKERN----------------------- 87 (251)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTT-----------------------
T ss_pred EEEEeCCCCCccchhhccc-------------ceEEEEEeecccccccccccccccc-----------------------
Confidence 6999999999999999883 6789999999999999999987543
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-ccccc--ccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNV--TRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+..+|+++++++ +.||+|+|.. +++++ ++..++|++++++|||||++++.
T Consensus 88 -------------------~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 88 -------------------LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp -------------------CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------ccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3678888888888776 5899999864 44544 56789999999999999999884
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=3.5e-18 Score=125.31 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=89.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||+|..+..+++ .+.+++|+|+|+.+++.++++....+.
T Consensus 33 rvLDiGcG~G~~~~~la~-------------~g~~v~gvD~s~~~l~~a~~~~~~~~~---------------------- 77 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAA-------------NGYDVTAWDKNPASMANLERIKAAEGL---------------------- 77 (198)
T ss_dssp EEEEETCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHHTTC----------------------
T ss_pred cEEEECCCCCHHHHHHHH-------------HhhhhccccCcHHHHHHHHHHhhhccc----------------------
Confidence 799999999999999988 467899999999999999998877665
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...|+...+. ++.||+|++..++++++. ..+++++++++|+|||++++.++..
T Consensus 78 -------------------~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 78 -------------------DNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp -------------------TTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred -------------------cchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 567777888777665 578999999999998854 5689999999999999999977654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.73 E-value=4.4e-18 Score=129.16 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=85.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|+++......
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~------------~~~v~GiD~S~~~l~~A~~r~~~~~~--------------------- 72 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAG------------IGEYYGVDIAEVSINDARVRARNMKR--------------------- 72 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHT------------CSEEEEEESCHHHHHHHHHHHHTSCC---------------------
T ss_pred CEEEEecccCcHHHHHHHHcC------------CCeEEEecCCHHHHHHHHHHHHhcCC---------------------
Confidence 479999999999998887743 46799999999999999998875543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCC-CccchhhHhhhhccccc----ccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|....+. ...+||+|+|..+++++ .+.+.+|++++++|||||+|++.
T Consensus 73 -------------------~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 73 -------------------RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp -------------------SSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -------------------CcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 1467888888766554 46789999999998876 34678999999999999999986
Q ss_pred ee
Q psy889 156 EF 157 (167)
Q Consensus 156 ~~ 157 (167)
..
T Consensus 134 ~~ 135 (252)
T d1ri5a_ 134 VP 135 (252)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.72 E-value=4.1e-18 Score=129.92 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=89.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.|++.|+++....
T Consensus 95 ~~vLD~GcG~G~~t~~ll~~~------------~~~v~~vD~s~~~l~~a~~~~~~~----------------------- 139 (254)
T d1xtpa_ 95 SRALDCGAGIGRITKNLLTKL------------YATTDLLEPVKHMLEEAKRELAGM----------------------- 139 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHH------------CSEEEEEESCHHHHHHHHHHTTTS-----------------------
T ss_pred CeEEEecccCChhhHHHHhhc------------CceEEEEcCCHHHHHhhhcccccc-----------------------
Confidence 379999999999999988755 457999999999999999876432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.+...+++++++.+++||+|++..+++|+++. .++|++++++|+|||++++.+..
T Consensus 140 --------------------~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 140 --------------------PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp --------------------SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --------------------ccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 34778888888888888999999999999999764 58899999999999999998765
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 200 ~~ 201 (254)
T d1xtpa_ 200 ST 201 (254)
T ss_dssp C-
T ss_pred CC
Confidence 43
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3.8e-18 Score=125.56 Aligned_cols=93 Identities=25% Similarity=0.298 Sum_probs=81.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+.+ ++|+|+|+.+++.++++
T Consensus 39 ~vLDiGcG~G~~~~~~~~-----------------~~giD~s~~~~~~a~~~---------------------------- 73 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-----------------KIGVEPSERMAEIARKR---------------------------- 73 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-----------------CEEEESCHHHHHHHHHT----------------------------
T ss_pred eEEEECCCCcccccccce-----------------EEEEeCChhhccccccc----------------------------
Confidence 799999999998766532 68999999999998853
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
++.+.+.+.++++..+++||+|++..++++++++..++++++++|+|||.+++.+.+.
T Consensus 74 --------------------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 74 --------------------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp --------------------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred --------------------ccccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence 3677888888888888999999999999999999999999999999999999987654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.71 E-value=6.5e-18 Score=126.19 Aligned_cols=97 Identities=14% Similarity=0.251 Sum_probs=83.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++..
T Consensus 23 ~VLDiGcG~G~~~~~l~~-------------~g~~v~giD~s~~~i~~a~~~~~-------------------------- 63 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQE-------------HFNDITCVEASEEAISHAQGRLK-------------------------- 63 (225)
T ss_dssp CEEEESCTTSHHHHHHTT-------------TCSCEEEEESCHHHHHHHHHHSC--------------------------
T ss_pred cEEEEeCCCcHHHHHHHH-------------cCCeEEEEeCcHHHhhhhhcccc--------------------------
Confidence 799999999999998876 35689999999999999987642
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHH-HhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~ 157 (167)
.++.+...+.++.+. +.+||+|++..+++|+++...++.+++ ++|+|||.+++...
T Consensus 64 -------------------~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 64 -------------------DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp -------------------SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -------------------ccccccccccccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 357777777777665 478999999999999999999999998 78999999999653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.70 E-value=8.3e-18 Score=126.87 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=80.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++|+|+|+.|++.|+++....+.
T Consensus 40 ~vLDiGCG~G~~~~~l~~~-------------g~~v~GvD~S~~ml~~A~~~~~~~~~---------------------- 84 (246)
T d1y8ca_ 40 DYLDLACGTGNLTENLCPK-------------FKNTWAVDLSQEMLSEAENKFRSQGL---------------------- 84 (246)
T ss_dssp EEEEETCTTSTTHHHHGGG-------------SSEEEEECSCHHHHHHHHHHHHHTTC----------------------
T ss_pred eEEEEeCcCCHHHHHHHHh-------------CCccEeeccchhhhhhccccccccCc----------------------
Confidence 7999999999999999873 56899999999999999998875543
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hccccc---ccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNV---TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
++.+..+|+..++. .++||+|+|. .+++++ .+..++|++++++|+|||.|++
T Consensus 85 --------------------~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 85 --------------------KPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp --------------------CCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------cceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 57778888877665 4689999874 345544 4677899999999999999987
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.3e-16 Score=123.78 Aligned_cols=106 Identities=10% Similarity=-0.016 Sum_probs=89.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||.|.++..+++.. +.+++|+++|+..++.++++....+.
T Consensus 63 ~~VLDiGCG~G~~~~~~a~~~------------g~~v~git~s~~q~~~a~~~~~~~~l--------------------- 109 (291)
T d1kpia_ 63 MTLLDIGCGWGSTMRHAVAEY------------DVNVIGLTLSENQYAHDKAMFDEVDS--------------------- 109 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHSCC---------------------
T ss_pred CEEEEecCcchHHHHHHHHhc------------CcceeeccchHHHHHHHHHHHHhhcc---------------------
Confidence 589999999999999999877 68999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc---------HHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---------IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~ 151 (167)
..++.+...|.. ..+++||.|++..++.|+.+ .+.+|++++++|||||+
T Consensus 110 -------------------~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~ 167 (291)
T d1kpia_ 110 -------------------PRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 167 (291)
T ss_dssp -------------------SSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred -------------------chhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence 145666566543 34678999999988888754 57999999999999999
Q ss_pred EEEEeecccC
Q psy889 152 FLCLEFSHVN 161 (167)
Q Consensus 152 l~~~~~~~~~ 161 (167)
+++..++.++
T Consensus 168 ~~l~~i~~~~ 177 (291)
T d1kpia_ 168 MLLHTITIPD 177 (291)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeccC
Confidence 9998888654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.67 E-value=3.9e-17 Score=118.07 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=89.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|||+|..+..++++ +.+++|+|+|+.|++.|+++.+..... ....+
T Consensus 22 ~rvLd~GCG~G~~a~~la~~-------------G~~V~gvD~S~~~i~~a~~~~~~~~~~--------~~~~~------- 73 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQ-------------GYHVVGAELSEAAVERYFTERGEQPHI--------TSQGD------- 73 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHH-------------CCEEEEEEECHHHHHHHHHHHCSCSEE--------EEETT-------
T ss_pred CEEEEecCcCCHHHHHHHHc-------------CCceEeecccHHHHHHHHHHhccccch--------hhhhh-------
Confidence 48999999999999999983 789999999999999999988543220 00000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..........+...+..+++ .....||+|++..+++++.. ..+++++++++|||||.+++..+
T Consensus 74 --------------~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 74 --------------FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp --------------EEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred --------------hhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 00001134567777777664 33467999999988888754 67899999999999999988777
Q ss_pred cccCC
Q psy889 158 SHVNN 162 (167)
Q Consensus 158 ~~~~~ 162 (167)
.....
T Consensus 140 ~~~~~ 144 (201)
T d1pjza_ 140 EYDQA 144 (201)
T ss_dssp SSCSS
T ss_pred ccccc
Confidence 65543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=5.5e-17 Score=124.41 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++.
T Consensus 86 ~~iLDiGcG~G~~~~~l~~~~-----------~~~~~~giD~s~~~~~~a~~~~-------------------------- 128 (268)
T d1p91a_ 86 TAVLDIGCGEGYYTHAFADAL-----------PEITTFGLDVSKVAIKAAAKRY-------------------------- 128 (268)
T ss_dssp CEEEEETCTTSTTHHHHHHTC-----------TTSEEEEEESCHHHHHHHHHHC--------------------------
T ss_pred CEEEEeCCCCcHHHHHHHHHC-----------CCCEEEEecchHhhhhhhhccc--------------------------
Confidence 379999999999999999877 3788999999999999998753
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+..+|..++++.+++||+|++..+.++ +++++|+|||||++++...+.
T Consensus 129 --------------------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 129 --------------------PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp --------------------TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred --------------------ccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 3567788888888888899999988766554 568999999999999987653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=3.3e-16 Score=120.90 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||.|.++..++++. +.+++|+|+|+.+++.+++++...+.
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~~------------g~~v~gi~ls~~q~~~a~~~~~~~~l--------------------- 100 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVERF------------DVNVIGLTLSKNQHARCEQVLASIDT--------------------- 100 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTSCC---------------------
T ss_pred CEEEEecCCchHHHHHHHHhC------------ceeEEEecchHHHHHHHHHHHHhhcc---------------------
Confidence 589999999999999988876 67999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|.... +++||.|++..+++++. ..+.+|++++++|||||++++.++.
T Consensus 101 -------------------~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 101 -------------------NRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp -------------------SSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -------------------ccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 14556666665544 46799999999998885 4589999999999999999996644
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=3.1e-16 Score=121.29 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=90.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||.|.++..++++. +.+++|+++|+..++.++++....+.
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~~------------g~~v~git~s~~Q~~~a~~~~~~~g~--------------------- 110 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEKY------------DVNVVGLTLSKNQANHVQQLVANSEN--------------------- 110 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTCCC---------------------
T ss_pred CEEEEecCcchHHHHHHHhcC------------CcceEEEeccHHHHHHHHHHHHhhhh---------------------
Confidence 589999999999999999987 78999999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|...++ ++||.|++..++.++ .....+|++++++|||||.+++.+++
T Consensus 111 -------------------~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 111 -------------------LRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp -------------------CSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -------------------hhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 257788888876654 579999998888888 45689999999999999999998876
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 169 ~~ 170 (285)
T d1kpga_ 169 GL 170 (285)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.65 E-value=2e-16 Score=120.17 Aligned_cols=107 Identities=20% Similarity=0.155 Sum_probs=88.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++++. +..+++++|+ +.+++.++++....+.
T Consensus 82 ~~VLDvGcG~G~~~~~la~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~~~--------------------- 128 (253)
T d1tw3a2 82 RHVLDVGGGKGGFAAAIARRA-----------PHVSATVLEM-AGTVDTARSYLKDEGL--------------------- 128 (253)
T ss_dssp SEEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-TTHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHhc-----------ceeEEEEccC-HHHHHHHHHHHHHhhc---------------------
Confidence 379999999999999999988 4789999998 6789999998877654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+.+. ...+||+|++..++|++++. .++|++++++|||||++++.+..
T Consensus 129 -------------------~~rv~~~~~D~~~~--~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 129 -------------------SDRVDVVEGDFFEP--LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp -------------------TTTEEEEECCTTSC--CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------------------ccchhhccccchhh--cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 25788888887542 23569999999999988764 57899999999999999998875
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 188 ~~~ 190 (253)
T d1tw3a2 188 DLH 190 (253)
T ss_dssp BCG
T ss_pred CCC
Confidence 443
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-17 Score=124.31 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=86.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++++...-++ ...+++|+|+|+.|++.++++....... +
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~-----~~~~~~~vD~s~~~l~~a~~~~~~~~~~--~----------------- 97 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPG-----VCINNEVVEPSAEQIAKYKELVAKISNL--E----------------- 97 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTT-----CEEEEEEECCCHHHHHHHHHHHTTCCSC--T-----------------
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccC-----CceEEEEEeCcHHHHHHHHHHHhhcccc--c-----------------
Confidence 379999999999999998865310000 2346899999999999999987643220 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccC------CCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAE------ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
+.++.+...+.+ ..+..+++||+|++..++++++++..++++++++|+|||.+++
T Consensus 98 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 98 -------------------NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp -------------------TEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred -------------------cccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 012333333332 2345678899999999999999999999999999999999999
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
+..+.
T Consensus 159 ~~~~~ 163 (280)
T d1jqea_ 159 IVVSG 163 (280)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 87654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=5.7e-16 Score=115.05 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=83.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++.+. +..+++++|+++.+++.++++++..+.
T Consensus 77 ~~VLdiG~GtG~~s~~la~~~~----------~~g~V~~id~~~~~~~~a~~~~~~~~~--------------------- 125 (213)
T d1dl5a1 77 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVERLGI--------------------- 125 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred ceEEEecCccchhHHHHHHHhC----------CCCcEEEeecchhhHHHhhhhHhhhcc---------------------
Confidence 5899999999999999999885 477899999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..+.....++||.|++..+++++++ ++++.|||||+|++.
T Consensus 126 --------------------~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 126 --------------------ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp --------------------CSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred --------------------cccccccCchHHccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 5677777887776666778999999888777653 567889999999883
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.61 E-value=4.9e-16 Score=112.90 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=83.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ ...+++++|+++.+++.|+++++..+.
T Consensus 35 ~~VLDiGcGsG~~s~~lA~-------------~~~~V~avD~~~~~l~~a~~n~~~~gl--------------------- 80 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLELAG-------------RVRRVYAIDRNPEAISTTEMNLQRHGL--------------------- 80 (186)
T ss_dssp CEEEEESCTTSHHHHHHHT-------------TSSEEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEEECCeEcccccccc-------------cceEEEEecCCHHHHHHHHHHHHHcCC---------------------
Confidence 4899999999999999886 356899999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+..+|..+.......||.|++... ......+++.+.++|||||++++...
