Psyllid ID: psy893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccEEEEcccccccccEEEEEEcccEEEcccccccccccHHHHccccccccccEEEccccccccccccccccccccEEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccEEEccccEEEEEEcccEEEEEEEccccEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHcccccccEEEEEEEEcccccccccccccccccccccccEEEEccccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccccHHHHHHHHcccHHHHcHHHHHcccEEEccccccccccccccccccccEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccEEEcccccccccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccEEEEcccEEEEEEEccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHEEEEEccccHHHHHHHccccccEEcccccHHHHHHccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
EAGHNGLVSAAYLARAGLSVAVLERRHvlggaavteeiipgfQFSRASYLLSLLRPHIYKDLELKKHGlklltrdprsytplspdkwtnkaksltlgldpqknyEQIARFSVKdaqnfekyDHHIEEITNLldplfdiaphdfgnLLMYNLFTRRGEMKDVYSLLTCSAFSILndwfeseplkatlltdgligamvsphspstSYVLLHHVmggaegvkgawaypeggmgAVSQALARSAQASGAQLFTSQTVTeitldsdkrasgvvtngLEIKAKYVLSNTTAkctlldlipkgnlderttQAVQSIDYASPVTKINVALKSipnfladpnpsentvqphhhgsihlnCEDMQQVFDAYQdatqgipstrpmiemvlpssldntlsppghhvcllftqftpyklagdrdwteedkanyatNVFSSIeqycpgftqdivgyeiltppdlekefgltggniFHGALSLNQllfnrplpiqgpsspftliphlllcgsgahpgggvcgapgYIAAQMVNRLMRK
Flexible Loop (DISEMBL)
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAavteeiipgFQFSRASYLLSLLRPHIYKDLELKkhglklltrdprsytplspdkwtnkAKSLtlgldpqknYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFtsqtvteitldsdkrasgvvtngleIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Low Complexity Region (SEG)
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Disordered region (IsUnstruct)
******LVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTR*******************LTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ***********QLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFL****************SIHLNCEDMQQVFDAYQDAT*********IEMVL*******LSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMV******
Disordered Region (DISOPRED)
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Disordered Region (DISEMBL)
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ**********AQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNP**********GSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Disordered Region (DISPRO)
**GHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q3MHH6	581	Pyridine nucleotide-disul	yes	N/A	0.992	0.893	0.533	1e-156
Q8N2H3	581	Pyridine nucleotide-disul	yes	N/A	0.990	0.891	0.532	1e-155
Q68FT3	581	Pyridine nucleotide-disul	yes	N/A	0.992	0.893	0.524	1e-154
Q5RAP5	581	Pyridine nucleotide-disul	yes	N/A	0.990	0.891	0.521	1e-154
Q3U4I7	580	Pyridine nucleotide-disul	yes	N/A	0.990	0.893	0.514	1e-150
P64752	535	Uncharacterized protein M	yes	N/A	0.904	0.884	0.295	2e-37
P64751	535	Uncharacterized protein R	yes	N/A	0.904	0.884	0.295	2e-37
P06108	469	Protein p49 OS=Streptomyc	N/A	N/A	0.860	0.959	0.251	5e-18
P21685	492	Phytoene desaturase (lyco	yes	N/A	0.856	0.910	0.222	7e-13
P22871	492	Phytoene desaturase (lyco	N/A	N/A	0.860	0.914	0.226	7e-12

>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1

 Score =  551 bits (1420), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/540 (53%), Positives = 366/540 (67%), Gaps = 21/540 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERRHV+GGAAVTEEI+PGF+FSRASYLLSLLRP IY +
Sbjct: 42  AGHNGLVAAAYLQRFGVNTAVFERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPQIYSE 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGL+L  R+P S+TP+  +    K  +SL LG D  +N +QIA+FS KDAQ F K
Sbjct: 102 LELKKHGLRLHLRNPYSFTPMLEEGTGGKVPRSLLLGTDMVENQKQIAQFSKKDAQAFPK 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDF-----GNLL--MYNLFTRR----------GEMKDVYS 163
           Y+  ++ +   +DPL D AP D      G+LL  + +L T +           ++   Y 
Sbjct: 162 YEAFMDRLALAIDPLLDSAPVDLEAFQRGSLLQRLKSLSTLKPLWQAGCILGAQLPQYYQ 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT  A  +L+ WFESEPLKATL TD +IGAM +P+ P + YVLLHHVMG  EGV+GAW 
Sbjct: 222 VLTAPAAKVLDQWFESEPLKATLATDAVIGAMTNPYIPGSGYVLLHHVMGSLEGVRGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA A G  +FT +TV ++ + S  R  GVV  +G E+++K VLSN
Sbjct: 282 YVQGGMGALSDAIASSATAHGVSIFTEKTVAKVQVSSGGRVQGVVLQDGSEVRSKVVLSN 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L L P+  L E     +  +D  SPVTKINVA+  +P+FLA PN   +   PH
Sbjct: 342 ASPQITFLKLTPQEWLPEEFVARIAQLDTKSPVTKINVAVNRLPDFLAAPNTPGDQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   V  A++D   G+PS RP+IE+ +PSSLD TL+PPG HV  LFTQ+T
Sbjct: 402 HQCSIHLNCEDTLLVHQAFEDTLDGLPSKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E+ +  YA  VF  IE Y PGF   +VG +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYTLAGGKAWDEQQRNTYADRVFDCIEAYAPGFKGSVVGRDILTPPDLERVFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 522
           H A+SL+QL F RP+P+   SS  + +  L LCGSGAHPGGGV GA G  AA +V R +R
Sbjct: 522 HCAMSLDQLYFARPVPLH--SSYCSPLRGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLR 579

Probable oxidoreductase.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2

 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/541 (53%), Positives = 366/541 (67%), Gaps = 23/541 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERRHV+GGAAVTEEIIPGF+FSRASYLLSLLRP IY D
Sbjct: 42  AGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGL+L  R+P S+TP+  +   +K  + L LG D  +N +QIA+FS KDAQ F K
Sbjct: 102 LELKKHGLRLHLRNPYSFTPMLEEGAGSKVPRCLLLGTDMAENQKQIAQFSQKDAQVFPK 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDF-----GNLL--MYNLFTRR----------GEMKDVYS 163
           Y+  +  +   +DPL D AP D      G+LL  M +L T +           ++   Y 
Sbjct: 162 YEEFMHRLALAIDPLLDAAPVDMAAFQHGSLLQRMRSLSTLKPLLKAGRILGAQLPRYYE 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMGG EG++GAW 
Sbjct: 222 VLTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+    GVV  +G E+++K VLSN
Sbjct: 282 YVQGGMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKMVLSN 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
           T+ + T L L P+  L E   + +  +D  SPVTKINVA+  +P+FLA PN       PH
Sbjct: 342 TSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   +  A++DA  G+PS RP+IE+ +PSSLD TL+PPG HV  LFTQ+ 
Sbjct: 402 HQCSIHLNCEDTLLLHQAFEDAMDGLPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQYM 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E+++  YA  VF  IE Y PGF   +VG +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYTLAGGKAWDEQERDAYADRVFDCIEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQ-GPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521
           H A+SL+QL F RP+P+  G   P      L LCGSGAHPGGGV GA G  AA +  R +
Sbjct: 522 HCAMSLDQLYFARPVPLHSGYRCPLQ---GLYLCGSGAHPGGGVMGAAGRNAAHVAFRDL 578

Query: 522 R 522
           +
Sbjct: 579 K 579

Probable oxidoreductase.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1

 Score =  546 bits (1408), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/540 (52%), Positives = 362/540 (67%), Gaps = 21/540 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERRHV+GGAAVTEEIIPGF+FSRASYLLSLLRP IY D
Sbjct: 42  AGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLKL  R+P S+TP+  +   +K  +SL LG D  +N +QI++FS KDAQ F +
Sbjct: 102 LELKKHGLKLHLRNPYSFTPMLEEGTLSKPPRSLLLGTDVAENQKQISQFSRKDAQAFPR 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR-----------------GEMKDVYS 163
           Y+  ++ +   +DPL D AP D   L   +L  R                   ++   Y 
Sbjct: 162 YEEFMKRLVLAIDPLLDAAPVDIAALQHGSLLQRLRALSTLRPLLKAGRTLGAQLPQYYE 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMG  EG++GAW+
Sbjct: 222 VLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGMQGAWS 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA A GA +FT +TV ++ ++S+ R  GVV   G E++++ VLS 
Sbjct: 282 YVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEGRVQGVVLQGGEEVRSRVVLSC 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L+L P+  L     + +  +D  SPVTKINVA+  +PNF A PN   +  Q H
Sbjct: 342 ASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQAH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   +  A++DA  G+PS RPMIE+ +PSSLD TL+P G HV  LFTQ+T
Sbjct: 402 HQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAPTGCHVVSLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E+ K  YA  VF  IE Y PGF + ++G +ILTP DLE+ FGL GGNIF
Sbjct: 462 PYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERIFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 522
           HGA+SL+QL F RP+P    S     +  L LCGSGAHPGGGV GA G  AA +V R ++
Sbjct: 522 HGAMSLDQLYFARPVPQH--SDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHIVFRDLK 579

Probable oxidoreductase.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/541 (52%), Positives = 359/541 (66%), Gaps = 23/541 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV AAYL R G++ AV ERRHV+GGAAVTEEIIPGF+FSRASYLLSLLRP IY D
Sbjct: 42  AGHNGLVVAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGL+L  R+P S+TP+  +   +K  +SL LG D  +N +QIA+FS KDAQ F +
Sbjct: 102 LELKKHGLRLHLRNPYSFTPMLEEGAGSKVPRSLLLGTDMAENQKQIAQFSRKDAQVFPR 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR-----------------GEMKDVYS 163
           Y+  +  +   +DPL D AP D       +L  R                   ++   Y 
Sbjct: 162 YEEFMHRLALAIDPLLDAAPVDMAAFQRGSLLQRMRSFSTLKPLLKAGRILGAQLPRYYE 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMGG EG++GAW 
Sbjct: 222 VLTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+    GVV  +G E+++K VLSN
Sbjct: 282 YVQGGMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKVVLSN 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
           T+ + T L L P+  L E   + +  +D  SPVTKINVA+  +P+FLA PN       PH
Sbjct: 342 TSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   +  A++DA  G+PS RP+IE+ +PSSLD  L+P G HV  LFTQ+T
Sbjct: 402 HQCSIHLNCEDTLLLHQAFEDAMDGLPSHRPIIELCIPSSLDPPLAPSGCHVVSLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E+++  YA  VF  +E Y PGF   +VG +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYTLAGGKAWDEQERDAYADRVFDCVEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQ-GPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521
           H A+SL+QL F RP+P+  G   P      L LCGSGAHPGGGV GA G  AA +  R +
Sbjct: 522 HCAMSLDQLYFARPVPLHSGYRCPLQ---GLYLCGSGAHPGGGVMGAAGRNAAHVAFRDL 578

Query: 522 R 522
           +
Sbjct: 579 K 579

Probable oxidoreductase.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2

 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/540 (51%), Positives = 359/540 (66%), Gaps = 22/540 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERRHV+GGAAVTEEIIPGF+FSRASYLLSLLRP I  D
Sbjct: 42  AGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQICTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNK-AKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLKL  RDP S+TP+  +   N+  +SL LG D   N ++I++FS KDAQ F +
Sbjct: 102 LELKKHGLKLHLRDPYSFTPMLEEGTLNRLPRSLLLGTDMAANQKEISQFSRKDAQAFPR 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLT------------CS 168
            +  ++ +   +DPL D AP D       +L  R G +  +  LL             C 
Sbjct: 162 -EEFMKRLVLAIDPLLDAAPVDTTAFHHGSLLQRLGALSTLKPLLKAGRTLGAQLPQYCE 220

Query: 169 AFS-----ILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
             +     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMG  EG +GAW+
Sbjct: 221 VLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGTQGAWS 280

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+ R  GV + +G E++++ VLS 
Sbjct: 281 YVQGGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRVQGVTLQDGEEVRSRVVLSC 340

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L+L P+  L     + +  +D  SPVTKINVA+  +PNF A PN   +  Q H
Sbjct: 341 ASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQGH 400

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   +  A++DA  G+PS +PMIE+ +PSSLD TL+PPG HV  LFTQ+T
Sbjct: 401 HQCSIHLNCEDTLLLHQAFEDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLFTQYT 460

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E++K  YA  VF  IE Y PGF + ++  +ILTPPDLE+ F L GGNIF
Sbjct: 461 PYTLAGGKVWNEQEKNTYADKVFDCIEAYAPGFKRSVLARDILTPPDLERIFRLPGGNIF 520

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 522
           HGA+SL+QL F RP+P    S     +  L LCGSGAHPGGGV GA G  AA +V R ++
Sbjct: 521 HGAMSLDQLYFARPVPQH--SDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLK 578

Probable oxidoreductase.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P64752|Y921_MYCBO Uncharacterized protein Mb0921c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0921c PE=4 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 237/549 (43%), Gaps = 76/549 (13%)

Query: 4   HNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ--FSRASYLLSLLRPHIYKD 61
           HNGLV+AAYLARAGL V +LER    GGAAV+ +   G +   SR SYL+SLL   I  D
Sbjct: 17  HNGLVAAAYLARAGLRVRLLERLAQTGGAAVSIQAFDGVEVALSRYSYLVSLLPSRIVAD 76

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQ-KNYEQIARFSVKDAQNFEK 120
           L      ++L  R   SYTP      T     L +G   + +     A  +  DA  F  
Sbjct: 77  LGAP---VRLARRPFSSYTPAPA---TAGRSGLLIGPTGEPRAAHLAAIGAAPDAHGFAA 130

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSL---LTCSAFSILND-- 175
           +      +T  L P            L+  L TR    +D+         +A+  + D  
Sbjct: 131 FYRRCRLVTARLWP-----------TLIEPLRTREQARRDIVEYGGHEAAAAWQAMVDEP 179

Query: 176 -------WFESEPLKATLLTDGLIGAMVSPHSPS--TSYVLLHHVMGGAEGVKGAWAYPE 226
                     ++ L+  + TD LIG     H PS   +   L+H++GG  GV   W  P 
Sbjct: 180 IGHAIAGAVANDLLRGVIATDALIGTFARMHEPSLMQNICFLYHLVGGGTGV---WHVPI 236

Query: 227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLE--IKAKYVLSNTT 284
           GGMG+V+ ALA +A   GA++ T   V  +  D   R     ++G E  ++ ++VL   T
Sbjct: 237 GGMGSVTSALATAAARHGAEIVTGADVFALDPDGTVRYHSDGSDGAEHLVRGRFVLVGVT 296

Query: 285 AKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHH 344
               L  L+          + V ++   + V K+N+ ++ +P    D      T Q    
Sbjct: 297 -PAVLASLL---------GEPVAALAPGAQV-KVNMVVRRLPRLRDD----SVTPQQAFA 341

Query: 345 GSIHLNCEDMQQVFDAYQDATQG-----IPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFT 399
           G+ H+N E   Q+  AY  A  G     +P       +  PS L   L   G     +F 
Sbjct: 342 GTFHVN-ETWSQLDAAYSQAASGRLPDPLPCEAYCHSLTDPSILSARLRDAGAQTLTVFG 400

Query: 400 QFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPP--------DLE 451
             TP+ + GD   TE         V +S+        QD++  +  + P        DL+
Sbjct: 401 LHTPHSVFGD---TEGLAERLTAAVLASLNSVLAEPIQDVLWTDAQSKPCIETTTTLDLQ 457

Query: 452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI---PHLLLCGSGAHPGGGVCGA 508
           +  G+TGGNIFHGALS      +   P+  P+  + +      ++LCGSGA  GG V G 
Sbjct: 458 RTLGMTGGNIFHGALSWP--FADNDDPLDTPARQWGVATDHERIMLCGSGARRGGAVSGI 515

Query: 509 PGYIAAQMV 517
            G+ AA  V
Sbjct: 516 GGHNAAMAV 524

Mycobacterium bovis (taxid: 1765)

>sp|P64751|Y897_MYCTU Uncharacterized protein Rv0897c/MT0921 OS=Mycobacterium tuberculosis GN=Rv0897c PE=4 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 162/549 (29%), Positives = 237/549 (43%), Gaps = 76/549 (13%)

Query: 4   HNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ--FSRASYLLSLLRPHIYKD 61
           HNGLV+AAYLARAGL V +LER    GGAAV+ +   G +   SR SYL+SLL   I  D
Sbjct: 17  HNGLVAAAYLARAGLRVRLLERLAQTGGAAVSIQAFDGVEVALSRYSYLVSLLPSRIVAD 76

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQ-KNYEQIARFSVKDAQNFEK 120
           L      ++L  R   SYTP      T     L +G   + +     A  +  DA  F  
Sbjct: 77  LGAP---VRLARRPFSSYTPAPA---TAGRSGLLIGPTGEPRAAHLAAIGAAPDAHGFAA 130

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSL---LTCSAFSILND-- 175
           +      +T  L P            L+  L TR    +D+         +A+  + D  
Sbjct: 131 FYRRCRLVTARLWP-----------TLIEPLRTREQARRDIVEYGGHEAAAAWQAMVDEP 179

Query: 176 -------WFESEPLKATLLTDGLIGAMVSPHSPS--TSYVLLHHVMGGAEGVKGAWAYPE 226
                     ++ L+  + TD LIG     H PS   +   L+H++GG  GV   W  P 
Sbjct: 180 IGHAIAGAVANDLLRGVIATDALIGTFARMHEPSLMQNICFLYHLVGGGTGV---WHVPI 236

Query: 227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLE--IKAKYVLSNTT 284
           GGMG+V+ ALA +A   GA++ T   V  +  D   R     ++G E  ++ ++VL   T
Sbjct: 237 GGMGSVTSALATAAARHGAEIVTGADVFALDPDGTVRYHSDGSDGAEHLVRGRFVLVGVT 296

Query: 285 AKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHH 344
               L  L+          + V ++   + V K+N+ ++ +P    D      T Q    
Sbjct: 297 -PAVLASLL---------GEPVAALAPGAQV-KVNMVVRRLPRLRDD----SVTPQQAFA 341

Query: 345 GSIHLNCEDMQQVFDAYQDATQG-----IPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFT 399
           G+ H+N E   Q+  AY  A  G     +P       +  PS L   L   G     +F 
Sbjct: 342 GTFHVN-ETWSQLDAAYSQAASGRLPDPLPCEAYCHSLTDPSILSARLRDAGAQTLTVFG 400

Query: 400 QFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPP--------DLE 451
             TP+ + GD   TE         V +S+        QD++  +  + P        DL+
Sbjct: 401 LHTPHSVFGD---TEGLAERLTAAVLASLNSVLAEPIQDVLWTDAQSKPCIETTTTLDLQ 457

Query: 452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI---PHLLLCGSGAHPGGGVCGA 508
           +  G+TGGNIFHGALS      +   P+  P+  + +      ++LCGSGA  GG V G 
Sbjct: 458 RTLGMTGGNIFHGALSWP--FADNDDPLDTPARQWGVATDHERIMLCGSGARRGGAVSGI 515

Query: 509 PGYIAAQMV 517
            G+ AA  V
Sbjct: 516 GGHNAAMAV 524

Mycobacterium tuberculosis (taxid: 1773)

>sp|P06108|P49_STRLI Protein p49 OS=Streptomyces lividans GN=p49 PE=4 SV=1

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 207/532 (38%), Gaps = 82/532 (15%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-IPGFQFS--RASYLLSLLRPHI 58
           AG NGL +A  LAR G  VAV E +  +GG A TEE+ +PGF+     A++ L +  P  
Sbjct: 9   AGPNGLTAAVELARRGFPVAVFEAQGTVGGGARTEELTLPGFRHDPCSAAHPLGINSP-A 67

Query: 59  YKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
           ++ L L+++GL+ L        P  PD  +    S ++G       E  A F  +DA  +
Sbjct: 68  FRGLPLERYGLEWLHPGLPMAHPF-PDG-SAAVLSRSVG-------ETAASFGARDAGPY 118

Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
            +    IE       P +D    DF +L +  L  R       + L+     + L   F 
Sbjct: 119 RRL---IERFL----PRWDTLARDFMSLPLTAL-PRDPVTLARFGLVGLPPSTWLMRRFR 170

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTS------YVLLHHVMGGAEGVKGAWAYPEGGMGAV 232
            E  KA  L  GL+  +++P     +      + L  H  G        W    GG  ++
Sbjct: 171 DE--KAKTLFAGLVAHVMAPLGGFATGAIGLVFALAAHARG--------WPVARGGSQSI 220

Query: 233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDL 292
           S AL    +  G  + T   V  +      RA             YVL  +      +  
Sbjct: 221 SDALTAYLKDLGGAVHTDYEVKRLDDLPPARA-------------YVLDTSPTALARIAG 267

Query: 293 IPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCE 352
           +     + R   +V  IDYA                L  P P     +P   G++ +  +
Sbjct: 268 LGSHYANYRYGPSVFKIDYA----------------LDGPVP-WTAEEPRSAGTVQIGAD 310

Query: 353 DMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDW 412
             +     +  +       RP +  V PS  D T +P G HV   +    P    GD   
Sbjct: 311 STEIGAALHAPSGTDRAPERPFLITVQPSVADPTRAPAGKHVFWAYGH-VPNGWNGDLTD 369

Query: 413 TEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDL-EKEFGLTGGNIFHGALSLNQL 471
             E +          +E++ PGF   ++      P +L  +     GG+I  GA+S  QL
Sbjct: 370 AMERQ----------LERFAPGFRDRVLARATAGPAELAARNANYVGGDISSGAVSGLQL 419

Query: 472 LFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK 523
           L    + +   S+P    P + +C S   PG GV G  G+ AA+ V R +R+
Sbjct: 420 LLRPKISLFPYSTPH---PAVFICSSATPPGPGVHGMSGHNAAKAVWRRLRQ 468

Streptomyces lividans (taxid: 1916)

>sp|P21685|CRTI_PANAN Phytoene desaturase (lycopene-forming) OS=Pantoea ananas GN=crtI PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 118/531 (22%), Positives = 199/531 (37%), Gaps = 83/531 (15%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL  A  L  AG+ V +LE+R   GG A   E   GF F           P +  D
Sbjct: 9   AGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED-QGFTFDAG--------PTVITD 59

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDK------WTNKAKSLTLGLDPQKNYEQIARFSVKDA 115
               +    L  +  + Y  L P        W +  K      D  +   QI +F+ +D 
Sbjct: 60  PSAIEELFALAGKQLKEYVELLPVTPFYRLCWES-GKVFNYDNDQTRLEAQIQQFNPRDV 118

Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSA----FS 171
           + + ++          LD    +    +  L      + R  ++    L    A    +S
Sbjct: 119 EGYRQF----------LDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYS 168

Query: 172 ILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
            +  + E E L+        L+G   +P + S+ Y L+H +    E   G W +P GG G
Sbjct: 169 KVASYIEDEHLRQAFSFHSLLVGG--NPFATSSIYTLIHAL----EREWGVW-FPRGGTG 221

Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL 290
           A+ Q + +  Q  G ++  +  V+ +    +K  +  + +G     + V SN     T  
Sbjct: 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYR 281

Query: 291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSI--H 348
           DL+ +     + +  +Q+   ++ +  +   L                   HHH  +  H
Sbjct: 282 DLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLN------------------HHHDQLAHH 323

Query: 349 LNC------EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
             C      E + ++F+       G+     +  +  P   D++L+P G   C  +    
Sbjct: 324 TVCFGPRYRELIDEIFN-----HDGLAEDFSLY-LHAPCVTDSSLAPEG---CGSYYVLA 374

Query: 403 PYKLAG--DRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGG 459
           P    G  + DWT E        +F+ +EQ Y PG    +V + + TP D   +     G
Sbjct: 375 PVPHLGTANLDWTVEGP-KLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHG 433

Query: 460 NIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG 510
           + F     L Q  + RP       +    I +L L G+G HPG G+ G  G
Sbjct: 434 SAFSVEPVLTQSAWFRP------HNRDKTITNLYLVGAGTHPGAGIPGVIG 478

This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds.

Pantoea ananas (taxid: 553)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P22871|CRTI_ESCVU Phytoene desaturase (lycopene-forming) OS=Escherichia vulneris GN=crtI PE=3 SV=1

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 199/534 (37%), Gaps = 84/534 (15%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL  A  L  AG+   +LE+R   GG A       GF F           P +  D
Sbjct: 9   AGFGGLALAIRLQAAGIPTVLLEQRDKPGGRAYVWHD-QGFTFDAG--------PTVITD 59

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDK------WTNKAKSLTLGLDPQKNYEQIARFSVKDA 115
               +    L  R    Y  L P K      W    K+L    D  +   QI +F+ +D 
Sbjct: 60  PTALEALFTLAGRRMEDYVRLLPVKPFYRLCW-ESGKTLDYANDSAELEAQITQFNPRDV 118

Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTC----SAFS 171
           + + ++  + + +              +  L      + R  ++    LL      S + 
Sbjct: 119 EGYRRFLAYSQAVFQ----------EGYLRLGSVPFLSFRDMLRAGPQLLKLQAWQSVYQ 168

Query: 172 ILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
            ++ + E E L+        L+G   +P + S+ Y L+H +    E   G W +PEGG G
Sbjct: 169 SVSRFIEDEHLRQAFSFHSLLVGG--NPFTTSSIYTLIHAL----EREWGVW-FPEGGTG 221

Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKYVLSNTTAKCTL 289
           A+   + +     G ++  +  V E+ + +D R S V + +G       V SN     T 
Sbjct: 222 ALVNGMVKLFTDLGGEIELNARVEELVV-ADNRVSQVRLADGRIFDTDAVASNADVVNTY 280

Query: 290 LDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHL 349
             L+    + ++   A++    ++ +  +   L                 QPH   + H 
Sbjct: 281 KKLLGHHPVGQKRAAALERKSMSNSLFVLYFGLN----------------QPHSQLAHHT 324

Query: 350 NC------EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTP 403
            C      E + ++F      T    +    + +  P   D +L+PPG   C  F    P
Sbjct: 325 ICFGPRYRELIDEIF------TGSALADDFSLYLHSPCVTDPSLAPPG---CASFYVLAP 375

Query: 404 YKLAGDR--DWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGGN 460
               G+   DW +E        +F  +E+ Y PG    +V   I TP D         G+
Sbjct: 376 VPHLGNAPLDWAQEGP-KLRDRIFDYLEERYMPGLRSQLVTQRIFTPADFHDTLDAHLGS 434

Query: 461 IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAA 514
            F     L Q  + RP       +  + I +L L G+G HPG G+   PG +A+
Sbjct: 435 AFSIEPLLTQSAWFRP------HNRDSDIANLYLVGAGTHPGAGI---PGVVAS 479

This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds.