T Consensus 81 -------------------~~~v~~~~gda~~~~~~~~~~D~v~~~~~---~~~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 81 -------------------GDNVTLMEGDAPEALCKIPDIDIAVVGGS---GGELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp -------------------CTTEEEEESCHHHHHTTSCCEEEEEESCC---TTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -------------------CcceEEEECchhhcccccCCcCEEEEeCc---cccchHHHHHHHHHhCcCCEEEEEee
Confidence 24677888887766666678999988654 34467789999999999999988654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=7.5e-16 Score=114.15 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+.++++..+ ..+++|+|+|+.|++.++++.+..
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~-----------~g~V~gvDis~~~i~~a~~~a~~~----------------------- 103 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVD-----------EGIIYAVEYSAKPFEKLLELVRER----------------------- 103 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTT-----------TSEEEEECCCHHHHHHHHHHHHHC-----------------------
T ss_pred CEEEEeCCcCCHHHHHHHHhcc-----------CCeEEEEeCCHHHHHHHHHHhhcc-----------------------
Confidence 5899999999999999999874 568999999999999999988654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh-hhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.++..+..........+|.+.+ ...+.+..+...++++++++|||||++++....
T Consensus 104 --------------------~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 104 --------------------NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp --------------------SSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred --------------------CCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 3466666666655433333443322 233445567788999999999999999997654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1.1e-15 Score=116.87 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=86.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.+. +.++++++|+++++++.|+++++......
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vg----------p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~------------------- 148 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVG----------PAGQVISYEQRADHAEHARRNVSGCYGQP------------------- 148 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHHTSC-------------------
T ss_pred CEEEecCcCCcHHHHHHHHhhC----------CCcEEEEecCCHHHHHHHHHhhhhhccCC-------------------
Confidence 6899999999999999999986 57899999999999999999987653200
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+.++.+++||.|++ .++++..++.+++++|||||++++..
T Consensus 149 -------------------~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 149 -------------------PDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp -------------------CTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEe
Confidence 14677888888777777888998865 47888999999999999999998754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=1.9e-15 Score=111.61 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=82.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|..+..+++.. +...++|+|++..++..+.++....+.
T Consensus 32 lvLeIGcG~G~~~~~lA~~~-----------p~~~~iGiD~~~~~i~~a~~~~~~~~l---------------------- 78 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQN-----------PDINYIGIELFKSVIVTAVQKVKDSEA---------------------- 78 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHC-----------TTSEEEEECSCHHHHHHHHHHHHHSCC----------------------
T ss_pred eEEEEEecCcHHHHHHHHhC-----------CCCcEEEeecchHHHHHHHHHHHHHhc----------------------
Confidence 58999999999999999987 488999999999999999999987775
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccH--------HHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~--------~~~l~~~~~~LkpgG~ 151 (167)
.++.++.+|...+. +.++++|.|.+.+...|.+.. ...+++++++|||||.
T Consensus 79 -------------------~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~ 139 (204)
T d2fcaa1 79 -------------------QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGS 139 (204)
T ss_dssp -------------------SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred -------------------cCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcE
Confidence 56777777665543 556777777766555444322 4688999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
|++.+
T Consensus 140 l~i~T 144 (204)
T d2fcaa1 140 IHFKT 144 (204)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98854
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=1.9e-15 Score=110.30 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=83.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++++.....
T Consensus 54 ~~VLDiGcG~G~~~~~la~~-------------~~~v~~iD~s~~~i~~a~~n~~~~~l~-------------------- 100 (194)
T d1dusa_ 54 DDILDLGCGYGVIGIALADE-------------VKSTTMADINRRAIKLAKENIKLNNLD-------------------- 100 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTCT--------------------
T ss_pred CeEEEEeecCChhHHHHHhh-------------ccccceeeeccccchhHHHHHHHhCCc--------------------
Confidence 48999999999999998874 467999999999999999998765430
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc-HHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+.++.+...|..+ +..+.+||+|+++..++...+ ...+++++.++|+|||.+++..
T Consensus 101 -------------------~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 101 -------------------NYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp -------------------TSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------cceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 1357777777765 455688999999877776554 5788999999999999998744
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-15 Score=112.93 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=89.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|||+|..+..+++ .+.+++|+|+|+.+++.++++...... ..+...++
T Consensus 47 ~rvLd~GCG~G~~a~~LA~-------------~G~~V~gvD~S~~ai~~a~~~~~~~~~-----------~~~~~~~~-- 100 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFAD-------------RGHSVVGVEISELGIQEFFTEQNLSYS-----------EEPITEIP-- 100 (229)
T ss_dssp CEEEETTCTTCTHHHHHHH-------------TTCEEEEECSCHHHHHHHHHHTTCCEE-----------EEECTTST--
T ss_pred CEEEEeCCCCcHHHHHHHh-------------CCCcEEEEeCCHHHHHHHHHHhhcccc-----------ccchhccc--
Confidence 4899999999999999998 478999999999999999988653321 00000000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..........++.+.+.|...+ +...+.||+|+...+++++ .+.+.++++++++|||||++++..+
T Consensus 101 -----------~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 101 -----------GTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp -----------TCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -----------ccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 0000001125678888887665 3556789999998888876 4567899999999999999988877
Q ss_pred cccC
Q psy889 158 SHVN 161 (167)
Q Consensus 158 ~~~~ 161 (167)
....
T Consensus 170 ~~~~ 173 (229)
T d2bzga1 170 SYDP 173 (229)
T ss_dssp ECCT
T ss_pred ccCC
Confidence 6543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.58 E-value=2.2e-15 Score=114.72 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=86.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++++. +..+++++|+ +++++.+++++...+.
T Consensus 84 ~vlDvG~G~G~~~~~l~~~~-----------P~~~~~~~Dl-p~~~~~a~~~~~~~~~---------------------- 129 (256)
T d1qzza2 84 HVLDVGGGNGGMLAAIALRA-----------PHLRGTLVEL-AGPAERARRRFADAGL---------------------- 129 (256)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------TTCEEEEEEC-HHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEECCCCCHHHHHHHHhh-----------cCcEEEEecC-hHHHHHHHHHHhhcCC----------------------
Confidence 79999999999999999988 4789999997 7789999998876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|... +. +..||+|++.+++|++++. .++|++++++|||||++++++...
T Consensus 130 ------------------~~ri~~~~~d~~~-~~-p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 130 ------------------ADRVTVAEGDFFK-PL-PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp ------------------TTTEEEEECCTTS-CC-SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred ------------------cceeeeeeeeccc-cc-cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 2567787777654 22 2459999999999988764 577999999999999999988653
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 190 ~ 190 (256)
T d1qzza2 190 V 190 (256)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=8.3e-16 Score=117.03 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=78.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++.+..+.
T Consensus 122 ~~VLDiGcGsG~l~i~aa~-------------~g~~V~gvDis~~av~~A~~na~~n~~--------------------- 167 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEK-------------LGGKALGVDIDPMVLPQAEANAKRNGV--------------------- 167 (254)
T ss_dssp CEEEEETCTTSHHHHHHHH-------------TTCEEEEEESCGGGHHHHHHHHHHTTC---------------------
T ss_pred CEEEEcccchhHHHHHHHh-------------cCCEEEEEECChHHHHHHHHHHHHcCC---------------------
Confidence 4899999999999988765 367899999999999999999876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
+..+...+... ....++||+|+++.. ...+..+++++.++|||||+++++++...
T Consensus 168 ---------------------~~~~~~~d~~~-~~~~~~fD~V~ani~---~~~l~~l~~~~~~~LkpGG~lilSgil~~ 222 (254)
T d2nxca1 168 ---------------------RPRFLEGSLEA-ALPFGPFDLLVANLY---AELHAALAPRYREALVPGGRALLTGILKD 222 (254)
T ss_dssp ---------------------CCEEEESCHHH-HGGGCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEEEEEEEEEGG
T ss_pred ---------------------ceeEEeccccc-cccccccchhhhccc---cccHHHHHHHHHHhcCCCcEEEEEecchh
Confidence 34555665543 234568999988643 23456788899999999999999876543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=2.8e-15 Score=112.55 Aligned_cols=107 Identities=10% Similarity=-0.009 Sum_probs=83.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+.++++.. +.+.++|+|+|+.|++.++++....
T Consensus 76 ~~VLDlGcGsG~~~~~la~~~-----------~~g~V~aVDiS~~~i~~a~~~a~~~----------------------- 121 (230)
T d1g8sa_ 76 SKILYLGASAGTTPSHVADIA-----------DKGIVYAIEYAPRIMRELLDACAER----------------------- 121 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHT-----------TTSEEEEEESCHHHHHHHHHHTTTC-----------------------
T ss_pred CEEEEeCEEcCHHHHHHHHhC-----------CCCEEEEEeCcHHHHHHHHHHHhhh-----------------------
Confidence 589999999999999999976 3679999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++..+..+.... .+.+..+|++++...+++..+...++.++++.|||||++++.....
T Consensus 122 --------------------~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 122 --------------------ENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp --------------------TTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred --------------------cccceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeecc
Confidence 2345555554442 2344556776666677778888999999999999999999876554
Q ss_pred cC
Q psy889 160 VN 161 (167)
Q Consensus 160 ~~ 161 (167)
..
T Consensus 182 ~~ 183 (230)
T d1g8sa_ 182 SI 183 (230)
T ss_dssp GT
T ss_pred cc
Confidence 43
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.2e-16 Score=116.72 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=76.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++++. ..+++++|+|+.+++.|+++......
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~------------~~~v~~id~s~~~~~~a~~~~~~~~~--------------------- 101 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQTH--------------------- 101 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSC------------EEEEEEEECCHHHHHHHHHHGGGCSS---------------------
T ss_pred CeEEEeeccchHHHHHHHHcC------------CCeEEEeCCCHHHHHHHHHHhhhccc---------------------
Confidence 389999999999999998753 46799999999999999998765432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC--CCCCccchhhH-----hhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE--LPIESDSYSAY-----TIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v-----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
++.+...+... ....+++||.| .+...++++.+...++++++|+|||||+|+
T Consensus 102 ---------------------~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 102 ---------------------KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160 (229)
T ss_dssp ---------------------EEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred ---------------------ccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence 33443333221 22344555555 456677788889999999999999999998
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+.+
T Consensus 161 ~~~ 163 (229)
T d1zx0a1 161 YCN 163 (229)
T ss_dssp ECC
T ss_pred EEe
Confidence 743
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=5.3e-15 Score=112.25 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.+. +.++++++|.++.+++.|+++++....
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~----------~~g~V~~vD~~e~~~~~A~~n~~~~~~--------------------- 135 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALN----------GKGTLTVVERDEDNLKKAMDNLSEFYD--------------------- 135 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHT----------TSSEEEEECSCHHHHHHHHHHHHTTSC---------------------
T ss_pred CEEEEeeeeCcHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhcC---------------------
Confidence 5899999999999999999875 478999999999999999999976543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+. ..+..||.|++ .+++...++++++++|||||+|++..
T Consensus 136 -------------------~~nv~~~~~Di~~~-~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 136 -------------------IGNVRTSRSDIADF-ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp -------------------CTTEEEECSCTTTC-CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred -------------------CCceEEEEeeeecc-cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEe
Confidence 15677777777654 34577998875 36777889999999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1.5e-15 Score=117.26 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=74.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++....... ...
T Consensus 59 ~vLD~GcG~G~~~~~la~-------------~g~~v~gvD~S~~ml~~A~~~~~~~~~~------~~~------------ 107 (292)
T d1xvaa_ 59 RVLDVACGTGVDSIMLVE-------------EGFSVTSVDASDKMLKYALKERWNRRKE------PAF------------ 107 (292)
T ss_dssp EEEESSCTTSHHHHHHHH-------------TTCEEEEEESCHHHHHHHHHHHHHTTTS------HHH------------
T ss_pred EEEEecCCCcHHHHHHHH-------------cCCeeeeccCchHHHHHHHHHHHhcccc------ccc------------
Confidence 799999999999999987 3678999999999999999987654320 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC---CCCccchhhHhhh-hcccccc-------cHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIESDSYSAYTIA-FGIRNVT-------RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~-~~~~~~~-------~~~~~l~~~~~~LkpgG 150 (167)
.+..+...+.... ......||.|+|. .++.+++ +...+|++++++|||||
T Consensus 108 -------------------~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 168 (292)
T d1xvaa_ 108 -------------------DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 168 (292)
T ss_dssp -------------------HTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEE
T ss_pred -------------------ceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCc
Confidence 0122222222111 1123569999874 3566653 46789999999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
+|++..
T Consensus 169 ~li~~~ 174 (292)
T d1xvaa_ 169 LLVIDH 174 (292)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 999844
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-15 Score=114.91 Aligned_cols=138 Identities=12% Similarity=-0.038 Sum_probs=81.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++... ..+++|+|+|+.+++.|++++......... ........+.+.
T Consensus 54 ~vLDlGcG~G~~~~~~~~~~------------~~~v~giD~S~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~~~~----- 115 (257)
T d2a14a1 54 TLIDIGSGPTIYQVLAACDS------------FQDITLSDFTDRNREELEKWLKKEPGAYDW-TPAVKFACELEG----- 115 (257)
T ss_dssp EEEESSCTTCCGGGTTGGGT------------EEEEEEEESCHHHHHHHHHHHHTCTTCCCC-HHHHHHHHHHTT-----
T ss_pred EEEEECCCCCHhHHHHhccc------------cCcEEEecCCHHHHHHHHHHHhhccccchh-hhHHHHHHHhcc-----
Confidence 79999999999887665532 447999999999999999998654320000 000000000000
Q ss_pred CCCceeeeeeccccccCCCCceEE--eecccCCCCCCccchhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRF--LEANAEELPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
............+.. . ..... ...+....+...++||+|++..+++++. +...++++++++|||||++++.
T Consensus 116 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 116 NSGRWEEKEEKLRAA--V-KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp CGGGHHHHHHHHHHH--E-EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccchHHHHHHHHhhh--h-hcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 000000000000000 0 00000 1112222356678899999999998874 5778999999999999999998
Q ss_pred eeccc
Q psy889 156 EFSHV 160 (167)
Q Consensus 156 ~~~~~ 160 (167)
++...
T Consensus 193 ~~~~~ 197 (257)
T d2a14a1 193 VTLRL 197 (257)
T ss_dssp EESSC
T ss_pred Eeccc
Confidence 87543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.53 E-value=2.9e-14 Score=105.06 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|..+..++... +...++|+|+++.++..+.++....+.
T Consensus 34 lvLdIGcG~G~~~~~lA~~~-----------p~~~~iGid~~~~~v~~a~~~~~~~~l---------------------- 80 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQN-----------PDINYIGIDIQKSVLSYALDKVLEVGV---------------------- 80 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHC-----------TTSEEEEEESCHHHHHHHHHHHHHHCC----------------------
T ss_pred eEEEEeccCCHHHHHHHHHC-----------CCCceEEEeccHHHHHHHHHhhhhhcc----------------------
Confidence 48999999999999999987 478899999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...|...+. +++.++|.|.+.+.-.|.+. ....|+.+.++|||||.
T Consensus 81 -------------------~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~ 141 (204)
T d1yzha1 81 -------------------PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE 141 (204)
T ss_dssp -------------------SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred -------------------ccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcE
Confidence 56777777766543 55677787776554433332 15778999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
|++.+
T Consensus 142 l~i~T 146 (204)
T d1yzha1 142 IHFKT 146 (204)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.8e-14 Score=113.18 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=83.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++...+ ..+++|+|+++.+++.|++..+.....
T Consensus 153 ~~vlD~GcG~G~~~~~~a~~~~-----------~~~~~Gid~s~~~~~~a~~~~~~~~~~-------------------- 201 (328)
T d1nw3a_ 153 DLFVDLGSGVGQVVLQVAAATN-----------CKHHYGVEKADIPAKYAETMDREFRKW-------------------- 201 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHHCC-----------CSEEEEEECSHHHHHHHHHHHHHHHHH--------------------
T ss_pred CEEEEcCCCCCHHHHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHHHHHHHHH--------------------
Confidence 4799999999999999988763 567999999999999998876543210
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchh--hHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYS--AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D--~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+.......++.+..+|+.+.++.+..+| +|++ +.+.+.+++...+.++++.|||||++++.+
T Consensus 202 ------------~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 202 ------------MKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp ------------HHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ------------hhhccccCCceEEEECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 00000011568899999888776655554 4544 445567888999999999999999998865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=3.5e-14 Score=108.58 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=78.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.+. +.++++++|+++.+++.|+++++..+.
T Consensus 105 ~~VLDiG~GsG~lt~~lA~~~~----------~~G~V~~vD~~~~~~~~A~~~~~~~g~--------------------- 153 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCAVLARAVG----------SSGKVFAYEKREEFAKLAESNLTKWGL--------------------- 153 (266)
T ss_dssp CEEEEECCTTSHHHHHHHHHTT----------TTCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhC----------CCcEEEEEeCCHHHHHHHHHHHHHhcc---------------------
Confidence 5899999999999999999875 478999999999999999999987664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|... .+....+|.|+ ..++++..++++++++|||||++++..
T Consensus 154 -------------------~~~v~~~~~d~~~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 154 -------------------IERVTIKVRDISE-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp -------------------GGGEEEECCCGGG-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred -------------------ccCcEEEeccccc-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence 1344444444322 23344566654 457889999999999999999998754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.2e-14 Score=106.29 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=81.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... +..+++++|+++++++.|++++........
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~----------~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~------------------ 129 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVG----------CTGKVIGIDHIKELVDDSVNNVRKDDPTLL------------------ 129 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHHCTHHH------------------
T ss_pred CeEEEecCCCCHHHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHhccccCcccc------------------
Confidence 5899999999999999998775 477999999999999999999865432000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...++.+...|........+.||.|++..++.+++ ..+.+.|||||+|++..
T Consensus 130 ------------------~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 130 ------------------SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp ------------------HTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred ------------------cccceEEEEeecccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence 00356777777766666678899999988777665 35789999999999843
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.3e-14 Score=110.52 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=79.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccc--ccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL--EANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~l~ 78 (167)
.+|||+|||+|..+...+... ..+++++|+|+.|++.+++++..... ..++..+. ..+.+...
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~------------~~~v~~~D~S~~~i~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~ 120 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSH------------FEDITMTDFLEVNRQELGRWLQEEPG---AFNWSMYSQHACLIEGKG 120 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGG------------CSEEEEECSCHHHHHHHHHHHTTCTT---CCCCHHHHHHHHHHHCSC
T ss_pred cEEEEeccCCCHHHHHHhccc------------CCeEEEEeCCHHHHHHHHHHHhcCcc---cccchhhhhhhhhhcccc
Confidence 489999999998875544432 56899999999999999988754321 00000000 00000000
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeeccc------CCCCCCccchhhHhhhhcccccc----cHHHHHHHHHHhcCC
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANA------EELPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKP 148 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~Lkp 148 (167)
...+ ......+. ........|. ...+...+.||+|++.++++++. +.++++++++++|||
T Consensus 121 ---~~~~--~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP 190 (263)
T d2g72a1 121 ---ECWQ--DKERQLRA-----RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP 190 (263)
T ss_dssp ---CCHH--HHHHHHHH-----HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE
T ss_pred ---chhh--hhHHHhhh-----hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC
Confidence 0000 00000000 0011122222 12234557899999999998774 578999999999999
Q ss_pred CcEEEEEeecc
Q psy889 149 GGRFLCLEFSH 159 (167)
Q Consensus 149 gG~l~~~~~~~ 159 (167)
||+|++.+...
T Consensus 191 GG~li~~~~~~ 201 (263)
T d2g72a1 191 GGHLLLIGALE 201 (263)
T ss_dssp EEEEEEEEEES
T ss_pred CCEEEEecccC
Confidence 99999977643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=9.7e-14 Score=103.80 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=78.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+.++++.+. +.++++++|+++.+++.++++.+...
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG----------~~G~V~aVD~s~~~l~~a~~~a~~~~---------------------- 122 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG----------WEGKIFGIEFSPRVLRELVPIVEERR---------------------- 122 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHSSCT----------------------
T ss_pred CEEEEeccCCCHHHHHHHHHhC----------CCCEEEEEeCcHHHHHHHHHHHHhcC----------------------
Confidence 5899999999999999999986 47899999999999999998876433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
++..+..+... .+.....+|.|++ .+.+..+...+++++++.|||||+++++..
T Consensus 123 ---------------------~~~~i~~d~~~~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 123 ---------------------NIVPILGDATKPEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp ---------------------TEEEEECCTTCGGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------CceEEEEECCCcccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 23344444322 2333455776654 334556778899999999999999998765
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
..
T Consensus 180 a~ 181 (227)
T d1g8aa_ 180 SR 181 (227)
T ss_dssp GG
T ss_pred CC
Confidence 43
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.4e-13 Score=107.85 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.+. +.++++++|+++++++.|+++++..+.. +..
T Consensus 100 ~rVLE~GtGsG~lt~~LAr~vg----------~~G~V~t~E~~~~~~~~A~~n~~~~~~~--------~~~--------- 152 (324)
T d2b25a1 100 DTVLEAGSGSGGMSLFLSKAVG----------SQGRVISFEVRKDHHDLAKKNYKHWRDS--------WKL--------- 152 (324)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESSHHHHHHHHHHHHHHHHH--------HTT---------
T ss_pred CEEEEecccccHHHHHHHHHhC----------CCcEEEEecCCHHHHHHHHHHHHHhhhh--------hhh---------
Confidence 5899999999999999999986 5789999999999999999999765320 000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+......++.+...|..... .....||.|++ .+++...++.+++++|||||+|++..
T Consensus 153 -------------~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 153 -------------SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp -------------TCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred -------------hhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 000011246777777765542 44567888764 35677789999999999999998743
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=3.7e-13 Score=105.41 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.+++.++++. ..+++++|.|+ ++..++++....+.
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~G------------a~~V~avd~s~-~~~~a~~~~~~~~~--------------------- 85 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHG------------AKHVIGVDMSS-IIEMAKELVELNGF--------------------- 85 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTC------------CSEEEEEESST-HHHHHHHHHHHTTC---------------------
T ss_pred CEEEEeCCCCCHHHHHHHHhC------------CCEEEEEeCCH-HHHHHHHHHHHhCc---------------------
Confidence 479999999999999888753 35899999986 67788877765554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc---ccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR---NVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.++..+..+++.++.+||+|++....+ +......++....++|||||.++
T Consensus 86 -------------------~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 86 -------------------SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp -------------------TTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -------------------cccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 2578888888888888888999998855443 44567888999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=5.7e-13 Score=102.07 Aligned_cols=130 Identities=13% Similarity=0.106 Sum_probs=87.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|-++..++... +..+++++|+|+.+++.|+++++..+. .++++..+|... +++
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~-----------p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v~~~~~d~~~-~~~ 172 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASER-----------PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFS-ALA 172 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHC-----------TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTG-GGT
T ss_pred cceeeeehhhhHHHHHHHhhC-----------CcceeeeccchhHHHhHHHHHHHHhCc-----ccceeeeccccc-ccC
Confidence 479999999999999999877 478999999999999999999987764 257888888655 345
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.+.||.+++.+|.-.... ... ......+. ....+.. .-......+++++++.++|+|||.+++ +++.
T Consensus 173 ~~~fDlIvsNPPYi~~~~----~~~---~~~v~~~e---P~~AL~~-g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~ 239 (274)
T d2b3ta1 173 GQQFAMIVSNPPYIDEQD----PHL---QQGDVRFE---PLTALVA-ADSGMADIVHIIEQSRNALVSGGFLLL-EHGW 239 (274)
T ss_dssp TCCEEEEEECCCCBCTTC----HHH---HSSGGGSS---CSTTTBC-HHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS
T ss_pred CCceeEEEecchhhhhhh----hcc---cccccccc---hhhhccc-ccccchHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 567887777766532110 000 00000000 0000000 012234567889999999999999998 6654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.35 E-value=5.7e-13 Score=99.34 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=73.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..|..++.. ..+++++|+++.+++.|+++....
T Consensus 72 ~~VLdIG~GsGy~ta~La~l-------------~~~V~aiE~~~~~~~~A~~~~~~~----------------------- 115 (224)
T d1vbfa_ 72 QKVLEIGTGIGYYTALIAEI-------------VDKVVSVEINEKMYNYASKLLSYY----------------------- 115 (224)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTC-----------------------
T ss_pred ceEEEecCCCCHHHHHHHHH-------------hcccccccccHHHHHHHHHHHhcc-----------------------
Confidence 58999999999999887763 568999999999999999876532
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|........++||.|++..+..+++ ..+.+.|+|||+|++.
T Consensus 116 --------------------~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 116 --------------------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp --------------------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred --------------------cccccccCchhhcchhhhhHHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 457777777655444567799999877766554 3467889999999883
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-12 Score=101.57 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.+++.++++. ..+++++|.|+.+...++ .....+.
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~G------------a~~V~aid~s~~~~~a~~-~~~~~~~--------------------- 82 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAG------------AKKVLGVDQSEILYQAMD-IIRLNKL--------------------- 82 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEEESSTHHHHHHH-HHHHTTC---------------------
T ss_pred CEEEEECCCCCHHHHHHHHcC------------CCEEEEEeCHHHHHHHHH-HHHHhCC---------------------
Confidence 379999999999999988854 358999999998865444 4433332
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...+.++++....+||+|++....+.. ..+..++....++|||||+++-
T Consensus 83 -------------------~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 83 -------------------EDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp -------------------TTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred -------------------CccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 157888888888888888899999986554433 3466777788899999999873
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.2e-12 Score=101.90 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=78.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. ..+++++|.|+.+ ..+++.....+.
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~G------------a~~V~avd~s~~~-~~a~~~~~~n~~--------------------- 80 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAG------------ARKVIGIECSSIS-DYAVKIVKANKL--------------------- 80 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTT------------CSEEEEEECSTTH-HHHHHHHHHTTC---------------------
T ss_pred CEEEEEecCCcHHHHHHHHhC------------CCEEEEEcCcHHH-hhhhhHHHHhCC---------------------
Confidence 369999999999999888853 3579999999765 555555554443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...+..+++....++|+|++....+.. ..++.++..+.++|||||.++
T Consensus 81 -------------------~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 81 -------------------DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -------------------TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -------------------ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 156888888888888888889999886554433 457899999999999999987
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=9.9e-13 Score=97.45 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=81.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++... +.+++++|.++.+++.+++++...+.
T Consensus 80 ~~VLeIGsGsGY~taila~l~------------g~~V~~ie~~~~l~~~a~~~l~~~g~--------------------- 126 (215)
T d1jg1a_ 80 MNILEVGTGSGWNAALISEIV------------KTDVYTIERIPELVEFAKRNLERAGV--------------------- 126 (215)
T ss_dssp CCEEEECCTTSHHHHHHHHHH------------CSCEEEEESCHHHHHHHHHHHHHTTC---------------------
T ss_pred ceEEEecCCCChhHHHHHHhh------------CceeEEEeccHHHHHHHHHHHHHcCC---------------------
Confidence 589999999999999888766 57799999999999999999988776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+..+|...-....+.||.|++...+..++. .+.+.|+|||+|++.
T Consensus 127 --------------------~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 127 --------------------KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp --------------------CSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred --------------------ceeEEEECccccCCcccCcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence 6788888888776566788999999887776653 256789999999873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=3.3e-12 Score=102.58 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=73.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..++...+ ..+++|+|+++.+++.|+++.+.... +..+.
T Consensus 218 d~fLDLGCG~G~~vl~aA~~~g-----------~~~v~GIDiS~~~i~~Ak~~~~e~~~------~~~~~---------- 270 (406)
T d1u2za_ 218 DTFMDLGSGVGNCVVQAALECG-----------CALSFGCEIMDDASDLTILQYEELKK------RCKLY---------- 270 (406)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC-----------CSEEEEEECCHHHHHHHHHHHHHHHH------HHHHT----------
T ss_pred CEEEeCCCCCcHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHHhh------hhhhh----------
Confidence 4799999999999999999873 46899999999999999998865432 00000
Q ss_pred CCCCceeeeeeccccccCCCCceEE-eecccCCCCC---CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRF-LEANAEELPI---ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
........+ ...+....+. .-...|+|++++ +.+.+++...|++++++|||||+++..+
T Consensus 271 ----------------g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 271 ----------------GMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp ----------------TBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ----------------ccccccceeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 000012222 1222221110 112234444432 3456788999999999999999998865
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=4.9e-13 Score=97.49 Aligned_cols=118 Identities=17% Similarity=0.327 Sum_probs=87.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.|||++||+|+++.++++.++ ..+++|+|.++.+++.+++++..... ++.+..+++.+++
T Consensus 26 ~~lD~t~G~Gghs~~il~~~~-----------~~~vi~~D~d~~~l~~a~~~l~~~~~------r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 26 IILDCTVGEGGHSRAILEHCP-----------GCRIIGIDVDSEVLRIAEEKLKEFSD------RVSLFKVSYREADFLL 88 (192)
T ss_dssp EEEETTCTTSHHHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHTGGGTT------TEEEEECCGGGHHHHH
T ss_pred EEEEecCCCcHHHHHHHhcCC-----------CCeEEEeechHHHHHHHHHhhccccc------cccchhHHHhhHHHHH
Confidence 689999999999999999883 78999999999999999999876543 6777777776653
Q ss_pred --CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 --IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..+.||.++..+|.+....+ ..-..+...+..+..++++|+|||.++++.