Escherichia vulneris (taxid: 566)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
443684431	591	hypothetical protein CAPTEDRAFT_153668 [	0.992	0.878	0.538	1e-159
443693037	593	hypothetical protein CAPTEDRAFT_178680 [	0.980	0.865	0.543	1e-159
327267432	729	PREDICTED: pyridine nucleotide-disulfide	0.977	0.700	0.541	1e-158
395501778	581	PREDICTED: pyridine nucleotide-disulfide	0.978	0.881	0.536	1e-157
351713645	581	Pyridine nucleotide-disulfide oxidoreduc	0.990	0.891	0.526	1e-156
213514352	577	Probable oxidoreductase C10orf33 [Salmo	0.973	0.882	0.544	1e-156
301763186	581	PREDICTED: pyridine nucleotide-disulfide	0.992	0.893	0.529	1e-155
147904744	574	pyridine nucleotide-disulphide oxidoredu	0.977	0.890	0.538	1e-155
334313954	624	PREDICTED: LOW QUALITY PROTEIN: pyridine	0.980	0.822	0.524	1e-155
118092902	593	PREDICTED: pyridine nucleotide-disulfide	0.990	0.873	0.534	1e-155

>gi|443684431|gb|ELT88359.1| hypothetical protein CAPTEDRAFT_153668 [Capitella teleta]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/542 (53%), Positives = 372/542 (68%), Gaps = 23/542 (4%)

Query: 3   GHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDL 62
           GHNGLV+AAYL +AG SV VLERRHVLGGAAVTEEI+PGF+FSRASYLLSLLRP ++ DL
Sbjct: 52  GHNGLVAAAYLQKAGRSVCVLERRHVLGGAAVTEEIVPGFKFSRASYLLSLLRPQVFNDL 111

Query: 63  ELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
           ELKKHGLK+  R P SYTPL      +K  +SL LG   +++ EQIA+FS +DA+ F  Y
Sbjct: 112 ELKKHGLKVYLRKPNSYTPLLGRTPKDKGPRSLLLGQSEKEDAEQIAQFSKQDAKAFSVY 171

Query: 122 DHHIEEITNLLDPLFDIAP---------HDFGNLLMYNLFTRRG----------EMKDVY 162
           +  +  + + LDPL D  P         H   + +  N    +           +    Y
Sbjct: 172 ERSLNRMVDALDPLLDNKPLHIPSWAGKHASVSSMGRNWSAAKALLNSGRLLGPDAMSFY 231

Query: 163 SLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAW 222
             ++ SA  IL+ WFESEPLKATL TD +IGAM+SP    + Y+LLHHVMG  +GVKGAW
Sbjct: 232 EFMSASAAKILDKWFESEPLKATLATDSVIGAMLSPKMAGSGYILLHHVMGEVDGVKGAW 291

Query: 223 AYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLS 281
           AY EGGMG VS A+ARSA++ GAQLF  + V+ ++ DS   A+GVV  +G +I++K VLS
Sbjct: 292 AYVEGGMGGVSDAIARSAKSHGAQLFVGKPVSHVSTDSQGNANGVVLEDGTQIRSKAVLS 351

Query: 282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQP 341
           N TAK T  +L+ K +L E   + VQ+IDYASPVTKINVA+ S+PNFLADPN S+    P
Sbjct: 352 NATAKVTFTNLVDKSHLSEDFLKEVQAIDYASPVTKINVAVSSLPNFLADPNRSDGKPSP 411

Query: 342 HHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQF 401
           HH  +IHLNCE  + + DAY +A +G  S +P+IEM +PS++D T++P G HV  LFTQ+
Sbjct: 412 HHQTTIHLNCEHSELIHDAYVEAQRGGYSNKPVIEMTIPSAVDPTIAPQGSHVVQLFTQY 471

Query: 402 TPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI 461
           TPY LA ++ WTEE K  YA  VF+ IEQY PGF   ++G +ILTPPDLE+ FGLTGGNI
Sbjct: 472 TPYTLADNQPWTEEAKEAYANTVFNCIEQYAPGFKASVIGKDILTPPDLERIFGLTGGNI 531

Query: 462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521
           FHG++SL+QL F RP P    S+  + +P L LCGSG HPGGGV G+ G +AAQ V    
Sbjct: 532 FHGSVSLDQLYFARPTPAY--SNYRSPLPGLYLCGSGTHPGGGVMGSAGRLAAQAVIEDW 589

Query: 522 RK 523
           +K
Sbjct: 590 KK 591

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443693037|gb|ELT94497.1| hypothetical protein CAPTEDRAFT_178680 [Capitella teleta]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/535 (54%), Positives = 366/535 (68%), Gaps = 22/535 (4%)

Query: 3   GHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDL 62
           GHNGLV+AAYL +AG SV VLERRHVLGGAAVTEE +PGF+FSRASYLLSLLRP ++ DL
Sbjct: 51  GHNGLVAAAYLQKAGRSVCVLERRHVLGGAAVTEEKVPGFKFSRASYLLSLLRPQVFNDL 110

Query: 63  ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYD 122
           ELKKHGLK+  R P SYTPL         KSL LG   +++ EQIA+FS +DA+ F  Y+
Sbjct: 111 ELKKHGLKVYLRKPNSYTPLLGRLRDRGPKSLLLGQSEKEDAEQIAQFSKQDAKAFSVYE 170

Query: 123 HHIEEITNLLDPLFDIAP---------HDFGNLLMYNLFTRR----------GEMKDVYS 163
             +  + + LDPL D  P         H   + +  N    +           +    Y 
Sbjct: 171 RSLNRMVDALDPLLDNKPLHIPSWAGKHASVSSMGRNWSAAKTLLNSGRLLGSDAMSFYE 230

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
            ++  A  IL+ WFESEPLKATL TD +IGAM+SP    + Y+LLHHVMG  +GVKGAWA
Sbjct: 231 FMSAPAAKILDKWFESEPLKATLATDSVIGAMLSPKMAGSGYILLHHVMGEVDGVKGAWA 290

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y EGGMG VS A+ARSA++ GAQLF S+ V+ ++ DS   A+GVV  +G  I+ K VLSN
Sbjct: 291 YVEGGMGGVSDAVARSAKSHGAQLFVSKPVSHVSTDSQGNANGVVLEDGTHIRCKAVLSN 350

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            TAK T  +L+ K +L E   + VQ+IDYASPVTKINVA+ S+PNFLADPN S+    PH
Sbjct: 351 ATAKVTFTNLVDKSHLSEDFLKEVQAIDYASPVTKINVAVSSLPNFLADPNRSDGKPSPH 410

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  +IHLNCE  + + DAY +A +G  S +P+IEM +PS++D T++P G HV  LFTQ+T
Sbjct: 411 HQTTIHLNCEHSELIHDAYVEAQRGGYSNKPVIEMTIPSAVDPTIAPQGSHVVQLFTQYT 470

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG++ WTEE K  YA  VF+ IEQY PGF   ++G +ILTPPDLE+ FGLTGGNIF
Sbjct: 471 PYTLAGNQPWTEETKEAYANTVFNCIEQYAPGFKASVIGKDILTPPDLERIFGLTGGNIF 530

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMV 517
           HG++SL+QL F RP P    S+  + +P L LCGSG HPGGGV G+ G +AAQ V
Sbjct: 531 HGSVSLDQLYFARPTPAY--SNYRSPLPGLYLCGSGTHPGGGVMGSAGRLAAQTV 583

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|327267432|ref|XP_003218506.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Anolis carolinensis]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/534 (54%), Positives = 363/534 (67%), Gaps = 23/534 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL + GL  AVLERRH++GGAAVTEEIIPGF FSRASYLLSLLRP IY++
Sbjct: 45  AGHNGLVAAAYLQKGGLKTAVLERRHIVGGAAVTEEIIPGFHFSRASYLLSLLRPQIYEE 104

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELK+HGL++L RDP S+TPL  D    +  +SL LG +  +  +QIA+FS KDAQ F K
Sbjct: 105 LELKRHGLQVLPRDPYSFTPLLEDGQGGRPPRSLLLGNNMAETQKQIAQFSAKDAQAFPK 164

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDV-----------------YS 163
           Y+  +  + + +DPL D  P D   L   +LF R   ++ +                 Y 
Sbjct: 165 YEAFMSRLVSAIDPLLDTCPVDVAVLSQGSLFQRLKALQGLRTLIHAGFILGKDLPQYYE 224

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT     IL+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMG  EG +GAW 
Sbjct: 225 VLTAPISKILDFWFESEPLKATLATDAVIGAMASPHTPGSGYVLLHHVMGQIEGWQGAWG 284

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKYVLSN 282
           Y  GGMGA+SQALAR+A   GA++FT + V +I   SD +  GV + +G E+K++ VLSN
Sbjct: 285 YVTGGMGALSQALARAATELGAEIFTEKKVAQILQSSDGKVRGVCLKDGTEVKSRLVLSN 344

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L+L P+  L     Q +   D  SPVTKINVA+  +PNFLA PN S+    PH
Sbjct: 345 ASPQLTFLELTPQDFLPAEFVQRISQFDTRSPVTKINVAVDRLPNFLAAPNSSDGRPSPH 404

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED+Q V  A++DA QG PS RPMIE+ +PS+LD TL+P G HV  LFTQ+T
Sbjct: 405 HQSSIHLNCEDIQTVHQAFEDACQGRPSCRPMIELCIPSALDPTLAPQGCHVVSLFTQYT 464

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W +++  +YA  VF  IE Y PGF   ++G ++LTPPDLE+ FGL GGNIF
Sbjct: 465 PYTLAGGKQWDQQESDDYADQVFDCIEAYAPGFKASVIGRDVLTPPDLERIFGLPGGNIF 524

Query: 463 HGALSLNQLLFNRPLP-IQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQ 515
           HGA+SL+QL F RP+P   G  SP   +  L LCGSGAHPGGGV GAPG  AA+
Sbjct: 525 HGAMSLDQLYFARPVPSYSGYRSP---VQGLYLCGSGAHPGGGVMGAPGRNAAR 575

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395501778|ref|XP_003755267.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Sarcophilus harrisii]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/535 (53%), Positives = 372/535 (69%), Gaps = 23/535 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGL++AAYL + G++ AVLERRH++GGAAVTEE+IPGF+FSRASYLLSLLRP IYKD
Sbjct: 42  AGHNGLIAAAYLQKLGVNTAVLERRHLIGGAAVTEELIPGFKFSRASYLLSLLRPQIYKD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNK-AKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLK+  R+P S+TP+  +    K  +SL LG D  +  +QIA+FS KDAQ F K
Sbjct: 102 LELKKHGLKVYLRNPYSFTPMLEEGIQGKLPRSLLLGTDMAETQQQIAQFSPKDAQAFPK 161

Query: 121 YDHHIEEITNLLDPLFDIAPHD---FGNLLMYN----LFTRR----------GEMKDVYS 163
           Y+  +  +   +DPL D +P D   F +  +Y     LFT +           ++   Y 
Sbjct: 162 YEMFMNRLAAAIDPLLDSSPVDTTAFQDRSLYQRLKALFTLKPLLQAGLILGTQLPQYYQ 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           ++T     +L++WFESEPLKATL TD +IGAM SP++P + YVLLHHVMGG EG KGAW 
Sbjct: 222 VITGPITKVLDEWFESEPLKATLATDAVIGAMTSPYTPGSGYVLLHHVMGGLEGKKGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y EGGMGA+S A+A++A+A GA +FT + V ++ ++S ++  GVV  +G E+++K VLSN
Sbjct: 282 YVEGGMGALSHAIAKAAEAHGANIFTEKPVDKVQVNSSRQVQGVVLKDGTEVRSKLVLSN 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L L P+  L E   + +  +D  SPVTKINVA+  +PNFLA PN       PH
Sbjct: 342 ASPQITFLKLAPQEQLPEEFIKRISQLDTQSPVTKINVAVDKLPNFLAAPNVISGQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED Q +  A++DA +GIPS RPMIE+ +PSSLD TL+PPG HV  LFTQ+T
Sbjct: 402 HQCSIHLNCEDTQVLHQAFEDAIKGIPSRRPMIELCIPSSLDPTLAPPGCHVISLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY + G + W E+++  YA  VF  IE Y PGF + ++G +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYTMTGGKVWDEQERNMYADRVFDCIEAYAPGFKKSVIGRDILTPPDLERVFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQGPSSPF-TLIPHLLLCGSGAHPGGGVCGAPGYIAAQM 516
           HGA+SL+QL F RPLP   P S + + I  L LCGSGAHPGGGV GA G  AAQ+
Sbjct: 522 HGAMSLDQLYFARPLP---PYSNYRSPIRGLYLCGSGAHPGGGVMGAAGRNAAQV 573

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351713645|gb|EHB16564.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Heterocephalus glaber]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/541 (52%), Positives = 365/541 (67%), Gaps = 23/541 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERRHV+GGAAVTEEIIPGF+FSRASYLLSLLRP IY D
Sbjct: 42  AGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGL+L  R+P S+TP+  +   +K  +SL LG D  +N +QIA+FS KDAQ F +
Sbjct: 102 LELKKHGLRLHLRNPHSFTPMLEEGTGSKVPRSLLLGTDMAENQKQIAQFSQKDAQAFPR 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR-----------------GEMKDVYS 163
           Y+ ++  +   +DPL D+AP D       +L  R                   ++   Y 
Sbjct: 162 YEEYMSRLVLAIDPLLDVAPVDMAAFQHDSLLQRLKALSTLKPLLKAGCILGAQLPQYYQ 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           + T     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMGG EG++GAW 
Sbjct: 222 VFTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGIRGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+ R  GVV  +GLE+++K VLS+
Sbjct: 282 YVQGGMGALSDAIASSATVHGASIFTEKTVAKVQVNSEGRVQGVVLQDGLEVRSKVVLSS 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L L P+  L E   + +  ++  SPVTKINVA+  +PNFLA PN       PH
Sbjct: 342 ASPQVTFLKLTPQEWLPEAFIERISQLNTQSPVTKINVAVDRLPNFLAAPNAPRGQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCE+   +  A++DA  G+PS RPMIE+ +PSSLD TL+PPG HV  LFTQ+T
Sbjct: 402 HQCSIHLNCENTLLLHQAFEDAKGGLPSHRPMIELCIPSSLDPTLAPPGCHVISLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E+++  Y   VF  IE Y PGF   +VG +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYTLAGGKIWDEQERNAYTDKVFECIEAYAPGFKGSVVGRDILTPPDLERVFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQ-GPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 521
           H A+SL+QL F RP+P+  G  SP      L LCGSGAHPGGGV GA G  AA +V R +
Sbjct: 522 HCAMSLDQLYFARPVPLHSGYRSPLW---GLYLCGSGAHPGGGVMGAAGRNAAHVVIRDL 578

Query: 522 R 522
           +
Sbjct: 579 K 579

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213514352|ref|NP_001135210.1| Probable oxidoreductase C10orf33 [Salmo salar] gi|209154186|gb|ACI33325.1| Probable oxidoreductase C10orf33 [Salmo salar]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/533 (54%), Positives = 356/533 (66%), Gaps = 24/533 (4%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            GHNGLV+AAYL + GL  AVLERRHVLGGAAV+EEIIPGF FSR SYLLSLLRPHI++D
Sbjct: 39  GGHNGLVAAAYLQKGGLKTAVLERRHVLGGAAVSEEIIPGFHFSRCSYLLSLLRPHIFRD 98

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTN-KAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLKL  RDP ++TP+  +       +SL LG D   N  +I +FS  DA+ + +
Sbjct: 99  LELKKHGLKLYMRDPHAFTPMLEEGVGGLPPRSLLLGSDLAMNQREIGKFSETDAKVYPE 158

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMK-----------------DVYS 163
           +  H++++   + PL D  P D   L    L  R   ++                 D Y 
Sbjct: 159 FITHLDKLAVAIHPLLDSPPVDIAGLTGGALRRRMAALRSALPLVQCGLKLGKNIPDFYE 218

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           ++T     ILN WFESEPLKATL TD +IGAM SP+SP + YVLLHHVMG  E  KGAW 
Sbjct: 219 IITAPIMKILNRWFESEPLKATLATDAVIGAMTSPNSPGSGYVLLHHVMGELEKEKGAWG 278

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y EGGMG VS+A+A SA++ GA +FT Q V ++ + SD  A GVV  +G EI ++ VLSN
Sbjct: 279 YVEGGMGGVSKAIASSARSHGADIFTEQDVHQVLVGSDGSAKGVVLKDGTEIYSRVVLSN 338

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            T   T   L P+  L     +AV  IDY SPVTKINVA+  +PNFLA P P +    PH
Sbjct: 339 ATPYVTFKTLTPQSALSPAFIKAVGQIDYTSPVTKINVAVDKLPNFLAAPTP-DGKPGPH 397

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCE ++ +  AY+D  +G PS+RPMIEM +PS LD TL+PPG HV LLFTQFT
Sbjct: 398 HQCSIHLNCESVEVLQTAYEDCKEGRPSSRPMIEMTIPSVLDPTLAPPGSHVVLLFTQFT 457

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY L G R WT++D+  +A +VFS IEQY PGF   IVG ++LTPPDLE+ FGLTGGNIF
Sbjct: 458 PYSLVGGRAWTDQDREAFADSVFSWIEQYAPGFKSSIVGKDVLTPPDLERIFGLTGGNIF 517

Query: 463 HGALSLNQLLFNRPLP-IQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAA 514
           HGA+SL+QL   RPLP +    SP   I  L LCGSG+HPGGGV G+PG+ AA
Sbjct: 518 HGAMSLDQLYLARPLPSLSDYRSP---IKGLYLCGSGSHPGGGVMGSPGWNAA 567

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301763186|ref|XP_002917014.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Ailuropoda melanoleuca]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/540 (52%), Positives = 366/540 (67%), Gaps = 21/540 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL R G++ AV ERR V+GGAAVTEEIIPGF+FSRASYLLSLLRP IY D
Sbjct: 42  AGHNGLVAAAYLQRLGVNTAVFERRPVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTD 101

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLKL  R+P S+TP+  +   +K  +SL LG D  +N +QIA+FS KDAQ F K
Sbjct: 102 LELKKHGLKLHLRNPYSFTPMLEEGMGSKVPRSLLLGTDMAENQKQIAQFSRKDAQAFPK 161

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR-----------------GEMKDVYS 163
           Y+  +  +   +DPL D AP D       +L  R                   ++   Y 
Sbjct: 162 YEAFMNRLALAIDPLLDAAPVDLEAFQRGSLLQRLQALSTLKPVLQAGRVLGAQLPQYYQ 221

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVMGG EGV+GAW 
Sbjct: 222 VLTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGVQGAWG 281

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y +GGMGA+S A++ SA A GA +FT +TV  + + ++ R  GVV  +G E+++K VLSN
Sbjct: 282 YVQGGMGALSDAISSSATAHGASVFTEKTVATVLVSNEGRVQGVVLQDGSEVRSKVVLSN 341

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L L P+  L +   + +  +D  SPVTKINVA+  +P+FLA PN       PH
Sbjct: 342 ASPQATFLKLTPQEWLPKEFVERISQLDTKSPVTKINVAVDRLPDFLAAPNAPGGQPLPH 401

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED   +  A++DA +G+PS RPMIE+ +PSSLD TL+PPG HV  LFTQ+T
Sbjct: 402 HQCSIHLNCEDTLLLHQAFKDAMEGLPSHRPMIELCIPSSLDPTLAPPGCHVVSLFTQYT 461

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
           PY LAG + W E++++ YA  VF  IE Y PGF + +VG +ILTPPDLE+ FGL GGNIF
Sbjct: 462 PYMLAGGKVWDEQERSAYADKVFDCIEAYAPGFKRSVVGRDILTPPDLERIFGLPGGNIF 521

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 522
           H A++L+QL F RP P+   SS    +  L LCGSGAHPGGGV GA G+ AA++V R ++
Sbjct: 522 HCAMTLDQLYFARPTPLH--SSYRCPLRGLYLCGSGAHPGGGVMGAAGHNAARVVFRDLK 579

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147904744|ref|NP_001088589.1| pyridine nucleotide-disulphide oxidoreductase domain 2 [Xenopus laevis] gi|54648504|gb|AAH85048.1| LOC495473 protein [Xenopus laevis]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/531 (53%), Positives = 358/531 (67%), Gaps = 20/531 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            GHNGLV+AAYL R+G++  VLERRH++GGAAVTEEIIPGF+FSRASYLLSLLRP IYKD
Sbjct: 38  GGHNGLVAAAYLQRSGVNTVVLERRHLIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYKD 97

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
           LELKKHGLK+  RDP S+TP+      +  +SL LG D  +N  QIARFS +DA+ + +Y
Sbjct: 98  LELKKHGLKVYFRDPHSFTPILEANNGHAPRSLLLGADMAENQRQIARFSERDAKAYPEY 157

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDV-----------------YSL 164
           ++ +  +   +DPL D  P D   +    L  R   +K +                 Y +
Sbjct: 158 ENFMNRLVLAIDPLLDAPPLDTKAIFEGTLLRRLRSLKTLQPLLKAGLTLGSQFPKYYEV 217

Query: 165 LTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAY 224
           LT     IL+ WFESEPLK TL TD +IGAM SP +P + YVLLHHVMG  EG KG+W Y
Sbjct: 218 LTAPICKILDQWFESEPLKCTLATDAVIGAMASPATPGSGYVLLHHVMGELEGKKGSWGY 277

Query: 225 PEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN-GLEIKAKYVLSNT 283
            EGGMG VSQA+A+SA ASGA+++T + V +I +D   + SGVV N G E+++  VLSN 
Sbjct: 278 VEGGMGMVSQAIAKSAAASGAEIYTEKVVEQILVDQSGKTSGVVLNDGTEVQSSLVLSNA 337

Query: 284 TAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHH 343
           +   T  +L PK  L       +   +  SPVTKINVA+  +PNFLA PN  +    PHH
Sbjct: 338 SPHHTFFNLTPKEQLPADFMTMISQFNAKSPVTKINVAVDRLPNFLASPNKVDGKPMPHH 397

Query: 344 HGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTP 403
             SIHLN E+MQ + DAY+DA +GIPSTRPMIE+ +PSSLD TL+PPG HV  LFTQ+TP
Sbjct: 398 QCSIHLNSEEMQLLNDAYEDANRGIPSTRPMIELCIPSSLDPTLAPPGCHVISLFTQYTP 457

Query: 404 YKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH 463
           Y L+  R W EE+K  YA  VF  IE+Y PGF   ++G +ILTPPDLE+ FGL GGNIFH
Sbjct: 458 YTLSEGRQWNEEEKNLYADMVFDWIEKYAPGFKSSVIGRDILTPPDLERIFGLPGGNIFH 517

Query: 464 GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAA 514
           G++SL+QL F+R  P+   S+  T IP L LCGSG+HPGGGV GA G  AA
Sbjct: 518 GSMSLDQLYFSR--PVATFSNYKTPIPGLYLCGSGSHPGGGVMGASGRNAA 566

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334313954|ref|XP_003339970.1| PREDICTED: LOW QUALITY PROTEIN: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Monodelphis domestica]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/534 (52%), Positives = 365/534 (68%), Gaps = 21/534 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGL++AAYL + G++ AVLERRH++GGAAVTEE+IPGF+FSRASYLLSLLRP IYKD
Sbjct: 85  AGHNGLIAAAYLQKLGINTAVLERRHLIGGAAVTEELIPGFKFSRASYLLSLLRPQIYKD 144

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
           LELKKHGLK+  R+P S+TP+  +    K  +SL LG+D  +  +QIA+FS KDAQ F K
Sbjct: 145 LELKKHGLKVYLRNPYSFTPILEEGIQGKPPRSLLLGMDMAETQKQIAQFSPKDAQAFPK 204

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR-----------------GEMKDVYS 163
           Y+  +  + + +DPL D +P D       +L  R                   ++   Y 
Sbjct: 205 YEMFMNRLASAIDPLLDSSPVDTTAFQHSSLRQRLRAFFTLKPLLQAGLILGSQLPQYYQ 264

Query: 164 LLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA 223
           ++T     +L+DWFESEPLKATL TD +IGAM SPH+P + YVLLHHVMGG EG KGAW 
Sbjct: 265 VITGPITKVLDDWFESEPLKATLATDAVIGAMTSPHAPGSGYVLLHHVMGGLEGKKGAWG 324

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSN 282
           Y EGGMGA+S A+AR+A+A GA +FT + V ++ ++S+ R  GVV  +G E+++K VLSN
Sbjct: 325 YVEGGMGALSHAIARAAEAHGANIFTEKPVDKVKVNSNGRVQGVVLKDGTEVRSKLVLSN 384

Query: 283 TTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPH 342
            + + T L L P+  L E   + +  +D  SPVTKINVA+  +PNFLA PN +     PH
Sbjct: 385 ASPQITFLKLAPREQLPEEFIKKISQLDTQSPVTKINVAVDKLPNFLAAPNATSGLPLPH 444

Query: 343 HHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
           H  SIHLNCED Q +  A++DAT+G+PS  PMIE+ +PSSL  TL+PPG H+  L TQ+T
Sbjct: 445 HQCSIHLNCEDTQILHQAFEDATKGVPSLSPMIELCIPSSLGATLAPPGCHIIXLVTQYT 504

Query: 403 PYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIF 462
            + +AG + W E+++  YA  VF  IE Y PGF + ++G +ILTPPDLE  FGL GGNIF
Sbjct: 505 QFSMAGGKVWDEQERNAYADRVFDCIEAYAPGFKKSVIGRDILTPPDLESVFGLPGGNIF 564

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQM 516
           HGA+SL+QL F RPL     S+  + +  L LCGSGAHPGGGV GA G  AAQ+
Sbjct: 565 HGAMSLDQLYFARPLSSH--SNYRSPVRGLYLCGSGAHPGGGVMGAAGRNAAQV 616

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118092902|ref|XP_423118.2| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Gallus gallus]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 287/537 (53%), Positives = 363/537 (67%), Gaps = 19/537 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AGHNGLV+AAYL +AGL  AVLE+RHVLGGAAVTEEI+PGF+FSRASYLLSLLRP IY +
Sbjct: 56  AGHNGLVAAAYLQQAGLRTAVLEKRHVLGGAAVTEEIVPGFRFSRASYLLSLLRPQIYTE 115

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
           LEL++HGLK+L RDP S+TPL  D+  +  +SL +G D  +   QIA+FS KDAQ + KY
Sbjct: 116 LELQRHGLKVLPRDPYSFTPLLEDR--SPPRSLLMGHDMAQTRRQIAQFSQKDAQAYPKY 173

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTR--------------RGEMKDVYSLLTC 167
           +  +  + + ++PL D  P D   L   +L  R                ++   Y +LT 
Sbjct: 174 EVFMGRLVSAINPLLDAPPADTAALGQGSLLQRLRALWPLLQAGLALGRQLPHFYEVLTA 233

Query: 168 SAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEG 227
               IL+ WFESEPLKATL TD +IGAM SPH+P   YVLLHHVMG  EG +GAW Y  G
Sbjct: 234 PVSKILDHWFESEPLKATLATDAVIGAMSSPHTPGGGYVLLHHVMGELEGRRGAWGYVAG 293

Query: 228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVLSNTTAK 286
           GMGA+SQA+AR+A   GA +FT Q V  + L SD +A GVV  +G E+++K VLSN + +
Sbjct: 294 GMGALSQAIARAAATYGAHIFTEQAVCRVLLGSDGQAQGVVMQDGTEVRSKVVLSNASPQ 353

Query: 287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
            T L+L P+  L E   + +Q +D  SPVTKINVA+  +P+FLA PN  ++   PHH  S
Sbjct: 354 LTFLELTPQERLPEDFVRRIQQLDTRSPVTKINVAVDRLPSFLAAPNTRDSQPLPHHCCS 413

Query: 347 IHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKL 406
           IHLNCE    +  AY +A  G PS+RPMIE+ +PS+LD  L+PPG HV  LFTQ+TPY+L
Sbjct: 414 IHLNCEGTHLLHQAYTEAAHGHPSSRPMIELCIPSALDPGLAPPGCHVVSLFTQYTPYEL 473

Query: 407 AGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGAL 466
           AG + W E+ +  YA  VF  IE Y PGF   ++G +ILTPPDLE+ FGL GGNIFHG +
Sbjct: 474 AGGQPWDEKARNAYADTVFDCIEAYAPGFKVSVIGRDILTPPDLERIFGLPGGNIFHGGM 533

Query: 467 SLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK 523
           SL+QL F RP P    S+  + +P L LCGSGAHPGGGV GA G  AAQ+V R  R+
Sbjct: 534 SLDQLYFTRPAPSY--STYQSPVPGLYLCGSGAHPGGGVMGAAGRNAAQVVLRDFRR 588

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
UNIPROTKB|Q3MHH6	581	PYROXD2 "Pyridine nucleotide-d	0.695	0.626	0.534	7.8e-144
ZFIN|ZDB-GENE-050506-147	571	pyroxd2 "pyridine nucleotide-d	0.678	0.621	0.55	2.1e-141
MGI|MGI:1921830	580	Pyroxd2 "pyridine nucleotide-d	0.697	0.629	0.513	1.9e-138
WB|WBGene00018146	544	F37C4.6 [Caenorhabditis elegan	0.957	0.920	0.520	3.8e-133
TAIR|locus:505006683	556	AT5G49555 [Arabidopsis thalian	0.977	0.919	0.458	9.1e-116
UNIPROTKB|Q8N2H3	581	PYROXD2 "Pyridine nucleotide-d	0.795	0.716	0.485	2.3e-101
RGD|1303232	581	Pyroxd2 "pyridine nucleotide-d	0.797	0.717	0.483	1.3e-98
UNIPROTKB|O07794	536	Rv3829c "PROBABLE DEHYDROGENAS	0.694	0.677	0.266	6.8e-28
UNIPROTKB|P21685	492	crtI "Phytoene desaturase (lyc	0.523	0.556	0.227	7.5e-13
UNIPROTKB|Q8X0Z0	570	carB "Phytoene dehydrogenase"	0.594	0.545	0.271	2.9e-12

UNIPROTKB|Q3MHH6 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 996 (355.7 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
 Identities = 196/367 (53%), Positives = 249/367 (67%)

Query:   157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAE 216
             ++   Y +LT  A  +L+ WFESEPLKATL TD +IGAM +P+ P + YVLLHHVMG  E
Sbjct:   215 QLPQYYQVLTAPAAKVLDQWFESEPLKATLATDAVIGAMTNPYIPGSGYVLLHHVMGSLE 274

Query:   217 GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIK 275
             GV+GAW Y +GGMGA+S A+A SA A G  +FT +TV ++ + S  R  GVV  +G E++
Sbjct:   275 GVRGAWGYVQGGMGALSDAIASSATAHGVSIFTEKTVAKVQVSSGGRVQGVVLQDGSEVR 334

Query:   276 AKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPS 335
             +K VLSN + + T L L P+  L E     +  +D  SPVTKINVA+  +P+FLA PN  
Sbjct:   335 SKVVLSNASPQITFLKLTPQEWLPEEFVARIAQLDTKSPVTKINVAVNRLPDFLAAPNTP 394

Query:   336 ENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVC 395
              +   PHH  SIHLNCED   V  A++D   G+PS RP+IE+ +PSSLD TL+PPG HV 
Sbjct:   395 GDQPLPHHQCSIHLNCEDTLLVHQAFEDTLDGLPSKRPLIELCIPSSLDPTLAPPGCHVV 454

Query:   396 LLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG 455
              LFTQ+TPY LAG + W E+ +  YA  VF  IE Y PGF   +VG +ILTPPDLE+ FG
Sbjct:   455 SLFTQYTPYTLAGGKAWDEQQRNTYADRVFDCIEAYAPGFKGSVVGRDILTPPDLERVFG 514

Query:   456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQ 515
             L GGNIFH A+SL+QL F RP+P+   SS  + +  L LCGSGAHPGGGV GA G  AA 
Sbjct:   515 LPGGNIFHCAMSLDQLYFARPVPLH--SSYCSPLRGLYLCGSGAHPGGGVMGAAGRNAAH 572

Query:   516 MVNRLMR 522
             +V R +R
Sbjct:   573 VVFRDLR 579

GO:0016491 "oxidoreductase activity" evidence=IEA

ZFIN|ZDB-GENE-050506-147 pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Danio rerio (taxid:7955)]

 Score = 988 (352.9 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
 Identities = 198/360 (55%), Positives = 243/360 (67%)

Query:   160 DVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVK 219
             D Y L+T  A  +LN WFESEPL ATL TD +IGA  SP++P + YVLLHHVMG  E  K
Sbjct:   208 DFYELVTAPAMKVLNRWFESEPLIATLATDSVIGANTSPNNPGSGYVLLHHVMGELEKEK 267

Query:   220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKY 278
             G+W Y EGGMG V Q++ARSA++ GA +FT+  V ++ +  D  A GVV T+G E+ +K 
Sbjct:   268 GSWGYVEGGMGGVPQSIARSARSLGADIFTNTDVEQVLIGPDGSAKGVVLTDGTEVHSKV 327

Query:   279 VLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENT 338
             VLSN T   T   L P+  L E    AV  IDY SPVTKINVA+  +P+FLA PN ++  
Sbjct:   328 VLSNATPHVTFKRLTPQDALPEAFITAVDQIDYTSPVTKINVAVDKLPDFLAAPNGADGK 387

Query:   339 VQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLF 398
               PHH  SIHLNCE ++ + DAY +   G PS+RPMIEM +PS LD TL+PPG HV  LF
Sbjct:   388 AGPHHQCSIHLNCESVEVLEDAYWEGQHGRPSSRPMIEMTIPSVLDPTLAPPGCHVVSLF 447

Query:   399 TQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTG 458
              QFTPY L G R WT+EDK  +   VF  +E+Y PGF   IVG +ILTP DLE+ FGLTG
Sbjct:   448 IQFTPYLLEGRRAWTDEDKERFGDTVFDWVERYAPGFKASIVGKDILTPADLERVFGLTG 507

Query:   459 GNIFHGALSLNQLLFNRPLP-IQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMV 517
             GNIFHG++SL+QL   RPLP I    SP   +  L LCGSG+HPGGGV GA G+ +A  V
Sbjct:   508 GNIFHGSMSLDQLYLARPLPSIADYRSP---VKGLYLCGSGSHPGGGVMGAAGWSSALRV 564

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1921830 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Mus musculus (taxid:10090)]

 Score = 958 (342.3 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
 Identities = 189/368 (51%), Positives = 247/368 (67%)

Query:   153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM 212
             T   ++     +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YVLLHHVM
Sbjct:   210 TLGAQLPQYCEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVM 269

Query:   213 GGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNG 271
             G  EG +GAW+Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+ R  GV + +G
Sbjct:   270 GSLEGTQGAWSYVQGGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRVQGVTLQDG 329

Query:   272 LEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLAD 331
              E++++ VLS  + + T L+L P+  L     + +  +D  SPVTKINVA+  +PNF A 
Sbjct:   330 EEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAA 389

Query:   332 PNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPG 391
             PN   +  Q HH  SIHLNCED   +  A++DA  G+PS +PMIE+ +PSSLD TL+PPG
Sbjct:   390 PNAPGDQPQGHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQKPMIELCIPSSLDPTLAPPG 449

Query:   392 HHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLE 451
              HV  LFTQ+TPY LAG + W E++K  YA  VF  IE Y PGF + ++  +ILTPPDLE
Sbjct:   450 CHVVSLFTQYTPYTLAGGKVWNEQEKNTYADKVFDCIEAYAPGFKRSVLARDILTPPDLE 509

Query:   452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGY 511
             + F L GGNIFHGA+SL+QL F RP+P    S     +  L LCGSGAHPGGGV GA G 
Sbjct:   510 RIFRLPGGNIFHGAMSLDQLYFARPVPQH--SDYRCPVQGLYLCGSGAHPGGGVMGAAGR 567

Query:   512 IAAQMVNR 519
              AA +V R
Sbjct:   568 NAAHVVFR 575

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

WB|WBGene00018146 F37C4.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 274/526 (52%), Positives = 351/526 (66%)

Query:     3 GHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDL 62
             GHNGL +AAYL +AG  V VLERRHV+GGAAVTEEI+PGF+FSRASYLLSLLRP + ++L
Sbjct:    23 GHNGLTAAAYLTKAGKKVCVLERRHVVGGAAVTEEIVPGFRFSRASYLLSLLRPVVMQEL 82

Query:    63 ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYD 122
              LKK GL+   R+P S+TP+      N  +SL LG+D  +N ++IA+FS +DA N+ KY+
Sbjct:    83 NLKKFGLRYHIRNPNSFTPIR-----NTHESLLLGMDMAENQKEIAKFSQRDAGNYPKYE 137

Query:   123 HHIEEITNLLDPLFDIAPHDFGN----LL--MYNLFTRRGEMK-----DVYSLLTCSAFS 171
             H I EI +  + L D  P D       LL  +Y LF     +      D Y L+T     
Sbjct:   138 HFISEIVHSFEQLMDYEPLDLQKPIHKLLPHLYLLFKTVQPLGLRNAVDFYELMTAPISK 197

Query:   172 ILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGA 231
             I+N WFES+ LKATL TDG+IG   SP  P T YVLLHHV+GG +  KGAW Y  GGMGA
Sbjct:   198 IMNKWFESDVLKATLGTDGVIGLAASPMDPGTGYVLLHHVIGGLDEHKGAWGYVYGGMGA 257

Query:   232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKYVLSNTTAKCTLL 290
             VS A+A  A++ GA+++T Q V E+ LD +  A GV ++NG E+ +K V+SN T   T  
Sbjct:   258 VSNAIAECAKSHGAEIYTEQDVQEVLLDGNV-AKGVRLSNGKELHSKIVMSNATPHVTFN 316

Query:   291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLN 350
              L+ K +L E   + +  IDY SPVTKINVA+K +PNFLA PN     + PHH  +IH+N
Sbjct:   317 HLVKKESLPEEFHRNINQIDYTSPVTKINVAVKELPNFLAKPNQGSEPM-PHHQTTIHMN 375

Query:   351 CEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTL--SPPGHHVCLLFTQFTPYKLAG 408
             CE+MQ V DA  D   G  S RP+IEM +PSS+D T+  S  GH V LLFTQ+TP+    
Sbjct:   376 CENMQVVHDAVMDYKNGRYSRRPVIEMTIPSSVDRTIVDSADGH-VVLLFTQYTPFS-PK 433

Query:   409 DRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSL 468
             D +WTEE K  YA +VFS I+ Y P F+  ++GY+ILTPPD++  FG+TGGNIFHG++SL
Sbjct:   434 DGEWTEEKKTEYAKHVFSEIDAYAPNFSSSVIGYDILTPPDIQNTFGITGGNIFHGSMSL 493

Query:   469 NQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAA 514
             +QL  +RP  I   S+  T I  L LCGSGAHPGGGV GAPG ++A
Sbjct:   494 DQLYVSRP--ISKWSNYSTPIESLYLCGSGAHPGGGVTGAPGRLSA 537

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:505006683 AT5G49555 [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 244/532 (45%), Positives = 330/532 (62%)

Query:     3 GHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDL 62
             GHNGL +AAYLAR GLSVAVLERRHV+GGAAVTEEI+PGF+FSR SYL  LLRP I ++L
Sbjct:    22 GHNGLTAAAYLARGGLSVAVLERRHVIGGAAVTEEIVPGFKFSRCSYLQGLLRPCIIREL 81

Query:    63 ELKKHGLKLLTRDPRSYTP--------LSPDKWTNKAKSLTLG---LDPQKNYE-QIARF 110
             EL +HGLKLL R P S+TP        L PD+  N ++         D    YE Q+ RF
Sbjct:    82 ELGRHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLNHSEISKFSKHDADAYPRYEKQLERF 141

Query:   111 -SVKDAQNFEKYDHHIEEITNLLDPLFD-IAPHDF-GNLLMYNLFTRRGEMKDVYSLLTC 167
                 D          ++  ++  D L + +    F    L   +     +M     LL  
Sbjct:   142 CGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLA 201

Query:   168 SAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEG 227
              A  +LN+WFES+ LKA+L TD +IG+  S H+P + YVLLHHVMG  +G KG W+Y EG
Sbjct:   202 PASKVLNNWFESDVLKASLATDAVIGSTASVHTPGSGYVLLHHVMGETDGEKGIWSYVEG 261

Query:   228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK 286
             GMG+VS A+A +A+ +GA++FT+  V+EI  +      GV+  +G  +++  +LSN T  
Sbjct:   262 GMGSVSMAIANAAKEAGAEIFTNAEVSEILTEDSSIVKGVLLADGTRVESSAILSNATPY 321

Query:   287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
              T ++L+P   L E    A+++ DY+S  TKIN+A+  +P F    N + +   P H G+
Sbjct:   322 RTYVELVPTNVLPENFVSAIKNSDYSSATTKINLAVDKLPQFQCC-NTNHSGPGPEHFGT 380

Query:   347 IHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKL 406
             IH+  E M +V  A  D+  G+PS RP+IEM +PS+LDNT+SPPG HV  LF Q+TPYK 
Sbjct:   381 IHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPSTLDNTISPPGKHVINLFIQYTPYK- 439

Query:   407 AGDRDWTEED-KANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGA 465
               D  W +   +  +A   F  I++Y PGF+  I+ Y++LTPPDLE+E GLTGGNIFHGA
Sbjct:   440 PSDGSWEDPTYREAFAQRCFKLIDEYAPGFSSSIISYDMLTPPDLEREIGLTGGNIFHGA 499

Query:   466 LSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMV 517
             + L+ L   RP  ++G S+  + +  L LCGSGAHPGGGV GAPG  AA +V
Sbjct:   500 MGLDSLFLMRP--VKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHVV 549

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q8N2H3 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 211/435 (48%), Positives = 277/435 (63%)

Query:   101 QKNYEQIARFSVKDAQNFEKYDHHIE-EITNLLDPL-FDIAPHDFGNLL--MYNLFTRR- 155
             QK   Q ++   +    +E++ H +   I  LLD    D+A    G+LL  M +L T + 
Sbjct:   145 QKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAAPVDMAAFQHGSLLQRMRSLSTLKP 204

Query:   156 ---------GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYV 206
                       ++   Y +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YV
Sbjct:   205 LLKAGRILGAQLPRYYEVLTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYV 264

Query:   207 LLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASG 266
             LLHHVMGG EG++GAW Y +GGMGA+S A+A SA   GA +FT +TV ++ ++S+    G
Sbjct:   265 LLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQG 324

Query:   267 VVT-NGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSI 325
             VV  +G E+++K VLSNT+ + T L L P+  L E   + +  +D  SPVTKINVA+  +
Sbjct:   325 VVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKINVAVDRL 384

Query:   326 PNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDN 385
             P+FLA PN       PHH  SIHLNCED   +  A++DA  G+PS RP+IE+ +PSSLD 
Sbjct:   385 PSFLAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAFEDAMDGLPSHRPVIELCIPSSLDP 444

Query:   386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 445
             TL+PPG HV  LFTQ+ PY LAG + W E+++  YA  VF  IE Y PGF   +VG +IL
Sbjct:   445 TLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYADRVFDCIEVYAPGFKDSVVGRDIL 504

Query:   446 TPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQ-GPSSPFTLIPHLLLCGSGAHPGGG 504
             TPPDLE+ FGL GGNIFH A+SL+QL F RP+P+  G   P   +  L LCGSGAHPGGG
Sbjct:   505 TPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHSGYRCP---LQGLYLCGSGAHPGGG 561

Query:   505 VCGAPGYIAAQMVNR 519
             V GA G  AA +  R
Sbjct:   562 VMGAAGRNAAHVAFR 576

GO:0016491 "oxidoreductase activity" evidence=IEA

RGD|1303232 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 210/434 (48%), Positives = 273/434 (62%)

Query:   101 QKNYEQIARFSVKDAQNFEKYDHHIE-EITNLLDPL-FDIAPHDFGNLL--MYNLFTRR- 155
             QK   Q +R   +    +E++   +   I  LLD    DIA    G+LL  +  L T R 
Sbjct:   145 QKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSLLQRLRALSTLRP 204

Query:   156 ---------GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYV 206
                       ++   Y +LT     +L+ WFESEPLKATL TD +IGAM SPH+P + YV
Sbjct:   205 LLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYV 264

Query:   207 LLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASG 266
             LLHHVMG  EG++GAW+Y +GGMGA+S A+A SA A GA +FT +TV ++ ++S+ R  G
Sbjct:   265 LLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEGRVQG 324

Query:   267 VVTNG-LEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSI 325
             VV  G  E++++ VLS  + + T L+L P+  L     + +  +D  SPVTKINVA+  +
Sbjct:   325 VVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRL 384

Query:   326 PNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDN 385
             PNF A PN   +  Q HH  SIHLNCED   +  A++DA  G+PS RPMIE+ +PSSLD 
Sbjct:   385 PNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDP 444

Query:   386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 445
             TL+P G HV  LFTQ+TPY LAG + W E+ K  YA  VF  IE Y PGF + ++G +IL
Sbjct:   445 TLAPTGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDIL 504

Query:   446 TPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGV 505
             TP DLE+ FGL GGNIFHGA+SL+QL F RP+P    S     +  L LCGSGAHPGGGV
Sbjct:   505 TPQDLERIFGLPGGNIFHGAMSLDQLYFARPVPQH--SDYRCPVQGLYLCGSGAHPGGGV 562

Query:   506 CGAPGYIAAQMVNR 519
              GA G  AA +V R
Sbjct:   563 MGAAGRNAAHIVFR 576

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|O07794 Rv3829c "PROBABLE DEHYDROGENASE" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 275 (101.9 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
 Identities = 100/375 (26%), Positives = 154/375 (41%)

Query:   148 MYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPH-SPST--S 204
             MY   T   E   +  +L  S   +L+  F        L     + A+ + +  P+T  S
Sbjct:   150 MYACATNEFERSAIDDMLFGSVTDVLDRHFPDREKHGALRGSMTVLAVNTLYRGPATPGS 209

Query:   205 YVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDK-- 262
                L   +G  EG    W    GG+GA++  L++  + +G ++     VTEI +D+ +  
Sbjct:   210 AAALAFGLGVPEGDFVRWKKLRGGIGALTTHLSQLLERTGGEVRLRSKVTEIVVDNSRSS 269

Query:   263 -RASGVVTN-GLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINV 320
              R  GV T  G  + +  V+S      T+ +LI    L          ID+     +++ 
Sbjct:   270 ARVRGVRTAAGDTLTSPIVVSAIAPDVTINELIDPAVLPSEIRDRYLRIDHRGSYLQMHF 329

Query:   321 ALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLP 380
             AL   P F A P  + N   P    S+ + C   +QV   ++D  +GI    P + + +P
Sbjct:   330 ALAQPPAFAA-PYQALN--DPSMQASMGIFCTP-EQVQQQWEDCRRGIVPADPTVVLQIP 385

Query:   381 SSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIV 440
             S  D +L+P G      F  + P +           K     NV   I +  P F   I+
Sbjct:   386 SLHDPSLAPAGKQAASAFAMWFPIEGGSKYGGYGRAKVEMGQNVIDKITRLAPNFKGSIL 445

Query:   441 GYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAH 500
              Y   TP  +   FG  GG+  H  L  +Q+  NRP P      P   I  L L  +G H
Sbjct:   446 RYTTFTPKHMGVMFGAPGGDYCHALLHSDQIGPNRPGPKGFIGQPIP-IAGLYLGSAGCH 504

Query:   501 PGGGVCGAPGYIAAQ 515
              G G+   PGY AA+
Sbjct:   505 GGPGITFIPGYNAAR 519

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P21685 crtI "Phytoene desaturase (lycopene-forming)" [Pantoea ananatis (taxid:553)]

 Score = 129 (50.5 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
 Identities = 67/294 (22%), Positives = 120/294 (40%)

Query:     2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
             AG  GL  A  L  AG+ V +LE+R   GG A   E   GF F     +++   P   ++
Sbjct:     9 AGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED-QGFTFDAGPTVIT--DPSAIEE 65

Query:    62 L-ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
             L  L    LK    +    TP     W +  K      D  +   QI +F+ +D + + +
Sbjct:    66 LFALAGKQLKEYV-ELLPVTPFYRLCWES-GKVFNYDNDQTRLEAQIQQFNPRDVEGYRQ 123

Query:   121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
             +  +   +    +    +    F  L   ++     ++  + +    S +S +  + E E
Sbjct:   124 FLDYSRAVFK--EGYLKLGTVPF--LSFRDMLRAAPQLAKLQAWR--SVYSKVASYIEDE 177

Query:   181 PLKATLLTDGL-IGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARS 239
              L+       L +G   +P + S+ Y L+H +    E   G W +P GG GA+ Q + + 
Sbjct:   178 HLRQAFSFHSLLVGG--NPFATSSIYTLIHAL----EREWGVW-FPRGGTGALVQGMIKL 230

Query:   240 AQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI 293
              Q  G ++  +  V+ +    +K  +  + +G     + V SN     T  DL+
Sbjct:   231 FQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLL 284

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|Q8X0Z0 carB "Phytoene dehydrogenase" [Fusarium fujikuroi (taxid:5127)]

 Score = 196 (74.1 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 93/342 (27%), Positives = 157/342 (45%)

Query:     2 AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR--PHIY 59
             AG  G+ +AA LA+AG  V +LE+    GG         G +F +   LL L R    I+
Sbjct:    13 AGVGGVSTAARLAKAGFKVTILEKNDFTGGRCSLIHN-DGHRFDQGPSLLLLPRFFHEIF 71

Query:    60 KDL--ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQN 117
             +DL   L   G++LL  +P +Y     + W     S  +  D  K  + I   +V+    
Sbjct:    72 QDLGTSLTAEGVELLKCEP-NY-----NIWFGDGSSFEMSTDLTKMKKAIE--AVEGIDG 123

Query:   118 FEKYDHHIEEITNLLDPLFD-IAPHDFGNLLMYNLFTRRGEMKDVYSLLTC-SAFSILND 175
             FE+Y   ++E     +   + +   +F ++L      R   + +++++    S ++  + 
Sbjct:   124 FERYLGFLQESHRHYEVSVESVLRRNFPSILS---LARPEVLFNLFNIHPLESIWTRASK 180

Query:   176 WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
             +F +E L+  + T G +   +SP     +Y LL +    AEG+     YP GG   V +A
Sbjct:   181 YFWTERLRR-VFTFGSMYMGMSPFDAPGTYSLLQYTEL-AEGI----LYPRGGFHKVVEA 234

Query:   236 LARSAQASGAQLFTSQTVTEITLD-SDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI 293
             L    Q  G +   S  V  I++D +  +A+GVV ++G  + +  V+SN     T  +L+
Sbjct:   235 LVNVGQRLGVEYRLSTGVKSISIDQATGKANGVVLSDGTHLPSDIVISNADLVYTYNNLL 294

Query:   294 PK----GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLAD 331
             PK     +L +R T    SI +    +KI   L +   FLAD
Sbjct:   295 PKTSYADSLSKRETSC-SSISFYWSASKIVPELNAHNIFLAD 335

GO:0016120 "carotene biosynthetic process" evidence=IMP

GO:0016166 "phytoene dehydrogenase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2FV57	CRTP_STAA8	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
P64751	Y897_MYCTU	No assigned EC number	0.2950	0.9043	0.8841	yes	N/A
Q4L978	CRTP_STAHJ	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2043	0.8623	0.8984	yes	N/A
Q8N2H3	PYRD2_HUMAN	1, ., -, ., -, ., -	0.5323	0.9904	0.8915	yes	N/A
P21685	CRTI_PANAN	1, ., 1, 4, ., 9, 9, ., -	0.2222	0.8565	0.9105	yes	N/A
Q5RAP5	PYRD2_PONAB	1, ., -, ., -, ., -	0.5212	0.9904	0.8915	yes	N/A
Q8NUQ3	CRTP_STAAW	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2276	0.8432	0.8873	yes	N/A
Q3MHH6	PYRD2_BOVIN	1, ., -, ., -, ., -	0.5333	0.9923	0.8932	yes	N/A
Q68FT3	PYRD2_RAT	1, ., -, ., -, ., -	0.5240	0.9923	0.8932	yes	N/A
Q3U4I7	PYRD2_MOUSE	1, ., -, ., -, ., -	0.5148	0.9904	0.8931	yes	N/A
Q5HCY6	CRTP_STAAC	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
Q53589	CRTP_STAAE	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
Q7A3D9	CRTP_STAAN	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
Q2YWE5	CRTP_STAAB	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2254	0.8508	0.8953	yes	N/A
P64752	Y921_MYCBO	No assigned EC number	0.2950	0.9043	0.8841	yes	N/A
Q6G6B0	CRTP_STAAS	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
Q99R73	CRTP_STAAM	1, ., 1, 4, ., 9, 9, ., 4, 4	0.2295	0.8432	0.8873	yes	N/A
Q6GDN7	CRTN_STAAR	1, ., 3, ., 8, ., 2	0.2	0.8642	0.9003	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	523
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	9e-92
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	3e-27
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-12
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	5e-12
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-08
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-06
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	3e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-06
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-05
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	8e-05
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	5e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-04
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	5e-04
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	7e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	0.001
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.003
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.003
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	0.003
pfam01946	229	pfam01946, Thi4, Thi4 family	0.003

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  288 bits (739), Expect = 9e-92
 Identities = 144/529 (27%), Positives = 206/529 (38%), Gaps = 64/529 (12%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP-HIYK 60
           AG NGL +AA LARAGL V VLE+   +GG A T E + GF+F        +  P  +++
Sbjct: 11  AGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFR 69

Query: 61  DLE-LKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE 119
           +L  L   GL LL  DP     L           + +  D +   E +      D +   
Sbjct: 70  ELGNLDADGLDLLPPDPAYRVFLPDGDA------IDVYTDLEATAELLESLEPGDGEALA 123

Query: 120 KY-----DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
           +Y       +      LL P                                 SA     
Sbjct: 124 RYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLT---------SALDFFR 174

Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
             F SE L+A L    + G    P S   +  LL   +G + G      YP GGMGA+  
Sbjct: 175 GRFGSELLRALLAYSAVYGGA--PPSTPPALYLLLSHLGLSGG----VFYPRGGMGALVD 228

Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP 294
           ALA  A+  G ++ T   V++I ++  K      ++G  I+A  V+SN      LL  + 
Sbjct: 229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP--ALLARLL 286

Query: 295 KGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDM 354
                 R   +      A                        + +   HH +I L     
Sbjct: 287 GEARRPRYRGSYLKSLSA---------------LSLYLGLKGDLLPLAHHTTILLGD-TR 330

Query: 355 QQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTE 414
           +Q+ +A+ D     P     + + +PS  D +L+P G H       F            +
Sbjct: 331 EQIEEAFDDRAGRPPP----LYVSIPSLTDPSLAPEGKHST-----FAQLVPVPSLGDYD 381

Query: 415 EDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFN 474
           E K + A  +  ++E+  PG    IV  E+LTP DLE+  GL GG+IF GA +L+QL   
Sbjct: 382 ELKESLADAI-DALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPF 440

Query: 475 RPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK 523
           RP P        T I  L L G+  HPGGGV G PG  AA +   +   
Sbjct: 441 RPPP------KSTPIKGLYLVGASTHPGGGVPGVPGS-AAAVALLIDLD 482

Length = 487

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score =  114 bits (287), Expect = 3e-27
 Identities = 126/544 (23%), Positives = 198/544 (36%), Gaps = 83/544 (15%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL  A  LA AG+ V V+E+R   GG A   E   GF+F           P +   
Sbjct: 6   AGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFD--------TGPTVITM 56

Query: 62  LELKKHGLKLLTRDPRSYTPL----------SPDKWTNKAKSLTLGLDPQKNYEQIARFS 111
            E  +    L  RD   Y  L            D        L +  D ++   QIARF+
Sbjct: 57  PEALEELFALAGRDLADYVELVPLDPFYRLCWED-----GSQLDVDNDQEELEAQIARFN 111

Query: 112 VKDAQNFEKYDHHIEEITNL-LDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAF 170
             D   + ++  + E +       L  +      +LL  +L         +  L   S +
Sbjct: 112 PGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL------LALLAWRSLY 165

Query: 171 SILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGM 229
           S +  +F  E L+       L +G   +P    + Y L+  +    E   G W +P GG 
Sbjct: 166 SKVARFFSDERLRQAFSFHALFLG--GNPFRTPSIYALISAL----EREWGVW-FPRGGT 218

Query: 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTL 289
           GA+  A+A+ A+  G +L  +  V  I  +  +  +  + +G  + A  V+SN     T 
Sbjct: 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278

Query: 290 LDLIPKGNLDERTTQAVQSIDYASPVT-----KINVALKSIPNFLADPNPSENTVQPHHH 344
             L+P           +      SP        +       P               HH 
Sbjct: 279 RRLLPNHPRRRYPAARLSRKRP-SPSLFVLYFGLLGVDGHWPQL------------AHH- 324

Query: 345 GSIHLNC---EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQF 401
            ++       E   ++F        G  +  P + +  P+  D +L+PPG     L+   
Sbjct: 325 -TLCFGPRYKELFDEIFRK------GRLAEDPSLYLHRPTVTDPSLAPPGCE--NLYVLA 375

Query: 402 -TPYKLAGDRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGG 459
             P+    D DW+ E    Y   + + +E+   PG    IV     TP D    +    G
Sbjct: 376 PVPHLGTADVDWSVE-GPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLG 434

Query: 460 NIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG-YIAAQMVN 518
           + F    +L Q  + R      P +    I +L L G+G HPG GV   PG   +A+   
Sbjct: 435 SAFSLEHTLTQSAWFR------PHNRDRKIDNLYLVGAGTHPGAGV---PGVLGSAKATA 485

Query: 519 RLMR 522
           +LM 
Sbjct: 486 KLML 489

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 62/325 (19%), Positives = 103/325 (31%), Gaps = 34/325 (10%)

Query: 6   GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYKDLEL 64
           GL +A  L RAG  V VLE R  +GG   T     GF     A +           +L L
Sbjct: 3   GLAAARELLRAGFDVTVLEARDRVGGRIRTVR-FDGFLIELGAQWFHG--AYPNLLNLLL 59

Query: 65  KKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHH 124
           +      L   P    P    K+        L  D       + R  ++   + E+    
Sbjct: 60  ELGLELGLLLFPFPGDPFVRLKYRGGPY-PDLPGDLPPPLFLLLRSLLELELSLEEPIR- 117

Query: 125 IEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKA 184
                 LL     +   +              ++     LL+ + F  L        L  
Sbjct: 118 ---RALLLLVALLLLAPEL----------LELDLLSFSDLLSAAGFLELFLLLFRSLLAG 164

Query: 185 TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQASG 244
            L    L  +         S  L     GG     G +      +G + Q +A +    G
Sbjct: 165 ALGFLPLELSA---RLALLSLRLFDLEDGGVVFPGGGF---TLPLGGLPQLIAAALGLLG 218

Query: 245 AQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT---TAKCTLLDLIPKGNLDER 301
            ++  +  V  IT   D   +    +G  I+A  V+        K  L    P   L   
Sbjct: 219 GRVRLNTRVRSITKSGDG-VTVTTVDGRTIEADAVIVTVPLGVLKRILFL--PP--LPAA 273

Query: 302 TTQAVQSIDYASPVTKINVALKSIP 326
             +A++++ + S V+K+ +  ++  
Sbjct: 274 KQEAIRNLGFGS-VSKVFLEFETPF 297

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 46/294 (15%)

Query: 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGV-VTNGLEIKAKY 278
           G   YP+GG+G ++++L +  +  G Q+     VT+I L++ K A GV + +G +I AK 
Sbjct: 219 GGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGK-AVGVKLADGEKIYAKR 277

Query: 279 VLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENT 338
           ++SN T   T   L+   NL ++     +                  P+FL+     +  
Sbjct: 278 IVSNATRWDTFGKLLKAENLPKKEKNWQR-------------NYVKSPSFLSLHLGVKAD 324

Query: 339 VQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLF 398
           V P      H+  ED   +                 I + +P+ LD +L+P GHH+    
Sbjct: 325 VLPPGTECHHILLEDWTNLEKPQG-----------TIFVSIPTLLDPSLAPEGHHI---I 370

Query: 399 TQFTPYKLAGDRDWT-------EEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLE 451
             FTP  +    DW        E  K   A  +   +E+  PG    I   E+ TP    
Sbjct: 371 HTFTPSSM---EDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHR 427

Query: 452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGV 505
           +  G   G   +G +    L    P+P        T IP L   G    PG G+
Sbjct: 428 RFLGRDSGT--YGPIPRRTLPGLLPMPFNR-----TAIPGLYCVGDSCFPGQGL 474

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF 44
          AG +GLV+A  LA+ G  V VLE+R  +GG A +E   PG++ 
Sbjct: 4  AGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSER-DPGYRH 45

Length = 66

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL +A +LARAG  V V ER    GG  V + IIP F+              I  D
Sbjct: 547 AGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNIIPQFRIPAEL---------IQHD 595

Query: 62  LEL-KKHGLKLLTRDPRSYTP 81
           +E  K HG+K         T 
Sbjct: 596 IEFVKAHGVKFEFGCSPDLTV 616

Length = 1019

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 69/327 (21%), Positives = 111/327 (33%), Gaps = 68/327 (20%)

Query: 211 VMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN 270
           V+  A+   G W +  G M  +S  L  + +  G  L T Q VT I     +    VV +
Sbjct: 214 VLQMAQAPHGLW-HLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVD 272

Query: 271 G-----LEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSI 325
                 L +KA  V++N   +  LL+L+    L     + ++ +   S      + +K  
Sbjct: 273 SRKQEDLNVKADDVVANLPPQS-LLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331

Query: 326 PNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDN 385
                               ++ ++C    Q    +Q                   SL  
Sbjct: 332 --------------------ALPVDCPPHLQFLSDHQ------------------GSLFV 353

Query: 386 TLSPPGHH---------VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT 436
           ++S  G           +   FT    +    + D+T + K  Y   +   +  Y     
Sbjct: 354 SISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYTQTIIERLGHYFDLLE 412

Query: 437 QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS--SPFTLIPHLLL 494
           ++ V  E+ TP   E+  G   G +  G L      F       GP   S  T +  L L
Sbjct: 413 ENWVHVELATPRTFERWTGRPQGIV--GGLGQRPSTF-------GPFGLSSRTPVKGLWL 463

Query: 495 CGSGAHPGGGVCGAPGYIAAQMVNRLM 521
           CG   HPG G  G     +A MV R +
Sbjct: 464 CGDSIHPGEGTAGVS--YSALMVVRQI 488

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 207 LLHHVMGGAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKR 263
           L     G + G++G   YP+GG      + +ALAR+A+A G ++     VT +  +    
Sbjct: 121 LRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLEREGGGV 180