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld---------------------------~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLK---------------------------GENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHH---------------------------TSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHcCCCCcceeeeccchhHhhhh---------------------------hhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 445566655555555432110 001234556788999999999999999998
Q ss_pred ecccCCc
Q psy889 157 FSHVNNS 163 (167)
Q Consensus 157 ~~~~~~~ 163 (167)
|...+.+
T Consensus 142 f~s~Edr 148 (192)
T d1m6ya2 142 FHSLEDR 148 (192)
T ss_dssp SSHHHHH
T ss_pred cccHHHH
Confidence 8765544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.25 E-value=4.3e-12 Score=92.37 Aligned_cols=131 Identities=12% Similarity=0.065 Sum_probs=80.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.||+++|||+|..++.++..+.+..... ....+++|+|+++.+++.|++...... ..+.++
T Consensus 26 lrIwsaGCstGeE~YSlA~~l~e~~~~~---~~~~~I~atDi~~~~l~~A~~g~y~~~--------------~~~~~~~~ 88 (193)
T d1af7a2 26 YRVWSAAASTGEEPYSIAITLADALGMA---PGRWKVFASDIDTEVLEKARSGIYRLS--------------ELKTLSPQ 88 (193)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSC---TTSEEEEEEESCHHHHHHHHHTEEEGG--------------GGTTSCHH
T ss_pred eEEEEeCCCCchhHHHHHHHHHHhhhhc---CCceEEEeecCChHHhhHhhcCcccHH--------------HHhhhhHH
Confidence 3899999999998777665442111000 024579999999999999986542211 111121
Q ss_pred --------CCCCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccccc--HHHHHHHHHHhcC
Q psy889 79 --------IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLK 147 (167)
Q Consensus 79 --------~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~Lk 147 (167)
........+.....++ ..+.+...+... .+...+.||+|+|.+++..++. .+++++++++.|+
T Consensus 89 ~~~~yf~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~ 162 (193)
T d1af7a2 89 QLQRYFMRGTGPHEGLVRVRQELA------NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK 162 (193)
T ss_dssp HHHHHEEECCTTSCSEEEECHHHH------TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE
T ss_pred HHhhceeecCCCccceeehHHHHH------HHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC
Confidence 0111111112222221 234454444332 2344578999999999987765 4789999999999
Q ss_pred CCcEEEE
Q psy889 148 PGGRFLC 154 (167)
Q Consensus 148 pgG~l~~ 154 (167)
|||+|++
T Consensus 163 pGG~L~l 169 (193)
T d1af7a2 163 PDGLLFA 169 (193)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999887
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.4e-12 Score=101.90 Aligned_cols=104 Identities=24% Similarity=0.219 Sum_probs=72.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++.+++.. +.+++++|+|+.+++.++++++..+.
T Consensus 148 rVLDl~~gtG~~s~~~a~g-------------~~~V~~vD~s~~al~~a~~n~~~ngl---------------------- 192 (318)
T d1wxxa2 148 RALDVFSYAGGFALHLALG-------------FREVVAVDSSAEALRRAEENARLNGL---------------------- 192 (318)
T ss_dssp EEEEETCTTTHHHHHHHHH-------------EEEEEEEESCHHHHHHHHHHHHHTTC----------------------
T ss_pred eeeccCCCCcHHHHHHHhc-------------CCcEEeecchHHHHHHHHHHHHHcCC----------------------
Confidence 7999999999999988752 56899999999999999999987665
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhc---------ccccccHHHHHHHHHHhcCC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFG---------IRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~---------~~~~~~~~~~l~~~~~~Lkp 148 (167)
.++.++..|..++ ......||+|++.-- .........++..+.++|+|
T Consensus 193 -------------------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp 253 (318)
T d1wxxa2 193 -------------------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE 253 (318)
T ss_dssp -------------------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------------------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2334444433221 112234555544210 01123456788899999999
Q ss_pred CcEEEEEeecc
Q psy889 149 GGRFLCLEFSH 159 (167)
Q Consensus 149 gG~l~~~~~~~ 159 (167)
||.|+++.+++
T Consensus 254 GG~Lv~~scs~ 264 (318)
T d1wxxa2 254 GGILATASCSH 264 (318)
T ss_dssp EEEEEEEECCT
T ss_pred CCEEEEEeCCc
Confidence 99999977654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.2e-11 Score=93.96 Aligned_cols=104 Identities=10% Similarity=0.095 Sum_probs=79.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+.
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~------------~~~V~avd~n~~a~~~~~~N~~~n~l--------------------- 155 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYG------------KAKVIAIEKDPYTFKFLVENIHLNKV--------------------- 155 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHT------------CCEEEEECCCHHHHHHHHHHHHHTTC---------------------
T ss_pred cEEEECcceEcHHHHHHHHhC------------CcEEEEecCCHHHHHHHHHHHHHhCC---------------------
Confidence 479999999999999998754 46899999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..++.. .+.||.|++.. .+.-...+..+.+.|++||.+.+.++.+.
T Consensus 156 -------------------~~~v~~~~~D~~~~~~-~~~~D~Ii~~~----p~~~~~~l~~a~~~l~~gG~lh~~~~~~~ 211 (260)
T d2frna1 156 -------------------EDRMSAYNMDNRDFPG-ENIADRILMGY----VVRTHEFIPKALSIAKDGAIIHYHNTVPE 211 (260)
T ss_dssp -------------------TTTEEEECSCTTTCCC-CSCEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred -------------------CceEEEEEcchHHhcc-CCCCCEEEECC----CCchHHHHHHHHhhcCCCCEEEEEecccc
Confidence 1456777777766543 35688776532 23345577788899999999988776644
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
+
T Consensus 212 ~ 212 (260)
T d2frna1 212 K 212 (260)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=5.3e-12 Score=93.91 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=78.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++.++..-.+ ...+++++|.++++++.+++++...... .
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~~-----~~~~V~~iE~~~~l~~~a~~~l~~~~~~----------~--------- 137 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGVD-----ADTRIVGIEHQAELVRRSKANLNTDDRS----------M--------- 137 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCC-----TTCEEEEEESCHHHHHHHHHHHHHHHHH----------H---------
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccCC-----cccEEEEEecCHHHHHHHHHhhhhcchh----------h---------
Confidence 489999999999999998876310000 2458999999999999999887543210 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
. ...++.+...|........+.||.|++...+..+++ .+.+.|||||++++.
T Consensus 138 ----------~-------~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 138 ----------L-------DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp ----------H-------HHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ----------c-------CccEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 0 004678888887766556778999999887766553 467899999999874
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.15 E-value=1e-11 Score=97.15 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=73.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+. .+++++..+|+....
T Consensus 147 ~~VLDl~~g~G~~si~~a~~g------------a~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~-- 208 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAG------------ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEM-- 208 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHH--
T ss_pred CeeecccCcccchhhhhhhcC------------CcEEEeecCCHHHHHHHHHHHHHcCC----Cccceeeechhhhhh--
Confidence 489999999999999988743 35899999999999999999987665 123334444432210
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcc---------cccccHHHHHHHHHHhcCCCcE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI---------RNVTRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~---------~~~~~~~~~l~~~~~~LkpgG~ 151 (167)
...+.....||+|++.--. ....+..+++..+.++|+|||+
T Consensus 209 ------------------------------~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~ 258 (324)
T d2as0a2 209 ------------------------------EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI 258 (324)
T ss_dssp ------------------------------HHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ------------------------------HHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 0011122345555441100 0122356678889999999999
Q ss_pred EEEEeecc
Q psy889 152 FLCLEFSH 159 (167)
Q Consensus 152 l~~~~~~~ 159 (167)
|+++..++
T Consensus 259 lv~~s~s~ 266 (324)
T d2as0a2 259 LVTCSCSQ 266 (324)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCc
Confidence 99977654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.04 E-value=2.3e-10 Score=85.92 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=76.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++++. +..+++..|+.+ .+ +....
T Consensus 84 ~vlDiGGG~G~~~~~l~~~~-----------P~l~~~v~Dlp~-vi-------~~~~~---------------------- 122 (244)
T d1fp1d2 84 TLVDVGGGSGRNLELIISKY-----------PLIKGINFDLPQ-VI-------ENAPP---------------------- 122 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------TTCEEEEEECHH-HH-------TTCCC----------------------
T ss_pred EEEEecCCCcHHHHHHHHHC-----------CCCeEEEecchh-hh-------hccCC----------------------
Confidence 69999999999999999988 488999999743 22 11111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...|+.+. .+ ..|+|++..++|.+++ ..++|+++++.|+|||.+++.|...
T Consensus 123 ------------------~~ri~~~~gd~~~~-~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 123 ------------------LSGIEHVGGDMFAS-VP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp ------------------CTTEEEEECCTTTC-CC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------------------CCCeEEecCCcccc-cc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 15677777776442 22 3499999999998876 4578999999999999999999876
Q ss_pred cCC
Q psy889 160 VNN 162 (167)
Q Consensus 160 ~~~ 162 (167)
++.
T Consensus 182 ~~~ 184 (244)
T d1fp1d2 182 PEE 184 (244)
T ss_dssp CSS
T ss_pred cCC
Confidence 554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.03 E-value=1.2e-10 Score=81.42 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ..+++++|.++.+++.++++++..+.
T Consensus 17 ~vlDl~~GtG~~~iea~~rg------------a~~v~~ve~~~~a~~~~~~n~~~~~~---------------------- 62 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRG------------MSAAVLVEKNRKAQAIIQDNIIMTKA---------------------- 62 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTT------------CCEEEEECCCHHHHHHHHHHHHTTTC----------------------
T ss_pred eEEEcCCccCHHHHHHHHhC------------cceeeeehhchhhhhhhhhhhhhccc----------------------
Confidence 79999999999999877643 35899999999999999999986654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHH--HhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~ 158 (167)
..++.+...|... +.....+||+|++.--. ........+..+. ++|+|||.+++ +..
T Consensus 63 ------------------~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy-~~~~~~~~l~~i~~~~~L~~~g~iii-E~~ 122 (152)
T d2esra1 63 ------------------ENRFTLLKMEAERAIDCLTGRFDLVFLDPPY-AKETIVATIEALAAKNLLSEQVMVVC-ETD 122 (152)
T ss_dssp ------------------GGGEEEECSCHHHHHHHBCSCEEEEEECCSS-HHHHHHHHHHHHHHTTCEEEEEEEEE-EEE
T ss_pred ------------------ccchhhhcccccccccccccccceeEechhh-ccchHHHHHHHHHHCCCcCCCeEEEE-EeC
Confidence 1346666666544 22334567877663110 1122344455443 57999999887 443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.02 E-value=1.1e-10 Score=90.92 Aligned_cols=116 Identities=8% Similarity=0.004 Sum_probs=71.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~- 78 (167)
.+|||++||+|.++.+++... ..+++++|+|+.+++.++++++..+. ...+++++.+|+... +
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~g------------a~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~~ 210 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGG------------AMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKY 210 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTT------------BSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHH
T ss_pred CceeecCCCCcHHHHHHHhCC------------CceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHHH
Confidence 489999999999998876632 34799999999999999999976554 223444555553221 1
Q ss_pred --CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 --IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
-..+.||.+++.+|. ..... ........+...++..+.++|+|||.|+++.
T Consensus 211 ~~~~~~~fD~Ii~DPP~-------------------f~~~~--------~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPS-------------------FARNK--------KEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp HHHTTCCEEEEEECCCC-------------------C-------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhhcCCCCEEEEcChh-------------------hccch--------hHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 122233333322221 00000 0001112345678889999999999999966
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
.+
T Consensus 264 cs 265 (317)
T d2b78a2 264 NA 265 (317)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1.6e-10 Score=85.20 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++++. .+++++++|.++.+.+.++++++..+.
T Consensus 59 ~ILEiGt~~G~Sti~la~al~----------~~g~v~sid~~~~~~~~a~~~~~~~gl---------------------- 106 (214)
T d2cl5a1 59 LVLELGAYCGYSAVRMARLLQ----------PGARLLTMEMNPDYAAITQQMLNFAGL---------------------- 106 (214)
T ss_dssp EEEEECCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHHHHHHHHTC----------------------
T ss_pred EEEEEccCchhHHHHHHHhCC----------CccEEEEEeccHHHHHHHHHHHHHcCC----------------------
Confidence 699999999999999998875 478999999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+..++..+. + .....||+|++-.. +........+.+..++|+|||++++=
T Consensus 107 ------------------~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~-~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 107 ------------------QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHW-KDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ------------------GGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSC-GGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred ------------------Cccceeeeccccccccchhhcccccccceeeeccc-ccccccHHHHHHHhCccCCCcEEEEe
Confidence 13566666654432 1 23356888876421 11111233466778899999998873
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
+
T Consensus 168 d 168 (214)
T d2cl5a1 168 N 168 (214)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.98 E-value=8.7e-10 Score=85.30 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
.||||++||+|.++..++. .+++++++|.|+.+++.|+++++..+. ...+++++.+|+..
T Consensus 134 ~rVLdlf~~tG~~sl~aa~-------------~GA~V~~VD~s~~al~~a~~N~~ln~~---~~~~~~~i~~D~~~ 193 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAA-------------AGAEVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDAMK 193 (309)
T ss_dssp CEEEEETCTTCHHHHHHHH-------------TTCEEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCHHH
T ss_pred CeEEEecCCCcHHHHHHHh-------------CCCeEEEEeChHHHHHHHHHhhhhhcc---cCCcEEEEeCCHHH
Confidence 3799999999999999887 367899999999999999999876554 22245555555433
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=1.6e-10 Score=82.29 Aligned_cols=45 Identities=7% Similarity=-0.022 Sum_probs=40.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|||+|||+|.++..++. .+++++++|.++.+++.++++++..+.
T Consensus 44 ~vLDl~~G~G~~~i~a~~-------------~ga~vv~vD~~~~a~~~~~~N~~~~~~ 88 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAAS-------------EGWEAVLVEKDPEAVRLLKENVRRTGL 88 (171)
T ss_dssp EEEEETCSSCHHHHHHHH-------------TTCEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred eEEEeccccchhhhhhhh-------------ccchhhhcccCHHHHhhhhHHHHhhcc
Confidence 799999999999988776 477899999999999999999987654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=4.9e-10 Score=82.87 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++..+. .+++++.+|.++...+.|++.++..+.
T Consensus 61 k~vLEiGt~~GyStl~~a~al~----------~~g~i~tie~~~~~~~~A~~~~~~ag~--------------------- 109 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALP----------ADGRVVTCEVDAQPPELGRPLWRQAEA--------------------- 109 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCSHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEEechhhHHHHHHHHhCC----------CCceEEEEeechhHHHHHHHHHHhcCc---------------------
Confidence 3799999999999999999875 478999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC------CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..++..+. ....++||+|+... ........+..+.+.|+|||.+++
T Consensus 110 -------------------~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~---dk~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 110 -------------------EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA---DKENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp -------------------TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS---CSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------cceEEEEEeehhhcchhhhhhcccCCccEEEEeC---CHHHHHHHHHHHHHHhcCCcEEEE
Confidence 24566666654321 12346788887743 233456678889999999999998
Q ss_pred Eee
Q psy889 155 LEF 157 (167)
Q Consensus 155 ~~~ 157 (167)
-..