Query: 264 ASGVVTNGLEIKAKYV 279
              V T   EI+A  V
Sbjct: 181 T--VETEDGEIRADKV 194

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 24/109 (22%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL +  +LARAG  V V E++   GG  V + IIP F+ S  S         I KD
Sbjct: 545 AGPAGLSAGYFLARAGHPVTVFEKKEKPGG--VVKNIIPEFRISAES---------IQKD 593

Query: 62  LEL-KKHGLKL------------LTRDPRSYTPLSPDKWTNKAKSLTLG 97
           +EL K HG++             L      Y  L+   W +    L  G
Sbjct: 594 IELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGG 642

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 44.0 bits (105), Expect = 8e-05
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
          AG +GL +A YLA+AGL VAV ER+   GG
Sbjct: 33 AGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT 283
           Y EGG   +  ALA + +A G ++     VT + +D     +GV  +G E     V+S T
Sbjct: 192 YLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVIS-T 249

Query: 284 TAKCTLLDLIPKGNLDERTTQAVQSIDY 311
                L  L+P  +L       ++ IDY
Sbjct: 250 APPPILARLVP--DLPADVLARLRRIDY 275

Length = 434

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL 280
           + LA  A+ +GA+L+    VT +  + D    GV     E++AK V+
Sbjct: 99  KWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVI 145

Length = 396

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 16/90 (17%)

Query: 6   GLVSAAYLARAGLSVAVLERRHVLGGAA---------------VTEEIIPGFQFSRASYL 50
           GL +A YLA  G  V VLE     GGAA                  E+ P    S A + 
Sbjct: 16  GLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWR 75

Query: 51  LSLLRPHIYKDLELKKHGLKLLTRDPRSYT 80
                      L  ++  L L  R+     
Sbjct: 76  ELSEELGTGAGLR-RRGLLDLAAREGLKGL 104

Length = 387

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
          AG +GL +A YLA+AGL VA+ ER+   GG
Sbjct: 38 AGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGA--AVTEEIIPGFQFSRASYLLSLLR--PH 57
           G  GL +A  LAR GLSV +LER  +  GA       + PG +  RA  L  L      
Sbjct: 7  GGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARLALESRD 66

Query: 58 IYKDLELKKHGLKLLTR 74
          ++++L +++ G+    R
Sbjct: 67 LWREL-IEELGIDCDFR 82

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 214 GAEGVKGAWAYPEGGM---GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN 270
           G + V G    P GG      +++ALA +A+  G  +         +L+ D R  GV T+
Sbjct: 137 GPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVII-EGGTPVTSLERDGRVVGVETD 195

Query: 271 GLEIKAKYVL 280
           G  I+A  V+
Sbjct: 196 GGTIEADKVV 205

Length = 387

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERR-----HVLGGAAVT----EEIIPGFQ 43
          AG  G  +A  LA+AGL V VLE+          G  ++    EE+IP F 
Sbjct: 11 AGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61

Length = 396

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
          AG +GL +A YLA+ GL V VLER    GG
Sbjct: 29 AGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
          AG  G   AA  A  G+ VA++ER   LGG  V
Sbjct: 13 AGQAGPPLAARAAGLGMKVALIERGL-LGGTCV 44

Length = 463

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
          AG +GL +A YLA+ GL VA++ER    GG A
Sbjct: 25 AGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56

This family includes a putative thiamine biosynthetic enzyme. Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG4254|consensus	561		100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
PLN02612	567	phytoene desaturase	100.0
PRK07233	434	hypothetical protein; Provisional	100.0
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.97
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.97
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.97
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.97
PLN02487	569	zeta-carotene desaturase	99.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.96
PRK07208	479	hypothetical protein; Provisional	99.95
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.95
PLN02576	496	protoporphyrinogen oxidase	99.95
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.94
PLN02268	435	probable polyamine oxidase	99.94
PLN02529	738	lysine-specific histone demethylase 1	99.92
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.91
PLN03000	881	amine oxidase	99.9
PLN02676	487	polyamine oxidase	99.9
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.9
PLN02568	539	polyamine oxidase	99.89
PLN02976	1713	amine oxidase	99.86
COG3349	485	Uncharacterized conserved protein [Function unknow	99.84
KOG0029|consensus	501		99.83
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.79
KOG1276|consensus	491		99.79
KOG0685|consensus	498		99.77
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.71
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.65
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.48
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.37
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.19
COG2081	408	Predicted flavoproteins [General function predicti	99.11
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.11
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.06
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.06
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.06
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.01
COG0579	429	Predicted dehydrogenase [General function predicti	98.95
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.94
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.93
KOG2820|consensus	399		98.89
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.86
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.83
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.83
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.73
KOG1439|consensus	440		98.69
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.69
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.69
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.67
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.64
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.63
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.62
PRK08274	466	tricarballylate dehydrogenase; Validated	98.61
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.59
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.58
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.58
PRK07121	492	hypothetical protein; Validated	98.57
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.52
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.51
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.47
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.47
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.46
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.46
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.43
KOG2844|consensus	856		98.42
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.4
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.4
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.39
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.34
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.34
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.34
PRK10157	428	putative oxidoreductase FixC; Provisional	98.3
PRK06175	433	L-aspartate oxidase; Provisional	98.28
PRK05257	494	malate:quinone oxidoreductase; Validated	98.28
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.27
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.27
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.26
PRK12839	572	hypothetical protein; Provisional	98.25
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.25
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.23
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.23
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.2
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
PRK07588	391	hypothetical protein; Provisional	98.19
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.17
PRK10015	429	oxidoreductase; Provisional	98.16
PRK06847	375	hypothetical protein; Provisional	98.15
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.15
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.15
PRK06184	502	hypothetical protein; Provisional	98.15
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.14
PRK07190	487	hypothetical protein; Provisional	98.14
PRK07045	388	putative monooxygenase; Reviewed	98.12
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.11
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.11
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.1
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.09
PRK07804	541	L-aspartate oxidase; Provisional	98.07
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.06
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.06
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.05
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.05
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.04
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.03
PRK08401	466	L-aspartate oxidase; Provisional	98.03
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.02
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.02
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.02
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.99
PRK07395	553	L-aspartate oxidase; Provisional	97.98
PRK08275	554	putative oxidoreductase; Provisional	97.98
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.97
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.97
PRK08163	396	salicylate hydroxylase; Provisional	97.96
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.96
PRK06834	488	hypothetical protein; Provisional	97.94
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.93
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.93
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.91
PLN02815	594	L-aspartate oxidase	97.9
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.9
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.9
PRK08244	493	hypothetical protein; Provisional	97.89
PRK07512	513	L-aspartate oxidase; Provisional	97.88
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.88
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.87
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.84
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.84
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.82
KOG2404|consensus	477		97.81
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.8
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.78
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.76
PRK06185	407	hypothetical protein; Provisional	97.74
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.72
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.72
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.71
PRK08071	510	L-aspartate oxidase; Provisional	97.71
COG3573	552	Predicted oxidoreductase [General function predict	97.68
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.68
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.63
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.53
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.48
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.46
PLN02697	529	lycopene epsilon cyclase	97.46
PRK09077	536	L-aspartate oxidase; Provisional	97.45
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.43
KOG2415|consensus	621		97.42
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.37
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.34
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.3
PRK09897	534	hypothetical protein; Provisional	97.28
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.24
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.22
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.2
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.19
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.19
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.15
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.14
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.11
KOG1399|consensus	448		97.07
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.06
PRK12831	464	putative oxidoreductase; Provisional	97.06
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.05
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.03
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.97
PLN02661	357	Putative thiazole synthesis	96.96
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.93
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.93
PLN02852	491	ferredoxin-NADP+ reductase	96.92
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.91
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.91
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.87
PRK06753	373	hypothetical protein; Provisional	96.86
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.86
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.84
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.81
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.81
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.8
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	96.78
PRK07236	386	hypothetical protein; Provisional	96.77
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.77
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.77
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.76
PRK06116	450	glutathione reductase; Validated	96.76
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.75
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.74
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	96.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.72
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.71
PTZ00188	506	adrenodoxin reductase; Provisional	96.71
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.69
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.68
PRK09126	392	hypothetical protein; Provisional	96.68
PRK06475	400	salicylate hydroxylase; Provisional	96.66
PRK07538	413	hypothetical protein; Provisional	96.66
KOG2853|consensus	509		96.65
PRK08013	400	oxidoreductase; Provisional	96.62
KOG2614|consensus	420		96.62
PRK05868	372	hypothetical protein; Validated	96.61
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.61
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.6
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.59
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.56
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.56
TIGR02053	463	MerA mercuric reductase. This model represents the	96.55
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.53
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.52
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.52
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.48
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.47
PRK14694	468	putative mercuric reductase; Provisional	96.46
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.46
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.44
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.44
PRK14727	479	putative mercuric reductase; Provisional	96.44
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.37
PRK13748	561	putative mercuric reductase; Provisional	96.36
PRK06370	463	mercuric reductase; Validated	96.35
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.33
KOG0399|consensus	2142		96.33
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.3
PTZ00058	561	glutathione reductase; Provisional	96.27
KOG2665|consensus	453		96.26
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.24
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.24
PRK06126	545	hypothetical protein; Provisional	96.23
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.22
PTZ00052	499	thioredoxin reductase; Provisional	96.21
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.2
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.19
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.16
PRK10262	321	thioredoxin reductase; Provisional	96.16
PLN02985	514	squalene monooxygenase	96.13
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.09
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.09
PRK11445	351	putative oxidoreductase; Provisional	96.04
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.03
PTZ00367	567	squalene epoxidase; Provisional	95.98
PLN02463	447	lycopene beta cyclase	95.95
PLN02507	499	glutathione reductase	95.91
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	95.9
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.89
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.83
PRK13984	604	putative oxidoreductase; Provisional	95.75
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.68
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.66
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.64
PLN02546	558	glutathione reductase	95.61
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	95.6
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.59
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.54
PRK07845	466	flavoprotein disulfide reductase; Reviewed	95.46
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	95.46
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.41
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.38
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.32
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	95.25
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.15
PRK08294	634	phenol 2-monooxygenase; Provisional	95.08
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	94.8
KOG1298|consensus	509		94.74
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	94.42
PRK06996	398	hypothetical protein; Provisional	94.33
KOG1335|consensus	506		93.98
PRK02106	560	choline dehydrogenase; Validated	93.91
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	93.65
KOG2852|consensus	380		93.55
KOG0042|consensus	680		93.55
KOG1336|consensus	478		93.53
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.27
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	92.99
KOG2960|consensus	328		92.7
PRK06116	450	glutathione reductase; Validated	92.58
KOG1800|consensus	468		92.54
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.39
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	92.39
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	92.33
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.13
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	91.99
PRK07846	451	mycothione reductase; Reviewed	91.63
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.15
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.13
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	91.04
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	90.59
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.51
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	90.51
PRK13512	438	coenzyme A disulfide reductase; Provisional	90.5
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	90.49
KOG0405|consensus	478		90.3
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	90.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	89.87
PLN02507	499	glutathione reductase	89.78
PRK09126	392	hypothetical protein; Provisional	89.51
PRK09564	444	coenzyme A disulfide reductase; Reviewed	89.49
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	89.13
PRK08013	400	oxidoreductase; Provisional	89.08
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.06
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	89.02
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.01
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	89.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	88.82
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.72
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	88.68
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.67
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.51
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.32
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	88.31
PRK07845	466	flavoprotein disulfide reductase; Reviewed	88.09
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	87.97
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	87.5
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	87.3
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	87.13
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	86.99
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	86.99
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	86.97
PTZ00058	561	glutathione reductase; Provisional	86.9
PRK14694	468	putative mercuric reductase; Provisional	86.85
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.83
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	86.8
PRK06370	463	mercuric reductase; Validated	86.79
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	86.72
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	86.72
PLN02785	587	Protein HOTHEAD	86.47
PLN02463	447	lycopene beta cyclase	86.45
PRK05868	372	hypothetical protein; Validated	86.33
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	86.28
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	86.2
PRK10262	321	thioredoxin reductase; Provisional	86.03
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.01
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	85.78
PRK14727	479	putative mercuric reductase; Provisional	85.5
PRK06126	545	hypothetical protein; Provisional	85.5
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.01
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	84.77
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	84.58
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	84.44
KOG1346|consensus	659		84.37
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	84.26
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	84.23
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	83.95
PRK07236	386	hypothetical protein; Provisional	83.61
PRK13748	561	putative mercuric reductase; Provisional	83.6
PTZ00052	499	thioredoxin reductase; Provisional	83.55
PRK06753	373	hypothetical protein; Provisional	83.53
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	83.18
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	83.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	83.09
PRK06475	400	salicylate hydroxylase; Provisional	83.04
TIGR02053	463	MerA mercuric reductase. This model represents the	82.9
PLN02546	558	glutathione reductase	82.54
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	81.82
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	81.57
PLN02661	357	Putative thiazole synthesis	81.25
KOG4716|consensus	503		80.94
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	80.88
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	80.87
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	80.81
KOG4405|consensus	547		80.75
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	80.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	80.61

>KOG4254|consensus

Probab=100.00  E-value=3.5e-66  Score=486.54  Aligned_cols=507  Identities=49%  Similarity=0.771  Sum_probs=424.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhhhccccccccCceEeecCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYT   80 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~~~~lgl~~~g~~~~~~~~~~~~   80 (523)
                      |+|++||+||++|++.|.+|+|+|++...||.+-+.++..||.|+++++.+.+..|....++.+.++|+.+...+|..+.
T Consensus        21 g~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l~~r~p~sft  100 (561)
T KOG4254|consen   21 GGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRLHERSPCSFT  100 (561)
T ss_pred             cCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhhccCCCcccc
Confidence            89999999999999999999999999999999988888899999999999998899999999999988888877776666


Q ss_pred             cCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHH---------
Q psy893           81 PLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL---------  151 (523)
Q Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  151 (523)
                      +.+..+.   -+...+.+|.+....++..|...++..+++|.+.+.+++..+.++.+.-+.+...+....+         
T Consensus       101 ~~~~~~l---p~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d~~~~~~~~~~~~~l~~~~~~~~~  177 (561)
T KOG4254|consen  101 PSLMGYL---PEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLDAAPADPPLFIHGLLLVLYTLAST  177 (561)
T ss_pred             chhhccc---hhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhhccccccchhhhhhhHHHHHHHHH
Confidence            5544200   0344555666655666888988888899999999999988887776654433222111100         


Q ss_pred             ----H----hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCcee
Q psy893          152 ----F----TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWA  223 (523)
Q Consensus       152 ----~----~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  223 (523)
                          .    .....+..+...+..+....+..||....++..+...+.++...++.+++..|.+++++++..+...|.|.
T Consensus       178 ~~pl~l~~~i~~~~~~~~~~~~~ap~~k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvllh~vlg~~d~~~g~~~  257 (561)
T KOG4254|consen  178 YAPLLLAGFIKMKPLGALYELLLAPISKVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLLHHVLGELDGHKGGWG  257 (561)
T ss_pred             hhhHHHhhHhhcCcHHHHHHHHhcchhhHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHHHHHHHhhcccCCccc
Confidence                0    11234445666667788888999988776666655555555556788888999999999988888889999


Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT  302 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~  302 (523)
                      ||.||+++++.++++.++++|++|.+++.|.+|..++ |+++||+ .||++++++.||+|++++.++.+|++++.+|+++
T Consensus       258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LPeef  336 (561)
T KOG4254|consen  258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALPEEF  336 (561)
T ss_pred             CCCCChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCCchh
Confidence            9999999999999999999999999999999999999 9999999 9999999999999999999999999999999887


Q ss_pred             HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893          303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS  382 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~  382 (523)
                        .++++.+...+.+     ++.|.|++.++.. ..+++||.+.+++++++.+...+.+.+...|.....|.+++++||.
T Consensus       337 --~i~q~d~~spv~k-----~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~  408 (561)
T KOG4254|consen  337 --VIQQLDTVSPVTK-----DKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS  408 (561)
T ss_pred             --hhhhccccccccc-----ccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence              5556555544443     4556677766522 4567899999999889888888888777777777789999999999


Q ss_pred             CCCCCCCCCceEEEEEecccccCCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcc
Q psy893          383 LDNTLSPPGHHVCLLFTQFTPYKLAGDRD-WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       383 ~d~~~ap~G~~~i~~~~~~~p~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                      .||+++|+|+|+|.+|+.+.|+.|.++.. ||+..|++.++++++.+++++|+|++.|+..++.||.|.+|+++.++|++
T Consensus       409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~  488 (561)
T KOG4254|consen  409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNI  488 (561)
T ss_pred             cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcc
Confidence            99999999999999999888886555433 89999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM  521 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~asG~~aA~~i~~~~  521 (523)
                      ||.++..+|....||+..+.  .++|||+|||+||+++|||+|++++.|++||...+.+.
T Consensus       489 ~~~~~~ld~g~l~~Pv~~~s--~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a~~~~  546 (561)
T KOG4254|consen  489 FHGAMGLDQGYLHRPVMAWS--NYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSAILDR  546 (561)
T ss_pred             cCcccccccccccCCccccc--cCCCCCCceEEecCCCCCCCCccccchhHHHHHHhhhh
Confidence            99999999988899988887  89999999999999999999999999999999887754

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=1.9e-61  Score=503.90  Aligned_cols=480  Identities=24%  Similarity=0.373  Sum_probs=373.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh--hhhhcccccc-ccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR--PHIYKDLELK-KHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~--~~~~~~lgl~-~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+||||++++||+++|++ ++||.||.|++++....  ..+++++|++ ...+++...++.
T Consensus         5 GaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~   83 (502)
T TIGR02734         5 GAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPLDPF   83 (502)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEECCCc
Confidence            8999999999999999999999999999999999998 79999999998864322  2567777742 123677776654


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHh-HHHhhhhcCCCChhhHHHHHHHhccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITN-LLDPLFDIAPHDFGNLLMYNLFTRRG  156 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (523)
                       +..++.+     |+.+.++.+.+++.+++.+++|.+.+.|.+|++.+.++.. ....++..++.++.++......    
T Consensus        84 -~~~~~~~-----g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (502)
T TIGR02734        84 -YRLCWED-----GSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLP----  153 (502)
T ss_pred             -eEEECCC-----CCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhH----
Confidence             3333343     7788999999999999999999999999999999998876 3344554444443332211100    


Q ss_pred             cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHH
Q psy893          157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQAL  236 (523)
Q Consensus       157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l  236 (523)
                        .........|+.++++++|.++.++.++...+.+.. ..|.+.++.+.++.+    .....|.+ ++.||++.++++|
T Consensus       154 --~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~----~~~~~g~~-~~~gG~~~l~~al  225 (502)
T TIGR02734       154 --QLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISA----LEREWGVW-FPRGGTGALVAAM  225 (502)
T ss_pred             --hhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHH----HHhhceEE-EcCCCHHHHHHHH
Confidence              011122357899999999999999999986543222 456666655554432    12345666 8999999999999


Q ss_pred             HHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCe
Q psy893          237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPV  315 (523)
Q Consensus       237 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  315 (523)
                      .+.++++|++|+++++|++|..++ +++++|+ .+|+++.||+||+|+++..+...|++.+..++...+++++++++.+.
T Consensus       226 ~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~  304 (502)
T TIGR02734       226 AKLAEDLGGELRLNAEVIRIETEG-GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSL  304 (502)
T ss_pred             HHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCee
Confidence            999999999999999999999887 7888888 78888999999999999888777887654444455677788888899


Q ss_pred             EEEEEecCCCC-cccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHh-hcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893          316 TKINVALKSIP-NFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDA-TQGIPSTRPMIEMVLPSSLDNTLSPPGHH  393 (523)
Q Consensus       316 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~v~~~s~~d~~~ap~G~~  393 (523)
                      ++++++++..+ .+   +      .+.+|  ++++ .++++..   +... ..|.++++|++++++||..||+++|+|++
T Consensus       305 ~~~~lgl~~~~~~~---~------~~~~~--~~~~-~~~~~~~---~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~  369 (502)
T TIGR02734       305 FVLYFGLLGVDGHW---P------QLAHH--TLCF-GPRYKEL---FDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCE  369 (502)
T ss_pred             eEEEEeeccccCcC---C------CcCce--eEec-CcCHHHH---HHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCc
Confidence            99999999533 11   1      12345  6776 4555432   2222 24667788999999999999999999999


Q ss_pred             EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHh-CCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893          394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  472 (523)
Q Consensus       394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~-~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  472 (523)
                      ++++++. +|+......+|.+ .|+++.+++++.|++. +|+++++|+..++.||.||+++++.++|++||..+.+.|..
T Consensus       370 ~~~~~~~-~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~  447 (502)
T TIGR02734       370 NLYVLAP-VPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSA  447 (502)
T ss_pred             cEEEEEe-CCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcc
Confidence            9887764 5653011235754 6899999999999998 99999999999999999999999999999999999999887


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhcC
Q psy893          473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK  523 (523)
Q Consensus       473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~~  523 (523)
                      .+||.      ..+|+++|||+||+|+|||+|++++  ||++||++|++++++
T Consensus       448 ~~rp~------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~  494 (502)
T TIGR02734       448 WFRPH------NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP  494 (502)
T ss_pred             cCCCC------CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence            78872      3578999999999999999999986  999999999998763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=1.1e-56  Score=465.64  Aligned_cols=475  Identities=21%  Similarity=0.283  Sum_probs=346.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh----hhhhh-ccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL----RPHIY-KDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~----~~~~~-~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++|++|+||||++.+||++++++ ++||.||.|++++...    .+.++ +.++.....+++...+
T Consensus         7 GaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (493)
T TIGR02730         7 GSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPDP   85 (493)
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCCC
Confidence            8999999999999999999999999999999999998 7999999999885432    23322 2222111114433322


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      +. +...+++     |..+.++.|.+++.+++.+++|++.+.|++|++.+.+..+.+..+...+...+..+.. .+....
T Consensus        86 ~~-~~~~~~~-----g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  158 (493)
T TIGR02730        86 VQ-IHYHLPN-----GLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFR-VFFKHP  158 (493)
T ss_pred             cc-EEEECCC-----CeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHH-HHhhch
Confidence            22 2222332     6678889999999999999999999999999999888776544331111111111111 111111


Q ss_pred             ccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHH
Q psy893          156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA  235 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~  235 (523)
                      .....+..+...|+.++++++|.|+.++.++...+.+....++.+.+..+..+.+.   .....|.+ ++.||+..++++
T Consensus       159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~g~~-~~~gG~~~l~~~  234 (493)
T TIGR02730       159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYGGIN-YPKGGVGQIAES  234 (493)
T ss_pred             hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccceEe-cCCChHHHHHHH
Confidence            11112334456899999999999999999988765543323334444444433221   11123445 899999999999


Q ss_pred             HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCC
Q psy893          236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASP  314 (523)
Q Consensus       236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  314 (523)
                      |.+.++++|++|+++++|++|..++ +++.+|+ .+|+++.||+||+|++++.++.+|++.+.+++...+.+++++++.+
T Consensus       235 L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s  313 (493)
T TIGR02730       235 LVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPS  313 (493)
T ss_pred             HHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCc
Confidence            9999999999999999999999987 8888898 7888899999999999998888899876676666667778888889


Q ss_pred             eEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceE
Q psy893          315 VTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHV  394 (523)
Q Consensus       315 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~  394 (523)
                      .+++|++++....    |.    . ...|  .+++  ++++.+           ...+|++++++||..||+++|+|+++
T Consensus       314 ~~~~~l~l~~~~~----p~----~-~~~~--~~~~--~~~~~~-----------~~~~~~~~v~~ps~~dps~aP~G~~~  369 (493)
T TIGR02730       314 FLSLHLGVKADVL----PP----G-TECH--HILL--EDWTNL-----------EKPQGTIFVSIPTLLDPSLAPEGHHI  369 (493)
T ss_pred             eEEEEEEecCccC----CC----C-CCcc--EEec--chhhcc-----------CCCCCeEEEEeCCCCCCCCCcCCcEE
Confidence            9999999997421    10    0 1112  2333  222211           12468999999999999999999998


Q ss_pred             EEEEecccccCCCC---CCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCccccccc
Q psy893          395 CLLFTQFTPYKLAG---DRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQL  471 (523)
Q Consensus       395 i~~~~~~~p~~~~~---~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~  471 (523)
                      |+++++ .+...|.   ..+| ++.|+++.+++++.|++++|+++++|+..++.||.|+++|++.++|+ ||..+...|.
T Consensus       370 i~~~~~-~~~~~w~~~~~~~y-~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~~~~~  446 (493)
T TIGR02730       370 IHTFTP-SSMEDWQGLSPKDY-EAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPRRTLP  446 (493)
T ss_pred             EEEecC-CChhhccCCCcHHH-HHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCccccccc
Confidence            877654 3321111   1134 55799999999999999999999999999999999999999999998 6765543333


Q ss_pred             ccCC-CCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          472 LFNR-PLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       472 ~~~r-p~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ...+ |       .++|+++|||+||+|+|||+|++++  ||++||++|+++++
T Consensus       447 ~~~~~~-------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~  493 (493)
T TIGR02730       447 GLLPMP-------FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG  493 (493)
T ss_pred             ccccCC-------CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3333 3       5689999999999999999999996  99999999999875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=1.9e-56  Score=464.77  Aligned_cols=462  Identities=21%  Similarity=0.250  Sum_probs=337.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh-----hhhhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL-----RPHIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~-----~~~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++|++|+||||++++||++++++ ++||.||.|++++.+.     .+.++++||++..  ++...+
T Consensus         8 GaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~d   84 (492)
T TIGR02733         8 GAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLP--EAKILD   84 (492)
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCc--ccccCC
Confidence            8999999999999999999999999999999999998 7999999999986542     2368888886522  123344


Q ss_pred             CCCcccCCCCcccCCC-CceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCC----CChhhHHHHH
Q psy893           76 PRSYTPLSPDKWTNKA-KSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAP----HDFGNLLMYN  150 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  150 (523)
                      +. +..++.+     + ..+.++.|.+++.+++.+.+|.+.+    |+..+.+..+....++...+    ..+..+... 
T Consensus        85 ~~-~~~~~~d-----g~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (492)
T TIGR02733        85 PA-CAVDLPD-----GSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQL-  153 (492)
T ss_pred             CC-cEEEECC-----CceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH-
Confidence            43 2333332     5 4677889999999999988887643    55555555544333322211    122221110 


Q ss_pred             HHhccccHHHHHHHHhhcHHHHHHhh--cCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCC
Q psy893          151 LFTRRGEMKDVYSLLTCSAFSILNDW--FESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGG  228 (523)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~l~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG  228 (523)
                      +............+...|+.++++++  +.++.++.++...+.......|.++++.+.++..  .......|.+ +++||
T Consensus       154 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~-~~~GG  230 (492)
T TIGR02733       154 VSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVL--QMAQAPHGLW-HLHGS  230 (492)
T ss_pred             HHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHh--hccccCCCce-eecCc
Confidence            00001111112223457999999987  8999999999876543333455566555543221  1122335677 89999


Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-----eEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-----LEIKAKYVLSNTTAKCTLLDLIPKGNLDERT  302 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-----~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~  302 (523)
                      ++.|+++|++.++++|++|+++++|++|..++ +++++|+ .+|     +++.||+||+|+++..+ .+|++++.+++.+
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~-~~ll~~~~~~~~~  308 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL-LELLGPLGLPPGY  308 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHH-HHhcCcccCCHHH
Confidence            99999999999999999999999999999987 7777776 554     57899999999999986 4688766677788


Q ss_pred             HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893          303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS  382 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~  382 (523)
                      .+++++++++.+.+++++++++...    +     .....|  .... .+                  ..+.++++.++ 
T Consensus       309 ~~~~~~~~~s~~~~~v~l~~~~~~~----~-----~~~~~~--~~~~-~~------------------~~~~~~v~~~~-  357 (492)
T TIGR02733       309 RKRLKKLPEPSGAFVFYLGVKRAAL----P-----VDCPPH--LQFL-SD------------------HQGSLFVSISQ-  357 (492)
T ss_pred             HHHHhcCCCCCceEEEEEeeccccc----C-----CCCCcc--eeec-cC------------------CCceEEEEeCC-
Confidence            8889999988889999999987421    0     011122  1111 11                  12367787765 


Q ss_pred             CCCCCCCCCceEEEEEec--ccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCc
Q psy893          383 LDNTLSPPGHHVCLLFTQ--FTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGN  460 (523)
Q Consensus       383 ~d~~~ap~G~~~i~~~~~--~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~  460 (523)
                      .||+++|+|++++++.+.  +.+|......+| ++.|+++.+++++.|++.+|+++++|+..++.||.||+++++.++|+
T Consensus       358 ~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y-~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~  436 (492)
T TIGR02733       358 EGDGRAPQGEATLIASSFTDTNDWSSLDEEDY-TAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGI  436 (492)
T ss_pred             ccccCCCCCceEEEEEcCCCHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcE
Confidence            578999999998865542  333321112245 45789999999999999999999999999999999999999999999


Q ss_pred             cccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHH
Q psy893          461 IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRL  520 (523)
Q Consensus       461 ~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~  520 (523)
                      +||+.+.+.|...+++       ..+|+++|||+||+|+|||+|++++  ||++||++|+++
T Consensus       437 ~~G~~~~~~q~~~~~~-------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~  491 (492)
T TIGR02733       437 VGGLGQRPSTFGPFGL-------SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS  491 (492)
T ss_pred             ECCCCcCccccCCcCC-------CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence            9999998888644444       4589999999999999999999998  999999999975

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-54  Score=444.40  Aligned_cols=468  Identities=32%  Similarity=0.498  Sum_probs=355.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh-hhhcccc-ccccCceEeecCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP-HIYKDLE-LKKHGLKLLTRDPRS   78 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~-~~~~~lg-l~~~g~~~~~~~~~~   78 (523)
                      |||++||+||++||++|++|+||||++++||++++++ .+||+||+|++++.+..+ .++++|+ ++..++.+...++. 
T Consensus        10 GaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-   87 (487)
T COG1233          10 GAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDLLPPDPA-   87 (487)
T ss_pred             CCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhccCcccceeeeccCCc-
Confidence            8999999999999999999999999999999999998 679999999988655444 6889998 88887877766553 