T Consensus 168 Dn~ 170 (219)
T d2avda1 168 LRV 170 (219)
T ss_dssp ECC
T ss_pred eCC
Confidence 443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=7.4e-09 Score=77.80 Aligned_cols=79 Identities=4% Similarity=-0.127 Sum_probs=62.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
+|||+|||+|-++..++.... ..+++|+|+|+.+++.|+++++..+. +.++.....+.....
T Consensus 64 ~~LDiGtGsg~I~~~l~~~~~-----------~~~~~~~Di~~~al~~A~~N~~~n~l----~~~~~~~~~~~~~~~~~~ 128 (250)
T d2h00a1 64 RGIDIGTGASCIYPLLGATLN-----------GWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDA 128 (250)
T ss_dssp EEEEESCTTTTHHHHHHHHHH-----------CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTT
T ss_pred eEEEeCCCchHHHHHHHHhCC-----------CccccceecCHHHHHHHHHHHHHhCC----CcceeeeeeccHHhhhhh
Confidence 799999999999999999883 78999999999999999999987654 445655554433321
Q ss_pred ---CCCCCCceeeeeecccc
Q psy889 79 ---IESDSYSAYTIAFGIRN 95 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~ 95 (167)
.....||.+++.+|.-.
T Consensus 129 ~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 129 LKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp STTCCSCCBSEEEECCCCC-
T ss_pred hhhcccCceeEEEecCcccc
Confidence 34668999999999864
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=2.4e-09 Score=80.23 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=76.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++++ +..++++.|..+ .++ ..+.
T Consensus 83 ~vvDvGGG~G~~~~~l~~~~-----------P~l~~~v~Dlp~-vi~-------~~~~---------------------- 121 (244)
T d1fp2a2 83 SIVDVGGGTGTTAKIICETF-----------PKLKCIVFDRPQ-VVE-------NLSG---------------------- 121 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------TTCEEEEEECHH-HHT-------TCCC----------------------
T ss_pred EEEEecCCccHHHHHHHHhC-----------CCCeEEEecCHH-HHH-------hCcc----------------------
Confidence 69999999999999999998 478999999743 222 1111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCC---cEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPG---GRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~Lkpg---G~l~~~~ 156 (167)
..++.+...|+.... ..+|+|++.+++|.+++. .++|+++++.|+|| |++++.+
T Consensus 122 ------------------~~rv~~~~gD~f~~~---p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 122 ------------------SNNLTYVGGDMFTSI---PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp ------------------BTTEEEEECCTTTCC---CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ------------------cCceEEEecCcccCC---CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 157888888876532 247999999999988775 57899999999998 7888888
Q ss_pred ecccC
Q psy889 157 FSHVN 161 (167)
Q Consensus 157 ~~~~~ 161 (167)
.--++
T Consensus 181 ~~~~~ 185 (244)
T d1fp2a2 181 MVIDK 185 (244)
T ss_dssp CEECT
T ss_pred eecCC
Confidence 65444
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=4.3e-09 Score=76.63 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=57.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++++..+. +.++..+|..++
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g------------~~~v~~vdi~~~~~~~a~~N~~~~~~------~~~~~~~d~~~~--- 106 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLG------------AKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEF--- 106 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGC---
T ss_pred CEEEECcCcchHHHHHHHHcC------------CCEEEEEcCcHHHHHHHHHHHHHcCC------CceEEECchhhh---
Confidence 479999999999998877632 35899999999999999999876543 667777887665
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
.+.||.+.+.+|.
T Consensus 107 ~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 107 NSRVDIVIMNPPF 119 (201)
T ss_dssp CCCCSEEEECCCC
T ss_pred CCcCcEEEEcCcc
Confidence 4568888887776
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=3.2e-09 Score=76.16 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=67.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||++||+|.+++..+... ..+++.+|.++.+++.++++++....
T Consensus 45 ~~vLDlfaGsG~~giealsrG------------a~~v~~VE~~~~a~~~~k~N~~~~~~--------------------- 91 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRY------------AAGATLIEMDRAVSQQLIKNLATLKA--------------------- 91 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEECSCHHHHHHHHHHHHHTTC---------------------
T ss_pred hhhhhhhccccceeeeEEecC------------cceeEEEEEeechhhHHHHHHhhccc---------------------
Confidence 379999999999999887743 34799999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHH--hcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~ 154 (167)
.+..+...|... +......||+|++.=-.. ......++..+.+ +|+++|.+++
T Consensus 92 --------------------~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 92 --------------------GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp --------------------CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred --------------------cceeeeeecccccccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEE
Confidence 334444444332 222345577776632111 1234455555544 6999998887
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=2.5e-09 Score=77.69 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=54.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++.. ++++..+|+.+++
T Consensus 50 k~VLDlGcGtG~l~i~a~~~g------------a~~V~~vDid~~a~~~ar~N~~----------~~~~~~~D~~~l~-- 105 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLG------------AESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEIS-- 105 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTT------------BSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGCC--
T ss_pred CEEEEeCCCCcHHHHHHHHcC------------CCcccccccCHHHHHHHHHccc----------cccEEEEehhhcC--
Confidence 479999999999988766632 3579999999999999998753 4578888888764
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
+.||.+.+.+|.
T Consensus 106 -~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 106 -GKYDTWIMNPPF 117 (197)
T ss_dssp -CCEEEEEECCCC
T ss_pred -CcceEEEeCccc
Confidence 568888887765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.82 E-value=6.3e-09 Score=77.77 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=72.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++++. +..++++.|+.+. ++ ....
T Consensus 84 ~vvDvGGG~G~~~~~l~~~~-----------P~l~~~v~Dlp~v-i~-------~~~~---------------------- 122 (243)
T d1kyza2 84 SLVDVGGGTGAVINTIVSKY-----------PTIKGINFDLPHV-IE-------DAPS---------------------- 122 (243)
T ss_dssp EEEEETCTTSHHHHHHHHHC-----------TTSEEEEEECTTT-TT-------TCCC----------------------
T ss_pred EEEEecCCCcHHHHHHHHHC-----------CCCeEEEcccHHh-hh-------hccc----------------------
Confidence 69999999999999999998 4889999998653 11 1111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+.. +| ..|.++..+++|.+++ ..++|+++++.|+|||.+++.+.-
T Consensus 123 ------------------~~r~~~~~~d~~~~~P----~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 123 ------------------YPGVEHVGGDMFVSIP----KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp ------------------CTTEEEEECCTTTCCC----CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred ------------------CCceEEecccccccCC----CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 1467777777643 33 2467777788886654 678899999999999999998875
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
-++
T Consensus 181 ~~~ 183 (243)
T d1kyza2 181 LPV 183 (243)
T ss_dssp ECS
T ss_pred ecC
Confidence 443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.79 E-value=2.6e-09 Score=79.30 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=79.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|+++|..+..++..+. .+++++.+|.++...+.|++.+...+.
T Consensus 61 k~iLEiGT~~GyStl~la~al~----------~~g~v~tie~~~~~~~~A~~~~~~~g~--------------------- 109 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIP----------EDGKILAMDINKENYELGLPVIKKAGV--------------------- 109 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSC----------TTCEEEEEESCCHHHHHHHHHHHHTTC---------------------
T ss_pred CcEEEecchhhhhHHHHHhhCC----------CCcEEEEEeccchhHHHHHHHHHHhcc---------------------
Confidence 3799999999999999999885 478999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C------CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.++.++..+. + ...++||+|+.-. +.......+..+.+.|+|||.++
T Consensus 110 -------------------~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii 167 (227)
T d1susa1 110 -------------------DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIG 167 (227)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEE
T ss_pred -------------------ccceeeeehHHHHHHHHHHhccccCCceeEEEecc---chhhhHHHHHHHHhhcCCCcEEE
Confidence 14566766665432 1 1245799987743 23446678888999999999999
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 168 ~ 168 (227)
T d1susa1 168 Y 168 (227)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=6.1e-08 Score=73.47 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=61.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-CCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~ 80 (167)
+|+|+|||+|-.+..++. . +..+++++|+|+.+++.|+++++..+. ..++....++.... +..
T Consensus 113 ~vld~g~GsG~i~~~la~-~-----------~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~~i~~~~~~~~~~~~ 176 (271)
T d1nv8a_ 113 TVADIGTGSGAIGVSVAK-F-----------SDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKGEFLEPFKEK 176 (271)
T ss_dssp EEEEESCTTSHHHHHHHH-H-----------SSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEESSTTGGGGGG
T ss_pred EEEEeeeeeehhhhhhhh-c-----------ccceeeechhhhhHHHHHHHHHHHcCC----CceeEEeecccccccccc
Confidence 689999999999999874 4 378899999999999999999987665 34566667776553 345
Q ss_pred CCCCceeeeeeccc
Q psy889 81 SDSYSAYTIAFGIR 94 (167)
Q Consensus 81 ~~~fd~~~~~~~~~ 94 (167)
.+.||.++..+|.=
T Consensus 177 ~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 177 FASIEMILSNPPYV 190 (271)
T ss_dssp TTTCCEEEECCCCB
T ss_pred cCcccEEEEccccc
Confidence 57899988888763
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.71 E-value=2.1e-08 Score=77.58 Aligned_cols=130 Identities=11% Similarity=0.017 Sum_probs=84.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||.|+-+..++..+. ..+.+++.|.++.-+...++++++.+. .++.....|...++..
T Consensus 118 ~~vlD~CAapGgKt~~l~~~~~----------~~~~i~a~d~~~~r~~~l~~~~~r~~~-----~~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 118 EIVADMAAAPGGKTSYLAQLMR----------NDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGEL 182 (313)
T ss_dssp CEEEECCSSCSHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGGG
T ss_pred ceeeecccchhhhhHhhhhhcc----------cccceeeeccCHHHHHHHHHHHHHHHh-----hccccccccccccccc
Confidence 4799999999999999998775 467899999999999999999988765 2455556666666655
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
...||.+.+.-+=+.......+- ........-|+- .......+++.++.+.|||||++++++++-
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p--------~~~~~~~~~~~~------~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNP--------ERKWNRTMDDIK------FCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC----------------CCHHHHH------HHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccEEEEccccccCCceeecc--------chhhhhhhhHHH------HHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 66666555554433221100000 000000000000 012235678899999999999999877653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.63 E-value=1.7e-08 Score=72.21 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=70.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||++||+|.+++.++... ..+++.+|.++.+++.++++++....
T Consensus 43 ~~vLDlfaGsG~~g~ea~srG------------a~~v~~ve~~~~a~~~~~~N~~~~~~--------------------- 89 (182)
T d2fhpa1 43 GMALDLYSGSGGLAIEAVSRG------------MDKSICIEKNFAALKVIKENIAITKE--------------------- 89 (182)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHHTC---------------------
T ss_pred CEEEEcccccccccceeeecc------------hhHHHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 379999999999999888743 34699999999999999999976554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHH--hcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~ 154 (167)
..++.+...|.... ......||+|++-=-. ........+..+.+ +|+++|.+++
T Consensus 90 -------------------~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 90 -------------------PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp -------------------GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -------------------ccccccccccchhhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 12455555554321 1123357776552110 12334556666654 6999998876
Q ss_pred Eeeccc
Q psy889 155 LEFSHV 160 (167)
Q Consensus 155 ~~~~~~ 160 (167)
|....
T Consensus 150 -E~~~~ 154 (182)
T d2fhpa1 150 -ETDKT 154 (182)
T ss_dssp -EEETT
T ss_pred -EcCCC
Confidence 55443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1e-07 Score=72.66 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=42.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+|+|.|+-|..+++... .++++++|.++.-+...++++++.+.
T Consensus 104 ~~vLD~CAaPGgKt~~la~l~~-----------~~~i~a~d~~~~R~~~l~~~~~r~g~ 151 (284)
T d1sqga2 104 EHILDLCAAPGGKTTHILEVAP-----------EAQVVAVDIDEQRLSRVYDNLKRLGM 151 (284)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-----------TCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred ceeEeccCccccchhhhhhhhh-----------hhhhhhhhcchhhhhhHhhhhhcccc
Confidence 4799999999999999998653 68899999999999999999988775
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.45 E-value=2e-07 Score=72.02 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=73.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||.|||+|.+...+++.+.... ....+++|+|+++.++..|+.+...... ......+|... ....
T Consensus 120 ~vlDp~~GsG~~l~~~~~~l~~~~------~~~~~~~g~di~~~~~~~a~~~~~~~~~------~~~~~~~d~~~-~~~~ 186 (328)
T d2f8la1 120 SILDPACGTANLLTTVINQLELKG------DVDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLA-NLLV 186 (328)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTS------SCEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTS-CCCC
T ss_pred EEEeCCCCcchhHHHHHHHHHhcc------CccceEEEecccHHHHHHHHHHHHHhhh------hhhhhcccccc-cccc
Confidence 699999999999999887663110 0245799999999999999988765443 23333333222 2344
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..||.+++.+|......... .... ......+. .......+..+.+.|+|||++.++.
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~-----~~~~-~~~~~~~~------------~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDEN-----AKTF-ELCREEGH------------SFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp CCEEEEEEECCCSEESCHHH-----HTTS-TTCCSSSC------------EEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCCCCccchh-----hhhc-chhcccCc------------chHHHHHHHHHHHhcCCCCceEEEe
Confidence 56777777777632111000 0000 00000000 1112235678899999999988755
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.40 E-value=7.3e-08 Score=73.23 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=69.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||.+|+|.|..+..++++- ..+++++|+++.+++.+++.+..... ..+..
T Consensus 75 ~vLiiG~G~G~~~~~~l~~~------------~~~v~~VEiD~~Vi~~a~~~f~~~~~------~~~~~----------- 125 (276)
T d1mjfa_ 75 RVLVIGGGDGGTVREVLQHD------------VDEVIMVEIDEDVIMVSKDLIKIDNG------LLEAM----------- 125 (276)
T ss_dssp EEEEEECTTSHHHHHHTTSC------------CSEEEEEESCHHHHHHHHHHTCTTTT------HHHHH-----------
T ss_pred eEEEecCCchHHHHHHHHhC------------CceEEEecCCHHHHHHHHHhhhhccc------hhhhh-----------
Confidence 79999999999999887643 46899999999999999976531110 00000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc-ccc---HHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-VTR---IDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~---~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.....+++.+...|....--....||+|++-..-.. .+. ....++.+++.|+|||.++.-
T Consensus 126 --------------~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 126 --------------LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp --------------HTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------hccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 000014555555554332112356888876332111 111 256789999999999999873
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.39 E-value=4e-07 Score=64.86 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+.||||.+++..+... ..+++.+|.+..++...+++++..+.