Q ss_pred             cccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCC-CChhhHHHHHHHhcccc
Q psy893           79 YTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAP-HDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  157 (523)
                      +...+.+     |..+.++.|++.+...+..+++.+.+.+.+++..+.+..+.+...+..+. ....     ........
T Consensus        88 ~~~~~~~-----g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (487)
T COG1233          88 YRVFLPD-----GDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELL-----LVPDTPER  157 (487)
T ss_pred             eeeecCC-----CCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhh-----hccccHHH
Confidence            4444443     78999999999999999999999999999998877776654433222211 1110     00011222


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHHH
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALA  237 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~  237 (523)
                      ...+......++.+++.++|.++.++..+......+. ..|.++++.+.++++    .....|.+ +|+||++.|+++|+
T Consensus       158 ~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~----~~~~~G~~-~p~GG~~al~~aL~  231 (487)
T COG1233         158 LLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSH----LGLSGGVF-YPRGGMGALVDALA  231 (487)
T ss_pred             HHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHH----hcccCCee-eeeCCHHHHHHHHH
Confidence            3344445567888889888999999999988765554 566666644444443    23455666 99999999999999


Q ss_pred             HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeE
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVT  316 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  316 (523)
                      +.++++||+|+++++|++|.+++ |+.++++ .+|+.+++|.||++..+.. ...+.+.. . .  .+......+..+.+
T Consensus       232 ~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~~~-~~~l~~~~-~-~--~~~~~~~~~~~~al  305 (487)
T COG1233         232 ELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADPAL-LARLLGEA-R-R--PRYRGSYLKSLSAL  305 (487)
T ss_pred             HHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCchhh-hhhhhhhh-h-h--hccccchhhhhHHH
Confidence            99999999999999999999998 8777777 6667889999999999933 34444321 1 0  11222233344555


Q ss_pred             EEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEE
Q psy893          317 KINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCL  396 (523)
Q Consensus       317 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~  396 (523)
                      ..+++++...           .++.+| ..++. .+..+.+.+.|.+ ..|+++   ++++++||..||++||+|++.  
T Consensus       306 ~~~~g~~~~~-----------~~~~~~-~~~~~-~~~~~~~~~~~~~-~~g~~~---~~~v~~ps~~Dps~AP~G~~~--  366 (487)
T COG1233         306 SLYLGLKGDL-----------LPLAHH-TTILL-GDTREQIEEAFDD-RAGRPP---PLYVSIPSLTDPSLAPEGKHS--  366 (487)
T ss_pred             HhccCCCCCC-----------cchhhc-ceEec-CCcHHHHHHHhhh-hcCCCC---ceEEeCCCCCCCccCCCCCcc--
Confidence            6666666420           112333 24555 6777888889988 777654   889999999999999999982  


Q ss_pred             EEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccccCCC
Q psy893          397 LFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRP  476 (523)
Q Consensus       397 ~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp  476 (523)
                      ++..+.++.   ...++++.|+++.++ ++.+++++|+++++|+..++.||.+++++.+.++|+++|+.+++.|...+||
T Consensus       367 ~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp  442 (487)
T COG1233         367 TFAQLVPVP---SLGDYDELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRP  442 (487)
T ss_pred             eeeeeeecC---cCCChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCC
Confidence            222233332   123456789999999 8899999999999999999999999999999999999999999999988888


Q ss_pred             CCCCCCCCCCCCCCCeEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q psy893          477 LPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM  521 (523)
Q Consensus       477 ~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~asG~~aA~~i~~~~  521 (523)
                      .      ..+|+++|||+||++||||+|+++++|..+|..++.+.
T Consensus       443 ~------~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~  481 (487)
T COG1233         443 P------PKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDL  481 (487)
T ss_pred             C------CCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhcc
Confidence            3      22689999999999999999999998888887776654

>PLN02612 phytoene desaturase

Probab=100.00  E-value=3.4e-32  Score=284.42  Aligned_cols=427  Identities=15%  Similarity=0.161  Sum_probs=253.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.|++....|   .++++||+... +++......
T Consensus       100 G~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~-~~~~~~~~~  178 (567)
T PLN02612        100 GAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR-LQWKEHSMI  178 (567)
T ss_pred             CCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc-ceecccceE
Confidence            89999999999999999999999999999999999864489999999998766555   57788887644 333221110


Q ss_pred             CcccCCCCcccCCCCce--eecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHH--HHHh
Q psy893           78 SYTPLSPDKWTNKAKSL--TLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMY--NLFT  153 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (523)
                       +......     +...  .++.           ..|....   .....+..          .+..++.+....  .+..
T Consensus       179 -~~~~~~~-----~~~~~~~~p~-----------~~P~~l~---~~~~~l~~----------~~~ls~~~kl~~~~~~~~  228 (567)
T PLN02612        179 -FAMPNKP-----GEFSRFDFPE-----------VLPAPLN---GIWAILRN----------NEMLTWPEKIKFAIGLLP  228 (567)
T ss_pred             -EEecCCC-----CceeeCcCch-----------hcCChhh---hhHHHHhc----------CccCCHHHHHHHHHhhhH
Confidence             1000000     1110  1110           0000000   00000000          000000000000  0000


Q ss_pred             c-cccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhhhccCCCCCCCcchHHHHHHHHhhcccCC-CCceeecCCCH-
Q psy893          154 R-RGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGV-KGAWAYPEGGM-  229 (523)
Q Consensus       154 ~-~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~gG~-  229 (523)
                      . .........+...|+.+|+++...++.+.. ++........+..|.+.++.+.+ ..+....... .....++.|+. 
T Consensus       229 ~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l-~~l~~~l~~~~gs~~~~~~G~~~  307 (567)
T PLN02612        229 AIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPP  307 (567)
T ss_pred             HhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHH-HHHHHHHhccCCceEeeecCCch
Confidence            0 000001112234689999998776665554 44433211112345454443322 2111111111 11233667765 


Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhc
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQS  308 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~  308 (523)
                      ..+++.|++.+++.|++|++|++|++|..++++++++|+ .+|+++.||+||+|+|+.. +..|+++...+..+.+++++
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~-l~~Ll~~~~~~~~~~~~l~~  386 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI-LKLLLPDQWKEIPYFKKLDK  386 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH-HHHhCcchhcCcHHHHHHHh
Confidence            689999999999999999999999999986546666777 7888999999999999876 46787754333356667777


Q ss_pred             CCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCC
Q psy893          309 IDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLS  388 (523)
Q Consensus       309 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~a  388 (523)
                      +.+ .++++|+++++++. +.         +. .|  +++  ..+             +    ...++...++. .+.++
T Consensus       387 l~~-~~v~~v~l~~dr~~-~~---------~~-~~--~~~--~~~-------------~----~~~~~~d~S~~-~~~~~  432 (567)
T PLN02612        387 LVG-VPVINVHIWFDRKL-KN---------TY-DH--LLF--SRS-------------P----LLSVYADMSTT-CKEYY  432 (567)
T ss_pred             cCC-CCeEEEEEEECccc-CC---------CC-Cc--eee--cCC-------------C----Cceeehhhhhc-chhhc
Confidence            664 47999999999763 21         11 12  332  111             0    01122222222 23456


Q ss_pred             CCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC------CC-eEEeEecChhhHHHhcCCCCCcc
Q psy893          389 PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT------QD-IVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       389 p~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~------~~-i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                      ++|++++.++.  .+.     .+|....++++.+.++++|++++|+..      .+ +.+..+.+|.++...  .+++. 
T Consensus       433 ~~~~~ll~~~~--~~a-----~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~-  502 (567)
T PLN02612        433 DPNKSMLELVF--APA-----EEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKT--VPNCE-  502 (567)
T ss_pred             CCCCeEEEEEE--EcC-----hhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEe--CCCCc-
Confidence            66776555332  221     356556789999999999999999762      23 334677888876321  11111 


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHhc
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~~  522 (523)
                                 ..+|       ..+||++||||||||+.++  +++.||  ||+.||++|+++++
T Consensus       503 -----------~~rp-------~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~  549 (567)
T PLN02612        503 -----------PCRP-------LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYE  549 (567)
T ss_pred             -----------ccCc-------cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence                       2356       5688999999999999764  467777  99999999999875

>PRK07233 hypothetical protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=277.60  Aligned_cols=415  Identities=20%  Similarity=0.211  Sum_probs=252.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||+.|+++|++|+|||+++++||+++++. .+|+.||.|.+++....+   .++++||++.. +.+..... 
T Consensus         6 GaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~-~~~~~~~~-   82 (434)
T PRK07233          6 GGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDK-LRWRETKT-   82 (434)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCc-eeeccCce-
Confidence            8999999999999999999999999999999999987 679999999888654444   57788877543 33322111 


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                        ...+.      +..+.+ .+...    +..+..-..      .+.+......+ .....                 . 
T Consensus        83 --~~~~~------~~~~~~-~~~~~----~~~~~~~~~------~~~~~~~~~~~-~~~~~-----------------~-  124 (434)
T PRK07233         83 --GYYVD------GKLYPL-GTPLE----LLRFPHLSL------IDKFRLGLLTL-LARRI-----------------K-  124 (434)
T ss_pred             --EEEEC------CeEecC-CCHHH----HHcCCCCCH------HHHHHhHHHHH-hhhhc-----------------c-
Confidence              01111      332221 12211    111111000      00000000000 00000                 0 


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHh--hcc--cCCCCceeecCCCHHHHH
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM--GGA--EGVKGAWAYPEGGMGAVS  233 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~g~~~~~~gG~~~l~  233 (523)
                        ........|+.+|+.+++.++.++.++...........+.+.++...+ ..+.  ...  ......+.+++||++.++
T Consensus       125 --~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~~l~  201 (434)
T PRK07233        125 --DWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLW-SRIKRRGNRRYSLFGEKLGYLEGGFATLI  201 (434)
T ss_pred             --cccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHH-HHHhhhhccccccCCceEeccCCCHHHHH
Confidence              000112357888998888766666666544331112455555544322 1111  000  000112458999999999


Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCC
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYAS  313 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  313 (523)
                      ++|++.+++.|++|+++++|++|..++ ++++.+..++++++||+||+|+++..+ .+|+++  +++...+.++++.+. 
T Consensus       202 ~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~~~~~~~~ad~vI~a~p~~~~-~~ll~~--~~~~~~~~~~~~~~~-  276 (434)
T PRK07233        202 DALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVEVDGEEEDFDAVISTAPPPIL-ARLVPD--LPADVLARLRRIDYQ-  276 (434)
T ss_pred             HHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEEeCCceEECCEEEECCCHHHH-HhhcCC--CcHHHHhhhcccCcc-
Confidence            999999999999999999999999887 666555566778999999999999885 577754  555666777887764 


Q ss_pred             CeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893          314 PVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH  393 (523)
Q Consensus       314 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~  393 (523)
                      +.+++++.++++..             ..+  +++. .+                 +..++..+..++..+|..+|+|++
T Consensus       277 ~~~~~~l~~~~~~~-------------~~~--~~~~-~~-----------------~~~~~~~~~~~s~~~~~~~~~g~~  323 (434)
T PRK07233        277 GVVCMVLKLRRPLT-------------DYY--WLNI-ND-----------------PGAPFGGVIEHTNLVPPERYGGEH  323 (434)
T ss_pred             ceEEEEEEecCCCC-------------CCc--eeee-cC-----------------CCCCcceEEEecccCCccccCCce
Confidence            67888999987531             111  3332 11                 012333344456678877878887


Q ss_pred             EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCC-CeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893          394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  472 (523)
Q Consensus       394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  472 (523)
                      ++.+.. +.+..    .++....++++.+++++.|++++|+++. .++...+..   +..  .   +..|.    +. ..
T Consensus       324 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r---~~~--a---~~~~~----~g-~~  385 (434)
T PRK07233        324 LVYLPK-YLPGD----HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR---APY--A---QPIYE----PG-YL  385 (434)
T ss_pred             EEEEee-ecCCC----ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE---ecc--c---ccccc----Cc-hh
Confidence            654332 22211    1122346789999999999999998853 455444321   110  0   01111    11 01


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEecCCCCC--CCCCCCCc--cHHHHHHHHHHHhc
Q psy893          473 FNRPLPIQGPSSPFTLIPHLLLCGSGAH--PGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~--pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ..+|       ..+++++|||+||+++.  ++.++.+|  ||..||++|+++++
T Consensus       386 ~~~~-------~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        386 DKIP-------PYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             hcCC-------CcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence            1233       45678999999999642  34578877  99999999999875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.97  E-value=9.1e-29  Score=244.52  Aligned_cols=411  Identities=18%  Similarity=0.168  Sum_probs=253.9

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh---hhhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR---PHIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~---~~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|++++  .+|+|||+.+++||.++|+. .+||.||.|++.+....   .+++++||+++. +.+-...
T Consensus         7 G~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~-l~~~~~~   84 (444)
T COG1232           7 GGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDK-LLWNSTA   84 (444)
T ss_pred             CCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHh-hccCCcc
Confidence            89999999999999999  99999999999999999997 89999999987754442   367889998866 3322111


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcC-CCChhhHHHHHHHhc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIA-PHDFGNLLMYNLFTR  154 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  154 (523)
                      ..   .++.     +|+.+.++...      +..+......       ........+..+...+ ..+            
T Consensus        85 ~~---~i~~-----~gkl~p~P~~~------i~~ip~~~~~-------~~~~~~~~~~~~~~~~~~~~------------  131 (444)
T COG1232          85 RK---YIYY-----DGKLHPIPTPT------ILGIPLLLLS-------SEAGLARALQEFIRPKSWEP------------  131 (444)
T ss_pred             cc---eEee-----CCcEEECCccc------eeecCCcccc-------chhHHHHHHHhhhcccCCCC------------
Confidence            11   1111     16666655442      1111111100       0001111111222111 010            


Q ss_pred             cccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH--HHHHhhcc-----------c----
Q psy893          155 RGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL--LHHVMGGA-----------E----  216 (523)
Q Consensus       155 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-----------~----  216 (523)
                               ....++.+|+.++|.++.+..++..... ++. .+.++.++...+  ........           .    
T Consensus       132 ---------~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~-~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~  201 (444)
T COG1232         132 ---------KQDISVGEFIRRRFGEEVVERFIEPLLEGIYA-GDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQS  201 (444)
T ss_pred             ---------CCCcCHHHHHHHHHhHHHHHHHHHHHhhchhc-CCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccc
Confidence                     0124778888888888777766654331 111 122332222111  00000000           0    


Q ss_pred             CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCC
Q psy893          217 GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKG  296 (523)
Q Consensus       217 ~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~  296 (523)
                      ...+.+.+++||+++|+++|++.++..   |+++++|++|..+. ...+.+..+|++++||.||+|+|++.+ ..|+++.
T Consensus       202 ~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~~~~~~~~g~~~~~D~VI~t~p~~~l-~~ll~~~  276 (444)
T COG1232         202 LKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AGKTIVDVGGEKITADGVISTAPLPEL-ARLLGDE  276 (444)
T ss_pred             cccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-CccEEEEcCCceEEcceEEEcCCHHHH-HHHcCCc
Confidence            012345688999999999999998865   99999999999985 434333378888999999999999995 6888762


Q ss_pred             CCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCC-eE
Q psy893          297 NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP-MI  375 (523)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~-~~  375 (523)
                          .....+.++.+. ++.+|.+++++....           ...+.+++++ .++                  .+ ..
T Consensus       277 ----~~~~~~~~~~~~-s~~~vv~~~~~~~~~-----------~~~~~~g~~i-ad~------------------~~~~~  321 (444)
T COG1232         277 ----AVSKAAKELQYT-SVVTVVVGLDEKDNP-----------ALPDGYGLLI-ADD------------------DPYIL  321 (444)
T ss_pred             ----chhhhhhhcccc-ceEEEEEEecccccc-----------CCCCceEEEE-ecC------------------CCcce
Confidence                234556666655 677778888875311           1223446776 332                  12 56


Q ss_pred             EEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcC
Q psy893          376 EMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG  455 (523)
Q Consensus       376 ~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~  455 (523)
                      .++++|+..|...|+|++++.+... .+..    ..-.....|++.+.+++.|.++++...+.+ ...+..   |.  ..
T Consensus       322 a~~~~S~~~p~~~p~g~~ll~~~~~-~~g~----~~~~~~~dee~~~~~l~~L~~~~~~~~~~~-~~~v~r---~~--~~  390 (444)
T COG1232         322 AITFHSNKWPHEAPEGKTLLRVEFG-GPGD----ESVSTMSDEELVAAVLDDLKKLGGINGDPV-FVEVTR---WK--YA  390 (444)
T ss_pred             eEEEecccCCCCCCCCcEEEEEEee-cCCC----cchhccCHHHHHHHHHHHHHHHcCcCcchh-heeeee---cc--cc
Confidence            7888999999999999998887753 2221    111234568999999999999997555443 222221   11  23


Q ss_pred             CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHH
Q psy893          456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~  519 (523)
                      .|+..+.+.    ++....|.       ...+..+|++.+|.|- .|.|++.|  +|+.||+++++
T Consensus       391 ~PqY~vG~~----~~~~~ir~-------~l~~~y~gi~~~G~~~-~g~g~~d~I~~g~~aa~~l~~  444 (444)
T COG1232         391 MPQYEVGHL----DRLEPIRA-------ALKGAYPGIKSVGRYG-EGVGLPDCIAAGKEAAEQLLS  444 (444)
T ss_pred             CCccchhHH----HHHHHHHH-------hhccccCCeEEeccCC-CCCCchHHHHHHHHHHHHhhC
Confidence            343333222    11111222       2333448999999996 44789987  99999998863

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.97  E-value=5.3e-28  Score=249.27  Aligned_cols=421  Identities=18%  Similarity=0.197  Sum_probs=233.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.+++....|   .++++||+... +.+..... 
T Consensus         6 GaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~-~~~~~~~~-   83 (453)
T TIGR02731         6 GAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR-LQWKSHSM-   83 (453)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc-eeecCCce-
Confidence            89999999999999999999999999999999998753579999999988665555   46677776543 32222111 


Q ss_pred             CcccCCCCcccCCCCce--eec---CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           78 SYTPLSPDKWTNKAKSL--TLG---LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                      .+.....+     +...  .++   .........+ +..+.        ....+++.-.. .+..            ...
T Consensus        84 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~------------~~~  136 (453)
T TIGR02731        84 IFNQPDKP-----GTFSRFDFPDIPAPFNGVAAIL-RNNDM--------LTWPEKIKFAI-GLLP------------AIV  136 (453)
T ss_pred             EEecCCCC-----cceeeccCCCCCCCHHHHHHHh-cCcCC--------CCHHHHHHHHH-HhHH------------HHh
Confidence            01000000     1111  111   0000000000 00000        00000000000 0000            000


Q ss_pred             hccccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCc-eeecCCC-H
Q psy893          153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGA-WAYPEGG-M  229 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~gG-~  229 (523)
                      .   .......+...|+.+|+++...++.+.. ++......-....|.+.++.+.+ ..+........+. ..+..|+ +
T Consensus       137 ~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~-~~l~~~~~~~~g~~~~~~~g~~~  212 (453)
T TIGR02731       137 R---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVL-TALNRFLQERHGSKMAFLDGAPP  212 (453)
T ss_pred             c---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHhcCCCCeeEeecCCCh
Confidence            0   0001112245789999998766666554 33322211111345544443332 1111101111121 1234444 5


Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-----EEEcCEEEEcCChHHHHHhhCCCCCCCHHHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-----EIKAKYVLSNTTAKCTLLDLIPKGNLDERTT  303 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-----~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~  303 (523)
                      +.+++.|.+.+++.|++|++|++|++|..++++++++|+ .+|+     ++.||.||+|+++.. +.+|++...-...+.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~~~~  291 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQMPFF  291 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcCHHH
Confidence            789999999999999999999999999875536677787 5665     789999999999987 578886532123466


Q ss_pred             HHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q psy893          304 QAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL  383 (523)
Q Consensus       304 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~  383 (523)
                      +.++++.+ .+++++++.++++..            ..  .++++. ..+.                  ..+.....+..
T Consensus       292 ~~~~~~~~-~~~~~v~l~~~~~~~------------~~--~~~~~~-~~~~------------------~~~~~~~s~~~  337 (453)
T TIGR02731       292 QKLNGLEG-VPVINVHIWFDRKLT------------TV--DHLLFS-RSPL------------------LSVYADMSETC  337 (453)
T ss_pred             HHhhcCCC-CcEEEEEEEEccccC------------CC--Cceeee-CCCc------------------ceeecchhhhC
Confidence            67777764 478999999997531            01  112221 1110                  00000011111


Q ss_pred             CCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-----C-CeEEeEecChhhHHHhcCCC
Q psy893          384 DNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-----Q-DIVGYEILTPPDLEKEFGLT  457 (523)
Q Consensus       384 d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-----~-~i~~~~~~tP~~~~~~~~~~  457 (523)
                       ...++++++++.+++.  ..     ..|....++++.+.++++|++++|+..     . .+.+.++..|.+.  +.   
T Consensus       338 -~~~~~~~~~l~~~~~~--~~-----~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~---  404 (453)
T TIGR02731       338 -KEYADPDKSMLELVFA--PA-----ADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK---  404 (453)
T ss_pred             -hhhcCCCCeEEEEEec--Ch-----hhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec---
Confidence             1233455565554331  11     133345779999999999999998521     1 2444555565541  11   


Q ss_pred             CCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893          458 GGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN  518 (523)
Q Consensus       458 ~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~  518 (523)
                              ..+.+ ...+|       ..++|++||||||+++..+  +++.+|  ||..||++|+
T Consensus       405 --------~~pg~-~~~~~-------~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       405 --------TTPGR-QQYRP-------HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             --------cCCCC-hhhCc-------cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence                    01111 11234       5678899999999998422  367777  9999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.97  E-value=2.9e-28  Score=250.28  Aligned_cols=441  Identities=16%  Similarity=0.164  Sum_probs=234.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||+.|+++|++|+|+|+++++||+++++...+|+.+|.|.|++....+   .+++++|+.+. +.+...   
T Consensus         6 G~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~---   81 (474)
T TIGR02732         6 GAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDN-LLLKEH---   81 (474)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccc-cccccc---
Confidence            89999999999999999999999999999999999754679999999998765555   45666776543 221110   


Q ss_pred             CcccCCCCcccCCCCceeec-----CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           78 SYTPLSPDKWTNKAKSLTLG-----LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                       ...+...    ++....+.     ..+-.....+.+...         +....++..... ....+   ..    ..+.
T Consensus        82 -~~~~~~~----~~~~~~~~~~~~~~~P~~~~~~~l~~~~---------ls~~dklr~~~~-~~~~~---~~----~~~~  139 (474)
T TIGR02732        82 -THTFVNK----GGDIGELDFRFATGAPFNGLKAFFTTSQ---------LKWVDKLRNALA-LGTSP---IV----RGLV  139 (474)
T ss_pred             -eeEEEcC----CCcccccccCCCCCCchhhhHHHhcCCC---------CCHHHHHHHHHH-hhhhH---HH----hhcc
Confidence             0000000    01110000     000000011111000         001111100000 00000   00    0000


Q ss_pred             hccccHHHHHHHHhhcHHHHHHhhcCChH-HHHHHhhhhhccCCCCCCCcchHHHHH-HHHhhcccCCCCceeecCCCHH
Q psy893          153 TRRGEMKDVYSLLTCSAFSILNDWFESEP-LKATLLTDGLIGAMVSPHSPSTSYVLL-HHVMGGAEGVKGAWAYPEGGMG  230 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~gG~~  230 (523)
                      ........+......|+.+|++++..++. ++.++...+.-.....+++.++.+.+. .+.+.. ........+++||..
T Consensus       140 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~  218 (474)
T TIGR02732       140 DYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPD  218 (474)
T ss_pred             ccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcc
Confidence            00000011112234799999999998876 555555443211123455554443322 112221 112223347888877


Q ss_pred             H-HHHHHHHHHHHCCcEEEeCceeeEEEECC--CC--CeEEEE-eCC---eEEEcCEEEEcCChHHHHHhhCCCCCCCHH
Q psy893          231 A-VSQALARSAQASGAQLFTSQTVTEITLDS--DK--RASGVV-TNG---LEIKAKYVLSNTTAKCTLLDLIPKGNLDER  301 (523)
Q Consensus       231 ~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~~~~v~-~~g---~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~  301 (523)
                      . +.+.|.+.+++.|++|+++++|++|+.++  ++  ++++|+ .+|   +++.||+||+|++++.+ .+|+++..-...
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~-~~Ll~~~~~~~~  297 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI-KRLLPQEWRQFE  297 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH-HhhCChhhhcCH
Confidence            6 66779999999999999999999999854  12  366766 444   56899999999999985 689875311123


Q ss_pred             HHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceE--EeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy893          302 TTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSI--HLNCEDMQQVFDAYQDATQGIPSTRPMIEMVL  379 (523)
Q Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~  379 (523)
                      ..+.+.++.+. ++++|++.++++...   +.     +.... ..+  ..+.+++-     |  +  +   ...+.+...
T Consensus       298 ~~~~l~~l~~~-pi~~v~l~~~~~v~~---~~-----~~~~~-~~l~~~~~~~~~~-----~--~--~---~~~~~~~~~  355 (474)
T TIGR02732       298 EFDNIYKLDAV-PVATVQLRYDGWVTE---LQ-----DLAKR-KQLKRAAGLDNLL-----Y--T--A---DADFSCFAD  355 (474)
T ss_pred             HHhhHhcCCCC-CeEEEEEEecccccc---cc-----chhhh-hcccccccccccc-----c--c--c---Cccceeeeh
Confidence            56677777764 789999999865321   10     00000 000  00000000     0  0  0   000011100


Q ss_pred             CCCCCC-CCCCCCce-EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC-eEEeEecChhhHHHhcCC
Q psy893          380 PSSLDN-TLSPPGHH-VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLEKEFGL  456 (523)
Q Consensus       380 ~s~~d~-~~ap~G~~-~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tP~~~~~~~~~  456 (523)
                      -+...+ .+.++|.. ++.+++.  +   .  .++.+..++++.++++++|++++|.+++. ++...+..   +.+    
T Consensus       356 ~~~~~~~~~~~~~~~~~l~~~~~--~---~--~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~---~~~----  421 (474)
T TIGR02732       356 LALTSPDDYYKEGQGSLLQCVLT--P---G--DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVK---LAQ----  421 (474)
T ss_pred             hhccCHHHHhccCCCeEEEEEEe--C---h--hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEE---ecC----
Confidence            000112 12333333 2333321  1   0  12333466899999999999999987543 44322221   110    


Q ss_pred             CCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893          457 TGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN  518 (523)
Q Consensus       457 ~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~  518 (523)
                         ++|...+..   ...||       +.+|+++|||+||||+..+  .++.+|  ||+.||++|+
T Consensus       422 ---a~~~~~pg~---~~~~P-------~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       422 ---SLYREAPGM---DPFRP-------DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             ---ceeccCCCC---cccCC-------CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence               122111111   12456       7899999999999999653  234455  9999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.97  E-value=3.2e-28  Score=251.60  Aligned_cols=417  Identities=16%  Similarity=0.142  Sum_probs=237.9

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||+.|+++|  ++|+|||+++++||+++|.. .+|+.+|.|++++....+   .++++||++.. +... ..
T Consensus         7 GaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~~~-~~   83 (451)
T PRK11883          7 GGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDE-LVAN-TT   83 (451)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCccc-eecC-CC
Confidence            89999999999999988  89999999999999999987 689999999987544443   56777776532 1110 01


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHH--HHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHh
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF--EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFT  153 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (523)
                      ...  .++.     +|+.+.++.+.      +..+ +.....+  .+++....++.... .+ ...  .           
T Consensus        84 ~~~--~~~~-----~g~~~~~p~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~-----------  134 (451)
T PRK11883         84 GQS--YIYV-----NGKLHPIPPGT------VMGI-PTSIAPFLFAGLVSPIGKLRAAA-DL-RPP--R-----------  134 (451)
T ss_pred             Ccc--eEEE-----CCeEEECCCCC------eecc-CCCchhhhcCCCCCHHHHHHhhC-cc-cCC--C-----------
Confidence            111  1111     14433333210      0000 0000000  00111111111000 00 000  0           


Q ss_pred             ccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHH---HHHH----------hhccc----
Q psy893          154 RRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHV----------MGGAE----  216 (523)
Q Consensus       154 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~----  216 (523)
                       ..      .....|+.+|+.+.+.+..++.++...........+.+.++.+.+   ....          .....    
T Consensus       135 -~~------~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (451)
T PRK11883        135 -WK------PGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK  207 (451)
T ss_pred             -CC------CCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence             00      001257888888877766666665543321111234444332221   1110          00000    


Q ss_pred             CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          217 GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       217 ~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      .....+.+++||++.+++.|++.+...  +|+++++|++|..++ +++ .|. .+|+++.||+||+|+|+..+ .+++.+
T Consensus       208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~vI~a~p~~~~-~~l~~~  282 (451)
T PRK11883        208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DGY-EIVLSNGGEIEADAVIVAVPHPVL-PSLFVA  282 (451)
T ss_pred             CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECCCHHHH-HHhccC
Confidence            012234478999999999999987543  899999999999887 544 466 78888999999999999986 566543


Q ss_pred             CCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeE
Q psy893          296 GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMI  375 (523)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  375 (523)
                          +...+.++++.+. ++.+|++.++++..+           .+ +...+++ ..+                ...+..
T Consensus       283 ----~~~~~~~~~~~~~-~~~~v~l~~~~~~~~-----------~~-~~~~~~~-~~~----------------~~~~~~  328 (451)
T PRK11883        283 ----PPAFALFKTIPST-SVATVALAFPESATN-----------LP-DGTGFLV-ARN----------------SDYTIT  328 (451)
T ss_pred             ----hhHHHHHhCCCCC-ceEEEEEEeccccCC-----------CC-CceEEEe-cCC----------------CCCcEE
Confidence                2345677788776 677999999865211           01 1113444 211                012444


Q ss_pred             EEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcC
Q psy893          376 EMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG  455 (523)
Q Consensus       376 ~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~  455 (523)
                      .+.+++..+|..+|+|..++.++.. .+.   . ....+..++++.+.+++.|+++++ +....+...+.   +|..-+.
T Consensus       329 ~~~~~s~~~~~~~p~g~~~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~L~~~~g-~~~~~~~~~~~---rw~~a~p  399 (451)
T PRK11883        329 ACTWTSKKWPHTTPEGKVLLRLYVG-RPG---D-EAVVDATDEELVAFVLADLSKVMG-ITGDPEFTIVQ---RWKEAMP  399 (451)
T ss_pred             EEEeEcCcCCCCCCCCcEEEEEecC-CCC---C-chhccCCHHHHHHHHHHHHHHHhC-CCCCceEEEEe---ecCccCC
Confidence            5656677778888988876655432 221   1 111123568999999999999974 43333333332   2322111


Q ss_pred             CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHH
Q psy893          456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~  519 (523)
                           .|+... ..+....++       .... ++|||++|+|+. |.|+++|  ||+.||++|++
T Consensus       400 -----~~~~~~-~~~~~~l~~-------~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~  450 (451)
T PRK11883        400 -----QYGVGH-IERVAELRA-------GLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA  450 (451)
T ss_pred             -----CCCccH-HHHHHHHHH-------hhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence                 121111 111111122       2222 679999999986 6789987  99999999986

>PLN02487 zeta-carotene desaturase

Probab=99.97  E-value=9.6e-28  Score=247.72  Aligned_cols=439  Identities=14%  Similarity=0.115  Sum_probs=241.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||++|+.|+++|++|+|+|+++.+||+++++...+|+.+|.|.|++....+   .++++||+++. +.+.  +  
T Consensus        82 G~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~-~~~~--~--  156 (569)
T PLN02487         82 GAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADEN-LLVK--D--  156 (569)
T ss_pred             CCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccc-cccc--c--
Confidence            89999999999999999999999999999999999854579999999988655444   56777877543 2221  1  


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH-----
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF-----  152 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  152 (523)
                      ....+...    ++..-.+..          .+ +....     +.       .+..++..+..++.+.++....     
T Consensus       157 ~~~~~~~~----~g~~~~~~~----------~~-p~~~p-----l~-------~~~~~l~~~~Ls~~dklr~~~~l~~~~  209 (569)
T PLN02487        157 HTHTFVNK----GGDVGELDF----------RF-PVGAP-----LH-------GIKAFLTTNQLEPYDKARNALALATSP  209 (569)
T ss_pred             cceeEEec----CCEEeeecc----------CC-CCCch-----hh-------hHHHHHcCCCCCHHHHHhhcccccccc
Confidence            11101000    011100000          00 00000     00       0001111111111111000000     


Q ss_pred             --h---ccc-cHHHHHHHHhhcHHHHHHhhcCCh-HHHHHHhhhhhccCCCCCCCcchHHHHHHH-HhhcccCCCCceee
Q psy893          153 --T---RRG-EMKDVYSLLTCSAFSILNDWFESE-PLKATLLTDGLIGAMVSPHSPSTSYVLLHH-VMGGAEGVKGAWAY  224 (523)
Q Consensus       153 --~---~~~-~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~  224 (523)
                        .   ... .+..+......|+.+|+.++..++ .++.++...+.......+++.++.+.+... .+. .....+...+
T Consensus       210 ~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~  288 (569)
T PLN02487        210 VVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRM  288 (569)
T ss_pred             hhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeee
Confidence              0   000 000111123479999999999887 456666554432222344555444332111 111 1112232358


Q ss_pred             cCCCHHH-HHHHHHHHHHHCCcEEEeCceeeEEEECCC--C--CeEEEE-e-C--CeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          225 PEGGMGA-VSQALARSAQASGAQLFTSQTVTEITLDSD--K--RASGVV-T-N--GLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       225 ~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~--~~~~v~-~-~--g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      ++||... |++.+++.|+++|++|+++++|++|+.+++  +  ++++|+ . +  ++++.||.||+|++++.+ .+|+++
T Consensus       289 ~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~-~~Llp~  367 (569)
T PLN02487        289 LKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGI-KRLLPE  367 (569)
T ss_pred             cCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHH-HHhCCc
Confidence            9999995 999999999999999999999999999731  2  367777 3 3  346889999999999974 789976


Q ss_pred             CCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCC-CCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q psy893          296 GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSEN-TVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPM  374 (523)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  374 (523)
                      ..-.....+.+.++.+ .++++|++.++++...   +..... .++..     +.+.+++      + ..  + .+.-++
T Consensus       368 ~~~~~~~~~~l~~L~~-~pi~tv~L~~d~~v~~---~~~~~~~r~l~~-----~~g~~~~------~-~~--~-~~~~~f  428 (569)
T PLN02487        368 QWREYEFFDNIYKLVG-VPVVTVQLRYNGWVTE---MQDLELSRQLRR-----AAGLDNL------L-YS--A-DADFSC  428 (569)
T ss_pred             hhhccHHHhHHhcCCC-eeEEEEEEEecccccc---cccccccccccc-----ccccccc------c-cc--c-CCCcce
Confidence            4111223566777755 4788999999875421   100000 00000     0000100      0 00  0 000011


Q ss_pred             EEE-EcCCCCCCCCC-CCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC-eEEeEecChhhHH
Q psy893          375 IEM-VLPSSLDNTLS-PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLE  451 (523)
Q Consensus       375 ~~v-~~~s~~d~~~a-p~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tP~~~~  451 (523)
                      +.. ..-+..+ ... .+| +.+.+++.  +.     +++.+..+++++++++++|.+++|.+++. +....+..   +.
T Consensus       429 ~~di~l~~~~~-~~~~~~g-~~l~~vis--~a-----~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~---~~  496 (569)
T PLN02487        429 FADLALTSPED-YYKEGEG-SLIQAVLT--PG-----DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVK---IG  496 (569)
T ss_pred             EeeeecCCHHH-HcccCCc-eEEEEEEc--CC-----ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEE---cc
Confidence            111 1000000 011 123 33444431  11     23444567999999999999999998643 55433331   11


Q ss_pred             HhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHh
Q psy893          452 KEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       452 ~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~  521 (523)
                      +       ++|...  +.+ ...||       +.+|+++|||+||||+..+  ..+.+|  ||..||+.|++..
T Consensus       497 ~-------at~~~~--pg~-~~~RP-------~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        497 Q-------SLYREA--PGM-DPFRP-------DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             C-------ceeccC--CCc-cccCC-------CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            1       122211  111 12467       7899999999999999654  133355  9999999998864

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.96  E-value=7.2e-28  Score=249.41  Aligned_cols=416  Identities=15%  Similarity=0.185  Sum_probs=245.3

Q ss_pred             CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEee
Q psy893            1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLT   73 (523)
Q Consensus         1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~   73 (523)
                      |||++||+||++|+++    |++|+|||+++++||+++|.+ .+|+.+|.|++++....+   .+++++|++.. +..  
T Consensus         9 GaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~-~~~--   84 (462)
T TIGR00562         9 GGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEHV-LVS--   84 (462)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCcc-ccc--
Confidence            8999999999999999    999999999999999999987 789999999998776655   46667776543 111  


Q ss_pred             cCCCCcccC-CCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           74 RDPRSYTPL-SPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        74 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                       .+.....+ ...     |+.+.++..+..    +.....         .....++...+..+....             
T Consensus        85 -~~~~~~~~~~~~-----g~~~~~p~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~~-------------  132 (462)
T TIGR00562        85 -DATGQRYVLVNR-----GKLMPVPTKIAP----FVKTGL---------FSLGGKLRAGMDFIRPAS-------------  132 (462)
T ss_pred             -CCCCceEEEECC-----CceecCCCChHH----HhcCCC---------CCchhhHHhhhhhccCCC-------------
Confidence             11100000 010     333333322111    000000         000001110000010000             


Q ss_pred             hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchHHHH--HHHH-----------hhcc---
Q psy893          153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTSYVL--LHHV-----------MGGA---  215 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-----------~~~~---  215 (523)
                         .       ....|+.+|+.+.+.++..+.++..... +.+ ..+.+.++.+.+  +...           ....   
T Consensus       133 ---~-------~~d~s~~e~l~~~~g~~~~~~~~~p~~~-~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  201 (462)
T TIGR00562       133 ---P-------GKDESVEEFVRRRFGDEVVENLIEPLLS-GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLP  201 (462)
T ss_pred             ---C-------CCCcCHHHHHHHhcCHHHHHHHHHHHhc-ccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccC
Confidence               0       0125778888888776666665554332 111 233333333221  1100           0000   


Q ss_pred             ------cC--CCCc-eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          216 ------EG--VKGA-WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       216 ------~~--~~g~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                            .+  ..+. +..+.||+++|++.|++.+..  ++|+++++|++|..++ +++ .|+ .+|+++.||+||+|+|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       202 QGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRG-SNY-TLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             ccccccccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecC-CcE-EEEECCCcEEEcCEEEECCCH
Confidence                  00  0121 346899999999999998852  7899999999999876 554 466 67778999999999999


Q ss_pred             HHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhh
Q psy893          286 KCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDAT  365 (523)
Q Consensus       286 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  365 (523)
                      ..+ ..|+++  +++...+.++++.+. ++.++.+.++++. |.        .+.   .++.++..++ +          
T Consensus       278 ~~~-~~ll~~--~~~~~~~~l~~l~~~-~~~~v~l~~~~~~-~~--------~~~---~~~g~l~~~~-~----------  330 (462)
T TIGR00562       278 KAA-AGLLSE--LSNSASSHLDKIHSP-PVANVNLGFPEGS-VD--------GEL---EGFGFLISRS-S----------  330 (462)
T ss_pred             HHH-HHHhcc--cCHHHHHHHhcCCCC-ceEEEEEEEchHH-cC--------CCC---CceEEEccCC-C----------
Confidence            986 678764  566788889988886 7888999987532 21        011   1233331211 0          


Q ss_pred             cCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEec
Q psy893          366 QGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL  445 (523)
Q Consensus       366 ~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~  445 (523)
                           ..+.+.+.+.|...|.++|+|+.++++++. ...    ..++.+..++++.+.+++.|.++++ +...++...+.
T Consensus       331 -----~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~-g~~----~~~~~~~~~ee~~~~v~~~L~~~~g-i~~~p~~~~v~  399 (462)
T TIGR00562       331 -----KFAILGCIFTSKLFPNRAPPGKTLLTAYIG-GAT----DESIVDLSENEIINIVLRDLKKVLN-INNEPEMLCVT  399 (462)
T ss_pred             -----CCceEEEEEEccccCCcCCCCcEEEEEEeC-CCC----CccccCCCHHHHHHHHHHHHHHHhC-CCCCCcEEEEe
Confidence                 013344555666778888999887766653 111    1233344668899999999999984 54434433332


Q ss_pred             ChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          446 TPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       446 tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                         .|..  ..|..++.+ ...+.++   ++       ...++.+|||+||+|. -|.|+++|  ||+.+|++|++.+.
T Consensus       400 ---rw~~--a~P~~~~g~-~~~~~~i---~~-------~l~~~~~~l~l~G~~~-~g~~i~~~i~sg~~~a~~~~~~~~  461 (462)
T TIGR00562       400 ---RWHR--AIPQYHVGH-DQRLKEA---RE-------LLESAYPGVFLTGNSF-EGVGIPDCIDQGKAAASDVLTFLF  461 (462)
T ss_pred             ---Eccc--cCCCCCCCh-HHHHHHH---HH-------HHHhhCCCEEEecccc-CCCcHHHHHHHHHHHHHHHHHhhc
Confidence               2321  222222211 0011111   11       1123457999999997 46789987  99999999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.96  E-value=4.4e-27  Score=243.17  Aligned_cols=421  Identities=15%  Similarity=0.178  Sum_probs=237.8

Q ss_pred             CCChhHHHHHHHHHHc------CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceE
Q psy893            1 EAGHNGLVSAAYLARA------GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKL   71 (523)
Q Consensus         1 GaG~~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~   71 (523)
                      |||++||+||+.|+++      |++|+|||+++++||+++|.+ .+|+.+|.|++++....+   .++++||++.. +.+
T Consensus         8 GaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~-~~~   85 (463)
T PRK12416          8 GGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLEEE-MVY   85 (463)
T ss_pred             CCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCccc-eec
Confidence            8999999999999986      379999999999999999997 689999999998765555   56778887643 111


Q ss_pred             eecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHH--HHHHHHHHHHhHHHhhhhcCCCChhhHHHH
Q psy893           72 LTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE--KYDHHIEEITNLLDPLFDIAPHDFGNLLMY  149 (523)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (523)
                      .. ....+. +..      +....++.+.      +..+ |.....+.  .++....++ +.+..++.... ..      
T Consensus        86 ~~-~~~~~~-~~~------~~~~~~p~~~------~~~~-p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------  142 (463)
T PRK12416         86 NE-TGISYI-YSD------NTLHPIPSDT------IFGI-PMSVESLFSSTLVSTKGKI-VALKDFITKNK-EF------  142 (463)
T ss_pred             CC-CCceEE-EEC------CeEEECCCCC------eecC-CCChHHhhcCCcCCHHHHH-HhhhhhccCCC-CC------
Confidence            11 111110 001      2222222110      0000 00000000  000000010 01111111000 00      


Q ss_pred             HHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH---HHHH------hhcc----
Q psy893          150 NLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL---LHHV------MGGA----  215 (523)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~------~~~~----  215 (523)
                                    ....|+.+|+++.+.++..+.++..... +.. ..+.+.+....+   ....      ...+    
T Consensus       143 --------------~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~  207 (463)
T PRK12416        143 --------------TKDTSLALFLESFLGKELVERQIAPVLSGVYS-GKLNELTMASTLPYLLDYKNKYGSIIKGFEENK  207 (463)
T ss_pred             --------------CCCCCHHHHHHHhcCHHHHHHHHHHHhccccc-CCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence                          0135788888888776666666554432 111 234444332211   1110      0000    


Q ss_pred             c----CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH
Q psy893          216 E----GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL  290 (523)
Q Consensus       216 ~----~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~  290 (523)
                      .    .....+.+++||+++|+++|++.+++  ++|++|++|++|+.++ +++ .|+ .+|+++.||+||+|+|+..+ .
T Consensus       208 ~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p~~~~-~  282 (463)
T PRK12416        208 KQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAPHDIA-E  282 (463)
T ss_pred             hccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCCHHHH-H
Confidence            0    01112347899999999999998865  6899999999999887 554 466 67778999999999998885 6


Q ss_pred             hhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCC
Q psy893          291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPS  370 (523)
Q Consensus       291 ~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~  370 (523)
                      +|++++.    ....++++.+. ++.+|+++++++...  .         +. .+..++.+++             .   
T Consensus       283 ~ll~~~~----l~~~~~~~~~~-~~~~v~l~~~~~~~~--~---------~~-~g~G~l~~~~-------------~---  329 (463)
T PRK12416        283 TLLQSNE----LNEQFHTFKNS-SLISIYLGFDILDEQ--L---------PA-DGTGFIVTEN-------------S---  329 (463)
T ss_pred             hhcCCcc----hhHHHhcCCCC-ceEEEEEEechhhcC--C---------CC-CceEEEeeCC-------------C---
Confidence            7876533    33455666654 889999999864311  0         11 1122331221             0   


Q ss_pred             CCCeEEEEcCCCCCCCCCCCCceEEEEEecc-cccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhh
Q psy893          371 TRPMIEMVLPSSLDNTLSPPGHHVCLLFTQF-TPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPD  449 (523)
Q Consensus       371 ~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~-~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~  449 (523)
                      ......+.++|...+..+|++..++.+++.. .+.    .+++.+..++++.+.++++|++++ ++..+.+...+.   .
T Consensus       330 ~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~dee~~~~~~~~L~~~l-G~~~~p~~~~v~---~  401 (463)
T PRK12416        330 DLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPV----YETIKNYSEEELVRVALYDIEKSL-GIKGEPEVVEVT---N  401 (463)
T ss_pred             CCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCC----chhhhcCCHHHHHHHHHHHHHHHh-CCCCCceEEEEE---E
Confidence            0012234455555566666666655555421 111    112333356899999999999998 454444443332   2


Q ss_pred             HHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHh
Q psy893          450 LEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       450 ~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~  521 (523)
                      |..  ..|++.+.+.. ...++   ++       ..+.+.+|||++|++. -|.|+++|  ||+.||++|++.+
T Consensus       402 W~~--a~P~y~~~~~~-~~~~~---~~-------~l~~~~~~l~~aG~~~-~g~~i~~ai~sg~~aA~~i~~~~  461 (463)
T PRK12416        402 WKD--LMPKYHLEHNQ-AVQSL---QE-------KMMNLYPNIYLAGASY-YGVGIGACIGNGKNTANEIIATL  461 (463)
T ss_pred             ccc--cCCCcCcCHHH-HHHHH---HH-------HHHhhCCCeEEecccc-ccccHHHHHHHHHHHHHHHHHHh
Confidence            332  23443322211 11111   11       1223458999999996 46789987  9999999999875

>PRK07208 hypothetical protein; Provisional

Probab=99.95  E-value=7.7e-26  Score=235.01  Aligned_cols=414  Identities=15%  Similarity=0.172  Sum_probs=236.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++....+   .++++++..+. +  ......
T Consensus        11 GaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~-~--~~~~~~   86 (479)
T PRK07208         11 GAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDD-F--LLRPRL   86 (479)
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCc-c--cccccc
Confidence            8999999999999999999999999999999999987 689999999988655554   45666654221 1  111111


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      .. .++.      |+.+.++.+..   ..+..+..         ...+...    ..++......            .  
T Consensus        87 ~~-~~~~------g~~~~~p~~~~---~~l~~~~~---------~~~~~~~----~~~~~~~~~~------------~--  129 (479)
T PRK07208         87 SR-IYYR------GKFFDYPLKAF---DALKNLGL---------WRTAKCG----ASYLKARLRP------------R--  129 (479)
T ss_pred             ce-EEEC------CEEecCCcchh---HHHHhCCH---------hHHHHHH----HHHHHHhcCC------------C--
Confidence            00 0111      34333332211   11111100         0000000    0111100000            0  


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchHHHH-----------HHHHhhc-----------
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTSYVL-----------LHHVMGG-----------  214 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~-----------  214 (523)
                            ....|+.+|+.+.+.++..+.++...+. +.. ..|.+.+..+.+           +...+..           
T Consensus       130 ------~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
T PRK07208        130 ------KEEDSFEDWVINRFGRRLYSTFFKGYTEKVWG-VPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEV  202 (479)
T ss_pred             ------CCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhC-CChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCc
Confidence                  0125778888877777666666655432 111 344444333211           1000100           


Q ss_pred             ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCC-eEEEE-e--CCe--EEEcCEEEEcCChHHH
Q psy893          215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR-ASGVV-T--NGL--EIKAKYVLSNTTAKCT  288 (523)
Q Consensus       215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~-~~~v~-~--~g~--~~~ad~vI~a~~~~~~  288 (523)
                      .......+.+|+||++.|+++|++.+++.|++|++|++|++|..++ ++ ++.+. .  +|+  ++.||+||+|+|+..+
T Consensus       203 ~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l  281 (479)
T PRK07208        203 ETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPLREL  281 (479)
T ss_pred             cccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence            0001123458899999999999999999999999999999999987 44 43444 2  353  6899999999999986


Q ss_pred             HHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCC
Q psy893          289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGI  368 (523)
Q Consensus       289 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~  368 (523)
                      . +++.+ .+++...+.++++.+. ++.+++++++++..            .+.+  ++++ .+.             + 
T Consensus       282 ~-~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~------------~~~~--~~~~-~~~-------------~-  329 (479)
T PRK07208        282 V-AALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNL------------FPDN--WIYI-HDP-------------D-  329 (479)
T ss_pred             H-HhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCC------------CCCc--eEEe-cCC-------------C-
Confidence            4 56653 3666777778888776 68899999987531            1222  5555 221             0 


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCeEEeEecCh
Q psy893          369 PSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEILTP  447 (523)
Q Consensus       369 ~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tP  447 (523)
                         .+.-.+..++..+|..+|+|+++ .+...+..+  ....-| +..++++.++++++|.++.+ + .+.++...+.. 
T Consensus       330 ---~~~~r~~~~~~~~~~~~p~g~~~-~l~~~~~~~--~~~~~~-~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r-  400 (479)
T PRK07208        330 ---VKVGRLQNFNNWSPYLVPDGRDT-WLGLEYFCF--EGDDLW-NMSDEDLIALAIQELARLGL-IRPADVEDGFVVR-  400 (479)
T ss_pred             ---CccceecccccCCcccCCCCCce-EEEEEEEcc--CCCccc-cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEE-
Confidence               01112344556678889999862 222111111  111234 23568899999999999744 3 44555443321 


Q ss_pred             hhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-CCCCCc--cHHHHHHHHHHH
Q psy893          448 PDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-GGVCGA--PGYIAAQMVNRL  520 (523)
Q Consensus       448 ~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~g~~~a--sG~~aA~~i~~~  520 (523)
                        ++.  ..|.....+. ......   +        ...++.+|||++|...... ..+.+|  ||..||+.|++.
T Consensus       401 --~~~--a~P~y~~~~~-~~~~~~---~--------~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~  460 (479)
T PRK07208        401 --VPK--AYPVYDGTYE-RNVEII---R--------DLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG  460 (479)
T ss_pred             --ecC--cccCCCchHH-HHHHHH---H--------HHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence              211  1111111110 111111   1        1124679999999765222 234455  999999998764

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.95  E-value=1.4e-25  Score=229.78  Aligned_cols=400  Identities=18%  Similarity=0.183  Sum_probs=219.3

Q ss_pred             HHHHHHHHcCCcEEEEccCCCCCcceeeecccCCce--eccchhhhhhhhh---hhhccccccccCceEeecCCCCcccC
Q psy893            8 VSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ--FSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPRSYTPL   82 (523)
Q Consensus         8 ~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~--~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~~~~~~   82 (523)
                      +||++|+++|++|+|||+++++||+++|++ .+||.  +|.|++++....+   +++++||++.. +.. ...  .+...
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~~-~~~--~~~~~   75 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPR-LQG-PRL--PLPFY   75 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchh-hhc-ccC--Cccee
Confidence            589999999999999999999999999997 67654  9999988765444   57777877643 211 111  11111


Q ss_pred             CCCcccCCCCceeecC----CHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccccH
Q psy893           83 SPDKWTNKAKSLTLGL----DPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEM  158 (523)
Q Consensus        83 ~~~~~~~~g~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (523)
                      ..+     +....+..    .+......+..+..-......++...+..+.       ...               .   
T Consensus        76 ~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~---------------~---  125 (419)
T TIGR03467        76 DPG-----GRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR-------RTR---------------F---  125 (419)
T ss_pred             cCC-----CCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-------hcC---------------c---
Confidence            110     11101110    0111111111111111111111111111100       000               0   


Q ss_pred             HHHHHHHhhcHHHHHHhhcCChHHHHHH-hhhhhccCCCCCCCcchHHHHHHH--HhhcccCCCCceeecCCCHHHHH-H
Q psy893          159 KDVYSLLTCSAFSILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHH--VMGGAEGVKGAWAYPEGGMGAVS-Q  234 (523)
Q Consensus       159 ~~~~~~~~~s~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~gG~~~l~-~  234 (523)
                         ......|+.+|+++++.++.+...+ ...........|.+.++.+.+...  .+.......+ +.+|+||++.++ +
T Consensus       126 ---~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~gG~~~~~~~  201 (419)
T TIGR03467       126 ---RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASD-LLLPRVPLSELFPE  201 (419)
T ss_pred             ---cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcce-eeeeCCCHHHHHHH
Confidence               0112468899999887666555533 322221111345554443332211  0110011122 348999987766 5


Q ss_pred             HHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCC
Q psy893          235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYAS  313 (523)
Q Consensus       235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  313 (523)
                      .|++.+++.|++|++|++|++|..++ ++++.+. .+|+++.||+||+|+|+..+ .+|++++    ...+.++++.+. 
T Consensus       202 ~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~----~~~~~l~~~~~~-  274 (419)
T TIGR03467       202 PARRWLDSRGGEVRLGTRVRSIEANA-GGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE----DLGALLTALGYS-  274 (419)
T ss_pred             HHHHHHHHcCCEEEcCCeeeEEEEcC-CcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc----hHHHHHhhcCCc-
Confidence            59999999999999999999999987 6654333 57778999999999999986 6787642    355677888776 


Q ss_pred             CeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893          314 PVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH  393 (523)
Q Consensus       314 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~  393 (523)
                      ++.++++.++++. |.  +       .. +  ..+.  +                   .+..++...+    ...++ ..
T Consensus       275 ~~~~v~l~~~~~~-~~--~-------~~-~--~~~~--~-------------------~~~~~~~~~~----~~~~~-~~  315 (419)
T TIGR03467       275 PITTVHLRLDRAV-RL--P-------AP-M--VGLV--G-------------------GLAQWLFDRG----QLAGE-PG  315 (419)
T ss_pred             ceEEEEEEeCCCc-CC--C-------CC-e--eeec--C-------------------CceeEEEECC----cCCCC-CC
Confidence            6779999999753 21  0       11 1  1111  1                   0111222111    11122 22


Q ss_pred             EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893          394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  472 (523)
Q Consensus       394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  472 (523)
                      .+.+++..       ..++.+..++++.+.+++.|++++|... ..++...+.         ....+ .|.......   
T Consensus       316 ~~~~~~~~-------~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~g~~---  375 (419)
T TIGR03467       316 YLAVVISA-------ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVI---------KEKRA-TFAATPGLN---  375 (419)
T ss_pred             EEEEEEec-------chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEE---------EccCC-ccccCCccc---
Confidence            33333221       1123334568999999999999998653 222222211         11111 121111111   


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHH
Q psy893          473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~  519 (523)
                      ..+|       ...+|++|||||||++++|  +.+.||  ||..||++|++
T Consensus       376 ~~~~-------~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~  419 (419)
T TIGR03467       376 RLRP-------GARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK  419 (419)
T ss_pred             ccCC-------CCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence            1244       4467899999999999764  123356  99999999874

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02576 protoporphyrinogen oxidase

Probab=99.95  E-value=1.9e-25  Score=233.16  Aligned_cols=426  Identities=17%  Similarity=0.155  Sum_probs=237.8

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhh---hccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHI---YKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~---~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++ |++|+|||+++++||+++|.+ .+||.+|.|++++....+.+   +++ ++++. +.+.  ++
T Consensus        19 GaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~-~~~~--~~   93 (496)
T PLN02576         19 GAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRDD-LVFP--DP   93 (496)
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChhh-eecC--CC
Confidence            8999999999999999 999999999999999999997 68999999999876555533   333 44432 2121  11


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRG  156 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (523)
                      .....++.     +|+.+.++.++..+   + ..   .      +.....++......+....+..              
T Consensus        94 ~~~~~~~~-----~g~~~~~p~~~~~~---~-~~---~------~~~~~~~~~~~~~~~~~~~~~~--------------  141 (496)
T PLN02576         94 QAPRYVVW-----NGKLRPLPSNPIDL---P-TF---D------LLSAPGKIRAGLGAFGWKRPPP--------------  141 (496)
T ss_pred             CceEEEEE-----CCEEEEcCCChHHh---c-Cc---C------cCChhHHHHHhHHHhhccCCCC--------------
Confidence            11111111     15544444433211   0 00   0      0111111111000000000000              


Q ss_pred             cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchHHHH--HHHH-----------h-hccc-----
Q psy893          157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTSYVL--LHHV-----------M-GGAE-----  216 (523)
Q Consensus       157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-----------~-~~~~-----  216 (523)
                      .      ....|+.+|+.+.|.++..+.++..... +.+ ..+.+.++...+  ++.+           + ....     
T Consensus       142 ~------~~~~sv~~~l~~~~g~~~~~~~~~p~~~-~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~  214 (496)
T PLN02576        142 P------GREESVGEFVRRHLGDEVFERLIDPFVS-GVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNP  214 (496)
T ss_pred             C------CCCCcHHHHHHHhcCHHHHHHHHHHHhC-ceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccc
Confidence            0      0135888999888887777776664432 111 234433332221  1110           0 0000     


Q ss_pred             -----------CCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCC-eEEEcCEEEE
Q psy893          217 -----------GVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNG-LEIKAKYVLS  281 (523)
Q Consensus       217 -----------~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g-~~~~ad~vI~  281 (523)
                                 ........++||++.|+++|++.+.+  ++|++|++|++|+..+ ++.+.|+   .+| +++.||+||+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~  291 (496)
T PLN02576        215 KPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVM  291 (496)
T ss_pred             cccccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEE
Confidence                       00111236799999999999986621  6899999999999887 5412343   345 3689999999


Q ss_pred             cCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHH
Q psy893          282 NTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAY  361 (523)
Q Consensus       282 a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  361 (523)
                      |+|+..+ ..|+++  .+++..+.++++.|. ++.+|++.++++. |..  ......+.   .+..++....        
T Consensus       292 a~P~~~l-~~ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~-~~~--~~~~~~~~---~~~g~l~~~~--------  353 (496)
T PLN02576        292 TAPLYVV-SEMLRP--KSPAAADALPEFYYP-PVAAVTTSYPKEA-VKR--ERLIDGPL---EGFGQLHPRK--------  353 (496)
T ss_pred             CCCHHHH-HHHhcc--cCHHHHHHhccCCCC-ceEEEEEEEchHH-ccc--ccccCCCC---CceEEEccCC--------
Confidence            9999985 577764  456678888888876 6788899988642 210  00000010   1111221110        