T Consensus 45 ~~vLDlFaGsG~~glEalSRG------------A~~v~fVE~~~~a~~~ik~Ni~~l~~ 91 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQ------------AKKVTFLELDKTVANQLKKNLQTLKC 91 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTT------------CSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred ceEeecccCccceeeeeeeec------------ceeeEEeecccchhhhHhhHHhhhcc
Confidence 379999999999999999843 34899999999999999999987654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=4.2e-07 Score=70.10 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=71.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||.+|+|.|..+..++++. ...+++++|+++..++.+++.+..........
T Consensus 80 ~VLiiG~G~G~~~~~ll~~~-----------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d----------------- 131 (312)
T d1uira_ 80 RVLIVGGGEGATLREVLKHP-----------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD----------------- 131 (312)
T ss_dssp EEEEEECTTSHHHHHHTTST-----------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC-----------------
T ss_pred eEEEeCCCchHHHHHHHhcC-----------CcceEEEecCCHHHHHHHHhcCcccccCccCC-----------------
Confidence 79999999999999998865 36789999999999999998875332111112
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhc--cc--ccc---cHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFG--IR--NVT---RIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~--~~--~~~---~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.+...|.... ......||+|++-.. .. ..+ ..+..++.+.+.|+|||.++
T Consensus 132 -------------------~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv 192 (312)
T d1uira_ 132 -------------------PRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMG 192 (312)
T ss_dssp -------------------TTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEE
T ss_pred -------------------CceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEE
Confidence 3455555554332 122355788775321 11 011 12567899999999999998
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 193 ~ 193 (312)
T d1uira_ 193 M 193 (312)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=6e-07 Score=65.30 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=79.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|+|.|-=+..++-.. +..+++.+|.+..-+...+......+.
T Consensus 68 ~ilDiGsGaG~PGi~laI~~-----------p~~~~~Lves~~KK~~FL~~~~~~L~L---------------------- 114 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVR-----------PEAHFTLLDSLGKRVRFLRQVQHELKL---------------------- 114 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHC-----------TTSEEEEEESCHHHHHHHHHHHHHTTC----------------------
T ss_pred ceeeeeccCCceeeehhhhc-----------ccceEEEEecchHHHHHHHHHHHHcCC----------------------
Confidence 68999999998888887665 478999999999999999988877765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+.....++.. ....||+|++.. +..+..++.-+...+++||.+++.-
T Consensus 115 -------------------~nv~v~~~R~E~~~-~~~~fD~V~sRA----~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 115 -------------------ENIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -------------------SSEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -------------------cceeeeccchhhhc-cccccceehhhh----hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 56777776666653 245799988743 6778888888999999999999863
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.36 E-value=7e-08 Score=69.05 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=73.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
+.++|.++|.|+++..+++. .++++|+|.++.++..++++. ..+..+..+.+..+.
T Consensus 20 ~~~vD~T~G~GGhs~~iL~~-------------~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 20 GVYVDATLGGAGHARGILER-------------GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp CEEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHTC---------CTTEEEEESCGGGHHHH
T ss_pred CEEEEeCCCCcHHHHHHhcc-------------cCcEEEEhhhhhHHHHHhhcc---------ccceeEeehHHHHHHHH
Confidence 46899999999999999883 578999999999999888642 123444444444432
Q ss_pred ---CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 79 ---IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+..+.+|.++...|++.+..+. .-..+......|......|++||.+++.
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~---------------------------~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDD---------------------------PSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHC---------------------------GGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHcCCCccCEEEEEccCCHHHhhc---------------------------chHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 2334444444444443322110 0012234566788899999999999998
Q ss_pred eecccCC
Q psy889 156 EFSHVNN 162 (167)
Q Consensus 156 ~~~~~~~ 162 (167)
.+...+.
T Consensus 131 ~fhs~Ed 137 (182)
T d1wg8a2 131 AFHSLED 137 (182)
T ss_dssp ECSHHHH
T ss_pred ecccchh
Confidence 8865443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.36 E-value=5.4e-07 Score=66.76 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=57.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.+|..+++. +.+++++|+++.+++..+++... .++++...+|+...+++
T Consensus 23 d~VlEIGpG~G~LT~~Ll~~-------------~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 23 DNIFEIGSGKGHFTLELVQR-------------CNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFKFP 82 (235)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCCCC
T ss_pred CeEEEECCCchHHHHHHHhC-------------cCceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhhhcccc
Confidence 47999999999999999984 46799999999999999987642 35789999999988766
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
......++-..|.
T Consensus 83 ~~~~~~vv~NLPY 95 (235)
T d1qama_ 83 KNQSYKIFGNIPY 95 (235)
T ss_dssp SSCCCEEEEECCG
T ss_pred ccccceeeeeehh
Confidence 5444444444444
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.1e-06 Score=67.04 Aligned_cols=76 Identities=7% Similarity=-0.043 Sum_probs=57.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||.|+-+..++..+. ...+++++|+++.-+...++++++.+. .+++....|...++..
T Consensus 96 ~~vLD~cAapGgKt~~la~l~~----------~~~~i~a~d~~~~R~~~l~~~l~r~g~-----~~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 96 SHVIDACAAPGNKTSHLAALLK----------NQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAVSPS 160 (293)
T ss_dssp CEEEESSCTTCHHHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGSCTT
T ss_pred ceEEecccchhhHHHHHHHHhc----------CCceEeeecCCHHHHHHHHHHHHhcCc-----cceeeeehhhhhhccc
Confidence 4799999999999999998875 367899999999999999999988775 3456666666665422
Q ss_pred C---CCCceeeeee
Q psy889 81 S---DSYSAYTIAF 91 (167)
Q Consensus 81 ~---~~fd~~~~~~ 91 (167)
. +.||.+.+.-
T Consensus 161 ~~~~~~fD~VL~Da 174 (293)
T d2b9ea1 161 DPRYHEVHYILLDP 174 (293)
T ss_dssp CGGGTTEEEEEECC
T ss_pred ccccceeeEEeecC
Confidence 1 3455544443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=2.5e-07 Score=70.84 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=71.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|+|.|..+..++++. ...+++++|+++.+++.+++.+..... ....
T Consensus 92 ~VLiiGgG~G~~~r~~l~~~-----------~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d----------------- 142 (295)
T d1inla_ 92 KVLIIGGGDGGTLREVLKHD-----------SVEKAILCEVDGLVIEAARKYLKQTSC-GFDD----------------- 142 (295)
T ss_dssp EEEEEECTTCHHHHHHTTST-----------TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGC-----------------
T ss_pred eEEEecCCchHHHHHHHhcC-----------CCceEEEecCCHHHHHHHHHHHHhhcc-cccC-----------------
Confidence 79999999999999998865 367899999999999999987643211 0011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccc-cc----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN-VT----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~-~~----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|... +......||+|++-..-.. .+ .....++.+++.|+|||.++.-
T Consensus 143 -------------------~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 143 -------------------PRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp -------------------TTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------CCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 455555555433 2223456888876322111 11 1367889999999999999874
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.5e-07 Score=69.71 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=71.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+..... ....
T Consensus 81 ~vLiiGgG~G~~~~~~l~~~-----------~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d----------------- 131 (285)
T d2o07a1 81 KVLIIGGGDGGVLREVVKHP-----------SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSS----------------- 131 (285)
T ss_dssp EEEEEECTTSHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGC-----------------
T ss_pred eEEEeCCCchHHHHHHHHcC-----------CcceeeeccCCHHHHHHHHhhchhhcc-ccCC-----------------
Confidence 79999999999999998865 367899999999999999987643211 0011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccc-ccc---cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIR-NVT---RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~-~~~---~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|.... .....+||+|++-..-. ..+ ..+..++.+.+.|+|||.+++-.
T Consensus 132 -------------------~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 132 -------------------SKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp -------------------TTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 4555555554331 22345688887632110 011 12466889999999999998743
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.26 E-value=4.6e-07 Score=68.63 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=71.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+..... ....
T Consensus 78 ~vLiiGgG~G~~~~~~l~~~-----------~~~~i~~VEID~~Vi~~a~~~~~~~~~-~~~d----------------- 128 (274)
T d1iy9a_ 78 HVLVVGGGDGGVIREILKHP-----------SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDD----------------- 128 (274)
T ss_dssp EEEEESCTTCHHHHHHTTCT-----------TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTS-----------------
T ss_pred eEEecCCCCcHHHHHHHhcC-----------CcceEEEecCCHHHHHHHHHhChhhcc-cccC-----------------
Confidence 79999999999999998865 267899999999999999987643221 1112
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccc-c-c--cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN-V-T--RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~-~-~--~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|... +...+.+||+|+.-..-.. . . ..+..++.+.+.|+|||.++.-
T Consensus 129 -------------------~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 129 -------------------PRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp -------------------TTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred -------------------CCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 345554444432 1122345777765321110 0 0 1467788999999999999873
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.21 E-value=8.3e-07 Score=67.70 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=72.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+..... ...
T Consensus 83 ~VLiiGgG~G~~~r~~l~~~-----------~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~------------------ 132 (290)
T d1xj5a_ 83 KVLVIGGGDGGVLREVARHA-----------SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYE------------------ 132 (290)
T ss_dssp EEEEETCSSSHHHHHHTTCT-----------TCCEEEEEESCHHHHHHHHHHCHHHHG-GGG------------------
T ss_pred ceEEecCCchHHHHHHHhcc-----------cceeeEEecCCHHHHHHHHHhchhhhc-ccc------------------
Confidence 79999999999999998865 256899999999999999987643211 001
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccc-ccc---cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIR-NVT---RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~-~~~---~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.++.+...|.... ...++.||+|+.-..-. ..+ .....++.+++.|+|||.+++-
T Consensus 133 ------------------~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 133 ------------------DPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp ------------------STTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 14555555554332 12234688777532110 111 1356789999999999999884
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 195 ~ 195 (290)
T d1xj5a_ 195 A 195 (290)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.19 E-value=4.4e-07 Score=69.89 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=68.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+..... ....
T Consensus 109 ~VLIiGgG~G~~~rellk~~-----------~v~~v~~VEID~~Vv~~a~~~~~~~~~-~~~d----------------- 159 (312)
T d2b2ca1 109 RVLIIGGGDGGILREVLKHE-----------SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSH----------------- 159 (312)
T ss_dssp EEEEESCTTSHHHHHHTTCT-----------TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGC-----------------
T ss_pred eEEEeCCCchHHHHHHHHcC-----------CcceEEEEcccHHHHHHHHhhchhhcc-ccCC-----------------
Confidence 79999999999999998865 257899999999999999986542211 0011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccc-cc---cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN-VT---RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~-~~---~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|.... ......||+|++-..-.. .+ ..+..++.+++.|+|||.++.-
T Consensus 160 -------------------prv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 160 -------------------PKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp -------------------TTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred -------------------CCeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 3455555544331 122355788876322110 01 1356678999999999999874
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=3.1e-06 Score=65.76 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=59.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
+|||+.||+|.++..+++. ..+++|+|.++.+++.|++++...+. .+.++..++.+...
T Consensus 215 ~vlDLycG~G~fsl~La~~-------------~~~V~gvE~~~~ai~~A~~na~~n~i-----~n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 215 RVLDLFCGMGNFTLPLATQ-------------AASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHENLEEDVTKQ 276 (358)
T ss_dssp EEEEESCTTTTTHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCTTSCCSSS
T ss_pred eEEEecccccccchhcccc-------------ccEEEeccCcHHHHHHHHHhHHhccc-----ccceeeecchhhhhhhh
Confidence 7999999999999999873 57899999999999999999876554 46788888766632
Q ss_pred -CCCCCCceeeeeecccc
Q psy889 79 -IESDSYSAYTIAFGIRN 95 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~ 95 (167)
.....||.+++.++...
T Consensus 277 ~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 277 PWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp GGGTTCCSEEEECCCTTC
T ss_pred hhhhccCceEEeCCCCcc
Confidence 34566777777666643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.15 E-value=1.1e-07 Score=70.95 Aligned_cols=72 Identities=7% Similarity=0.151 Sum_probs=59.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.+|..+++. +.+++++|+++.+++.+++++. ..++++...+|+..++++.
T Consensus 32 ~VLEIGpG~G~LT~~L~~~-------------~~~v~aIE~D~~l~~~l~~~~~-------~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 32 TVYEIGTGKGHLTTKLAKI-------------SKQVTSIELDSHLFNLSSEKLK-------LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp EEEECSCCCSSCSHHHHHH-------------SSEEEESSSSCSSSSSSSCTTT-------TCSEEEECCSCCTTTTCCC
T ss_pred eEEEECCCccHHHHHHHhh-------------cCceeEeeecccchhhhhhhhh-------hccchhhhhhhhhcccccc
Confidence 6999999999999999884 5689999999999888876543 2357899999999988887
Q ss_pred CCCceeeeeecc
Q psy889 82 DSYSAYTIAFGI 93 (167)
Q Consensus 82 ~~fd~~~~~~~~ 93 (167)
..+..++...+.
T Consensus 92 ~~~~~vv~NLPY 103 (245)
T d1yuba_ 92 KQRYKIVGNIPY 103 (245)
T ss_dssp SSEEEEEEECCS
T ss_pred ceeeeEeeeeeh
Confidence 777767766664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=3.2e-06 Score=62.60 Aligned_cols=99 Identities=20% Similarity=0.131 Sum_probs=77.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|+|.|-=+..++-.. +..+++.+|.+..-+...+.-....+.
T Consensus 73 ~ilDiGSGaGfPGi~laI~~-----------p~~~v~Lves~~KK~~FL~~v~~~L~L---------------------- 119 (239)
T d1xdza_ 73 TICDVGAGAGFPSLPIKICF-----------PHLHVTIVDSLNKRITFLEKLSEALQL---------------------- 119 (239)
T ss_dssp EEEEECSSSCTTHHHHHHHC-----------TTCEEEEEESCHHHHHHHHHHHHHHTC----------------------
T ss_pred eEEeecCCCchHHHHHHHhC-----------CCccceeecchHHHHHHHHHHHHHhCC----------------------
Confidence 68999999998888887665 478999999999999998887777766
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.++....+.+. .....||+|++. .+..+..++.-+...+++||.+++.-
T Consensus 120 -------------------~n~~i~~~R~E~~~~~~~~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 120 -------------------ENTTFCHDRAETFGQRKDVRESYDIVTAR----AVARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp -------------------SSEEEEESCHHHHTTCTTTTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CCcEEEeehhhhccccccccccceEEEEh----hhhCHHHHHHHHhhhcccCCEEEEEC
Confidence 55666655544432 224579999884 37788888999999999999998854
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.07 E-value=1.3e-06 Score=62.96 Aligned_cols=122 Identities=15% Similarity=0.056 Sum_probs=65.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||.|||+|.+...+.+... ....++|+|+++..+..++ ......++..... .