Q ss_pred             HHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeE
Q psy893          362 QDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIV  440 (523)
Q Consensus       362 ~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~  440 (523)
                              ...+.+.+.+.|...|.++|+++.+++.++. ...    ...+.+..++++.+.+++.|.++++.-. ...+
T Consensus       354 --------~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~-~~~----~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~  420 (496)
T PLN02576        354 --------QGVKTLGTIYSSSLFPDRAPEGRVLLLNYIG-GSR----NTGIASASEEELVEAVDRDLRKLLLKPGAPPPK  420 (496)
T ss_pred             --------CCCceEEEEeecCcCCCCCCCCCEEEEEEEC-CCC----CcccccCCHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence                    0113444555667778888888776665543 111    1233344678999999999999986321 1222


Q ss_pred             EeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCC-CCCCeEecCCCCCCCCCCCCc--cHHHHHHHH
Q psy893          441 GYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFT-LIPHLLLCGSGAHPGGGVCGA--PGYIAAQMV  517 (523)
Q Consensus       441 ~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t-~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i  517 (523)
                      ...+.   .|..  ..|...+.+.. ...++  .++        ... ..+|||+||+|+. |.|+++|  ||+.||++|
T Consensus       421 ~~~~~---~w~~--a~P~~~~g~~~-~~~~~--~~~--------l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i  483 (496)
T PLN02576        421 VVGVR---VWPK--AIPQYLLGHLD-VLEAA--EKM--------EKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLV  483 (496)
T ss_pred             EEEEe---EcCc--ccCCCCcCHHH-HHHHH--HHH--------HHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHH
Confidence            22111   2221  12222221100 01000  000        011 1279999999995 6789987  999999999


Q ss_pred             HHHh
Q psy893          518 NRLM  521 (523)
Q Consensus       518 ~~~~  521 (523)
                      ++.+
T Consensus       484 ~~~~  487 (496)
T PLN02576        484 ISYL  487 (496)
T ss_pred             HHHH
Confidence            9865

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.94  E-value=6.2e-27  Score=241.18  Aligned_cols=238  Identities=21%  Similarity=0.297  Sum_probs=138.4

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDER  301 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~  301 (523)
                      ...|+...+...+.+   ..|++|++|++|++|..++ +++. |. .+|++++||+||+|+|+..+.. .+.+  .++..
T Consensus       206 ~~~g~~~~~~~~~~~---~~g~~i~l~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~  278 (450)
T PF01593_consen  206 VGMGGLSLALALAAE---ELGGEIRLNTPVTRIERED-GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPED  278 (450)
T ss_dssp             EETTTTHHHHHHHHH---HHGGGEESSEEEEEEEEES-SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHH
T ss_pred             ecccchhHHHHHHHh---hcCceeecCCcceeccccc-cccc-cccccceEEecceeeecCchhhhhhhhhcc--ccccc
Confidence            445555554444444   5577999999999999998 7765 55 7888999999999999999643 3333  36665


Q ss_pred             HHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCC
Q psy893          302 TTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPS  381 (523)
Q Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s  381 (523)
                      ..+.++++.+. +..+|++.++.+. |..         .....+.+.-  +.                 ..+..++..++
T Consensus       279 ~~~a~~~~~~~-~~~~v~l~~~~~~-~~~---------~~~~~~~~~~--~~-----------------~~~~~~~~~~~  328 (450)
T PF01593_consen  279 KRRAIENLPYS-SVSKVFLGFDRPF-WPP---------DIDFFGILYS--DG-----------------FSPIGYVSDPS  328 (450)
T ss_dssp             HHHHHHTEEEE-EEEEEEEEESSGG-GGS---------TTTESEEEEE--SS-----------------TSSEEEEEEEC
T ss_pred             ccccccccccC-cceeEEEeeeccc-ccc---------cccccceecc--cC-----------------ccccccccccc
Confidence            66777777765 6779999999753 210         0011122222  11                 12444555555


Q ss_pred             CCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcc
Q psy893          382 SLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       382 ~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                      ..++.   ++..++..++. .+..    ..|.+..++++.+.++++|++++|. .......++. -..|.+. ..+.|+.
T Consensus       329 ~~~~~---~~~~~l~~~~~-~~~~----~~~~~~~~e~~~~~~~~~L~~~~~~-~~~~~~~~~~-~~~w~~~-~~~~~~~  397 (450)
T PF01593_consen  329 KFPGR---PGGGVLTSYVG-GPDA----PEWDDLSDEEILERVLDDLRKILPG-ASIPDPIDIT-VTRWSRD-PYPRGSY  397 (450)
T ss_dssp             CTTSC---TTSEEEEEEEE-HHHH----HHHTTSCHHHHHHHHHHHHHHHHTT-GGGGEESEEE-EEECTTS-TTTSSSC
T ss_pred             cCccc---ccCCcceeeee-cccc----chhcccchhhhHHHHHHHhhhcccc-cccccccccc-ccccccc-ccccccc
Confidence            44333   33444444432 2221    1234456788999999999999985 1111111100 1123221 1122322


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCC-CCeEecCCCCCCC--CCCCCc--cHHHHHHHHH
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLI-PHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN  518 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i-~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~  518 (523)
                      ........  ...+|       ..++|+ +||||||++++++  +|+++|  ||++||++||
T Consensus       398 ~~~~~~~~--~~~~~-------~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  398 SYFPPGQS--SQFRP-------ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             ECHCTTHH--HHHHH-------HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccccccc--ccccc-------cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence            11111111  01223       446677 7999999999987  788887  9999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02268 probable polyamine oxidase

Probab=99.94  E-value=2.6e-24  Score=220.76  Aligned_cols=407  Identities=17%  Similarity=0.146  Sum_probs=215.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh--h-h--hhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL--R-P--HIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~--~-~--~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||+.|.++|++|+|||+++++||+++|.+ .+|+.+|.|++|++..  . |  .+++++|++     ....+
T Consensus         7 GaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~-----~~~~~   80 (435)
T PLN02268          7 GGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLP-----LYRTS   80 (435)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCc-----eEecc
Confidence            8999999999999999999999999999999999976 6799999999987542  2 2  456667653     33222


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      ... ...+..    +...+.+..+      ....+.+..   ...+.....++.+.........                
T Consensus        81 ~~~-~~~~~~----~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------  130 (435)
T PLN02268         81 GDN-SVLYDH----DLESYALFDM------DGNQVPQEL---VTKVGETFERILEETEKVRDEH----------------  130 (435)
T ss_pred             CCc-cccccc----cccccceecC------CCCCCCHHH---HHHHHHHHHHHHHHHHHHHhcc----------------
Confidence            110 111110    0010110100      000111111   1111111111111111100000                


Q ss_pred             ccHHHHHHHHhhcHHHHHHhhcCCh-------HHHHHHhhhh--hccCC-CCCCCcchHHHHHHHHhhcccCCCCceeec
Q psy893          156 GEMKDVYSLLTCSAFSILNDWFESE-------PLKATLLTDG--LIGAM-VSPHSPSTSYVLLHHVMGGAEGVKGAWAYP  225 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~~~~~-------~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  225 (523)
                              ....|+.+++++++...       .-+.++....  ..+.+ ..+.+.+...    .  .......|...++
T Consensus       131 --------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~----~--~~~~~~~g~~~~~  196 (435)
T PLN02268        131 --------EEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKS----W--DQEELLEGGHGLM  196 (435)
T ss_pred             --------CCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhh----c--CCccccCCCceee
Confidence                    01134445444433211       1122221110  00101 1232222111    0  0000112222367


Q ss_pred             CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC-CCCCCCHHHH
Q psy893          226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI-PKGNLDERTT  303 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll-~~~~~~~~~~  303 (523)
                      .+|++.++++|.+     +++|++|++|++|...+ +++ .|+ .+|+++.||+||+|+|+..+...++ ..+.+|+...
T Consensus       197 ~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~  269 (435)
T PLN02268        197 VRGYDPVINTLAK-----GLDIRLNHRVTKIVRRY-NGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKE  269 (435)
T ss_pred             cCCHHHHHHHHhc-----cCceeCCCeeEEEEEcC-CcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHH
Confidence            8899999999876     55799999999999887 554 466 7787899999999999998522222 2356888888


Q ss_pred             HHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q psy893          304 QAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL  383 (523)
Q Consensus       304 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~  383 (523)
                      +.++++.+. ...++++.++++ .|.          ....  .-.+ .++                 .....+...   .
T Consensus       270 ~ai~~~~~g-~~~Kv~l~f~~~-fw~----------~~~~--~g~~-~~~-----------------~~~~~~~~~---~  314 (435)
T PLN02268        270 EAISDLGVG-IENKIALHFDSV-FWP----------NVEF--LGVV-APT-----------------SYGCSYFLN---L  314 (435)
T ss_pred             HHHHhCCcc-ceeEEEEEeCCC-CCC----------CCce--eecc-CCC-----------------CCCceEEEe---c
Confidence            888988775 688999999974 231          0000  1111 110                 001111111   1


Q ss_pred             CCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcccc
Q psy893          384 DNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH  463 (523)
Q Consensus       384 d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g  463 (523)
                        . .+.|+.++.+++. .+.    ..++.+...+++.+.+++.|.+++|...+.+.. .+   ..|... ....|+...
T Consensus       315 --~-~~~g~~~l~~~~~-g~~----a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~-~~---~~W~~d-p~~~G~~~~  381 (435)
T PLN02268        315 --H-KATGHPVLVYMPA-GRL----ARDIEKLSDEAAANFAMSQLKKMLPDATEPVQY-LV---SRWGSD-PNSLGCYSY  381 (435)
T ss_pred             --c-cCCCCCEEEEEec-cHH----HHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEE-Ee---cccCCC-CCCCccCCC
Confidence              1 1245666655542 111    123334456889999999999999854332221 11   134322 122333211


Q ss_pred             CcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHh
Q psy893          464 GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       464 ~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~  521 (523)
                      .  .+.+.....+       ..+.|+.+|||||+.+... . .+.||  ||.+||++|++.|
T Consensus       382 ~--~~g~~~~~~~-------~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        382 D--LVGKPHDLYE-------RLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             C--CCCCCHHHHH-------HHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            1  1111100111       3456788999999998542 2 35577  9999999999765

>PLN02529 lysine-specific histone demethylase 1

Probab=99.92  E-value=2.1e-22  Score=212.07  Aligned_cols=410  Identities=16%  Similarity=0.141  Sum_probs=210.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-CC--ceeccchhhhhhhhh----hhhccccccccCceEee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-PG--FQFSRASYLLSLLRP----HIYKDLELKKHGLKLLT   73 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-~G--~~~d~g~~~~~~~~~----~~~~~lgl~~~g~~~~~   73 (523)
                      |||++||+||..|+++|++|+|||+++++||++.+.... +|  +.+|.|++|+.+...    .+.++++++     ...
T Consensus       167 GaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~-----~~~  241 (738)
T PLN02529        167 GAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP-----LHK  241 (738)
T ss_pred             CcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC-----ccc
Confidence            899999999999999999999999999999999998632 23  478999999765433    344555543     222


Q ss_pred             cCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHh
Q psy893           74 RDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFT  153 (523)
Q Consensus        74 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (523)
                      .++. +..+..     +|..+....+.     .+.       ..+.++++.+..+...+.    ...             
T Consensus       242 ~~~~-~~~~~~-----~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~~~----~~~-------------  286 (738)
T PLN02529        242 VRDN-CPLYKP-----DGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQIMG----GFA-------------  286 (738)
T ss_pred             cCCC-ceEEeC-----CCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHhcc----cCc-------------
Confidence            2221 111111     14333211110     000       011111222111111110    000             


Q ss_pred             ccccHHHHHHHHhhcHHHHHHhhc------CChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCC
Q psy893          154 RRGEMKDVYSLLTCSAFSILNDWF------ESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEG  227 (523)
Q Consensus       154 ~~~~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  227 (523)
                                 ...|+.+++++..      .++.-+.++........+..+... ..+++.++.-.......|....+.|
T Consensus       287 -----------~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~-s~LSl~~~~~~~~~e~~G~~~~i~G  354 (738)
T PLN02529        287 -----------NDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCL-SDLSAAYWDQDDPYEMGGDHCFLAG  354 (738)
T ss_pred             -----------cCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCCh-HHhhhhHhhhccccccCCceEEECC
Confidence                       0123333333221      112222233211100001112111 1222222111000112333447899


Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHHHHHHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDERTTQAV  306 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~~~~~~  306 (523)
                      |+++|+++|++.     ..|++|++|++|..++ +++ .|+.+++++.||+||+|+|+..+.. .+...+.+|+...+.+
T Consensus       355 G~~~Li~aLA~~-----L~IrLnt~V~~I~~~~-dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI  427 (738)
T PLN02529        355 GNWRLINALCEG-----VPIFYGKTVDTIKYGN-DGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAI  427 (738)
T ss_pred             cHHHHHHHHHhc-----CCEEcCCceeEEEEcC-CeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHH
Confidence            999999999873     4599999999999987 544 3555666899999999999998532 2323446888888999


Q ss_pred             hcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCC
Q psy893          307 QSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNT  386 (523)
Q Consensus       307 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~  386 (523)
                      +++.+. ++.+|++.++++ .|..        ..  . ..-++ .++.               .....+++. .+.   .
T Consensus       428 ~rL~yG-~v~KV~L~F~~~-FW~~--------~~--~-~fG~l-~~~~---------------~~~g~~~~~-~~~---~  474 (738)
T PLN02529        428 DRLGFG-LLNKVAMVFPSV-FWGE--------EL--D-TFGCL-NESS---------------NKRGEFFLF-YGY---H  474 (738)
T ss_pred             HcCCCc-eeEEEEEEeCCc-cccC--------CC--C-ceEEE-eccC---------------CCCceEEEE-ecC---C
Confidence            999886 789999999864 3410        00  1 11122 1110               011112221 111   1


Q ss_pred             CCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CC-CCeEEeEecChhhHHHhcCCCCCcccc
Q psy893          387 LSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG--FT-QDIVGYEILTPPDLEKEFGLTGGNIFH  463 (523)
Q Consensus       387 ~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g  463 (523)
                      . +.|..++.+++. .+.    ...+.....+++.+.+++.|.++++.  .. ...+...+   ..|... ....|+...
T Consensus       475 ~-~~ggpvLvafv~-G~~----A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~---t~W~~D-P~s~GsYS~  544 (738)
T PLN02529        475 T-VSGGPALVALVA-GEA----AQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTIC---TRWGSD-PLSYGSYSH  544 (738)
T ss_pred             C-CCCCCEEEEEEC-chh----hHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEE---ccCCcC-CCCCCCccc
Confidence            1 123344555542 111    11233345578899999999998842  21 01111111   133322 122343211


Q ss_pred             CcccccccccCCCCCCCCCCCCCCC-CCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHh
Q psy893          464 GALSLNQLLFNRPLPIQGPSSPFTL-IPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       464 ~~~~~~q~~~~rp~~~~~~~~~~t~-i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~  521 (523)
                      ..  +.+......       ....| .++|||||+++..+  +-+.||  ||.+||++|++.+
T Consensus       545 ~~--~g~~~~d~~-------~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l  598 (738)
T PLN02529        545 VR--VQSSGSDYD-------ILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVA  598 (738)
T ss_pred             CC--CCCchhHHH-------HHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence            11  000000000       11223 46899999998643  234577  9999999999865

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.91  E-value=6.5e-22  Score=209.21  Aligned_cols=266  Identities=19%  Similarity=0.201  Sum_probs=149.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCc----eeccchhhhhhhh--h--hhhccccccccCceEe
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGF----QFSRASYLLSLLR--P--HIYKDLELKKHGLKLL   72 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~----~~d~g~~~~~~~~--~--~~~~~lgl~~~g~~~~   72 (523)
                      |||++||+||+.|++.|++|+|+|+++++||++.+.. .+|+    .+|.|++|+....  |  .+++++|++.     .
T Consensus       245 GaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~-~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~-----~  318 (808)
T PLN02328        245 GAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK-MKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPL-----H  318 (808)
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc-cCCCCcceeccCCceeecCCCccHHHHHHHHcCCce-----E
Confidence            8999999999999999999999999999999999887 4443    5799988876543  2  4667776542     2


Q ss_pred             ecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           73 TRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                      ..+. .+..+..+     |+.+....+     ..+       ...+.++++...++.....+.....             
T Consensus       319 ~~~~-~~~~~~~d-----G~~~~~~~~-----~~v-------~~~f~~lL~~~~klr~~~~~~~~~~-------------  367 (808)
T PLN02328        319 KVRD-ICPLYLPD-----GKAVDAEID-----SKI-------EASFNKLLDRVCKLRQAMIEEVKSV-------------  367 (808)
T ss_pred             ecCC-CceEEeCC-----CcCcchhhh-----hhH-------HHHHHHHHHHHHHHHHhhhhccccc-------------
Confidence            2221 11111121     443321110     000       1112222222222211111100000             


Q ss_pred             hccccHHHHHHHHhhcHHHHHHh------hcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecC
Q psy893          153 TRRGEMKDVYSLLTCSAFSILND------WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPE  226 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (523)
                                   ..|+.+++++      +..++.-+.++........+..... ...+.+..+.........|.+.++.
T Consensus       368 -------------D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~-ls~LSl~~w~qd~~~e~~G~~~~v~  433 (808)
T PLN02328        368 -------------DVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASL-MSNLSMAYWDQDDPYEMGGDHCFIP  433 (808)
T ss_pred             -------------CcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhh-HHHHHhhhhhccccccCCCeEEEEC
Confidence                         0122222221      1122322233221110000011100 0111111110000011223344788


Q ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCCCHHHHHH
Q psy893          227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNLDERTTQA  305 (523)
Q Consensus       227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~~~~~~~~  305 (523)
                      ||++.|+++|++.+     .|++|++|++|...+ +.+ .|..+|+++.||+||+|+|+..+.. .+...+.+|+...+.
T Consensus       434 GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~-dgV-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~A  506 (808)
T PLN02328        434 GGNDTFVRELAKDL-----PIFYERTVESIRYGV-DGV-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDA  506 (808)
T ss_pred             CcHHHHHHHHHhhC-----CcccCCeeEEEEEcC-CeE-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHH
Confidence            99999999999865     399999999999987 444 2346788999999999999998532 222234588888999


Q ss_pred             HhcCCCCCCeEEEEEecCCC
Q psy893          306 VQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       306 ~~~~~~~~~~~~v~~~~~~~  325 (523)
                      ++++.|. ++.+|++.++++
T Consensus       507 I~~l~yG-~~~KV~L~F~~~  525 (808)
T PLN02328        507 IQRLGYG-LLNKVALLFPYN  525 (808)
T ss_pred             HHcCCCc-ceEEEEEEeCCc
Confidence            9999886 789999999864

>PLN03000 amine oxidase

Probab=99.90  E-value=1.6e-21  Score=205.99  Aligned_cols=242  Identities=15%  Similarity=0.166  Sum_probs=143.5

Q ss_pred             CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHH-hhCCCCCC
Q psy893          220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL-DLIPKGNL  298 (523)
Q Consensus       220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~-~ll~~~~~  298 (523)
                      |.+..++||++.|+++|++.+     .|+++++|++|...+ +.+ .|+.+++++.||+||+|+|+..+-. .+...+.+
T Consensus       371 G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL  443 (881)
T PLN03000        371 GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGS-NGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL  443 (881)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECC-CeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence            334478899999999999866     399999999999987 544 3554445899999999999998521 23334568


Q ss_pred             CHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy893          299 DERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMV  378 (523)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~  378 (523)
                      |+...+.++++.+. .+.+|++.++++ .|-        .+.   ...-++ .++.               ..+...++ 
T Consensus       444 P~~K~~AI~rL~~G-~l~KViL~Fd~~-FW~--------~d~---~~FG~l-~~~~---------------~~rg~~~~-  493 (881)
T PLN03000        444 PQRKLDCIKRLGFG-LLNKVAMLFPYV-FWS--------TDL---DTFGHL-TEDP---------------NYRGEFFL-  493 (881)
T ss_pred             CHHHHHHHHcCCCc-ceEEEEEEeCCc-ccc--------CCC---CceeEE-ecCC---------------CCCceeEE-
Confidence            99899999999886 789999999975 342        111   111112 1110               00111122 


Q ss_pred             cCCCCCCCCCC-CCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--C--CCCeEEeEecChhhHHHh
Q psy893          379 LPSSLDNTLSP-PGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG--F--TQDIVGYEILTPPDLEKE  453 (523)
Q Consensus       379 ~~s~~d~~~ap-~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~--~~~i~~~~~~tP~~~~~~  453 (523)
                      +.+     ..| .|..++..++. .+.    ...|.....+++.+.+++.|.++++.  .  .+.+ ...+.   .|...
T Consensus       494 f~s-----~sp~~G~pVLvafv~-Gd~----A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv-~~ivt---rW~~D  559 (881)
T PLN03000        494 FYS-----YAPVAGGPLLIALVA-GEA----AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPL-QTVCT---RWGGD  559 (881)
T ss_pred             EeC-----CCCCCCCcEEEEEec-Cch----hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCce-EEEEc---cCCCC
Confidence            222     223 45556655553 111    12344445688899999999999852  2  1222 11111   34332


Q ss_pred             cCCCCCccccCcccccccccCCCCCCCCCCCCCCCC--CCeEecCCCCCC-C-CCCCCc--cHHHHHHHHHHHhc
Q psy893          454 FGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI--PHLLLCGSGAHP-G-GGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       454 ~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i--~~LylaG~~~~p-g-~g~~~a--sG~~aA~~i~~~~~  522 (523)
                       ....|+....  .+.+......       ....|+  .+|||||+.|.. . +.+.||  ||.+||++|++.++
T Consensus       560 -PysrGSYS~~--~pG~~~~~~d-------~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~  624 (881)
T PLN03000        560 -PFSLGSYSNV--AVGASGDDYD-------ILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK  624 (881)
T ss_pred             -CCCCccccCC--CCCCchHHHH-------HHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence             1224442111  1111110000       123344  479999998853 2 244577  99999999998764

>PLN02676 polyamine oxidase

Probab=99.90  E-value=1.5e-21  Score=200.81  Aligned_cols=241  Identities=16%  Similarity=0.195  Sum_probs=142.5

Q ss_pred             CCCHHHHHHHHHHHHHHC------CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh--hCCCC
Q psy893          226 EGGMGAVSQALARSAQAS------GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD--LIPKG  296 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~--ll~~~  296 (523)
                      +||+++|++.|++.+.++      +.+|++|++|++|..++ +.| .|+ .+|++++||+||+|+|+..+ ..  +...+
T Consensus       220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~gV-~V~~~~G~~~~a~~VIvtvPl~vL-k~~~I~F~P  296 (487)
T PLN02676        220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NGV-TVKTEDGSVYRAKYVIVSVSLGVL-QSDLIKFKP  296 (487)
T ss_pred             CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-CcE-EEEECCCCEEEeCEEEEccChHHh-ccCceEEeC
Confidence            689999999999977543      36799999999999987 555 466 78889999999999999985 43  44455


Q ss_pred             CCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEE
Q psy893          297 NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIE  376 (523)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  376 (523)
                      .+|....+.++++.+. ...+|++.++++ .|..       .  ...  ..+...+. .          .+.   .+ ++
T Consensus       297 ~LP~~k~~ai~~l~~g-~~~Kv~l~f~~~-FW~~-------~--~~~--~~~~~~~~-~----------~~~---~~-~~  348 (487)
T PLN02676        297 PLPDWKIEAIYQFDMA-VYTKIFLKFPYK-FWPS-------G--PGT--EFFLYAHE-R----------RGY---YP-FW  348 (487)
T ss_pred             CCCHHHHHHHHhCCce-eeEEEEEEeCCC-CCCC-------C--CCc--eeeeeecc-c----------ccc---ch-hh
Confidence            6888888888888765 789999999865 4521       0  001  11110110 0          000   01 11


Q ss_pred             EEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCCeEEeEecChhhHHHhcC
Q psy893          377 MVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG-FTQDIVGYEILTPPDLEKEFG  455 (523)
Q Consensus       377 v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tP~~~~~~~~  455 (523)
                      ..    .+.  .+++..++.+++. .+.    ...|.....++..+.+++.|.++++. ..+ ++....   .+|... .
T Consensus       349 ~~----~~~--~~~~~~~l~~~~~-g~~----a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~-p~~~~~---~~W~~d-p  412 (487)
T PLN02676        349 QH----LEN--EYPGSNVLFVTVT-DEE----SRRIEQQPDSETKAEIMEVLRKMFGPNIPE-ATDILV---PRWWSN-R  412 (487)
T ss_pred             hh----ccc--CCCCCCEEEEEec-hHH----HHHHHhCCHHHHHHHHHHHHHHHhCCCCCC-cceEEe---cccCCC-C
Confidence            11    111  1234444444432 111    01233334577888999999999852 222 121111   134332 2


Q ss_pred             CCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHhc
Q psy893          456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ...|+....  .+.+.....+       ..+.|+.+|||||+.+... . -+.||  ||.+||++|++.+.
T Consensus       413 ~s~Gsys~~--~pG~~~~~~~-------~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~  474 (487)
T PLN02676        413 FFKGSYSNW--PIGVSRYEFD-------QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK  474 (487)
T ss_pred             CCCcccCCC--CCCCChhHHH-------HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence            224442111  1111111111       3356788999999998642 3 34577  99999999998763

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.90  E-value=1e-21  Score=189.58  Aligned_cols=239  Identities=21%  Similarity=0.153  Sum_probs=152.6

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT  302 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~  302 (523)
                      .+.|||+.|++++++.+   |-.|+++.+|.+|..++ .+| .|+ .+..++.+|.||||+|+..+ .++--.+.+++.+
T Consensus       203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~-~gV-~Vt~~~~~~~~ad~~i~tiPl~~l-~qI~f~P~l~~~~  276 (450)
T COG1231         203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDG-DGV-TVTADDVGQYVADYVLVTIPLAIL-GQIDFAPLLPAEY  276 (450)
T ss_pred             ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcC-CeE-EEEeCCcceEEecEEEEecCHHHH-hhcccCCCCCHHH
Confidence            44599999999999955   56899999999999987 544 366 45468999999999999985 6665555688889


Q ss_pred             HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893          303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS  382 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~  382 (523)
                      .+++...+|. +.+++.+.++++ .|..       ..  .+.|..+.  +                   .+..++|.+|+
T Consensus       277 ~~a~~~~~y~-~~~K~~v~f~rp-FWee-------~~--~l~G~~~t--D-------------------~~~~~i~~~s~  324 (450)
T COG1231         277 KQAAKGVPYG-SATKIGVAFSRP-FWEE-------AG--ILGGESLT--D-------------------LGLGFISYPSA  324 (450)
T ss_pred             HHHhcCcCcc-hheeeeeecCch-hhhh-------cc--cCCceEee--c-------------------CCcceEecCcc
Confidence            9999888776 789999998864 4521       11  13344432  2                   24456777664


Q ss_pred             CCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCeEEeEecChhhHHHhcCCCCCcc
Q psy893          383 LDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       383 ~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                       +.   -+|..++.-+.....    +...|.....++..+.++..+.+++|+- .+.......   .+|.++-...+|+.
T Consensus       325 -~~---~~G~gVl~g~~~~g~----~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~---~~W~~dpwt~G~~a  393 (450)
T COG1231         325 -PF---ADGPGVLLGSYAFGD----DALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGAS---VDWSKDPWTLGGTA  393 (450)
T ss_pred             -cc---CCCceEEEeeeeccc----cceeEecCCHHHHHHHHHHhHhhhCChhhcccccccee---eecccCCcCCcccc
Confidence             21   256665533111111    1124555556788899999999999944 333333121   13544322222221


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecC-CCC-CCCCCCCCc--cHHHHHHHHHHHh
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCG-SGA-HPGGGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG-~~~-~pg~g~~~a--sG~~aA~~i~~~~  521 (523)
                         .....|..-.-|       ....|...+++|| .++ .-++.+.||  ||..||.+|.+.+
T Consensus       394 ---a~~~g~~~~~~~-------~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l  447 (450)
T COG1231         394 ---AYPPGQRTKLYP-------TLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALL  447 (450)
T ss_pred             ---ccCCcccccccc-------cccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence               122222211111       2344778899999 444 234566788  9999999998754

>PLN02568 polyamine oxidase

Probab=99.89  E-value=4.1e-21  Score=198.79  Aligned_cols=99  Identities=18%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh-----hCCC
Q psy893          222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD-----LIPK  295 (523)
Q Consensus       222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~-----ll~~  295 (523)
                      ...++||++.|+++|++.+.  +.+|++|++|++|..++ +.+ .|+ .+|+++.||+||+|+|+..+...     +.-.
T Consensus       234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~-~~v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~  309 (539)
T PLN02568        234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD-EPV-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS  309 (539)
T ss_pred             eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC-CeE-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence            34789999999999999874  35799999999999886 544 466 78888999999999999986422     2334


Q ss_pred             CCCCHHHHHHHhcCCCCCCeEEEEEecCCC
Q psy893          296 GNLDERTTQAVQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  325 (523)
                      +.+|+...+.++++.+. .+.+|++.++++
T Consensus       310 P~LP~~k~~Ai~~l~~g-~~~Ki~l~f~~~  338 (539)
T PLN02568        310 PPLPDFKTDAISRLGFG-VVNKLFVELSPR  338 (539)
T ss_pred             CCCCHHHHHHHHhcCCc-eeeEEEEEecCC
Confidence            56888888999999875 789999999976

>PLN02976 amine oxidase

Probab=99.86  E-value=1.9e-19  Score=195.10  Aligned_cols=242  Identities=15%  Similarity=0.165  Sum_probs=141.1