T Consensus 21 ~~IlDp~~G~G~fl~~~~~~~~----------~~~~i~g~ei~~~~~~~~~--------------~~~~~~~~~~~~~-~ 75 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFREAHG----------TAYRFVGVEIDPKALDLPP--------------WAEGILADFLLWE-P 75 (223)
T ss_dssp CEEEEETCTTCHHHHHHHHHHC----------SCSEEEEEESCTTTCCCCT--------------TEEEEESCGGGCC-C
T ss_pred CEEEECCCchHHHHHHHHHhcc----------ccceEEeeecCHHHHhhcc--------------cceeeeeehhccc-c
Confidence 3799999999999988887664 3567999999987644332 1122333433322 3
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hccccccc-HHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVTR-IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...||.+...++........... ........+..... .......+ ....+..+.+.|++||++.++.
T Consensus 76 ~~~fd~ii~npP~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 76 GEAFDLILGNPPYGIVGEASKYP---------IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCS---------BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceecccCcccccccccccc---------chhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 35667666665543221110000 00000001111100 00011122 2345678899999999998865
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.76 E-value=7.8e-05 Score=59.11 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=76.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCC--CCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLS--EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.+|+|.+||+|++...+.+++......... ......++|+|+++.+...|+.+..-.+. ...+.....+|... .
T Consensus 164 ~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~---~~~~~~i~~~d~l~-~ 239 (425)
T d2okca1 164 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---GTDRSPIVCEDSLE-K 239 (425)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---CSSCCSEEECCTTT-S
T ss_pred ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC---ccccceeecCchhh-h
Confidence 479999999999999998877421100000 00123599999999999999988765544 22223333444332 2
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+...||.++..+|.......... .......... ...--..+..+.+.|++||++.++.
T Consensus 240 ~~~~~fD~Ii~NPPfg~~~~~~~~-----~~~~~~~~~~--------------~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 240 EPSTLVDVILANPPFGTRPAGSVD-----INRPDFYVET--------------KNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCC-----CCCTTSSSCC--------------SCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccceEEecCCCCCCccccch-----hhhhhccccc--------------ccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 456678888888888432211110 0000000000 0111235667888999999888754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=5.4e-05 Score=57.03 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=56.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|+|.|.+|..+++. +.+++++|+++.+++..++++.... ...+++...+|+.+.+++
T Consensus 23 d~VlEIGPG~G~LT~~Ll~~-------------~~~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 23 DVVLEVGPGTGNMTVKLLEK-------------AKKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp CEEEEECCTTSTTHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESCTTTSCCC
T ss_pred CEEEEECCCchHHHHHHHhc-------------CCcEEEEEEccchhHHHHHHHhhhc----cccchhhhHHHHhhhhhh
Confidence 36999999999999999984 4689999999999999998875432 135788888998776544
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
. +..++-..|.
T Consensus 86 ~--~~~vV~NLPY 96 (278)
T d1zq9a1 86 F--FDTCVANLPY 96 (278)
T ss_dssp C--CSEEEEECCG
T ss_pred h--hhhhhcchHH
Confidence 2 3445544444
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.69 E-value=1.1e-05 Score=59.35 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=27.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
+|||+|++.|..+..++..+.... ..++++++|++..
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~-------~~~kI~giDId~~ 119 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMG-------IDCQVIGIDRDLS 119 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT-------CCCEEEEEESCCT
T ss_pred EEEEECCCCchHHHHHHHHHHhcC-------CCceEEecCcChh
Confidence 699999999988877766542111 3688999999764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=3.2e-05 Score=57.52 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=47.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
.|||+|||.|.+|..+++. ..+++++|+++.+++..+++.. ..++++...+|+...+
T Consensus 24 ~vlEIGpG~G~LT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~-------~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 24 AMVEIGPGLAALTEPVGER-------------LDQLTVIELDRDLAARLQTHPF-------LGPKLTIYQQDAMTFN 80 (252)
T ss_dssp CEEEECCTTTTTHHHHHTT-------------CSCEEEECCCHHHHHHHHTCTT-------TGGGEEEECSCGGGCC
T ss_pred EEEEECCCchHHHHHHHcc-------------CCceEEEEeccchhHHHHHHhh-------hccchhHHhhhhhhhc
Confidence 6999999999999999983 5789999999999999886442 2347888888888764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.58 E-value=3.1e-05 Score=60.77 Aligned_cols=115 Identities=17% Similarity=0.072 Sum_probs=70.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||..||+|..+++.+...+ ..+++..|+|+..++.++++++..+.... .
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~-----------~~~V~~nDis~~A~~~i~~N~~lN~~~~~-----~------------ 98 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETP-----------AEEVWLNDISEDAYELMKRNVMLNFDGEL-----R------------ 98 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSS-----------CSEEEEEESCHHHHHHHHHHHHHHCCSCC-----E------------
T ss_pred CEEEEcCCCccHHHHHHHHhCC-----------CCEEEEecCCHHHHHHHHHHHHhcCcccc-----c------------
Confidence 3799999999999999888763 56899999999999999999875443000 0
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
............++.+...|...+. .....||+|-+ .-+......++.+.+.++.||.|.++.
T Consensus 99 ---------~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDi----DPfGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 99 ---------ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDL----DPFGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp ---------ECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------cccccccccccceeEeehhhhhhhhHhhcCcCCcccC----CCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence 0000000000022333344432221 12234776644 223344567788888899999998853
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.00052 Score=48.13 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=28.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
++|||+||+.|+.+..+.+... ....++++|+.+
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~----------~~~~v~~vDl~~ 57 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIG----------GKGRIIACDLLP 57 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHC----------TTCEEEEEESSC
T ss_pred CeEEEEeccCCcceEEEEeecc----------ccceEEEeeccc
Confidence 4799999999999999998875 357799999754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.00029 Score=57.22 Aligned_cols=133 Identities=7% Similarity=-0.148 Sum_probs=71.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCC-------CCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS-------EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 74 (167)
+|+|.+||+|.+...+.+++......... ......++|.|+++.+...|+.++--.+....-........++.
T Consensus 167 ~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~ 246 (524)
T d2ar0a1 167 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNT 246 (524)
T ss_dssp CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCT
T ss_pred hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence 79999999999998888876421110000 00023589999999999999988754443100000000111111
Q ss_pred ccCC-CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 75 EELP-IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 75 ~~l~-~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..-+ .....||.++..+|........... ........- --..+..+.+.|++||++.
T Consensus 247 l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~--------~~~~~~~~~--------------~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 247 LGSDGENLPKAHIVATNPPFGSAAGTNITR--------TFVHPTSNK--------------QLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp TSHHHHTSCCEEEEEECCCCTTCSSCCCCS--------CCSSCCSCH--------------HHHHHHHHHHHEEEEEEEE
T ss_pred hhhcccccccceeEEecCCccccccccchh--------hhccccccc--------------cHHHHHHHHHhccccCcEE
Confidence 1101 3456788888887774322110000 000000001 1235677889999999988
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
++.
T Consensus 305 iIl 307 (524)
T d2ar0a1 305 VVV 307 (524)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.35 E-value=0.00011 Score=57.13 Aligned_cols=157 Identities=8% Similarity=-0.097 Sum_probs=74.8
Q ss_pred CeEEeeecCCCchHHHHHHhhc----c-CCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVD----K-LPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (167)
++|.|+||.+|..|+.+...+- + ..+.....++..+++--|....--...-+.+.... ...+.-.+..+.+++.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~-~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc-cCCCCeEEEecCCchh
Confidence 3789999999988865443210 0 00000011135567777775543333322221110 0011123444555566
Q ss_pred cCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 76 ELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 76 ~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
+=-||.++.+++..+..++=+-.....+........... .+..-..++... .-.|...+|+.=.+-|+|||++++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Q----f~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQ----FQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHH----HHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcEEEE
Confidence 656777777777777776554321111100000000000 000000111110 123556667666788999999999
Q ss_pred EeecccCC
Q psy889 155 LEFSHVNN 162 (167)
Q Consensus 155 ~~~~~~~~ 162 (167)
+-++.++.
T Consensus 208 ~~~gr~~~ 215 (359)
T d1m6ex_ 208 TILGRRSE 215 (359)
T ss_dssp EEEECSSS
T ss_pred EEeccCCC
Confidence 98887764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.76 E-value=0.002 Score=47.31 Aligned_cols=32 Identities=6% Similarity=-0.182 Sum_probs=24.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN 43 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s 43 (167)
++|+|+|||.|+-+..++... ....+.|.++-
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~-----------~v~~V~g~~iG 99 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLK-----------NVREVKGLTKG 99 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTST-----------TEEEEEEECCC
T ss_pred CeEEEecCCCChHHHHHHhhc-----------CCCceeEEEec
Confidence 479999999999999998753 24456677763
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.0033 Score=47.79 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=44.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
.|||+|+|.|.+|..++++.. ..+++++|.++.+.+..++..+ .++++...+|+..
T Consensus 46 ~VlEIGPG~G~LT~~Ll~~~~-----------~~~v~~iE~D~~~~~~L~~~~~--------~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 46 KVLDLYPGVGIQSAIFYNKYC-----------PRQYSLLEKRSSLYKFLNAKFE--------GSPLQILKRDPYD 101 (322)
T ss_dssp EEEEESCTTCHHHHHHHHHHC-----------CSEEEEECCCHHHHHHHHHHTT--------TSSCEEECSCTTC
T ss_pred eEEEECCCCCHHHHHHHhcCC-----------CCEEEEEECCHHHHHHHHHhcc--------CCCcEEEeCchhh
Confidence 599999999999999998762 4589999999999999887653 2356677777654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.31 E-value=0.0067 Score=41.16 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=29.8
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=+||| .|..+..++++. +.+++++|.++.-++.+++.
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~------------Ga~vi~v~~~~~r~~~a~~~ 69 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY------------GAFVVCTARSPRRLEVAKNC 69 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHT
T ss_pred EEEEEcccccchhhHhhHhhh------------cccccccchHHHHHHHHHHc
Confidence 56777776 455555556554 78999999999999888863
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.29 E-value=0.0018 Score=48.07 Aligned_cols=43 Identities=5% Similarity=-0.101 Sum_probs=37.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
..|||..||+|..+.+..+ .+-.++|+|++++.++.+++|+..
T Consensus 252 diVlDpF~GSGTT~~AA~~-------------lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 252 DLVVDIFGGSNTTGLVAER-------------ESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CEEEETTCTTCHHHHHHHH-------------TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred CEEEecCCCCcHHHHHHHH-------------cCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3699999999999988766 378899999999999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.13 E-value=0.0029 Score=46.17 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=38.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
.|||..||+|..+.+... + +-+++|+|+++..++.+++|+....
T Consensus 210 iVLDpF~GSGTT~~Aa~~-l------------gR~~ig~El~~~y~~~a~~Ri~~~~ 253 (279)
T d1eg2a_ 210 TVLDFFAGSGVTARVAIQ-E------------GRNSICTDAAPVFKEYYQKQLTFLQ 253 (279)
T ss_dssp EEEETTCTTCHHHHHHHH-H------------TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcHHHHHHHH-h------------CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence 699999999999888766 2 6789999999999999999997643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.77 E-value=0.005 Score=42.46 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=29.4
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||-+|+|. |..+..++++. +. +++++|.++.-++.+++
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~------------Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSL------------GAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TBSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccchhheeccccc------------cccccccccccccccccccc
Confidence 577777763 55666666665 55 79999999999998875
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.71 E-value=0.011 Score=43.83 Aligned_cols=75 Identities=7% Similarity=0.080 Sum_probs=52.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
|+|+|+.||.|.++.-+-++. .-.+.++|+++.+++..+.+... ....+|+.++. -
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG------------~~~~~a~e~d~~a~~~~~~N~~~-----------~~~~~Di~~~~~~ 57 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAG------------FRIICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSD 57 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHT------------CEEEEEEECCHHHHHHHHHHCCS-----------EEEESCTTTSCGG
T ss_pred CeEEEeCcCcCHHHHHHHHCC------------CEEEEEEeCCHHHHHHHHHHCCC-----------CCccCChhhCCHh
Confidence 899999999999998886643 23456999999998887776532 24567777765 3
Q ss_pred CCCCCceeeeeeccccccC
Q psy889 80 ESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~ 98 (167)
+....|.+..+++=..+-.
T Consensus 58 ~~~~~dll~~g~PCq~fS~ 76 (324)
T d1dcta_ 58 EFPKCDGIIGGPPCQSWSE 76 (324)
T ss_dssp GSCCCSEEEECCCCTTTSS
T ss_pred HcccccEEeeccccccccc
Confidence 3345676666666555543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.64 E-value=0.0082 Score=42.10 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=31.7
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||-+|||. |..+..+++... ..+++++|.++.-++.+++.
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~g-----------a~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLG-----------AAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHT
T ss_pred EEEEECcCHHHHHHHHHHHhhc-----------ccceeeecccchhhHhhhhc
Confidence 688899987 455666666552 55899999999999988864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.54 E-value=0.0074 Score=41.51 Aligned_cols=40 Identities=5% Similarity=-0.038 Sum_probs=29.3
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|||. |..+..+++... ..+++++|.++.-++.+++
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~G-----------a~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRG-----------AGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTT-----------CSCEEEECCCHHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhccc-----------ccccccccchhhhHHHHHh
Confidence 466677775 666777777552 2479999999988888875
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.44 E-value=0.019 Score=42.74 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=53.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~- 78 (167)
|||+|+.||.|.++..+-+. +.+ +.++|+++.+++..+.+... ...+|+.++.
T Consensus 12 lrv~~lFsG~Gg~~~gl~~a-------------G~~~v~a~e~d~~a~~~~~~N~~~------------~~~~Di~~~~~ 66 (327)
T d2c7pa1 12 LRFIDLFAGLGGFRLALESC-------------GAECVYSNEWDKYAQEVYEMNFGE------------KPEGDITQVNE 66 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHT-------------TCEEEEEECCCHHHHHHHHHHHSC------------CCBSCGGGSCG
T ss_pred CeEEEECccccHHHHHHHHC-------------CCeEEEEEeCCHHHHHHHHHHCCC------------CCcCchhcCch
Confidence 79999999999999988663 344 55799999999998877632 1246777764
Q ss_pred CCCCCCceeeeeeccccccCC
Q psy889 79 IESDSYSAYTIAFGIRNIDIP 99 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~ 99 (167)
-+...+|.++.+++=..+-..
T Consensus 67 ~~~~~~Dll~ggpPCq~fS~a 87 (327)
T d2c7pa1 67 KTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp GGSCCCSEEEEECCCTTTCTT
T ss_pred hhcceeeeeecccccchhhhh
Confidence 334567888877776655433
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.27 E-value=0.037 Score=42.32 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=49.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.|+|+|+|+|.++..+++.+...+ .......++-+|.|+.+.+..++++... .+++|.. +.+.++
T Consensus 82 ~ivE~GaG~G~La~dil~~l~~~~----~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-------~~i~w~~-~~~~~~~~~ 149 (365)
T d1zkda1 82 RLIEIGPGRGTMMADALRALRVLP----ILYQSLSVHLVEINPVLRQKQQTLLAGI-------RNIHWHD-SFEDVPEGP 149 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSH----HHHTTEEEEEECCCHHHHHHHHHHSTTC-------SSEEEES-SGGGSCCSS
T ss_pred eEEecCCcccHHHHhhhhhhcccc----cccccceEEEeccchhHHHHHHHHhccc-------ccceecc-ChhhcccCC
Confidence 599999999999999988764210 0002456899999998877777665432 2344432 233332
Q ss_pred ---CCCCCCceeeee
Q psy889 79 ---IESDSYSAYTIA 90 (167)
Q Consensus 79 ---~~~~~fd~~~~~ 90 (167)
+.++-||+..+.
T Consensus 150 g~iiaNE~fDAlPv~ 164 (365)
T d1zkda1 150 AVILANEYFDVLPIH 164 (365)
T ss_dssp EEEEEESSGGGSCCE
T ss_pred eEEEecccCccccce
Confidence 566666655544
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.25 E-value=0.013 Score=42.81 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=51.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCC----CCccccccccccc-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEE- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~d~~~- 76 (167)
+|||..||.|..++.++.. +.+++++|.++.+....+..+++....... ..++++..+|..+
T Consensus 91 ~VlD~TaGlG~Da~vlA~~-------------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~ 157 (250)
T d2oyra1 91 DVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_dssp CEEETTCTTCHHHHHHHHH-------------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred EEEECCCcccHHHHHHHhC-------------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence 7999999999999999873 678999999998888777766554321110 1267777777555
Q ss_pred CCCCCCCCceeeee
Q psy889 77 LPIESDSYSAYTIA 90 (167)
Q Consensus 77 l~~~~~~fd~~~~~ 90 (167)
+.-....||.+-+.
T Consensus 158 L~~~~~~~DvIYlD 171 (250)
T d2oyra1 158 LTDITPRPQVVYLD 171 (250)
T ss_dssp STTCSSCCSEEEEC
T ss_pred HhccCCCCCEEEEC
Confidence 33223445544433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.002 Score=44.14 Aligned_cols=40 Identities=5% Similarity=-0.118 Sum_probs=31.3
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||-+|+| .|..+..++++. +.+++++|.+++.++.+++.
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAM------------GAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCEEEEEESSSTTHHHHHHH
T ss_pred EEEEECCCCcchhHHHHhhhc------------cccccccccchhHHHHhhcc
Confidence 67778887 556666666665 78999999999999888753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.05 Score=36.70 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=27.3
Q ss_pred eEEeeecCCCch-HHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGDI-AFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~~-~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|...+ +..++++. +. +++++|.++.-++.+++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~------------G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM------------GAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHc------------CCceEEeccCCHHHHHHHHH
Confidence 466677765444 44444444 55 79999999999998875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.18 E-value=0.056 Score=36.16 Aligned_cols=41 Identities=7% Similarity=-0.101 Sum_probs=28.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|+|.=+|+| .++..++..+.. .+.++++.|.+++.++.+++
T Consensus 1 MkI~iIG~G--~mG~~lA~~l~~---------~g~~V~~~d~~~~~~~~a~~ 41 (165)
T d2f1ka2 1 MKIGVVGLG--LIGASLAGDLRR---------RGHYLIGVSRQQSTCEKAVE 41 (165)
T ss_dssp CEEEEECCS--HHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEEeec--HHHHHHHHHHHH---------CCCEEEEEECCchHHHHHHH
Confidence 788889775 444444444421 37789999999988887764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.027 Score=38.26 Aligned_cols=39 Identities=10% Similarity=-0.146 Sum_probs=29.0
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-.|+ |.|..+..++++. +.++++++.+++-.+.+++
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~------------G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAY------------GLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEecccccccccccccccc------------Ccccccccccccccccccc
Confidence 5777775 5566677777765 7899999988877777764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.81 E-value=0.08 Score=36.04 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=30.9
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|||. |..+..+++... ...++++|.++.-++.+++
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~G-----------a~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIAG-----------ASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhC-----------CceeeeeccchHHHHHHHH
Confidence 567788877 677777777662 3479999999998888875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.11 E-value=0.038 Score=37.20 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=29.2
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=+|| +.|..+..++++.. ...++++|.++.-++.+++.
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~g-----------~~~V~~~~~~~~~~~~~~~~ 72 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAVS-----------GATIIGVDVREEAVEAAKRA 72 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHT-----------CCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEeccccceeeeeecccccc-----------cccccccccchhhHHHHHHc
Confidence 4666775 34555666666652 46899999999888888753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.038 Score=41.01 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=48.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~- 78 (167)
|+|+|+.||.|.++..+-+.. -..+ +.++|+++.+++..+.+.. ......+|+..+.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG-----------~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~ 61 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESC-----------IPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITL 61 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHT-----------CSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCH
T ss_pred CEEEEcCcCccHHHHHHHHcC-----------CCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCH
Confidence 689999999999988876543 1223 5689999999888887643 2234556777664
Q ss_pred --CCCCCCceeeeeeccccc
Q psy889 79 --IESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~ 96 (167)
++....|...-+++=..+
T Consensus 62 ~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 62 EEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp HHHHHHCCSEEEECCC----
T ss_pred hHcCCCCccEEEeecccccc
Confidence 333356666666554443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.53 E-value=0.1 Score=35.19 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=24.0
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+|+|+-. ......++.+.+.++|+|.+++.-..
T Consensus 95 gg~D~vid~------~G~~~~~~~~~~~~~~~G~i~~~G~~ 129 (174)
T d1f8fa2 95 GGVNFALES------TGSPEILKQGVDALGILGKIAVVGAP 129 (174)
T ss_dssp SCEEEEEEC------SCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCCcEEEEc------CCcHHHHHHHHhcccCceEEEEEeec
Confidence 346666432 22346778889999999999886543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.81 E-value=0.21 Score=33.20 Aligned_cols=43 Identities=14% Similarity=0.005 Sum_probs=28.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+|+=+||| .++..++..+.+.- ...+++++|.+++.++.+++.
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g-------~~~~I~~~D~~~~~~~~a~~~ 45 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSG-------FKGKIYGYDINPESISKAVDL 45 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTT-------CCSEEEEECSCHHHHHHHHHT
T ss_pred EEEEEccC--HHHHHHHHHHHhcC-------CCeEEEEEECChHHHHHHHHh
Confidence 37788875 44444444432100 245799999999999988864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.12 E-value=0.11 Score=34.86 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=29.9
Q ss_pred eEEeeecC--CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=.|++ .|..+..+++.. +.++++++.+++-.+.+++.
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~------------Ga~Vi~~~~s~~k~~~~~~l 72 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKAL------------GAKLIGTVGTAQKAQSALKA 72 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEccccccchHHHHHHHHh------------CCeEeecccchHHHHHHHhc
Confidence 45555333 567777777766 79999999999999888754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.01 E-value=0.034 Score=38.25 Aligned_cols=34 Identities=18% Similarity=-0.048 Sum_probs=26.3
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.|.|..+..++++. +.+++++..+++-.+.+++.
T Consensus 42 GGVG~~aiQlak~~------------Ga~Viat~~s~~k~~~~~~l 75 (176)
T d1xa0a2 42 GGVGSLAVSMLAKR------------GYTVEASTGKAAEHDYLRVL 75 (176)
T ss_dssp SHHHHHHHHHHHHT------------TCCEEEEESCTTCHHHHHHT
T ss_pred chHHHHHHHHHHHc------------CCceEEecCchHHHHHHHhc
Confidence 45667777777765 89999999998888888753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.98 E-value=0.21 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.394 Sum_probs=33.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
|+|+=+|+ |.++..+++.+.. .+.+++.+|.+++.++.+.+.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~---------~g~~v~vid~d~~~~~~~~~~ 42 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSE---------KGHDIVLIDIDKDICKKASAE 42 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHH---------CCCCcceecCChhhhhhhhhh
Confidence 77877765 8899999887742 477899999999998877654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.71 E-value=0.033 Score=38.21 Aligned_cols=42 Identities=17% Similarity=-0.028 Sum_probs=30.7
Q ss_pred eEEeeecCCCch-HHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDI-AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|+=+|+|.=.. +.+.+..+ ++.++.+|.+.+.++..+..+.
T Consensus 34 ~V~ViGaGvaG~~A~~~A~~l------------GA~V~~~D~~~~~l~~l~~~~~ 76 (168)
T d1pjca1 34 KVVILGGGVVGTEAAKMAVGL------------GAQVQIFDINVERLSYLETLFG 76 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHHHG
T ss_pred EEEEECCChHHHHHHHHHhhC------------CCEEEEEeCcHHHHHHHHHhhc
Confidence 677888886444 44444444 8999999999999888776553
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.23 E-value=0.27 Score=37.88 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=39.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.++|+|+..|..+..++.+... ...+++++|.++...+..++++...
T Consensus 215 vfIDVGAniG~~s~~f~~~~~~---------~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 215 KMVDCGASIGESLAGLIGVTKG---------KFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp EEEEETCTTSHHHHHHHHHHTS---------CCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred EEEECCcCCCHHHHHHHHhcCC---------CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5899999999999888876631 2468999999999999999987654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=1.2 Score=31.67 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=35.7
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
|.=+-.|++.++.+++..+.. .+.+++.++.++..++.+.+.+...+
T Consensus 12 v~lITGas~GIG~aiA~~la~---------~G~~Vv~~~r~~~~l~~~~~~l~~~~ 58 (257)
T d1xg5a_ 12 LALVTGASGGIGAAVARALVQ---------QGLKVVGCARTVGNIEELAAECKSAG 58 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 334455677888888887743 58899999999999999888877554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.30 E-value=0.079 Score=35.56 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=26.9
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|. |.++..++++. +.+.+++|.+++-.+.+++
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~------------Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAM------------GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESSGGGHHHHHH
T ss_pred EEEEeccchHHHHHHHHhhcc------------cccchhhccchhHHHHHhc
Confidence 456666643 45555566554 7888899999988877764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.90 E-value=0.38 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEee
Q psy889 136 DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+....+.|+|+|.+++...
T Consensus 104 ~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 104 KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHhccCCceEeccc
Confidence 4567889999999999998654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.23 E-value=0.23 Score=33.37 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=22.1
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+|+|+... . ...+.++.+.|+++|+++.+
T Consensus 93 ~g~d~v~d~~-----g--~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 93 YGVDVVLNSL-----A--GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CCEEEEEECC-----C--THHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEEEecc-----c--chHHHHHHHHhcCCCEEEEE
Confidence 3467776532 1 34677889999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.87 E-value=0.32 Score=32.11 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=26.4
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|. |..+..++++. +.+++++|.++.-++.+++
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~------------G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAM------------GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeeccccHHHHHHHHHHc------------CCccceecchhhHHHhhhc
Confidence 455566643 33444444443 7899999999999888875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.60 E-value=0.35 Score=32.23 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.4
Q ss_pred eEEeeecCCCc-hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||-+|+|... .+..++++.. ..+++++|.++.-++.+++
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g-----------~~~vv~~~~~~~k~~~~~~ 75 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMT-----------PATVIALDVKEEKLKLAER 75 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-----------CCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHhhc-----------CcccccccchhHHHHHHhh
Confidence 46667776543 3455566553 4678999999988888875
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.48 E-value=0.35 Score=34.78 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=38.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+||.=+-.|++++++.+++.+.+. .+.+++.++.+++-++.+.+.++..+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~--------~g~~Vi~~~r~~~~~~~~~~~l~~~~ 52 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRL--------FSGDVVLTARDVTRGQAAVQQLQAEG 52 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHH--------SSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCHHHHHHHHHHHHh--------CCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 467667778888888888776310 16789999999999998888876543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.39 E-value=1.2 Score=29.26 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=28.4
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=.||| .|.++..++++.. ...++++|.++.-++.+++.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G-----------~~~vi~~~~~~~k~~~ak~l 72 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAG-----------ASRIIGVDINKDKFARAKEF 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHHh-----------cCceEEEcccHHHHHHHHHh
Confidence 45555554 4556666677663 46799999999998888853
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.31 E-value=0.55 Score=31.77 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=25.6
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+|.|+.+..++++. +.+++++..+++-.+.+++.
T Consensus 42 GGVG~~aiQlAk~~------------Ga~Via~~~~~~k~~~~~~l 75 (177)
T d1o89a2 42 GGVGSTAVALLHKL------------GYQVVAVSGRESTHEYLKSL 75 (177)
T ss_dssp SHHHHHHHHHHHHT------------TCCEEEEESCGGGHHHHHHH
T ss_pred ccchHHHHHHHHHc------------CCCeEEEecchhHHHHHHhh
Confidence 34556677777765 89999999999888877643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.00 E-value=0.45 Score=31.98 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=27.0
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=.|+ |.|..+..+++.. +.+++++..+++-.+.+++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~------------Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLK------------GCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHT
T ss_pred EEEEEeCCCchhHHHHHHHHcc------------CCEEEEeCCCHHHHHHHHhh
Confidence 3454443 2456666666655 88999999998887777753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.56 E-value=0.39 Score=30.46 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=29.0
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
||-|.++..+++.+.. .+..++++|.+++.++.++
T Consensus 6 iG~G~~G~~la~~L~~---------~g~~vvvid~d~~~~~~~~ 40 (134)
T d2hmva1 6 IGLGRFGGSIVKELHR---------MGHEVLAVDINEEKVNAYA 40 (134)
T ss_dssp ECCSHHHHHHHHHHHH---------TTCCCEEEESCHHHHHHTT
T ss_pred ECCCHHHHHHHHHHHH---------CCCeEEEecCcHHHHHHHH
Confidence 4678999999988753 4788999999998888775
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=81.19 E-value=0.31 Score=32.76 Aligned_cols=34 Identities=29% Similarity=0.133 Sum_probs=26.1
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.|.|..+..++++. +++++++..+++-.+.+++.
T Consensus 34 GgVG~~avQlAk~~------------Ga~Viat~~s~~k~~~~~~l 67 (167)
T d1tt7a2 34 GGVGGIAVSMLNKR------------GYDVVASTGNREAADYLKQL 67 (167)
T ss_dssp SHHHHHHHHHHHHH------------TCCEEEEESSSSTHHHHHHH
T ss_pred chHHHHHHHHHHHc------------CCceEEEecCHHHHHHHHhh
Confidence 45567777777776 89999999988887777653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.90 E-value=3.1 Score=27.43 Aligned_cols=41 Identities=5% Similarity=-0.185 Sum_probs=28.7
Q ss_pred eEEeeecCCC-chHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=+|||.. ..+..++++.. ..+++++|.++.-++.+++.
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~G-----------~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAAG-----------ASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHT
T ss_pred EEEEECCCchhHHHHHHHHHcC-----------CceeeccCChHHHHHHHHHc
Confidence 5677777654 34444555552 45799999999999999853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.73 E-value=2.3 Score=27.97 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=28.7
Q ss_pred eEEeeecCCC-chHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+||=+|+|.+ ..+..++++.. ..+++++|.++.-.+.+++.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g-----------~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAG-----------AARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHcC-----------CceEEeecCcHHHHHHHHHh
Confidence 5677777544 34444455542 56899999999999988764
|