Q ss_pred             eecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECC---------CCCeEEEE-eCCeEEEcCEEEEcCChHHHHH-h
Q psy893          223 AYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDS---------DKRASGVV-TNGLEIKAKYVLSNTTAKCTLL-D  291 (523)
Q Consensus       223 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---------~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~-~  291 (523)
                      ..++||++.|+++|++.+     .|++|++|++|...+         ++. +.|. .+|+++.||+||+|+|+..+-. .
T Consensus       929 ~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG-VtVtTsDGetftADaVIVTVPLGVLKag~ 1002 (1713)
T PLN02976        929 CMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK-VKVSTSNGSEFLGDAVLITVPLGCLKAET 1002 (1713)
T ss_pred             EEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc-EEEEECCCCEEEeceEEEeCCHHHhhhcc
Confidence            368999999999999855     499999999999842         133 3466 7888999999999999998532 2


Q ss_pred             hCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCC
Q psy893          292 LIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPST  371 (523)
Q Consensus       292 ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~  371 (523)
                      +...+.||....+.++++.+. .+.+|++.++++ .|-.          . .. .+....++              . ..
T Consensus      1003 I~FsPPLPe~KqaAIqrLgfG-~lnKV~LeFdrp-FW~~----------d-~d-~FG~s~ed--------------t-dl 1053 (1713)
T PLN02976       1003 IKFSPPLPDWKYSSIQRLGFG-VLNKVVLEFPEV-FWDD----------S-VD-YFGATAEE--------------T-DL 1053 (1713)
T ss_pred             cccCCcccHHHHHHHHhhccc-cceEEEEEeCCc-cccC----------C-CC-cccccccc--------------C-CC
Confidence            444567998888889998875 789999999873 4420          0 00 00000000              0 01


Q ss_pred             CCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhH
Q psy893          372 RPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDL  450 (523)
Q Consensus       372 ~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~  450 (523)
                      ...+++.++     ...|.|..++..++. .+.    ...+.....+++.+.+++.|.++|++-. ..++...+.   .|
T Consensus      1054 rG~~~~~wn-----lr~psG~pVLVafv~-G~a----AreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvT---rW 1120 (1713)
T PLN02976       1054 RGQCFMFWN-----VKKTVGAPVLIALVV-GKA----AIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVT---DW 1120 (1713)
T ss_pred             CceEEEecc-----CCCCCCCCEEEEEec-cHh----HHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEe---cC
Confidence            122233221     123445555555542 111    1123333457788999999999987421 122211111   23


Q ss_pred             HHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCC-eEecCCCCCCC-C-CCCCc--cHHHHHHHHHHHhc
Q psy893          451 EKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH-LLLCGSGAHPG-G-GVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       451 ~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~-LylaG~~~~pg-~-g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ... +...|+. ... .+.+....+.       ....|+.| |||||..+... . -+.||  ||.+||++|+..+.
T Consensus      1121 ssD-PySrGSY-Sy~-~PGs~~~d~d-------~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976       1121 GRD-PFSYGAY-SYV-AIGASGEDYD-------ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred             CCC-CCcCccc-cCC-CCCCCchHHH-------HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            322 1223432 111 1111100000       12346666 99999987542 2 34577  99999999998763

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1e-19  Score=179.30  Aligned_cols=433  Identities=18%  Similarity=0.176  Sum_probs=229.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhhh---ccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY---KDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~~---~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||+.|+++|++|+|+|+++++||.+.++...+|-..|.|-|+|..+.+.++   ++++.+.. +.+..... 
T Consensus         7 GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~-~~~~~~~~-   84 (485)
T COG3349           7 GAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDR-LQLREHTK-   84 (485)
T ss_pred             cccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchhe-eehHhhhh-
Confidence            89999999999999999999999999999999999987789999999998877766544   44443322 21111100 


Q ss_pred             CcccCCCCcccCCCCc--eeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           78 SYTPLSPDKWTNKAKS--LTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      .+.. ..+   ..|..  +..+.-+..+.            .              ...++..+-.+..+..+..+.-..
T Consensus        85 ~~~~-~~~---~~g~~~~~~~~~~p~p~~------------~--------------~~~~l~~~~~~~~~~~~~~~~l~~  134 (485)
T COG3349          85 TFVG-SGT---RPGAIGRFARPDAPQPTN------------G--------------LKAFLRLPQLPRREKIRFVLRLGD  134 (485)
T ss_pred             hhcc-cCC---CCCcccccccCCCCCcch------------h--------------hhhhhhccccCHHHHhHHhhcccc
Confidence            0000 000   00000  00000000000            0              001111111111111111000001


Q ss_pred             c---cHHHHHHHHhhcHHHHHHhhcCCh-HHHHHHhhhhhccCCCCCCCcchHHHH--HHHHhhcccCCCCceeecCCCH
Q psy893          156 G---EMKDVYSLLTCSAFSILNDWFESE-PLKATLLTDGLIGAMVSPHSPSTSYVL--LHHVMGGAEGVKGAWAYPEGGM  229 (523)
Q Consensus       156 ~---~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~gG~  229 (523)
                      .   ....+.++...|.++|+.+.-..+ ..++.+.....-..+..|+..++...+  +...+. ............|+.
T Consensus       135 ~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~-~~~~~~i~~~~~g~~  213 (485)
T COG3349         135 APIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLI-VTLEASILRNLRGSP  213 (485)
T ss_pred             ccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHH-hccCcchhhhhcCCC
Confidence            1   234555666789999998855443 344555544444444566655543321  111111 110111112345554


Q ss_pred             -HHHHHHHHHHHHHCCcEEEeCceeeEEEECC---CCCeEEEEeCCeEE---EcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893          230 -GAVSQALARSAQASGAQLFTSQTVTEITLDS---DKRASGVVTNGLEI---KAKYVLSNTTAKCTLLDLIPKGNLDERT  302 (523)
Q Consensus       230 -~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---~~~~~~v~~~g~~~---~ad~vI~a~~~~~~~~~ll~~~~~~~~~  302 (523)
                       ..+...+.+++++.|.++++..+|.+|..+.   +.+++++...+...   .++.++.+.+... +...++.+-...+.
T Consensus       214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~~~  292 (485)
T COG3349         214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKWSN  292 (485)
T ss_pred             cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccch-HhhcCccccccccc
Confidence             4678899999999999999999999999864   24466666225433   4455666655555 34455543221333


Q ss_pred             HHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCC
Q psy893          303 TQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSS  382 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~  382 (523)
                      ...+..+. ..++.++++.++....++..         ..+.+++..  ..       +..      .+.+..+.-.+..
T Consensus       293 f~~ly~l~-~~p~~~~~l~~~~~~~~~~~---------~~~~~~~dn--~~-------~s~------~~l~~~~ad~~~~  347 (485)
T COG3349         293 FDGLYGLR-LVPVITLHLRFDGWVTELTD---------RNQQFGIDN--LL-------WSD------DTLGGVVADLALT  347 (485)
T ss_pred             cccccccc-ccceeEEEEeecCccccccc---------cchhhhhhc--cc-------ccc------ccCCceeeecccc
Confidence            33443332 34788889998865433211         112111110  00       000      0112112111111


Q ss_pred             CCCCCCCCCce-EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHHhcCCCCCc
Q psy893          383 LDNTLSPPGHH-VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGN  460 (523)
Q Consensus       383 ~d~~~ap~G~~-~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~  460 (523)
                      . +....+|.. .+....  .|     +.+|....++++.....+.+...+|... ..+..+.+.++....         
T Consensus       348 ~-~~y~e~g~~~~le~~~--~~-----~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~---------  410 (485)
T COG3349         348 S-PDYVEPGAGCYLEKVL--AP-----GWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLY---------  410 (485)
T ss_pred             c-hhhccccchhhhhhhh--cc-----cccccccchhhHHHHHHHHhhhcCCchhcccccccceecccccc---------
Confidence            1 133334432 111111  12     2245556778888899999998888764 344445555544332         


Q ss_pred             cccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCC-CCCCCC-CCc--cHHHHHHHHHHHh
Q psy893          461 IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGA-HPGGGV-CGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       461 ~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~-~pg~g~-~~a--sG~~aA~~i~~~~  521 (523)
                        +......   ..||       ..+||++|++++||++ .+..+. +++  ||+.||+.|+..+
T Consensus       411 --~~~pgs~---~~rP-------~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~  463 (485)
T COG3349         411 --GLAPGSY---HYRP-------EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL  463 (485)
T ss_pred             --ccCCCcc---ccCC-------CCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence              2222222   3577       7899999999999999 343333 355  9999999999765

>KOG0029|consensus

Probab=99.83  E-value=2.3e-19  Score=182.34  Aligned_cols=240  Identities=14%  Similarity=0.111  Sum_probs=140.4

Q ss_pred             eecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh-hCCCCCCCH
Q psy893          223 AYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD-LIPKGNLDE  300 (523)
Q Consensus       223 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~-ll~~~~~~~  300 (523)
                      ....+|+..++.++++     |.+|+++..|.+|...+++. +.++ .++..+.+|.||+++|...+-.. +...+.+|.
T Consensus       212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~  285 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPR  285 (501)
T ss_pred             hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcH
Confidence            3668888888888887     88999999999999987443 3455 56666999999999999986332 334567899


Q ss_pred             HHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcC
Q psy893          301 RTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLP  380 (523)
Q Consensus       301 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~  380 (523)
                      ...+.++++... .+.+|.+.++.. .|-           ......... .++..               ..+. + .+.
T Consensus       286 ~k~~aI~~lg~g-~~~Kv~l~F~~~-fW~-----------~~~d~fg~~-~~~~~---------------~~~~-~-~f~  334 (501)
T KOG0029|consen  286 WKQEAIDRLGFG-LVNKVILEFPRV-FWD-----------QDIDFFGIV-PETSV---------------LRGL-F-TFY  334 (501)
T ss_pred             HHHHHHHhcCCC-ceeEEEEEeccc-cCC-----------CCcCeEEEc-ccccc---------------ccch-h-hhh
Confidence            999999999864 788999888854 341           111112222 22110               0010 0 111


Q ss_pred             CCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC--CCCeEEeEecChhhHHHhcCCCC
Q psy893          381 SSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGF--TQDIVGYEILTPPDLEKEFGLTG  458 (523)
Q Consensus       381 s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~--~~~i~~~~~~tP~~~~~~~~~~~  458 (523)
                      +..+-.    ++.++...+....     ...++...++++.+.++..|+++|+..  .+.+.+. +.   .|... ....
T Consensus       335 ~~~~~~----~~~~l~~~~~~~~-----a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~-vt---~w~~d-~~~~  400 (501)
T KOG0029|consen  335 DCKPVA----GHPVLMSVVVGEA-----AERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDAL-VT---RWGTD-PLSG  400 (501)
T ss_pred             hcCccC----CCCeEEEEehhhh-----hHHHhcCCHHHHHHHHHHHHHHHhccCcCCCcccee-ee---eeccc-ccCC
Confidence            111111    1222332321111     124556678999999999999999821  2211111 11   12111 1223


Q ss_pred             CccccCcccccccccCCCCCCCCCCCCCCCCCC-eEecCCCCCC-C-CCCCCc--cHHHHHHHHHHHhc
Q psy893          459 GNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH-LLLCGSGAHP-G-GGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       459 G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~-LylaG~~~~p-g-~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      |+.+-...       ..|...+.  ..+.|+.| +||+|..|.- . +.+.||  ||.+||..|+..+.
T Consensus       401 gsys~~~~-------~~~~~~y~--~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~  460 (501)
T KOG0029|consen  401 GSYSYVAV-------GSDGDDYD--RLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI  460 (501)
T ss_pred             ccccccCC-------CCChhHHH--HHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence            33321111       11111111  34668899 9999988731 1 245577  99999999998764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.79  E-value=3.8e-17  Score=164.63  Aligned_cols=320  Identities=14%  Similarity=0.171  Sum_probs=181.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-------------------CCceeccchhhhhhhh--hhhh
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-------------------PGFQFSRASYLLSLLR--PHIY   59 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-------------------~G~~~d~g~~~~~~~~--~~~~   59 (523)
                      |+|++|+.+|+.|+++|++|+++|+|++.||+.+|+...                   ..|..|..+.++....  -.++
T Consensus        11 GtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G~lv~lL   90 (443)
T PTZ00363         11 GTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASGELVKIL   90 (443)
T ss_pred             CCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCChHHHHH
Confidence            899999999999999999999999999999999987411                   1112222232211111  1345


Q ss_pred             ccccccccCceEeecCCCCcccC-CCCcccCCCCceeecCC-HHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893           60 KDLELKKHGLKLLTRDPRSYTPL-SPDKWTNKAKSLTLGLD-PQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD  137 (523)
Q Consensus        60 ~~lgl~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (523)
                      ...++.++ +++...+.  ..++ .+      |+...+|.+ .+.+...+..++  +...+.+|+..+..+..       
T Consensus        91 ~~s~v~ry-leF~~l~g--~~v~~~~------g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~-------  152 (443)
T PTZ00363         91 LHTDVTRY-LEFKVIDG--SYVYQKE------GKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDE-------  152 (443)
T ss_pred             hhcCccce-eeeEEece--EEEEecC------CeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhcc-------
Confidence            55566666 67765542  2222 22      565666653 333333232222  44445555554433221       


Q ss_pred             cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhcc---CCC-CCCCcchHHHHHHHHhh
Q psy893          138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIG---AMV-SPHSPSTSYVLLHHVMG  213 (523)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~  213 (523)
                      .++..         ...       ..+...|+.++++++..++..+.++.......   .+. .|... +...+..+...
T Consensus       153 ~~~~~---------~~~-------~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~-tl~ri~~y~~S  215 (443)
T PTZ00363        153 NDPET---------HKG-------LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE-TVMRIKLYMDS  215 (443)
T ss_pred             CChhh---------hcc-------cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH-HHHHHHHHHHH
Confidence            00000         000       00123588899999988888887665332211   111 11111 11111122211


Q ss_pred             cccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhh
Q psy893          214 GAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       214 ~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~l  292 (523)
                      ...+..+.+.+|.||++.|+++|++.++..|++++++++|++|..++++++++|+ .+|+++.|+.||++.+..      
T Consensus       216 ~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~------  289 (443)
T PTZ00363        216 LSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF------  289 (443)
T ss_pred             HhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc------
Confidence            1111122334899999999999999999999999999999999987646778888 799999999999965432      


Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCC
Q psy893          293 IPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTR  372 (523)
Q Consensus       293 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~  372 (523)
                       |.. .        .   ....+....+.++.+...+        .  ..+...|.+ +..              .....
T Consensus       290 -p~~-~--------~---~~~~v~R~i~i~~~pi~~~--------~--~~~~~~i~~-P~~--------------~~~~~  331 (443)
T PTZ00363        290 -PDK-V--------K---KVGKVIRCICILNHPIPNT--------N--NANSCQIII-PQK--------------QLGRK  331 (443)
T ss_pred             -ccc-c--------c---cccEEEEEEEEEccccccc--------C--cCccEEEEE-CCc--------------ccCCC
Confidence             110 0        0   1123444455556553211        0  112335666 221              12223


Q ss_pred             CeEEEEcCCCCCCCCCCCCceEEEEEec
Q psy893          373 PMIEMVLPSSLDNTLSPPGHHVCLLFTQ  400 (523)
Q Consensus       373 ~~~~v~~~s~~d~~~ap~G~~~i~~~~~  400 (523)
                      +.+++..-+. +...+|+|+.++.+.+.
T Consensus       332 ~~i~v~~~s~-~~~~cp~g~~i~~~st~  358 (443)
T PTZ00363        332 NDIYIMLVSS-NHGVCPKGKYIAIISTT  358 (443)
T ss_pred             CCEEEEEecC-CCCcCCCCcEEEEEEEe
Confidence            5567665442 34668999998877653

>KOG1276|consensus

Probab=99.79  E-value=2.1e-17  Score=156.87  Aligned_cols=421  Identities=19%  Similarity=0.157  Sum_probs=235.7

Q ss_pred             CCChhHHHHHHHHHHcCCcE--EEEccCCCCCcceeeecccCCceeccchhhhhhhhh------hhhccccccccCceEe
Q psy893            1 EAGHNGLVSAAYLARAGLSV--AVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP------HIYKDLELKKHGLKLL   72 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V--~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~------~~~~~lgl~~~g~~~~   72 (523)
                      |||++||+||++|++++.+|  +|+|+.+++||.++|....+|+.||.|+..+....+      .++.+||+++. +..+
T Consensus        18 GGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e-~~~i   96 (491)
T KOG1276|consen   18 GGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDE-LQPI   96 (491)
T ss_pred             CCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccce-eeec
Confidence            89999999999999998775  559999999999999444689999999877654444      57888888754 3222


Q ss_pred             ec-CCCCcccCCCCcccCCCCceeecCCHHH-HHHHHHccChhhHHHHHHHHHHHHHHHhH-HHhhhhcC-CCChhhHHH
Q psy893           73 TR-DPRSYTPLSPDKWTNKAKSLTLGLDPQK-NYEQIARFSVKDAQNFEKYDHHIEEITNL-LDPLFDIA-PHDFGNLLM  148 (523)
Q Consensus        73 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~  148 (523)
                      .. .+.....+...    .++-..++..+.. ....+..+              .+.+... +...++.+ ..+      
T Consensus        97 ~~~~paaknr~l~~----~~~L~~vP~sl~~s~~~~l~p~--------------~k~L~~a~l~e~fr~~~~~~------  152 (491)
T KOG1276|consen   97 DISHPAAKNRFLYV----PGKLPTVPSSLVGSLKFSLQPF--------------GKPLLEAFLRELFRKKVSDP------  152 (491)
T ss_pred             CCCChhhhheeecc----CcccccCCcccccccccccCcc--------------cchhHHHHHhhhccccCCCC------
Confidence            21 22111111100    0222222222211 00000001              0111111 11111110 000      


Q ss_pred             HHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCC-CCCCCcchH--HHHHHHHh------------h
Q psy893          149 YNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAM-VSPHSPSTS--YVLLHHVM------------G  213 (523)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~------------~  213 (523)
                                     ...+|+.+|.+++|.++....+++.++. |.+ .++.+.+.-  |..++...            +
T Consensus       153 ---------------~~dESV~sF~~RrfG~eV~d~~isp~i~-GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~  216 (491)
T KOG1276|consen  153 ---------------SADESVESFARRRFGKEVADRLISPFIR-GIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRA  216 (491)
T ss_pred             ---------------CccccHHHHHHHhhhHHHHHHHHHHHhC-ccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHH
Confidence                           0135888888888887766666665442 221 233333322  22222100            0


Q ss_pred             ---c--------------ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-EEEE-eCCe-E
Q psy893          214 ---G--------------AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-SGVV-TNGL-E  273 (523)
Q Consensus       214 ---~--------------~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-~~v~-~~g~-~  273 (523)
                         .              .......+ -.+||++.++++|.+.+.+..+.|.++-++..+.....+++ ..++ .++. .
T Consensus       217 ~~~~~~~k~~e~~~~~~~~~e~~~~~-sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~  295 (491)
T KOG1276|consen  217 KFARKRTKKAETALSAQAKKEKWTMF-SLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQR  295 (491)
T ss_pred             HHHhhcCCCccchhhhhhcccccchh-hhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCcee
Confidence               0              00112233 45899999999999999999999999999988876553432 2333 4453 3


Q ss_pred             EEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCC-C
Q psy893          274 IKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNC-E  352 (523)
Q Consensus       274 ~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~  352 (523)
                      +..+++..+.++... .+|++.  ..+.....+.++.|. ++.+|++-+.++..-         -++   .|.-++-+ +
T Consensus       296 ~~~~~~~~t~~~~k~-a~ll~~--~~~sls~~L~ei~y~-~V~vVn~~yp~~~~~---------~pl---~GFG~LvPs~  359 (491)
T KOG1276|consen  296 VVVSYDAATLPAVKL-AKLLRG--LQNSLSNALSEIPYV-PVAVVNTYYPKEKID---------LPL---QGFGLLVPSE  359 (491)
T ss_pred             eeccccccccchHHh-hhhccc--cchhhhhhhhcCCCC-ceEEEEEeccCcccc---------ccc---ccceeeccCC
Confidence            455666678888884 688876  345567788888765 889999888764210         112   12222211 1


Q ss_pred             CHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy893          353 DMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYC  432 (523)
Q Consensus       353 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~  432 (523)
                      ..+               .-..+.+.+.|...|.++|.++.+++....+.. +    ..-.....+++.+.+.+.|.+++
T Consensus       360 ~~~---------------~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~-n----~~~~~~S~ee~~~~v~~alq~~L  419 (491)
T KOG1276|consen  360 PKN---------------GFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST-N----TSLAVPSPEELVNAVTSALQKML  419 (491)
T ss_pred             CCC---------------CCceeEEEeecccCCCCCCCceEEEEecccccc-c----CcCCCCCHHHHHHHHHHHHHHHh
Confidence            100               124566667777788888888766654432110 1    01112345888999999999886


Q ss_pred             CCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCC--CCCCeEecCCCCCCCCCCCCc--
Q psy893          433 PGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFT--LIPHLLLCGSGAHPGGGVCGA--  508 (523)
Q Consensus       433 P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t--~i~~LylaG~~~~pg~g~~~a--  508 (523)
                       ++++......+.   -|.+  -.|+..+.|... +...  .         ..-+  +-.+|+++|.+. -|.++..|  
T Consensus       420 -gi~~~P~~~~v~---l~~~--ciPqy~vGh~~~-le~a--~---------~~l~~~~g~~l~l~G~~y-~Gv~vgdcI~  480 (491)
T KOG1276|consen  420 -GISNKPVSVNVH---LWKN--CIPQYTVGHDDV-LEAA--K---------SMLTDSPGLGLFLGGNHY-GGVSVGDCIE  480 (491)
T ss_pred             -CCCCCcccccce---ehhh--cccceecchHHH-HHHH--H---------HHHHhCCCCceEeecccc-CCCChhHHHH
Confidence             666554433221   1111  123444333221 1110  0         1112  234899999997 55677766  


Q ss_pred             cHHHHHHHHH
Q psy893          509 PGYIAAQMVN  518 (523)
Q Consensus       509 sG~~aA~~i~  518 (523)
                      ||+.+|.+++
T Consensus       481 sg~~~A~~v~  490 (491)
T KOG1276|consen  481 SGRKTAVEVI  490 (491)
T ss_pred             hhHHHHHhhc
Confidence            9999998875

>KOG0685|consensus

Probab=99.77  E-value=2.8e-16  Score=151.94  Aligned_cols=251  Identities=15%  Similarity=0.183  Sum_probs=141.8

Q ss_pred             ecCCCHHHHHHHHHHHHHHCC------cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH---hhC
Q psy893          224 YPEGGMGAVSQALARSAQASG------AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL---DLI  293 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G------~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~---~ll  293 (523)
                      ..+-|...+.+.|+..+.+..      .+++++++|.+|..++.+++ .|+ .||+.+.||+||+|++...+-.   +|.
T Consensus       217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF  295 (498)
T KOG0685|consen  217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLF  295 (498)
T ss_pred             echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhc
Confidence            345567888888888665432      35667799999999864554 577 9999999999999999887522   244


Q ss_pred             CCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCC
Q psy893          294 PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP  373 (523)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~  373 (523)
                       .+.+|....++++++..+ ++.++++.+.+++ |   |.     +.. . .+++...++.+++...- +    .|-+ .
T Consensus       296 -~P~LP~~K~~AIe~lgfG-tv~KiFLE~E~pf-w---p~-----~~~-~-i~~lw~~e~l~e~r~~~-~----~w~~-~  356 (498)
T KOG0685|consen  296 -VPPLPAEKQRAIERLGFG-TVNKIFLEFEEPF-W---PS-----DWN-G-IQLLWLDEDLEELRSTL-D----AWEE-D  356 (498)
T ss_pred             -CCCCCHHHHHHHHhccCC-ccceEEEEccCCC-C---CC-----CCc-e-eEEEEecCcHHHHhhhh-H----HHHh-h
Confidence             446999999999999886 7899999998764 3   11     001 1 12222244433322111 0    0111 1


Q ss_pred             eEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-----CCeEEeEecChh
Q psy893          374 MIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-----QDIVGYEILTPP  448 (523)
Q Consensus       374 ~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-----~~i~~~~~~tP~  448 (523)
                      ++.+. |.    +.+|   +++...+.. +    +...-.....|++.+.+...|.+++.+++     .-+...+...|.
T Consensus       357 ~~~f~-~v----~~~~---~vL~gWiaG-~----~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~  423 (498)
T KOG0685|consen  357 IMGFQ-PV----SWAP---NVLLGWIAG-R----EARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPF  423 (498)
T ss_pred             ceEEE-Ec----Ccch---hhhheeccC-C----cceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCc
Confidence            11221 11    1122   333333221 1    00111223458888888888888775543     112222233332


Q ss_pred             hHHHhcCCCCCccc----c-CcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCC--CCCCc--cHHHHHHHHHH
Q psy893          449 DLEKEFGLTGGNIF----H-GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGG--GVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       449 ~~~~~~~~~~G~~~----g-~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~--g~~~a--sG~~aA~~i~~  519 (523)
                      +        .||.-    + ....++.  ...|.+-    ...+.-|.+.|||..||---  -+.||  ||.+.|+++++
T Consensus       424 f--------rGSYSY~svgs~~~d~~~--~a~p~p~----~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~  489 (498)
T KOG0685|consen  424 F--------RGSYSYRSVGSDGSDTGA--LALPLPL----TLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE  489 (498)
T ss_pred             c--------CceeeEeeccccccccch--hhccCCc----cccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence            2        34320    1 0111221  1223221    33456678999999997431  23477  99999999998


Q ss_pred             Hh
Q psy893          520 LM  521 (523)
Q Consensus       520 ~~  521 (523)
                      .+
T Consensus       490 ~y  491 (498)
T KOG0685|consen  490 HY  491 (498)
T ss_pred             HH
Confidence            54

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.71  E-value=2e-16  Score=146.10  Aligned_cols=270  Identities=18%  Similarity=0.181  Sum_probs=150.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeec---ccCCceeccchhhhhh-hhh---hhhccccccccCceEee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE---IIPGFQFSRASYLLSL-LRP---HIYKDLELKKHGLKLLT   73 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~---~~~G~~~d~g~~~~~~-~~~---~~~~~lgl~~~g~~~~~   73 (523)
                      |+|++||+||+.|++. ++|+++|++.++||.++|..   ..+|+..|+|..+... ..|   .+|+++|++..     .
T Consensus        15 GsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~-----a   88 (447)
T COG2907          15 GSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK-----A   88 (447)
T ss_pred             cccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc-----c
Confidence            8999999999999987 99999999999999999874   2456678999877543 445   57888886532     1


Q ss_pred             cCCCCcccCCCCcccCCCCceeec--CCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHH
Q psy893           74 RDPRSYTPLSPDKWTNKAKSLTLG--LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL  151 (523)
Q Consensus        74 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (523)
                      .+.. +.+..+      +..+.+.  ..+..+..+-      ..-.-++|+.++.++...-..  ...+.+         
T Consensus        89 s~Ms-f~v~~d------~gglEy~g~tgl~~L~aqk------~n~l~pRf~~mlaeiLrf~r~--~~~~~d---------  144 (447)
T COG2907          89 SFMS-FSVSLD------MGGLEYSGLTGLAGLLAQK------RNLLRPRFPCMLAEILRFYRS--DLAPSD---------  144 (447)
T ss_pred             ccee-EEEEec------CCceeeccCCCccchhhcc------ccccchhHHHHHHHHHHHhhh--hccchh---------
Confidence            1111 222222      1111111  1111111100      001113344444433321100  000000         


Q ss_pred             HhccccHHHHHHHHhhcHHHHHHhhcCChHHHH-HHhhhh-hccCCCCCCCcchHHH---HHHHHhh-c--ccCCCCcee
Q psy893          152 FTRRGEMKDVYSLLTCSAFSILNDWFESEPLKA-TLLTDG-LIGAMVSPHSPSTSYV---LLHHVMG-G--AEGVKGAWA  223 (523)
Q Consensus       152 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~~g~~~  223 (523)
                               ....-..++.+||.+.--...+.. .+...+ -+++  +|......|.   ++.+... .  .......|.
T Consensus       145 ---------~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiws--tp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wr  213 (447)
T COG2907         145 ---------NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWS--TPLADASRYPACNFLVFTDNHGLLYLPKRPTWR  213 (447)
T ss_pred             ---------hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhc--CcHhhhhhhhHHHHHHHHhccCceecCCCCcee
Confidence                     000012456666654322222221 111111 1121  2211111121   1111111 0  123455677


Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERT  302 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~  302 (523)
                      .+.||+.+.++.|..-+   +++|+++++|..|.+-. +.+. +. .+|++-++|+||+++.+..++ .||+++  +++.
T Consensus       214 tV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlP-dGv~-l~~~~G~s~rFD~vViAth~dqAl-~mL~e~--sp~e  285 (447)
T COG2907         214 TVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLP-DGVV-LVNADGESRRFDAVVIATHPDQAL-ALLDEP--SPEE  285 (447)
T ss_pred             EcccchHHHHHHHhccc---cceeecCCceeeeeeCC-CceE-EecCCCCccccceeeeecChHHHH-HhcCCC--CHHH
Confidence            88999999999988844   57899999999999987 4443 44 789888999999999999975 677653  3455


Q ss_pred             HHHHhcCCCCCCeEEEE
Q psy893          303 TQAVQSIDYASPVTKIN  319 (523)
Q Consensus       303 ~~~~~~~~~~~~~~~v~  319 (523)
                      .+.++.+.|+..-.+++
T Consensus       286 ~qll~a~~Ys~n~aVlh  302 (447)
T COG2907         286 RQLLGALRYSANTAVLH  302 (447)
T ss_pred             HHHHHhhhhhhceeEEe
Confidence            66899998875444444

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.65  E-value=1.8e-15  Score=135.44  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-eEEEcCEEEEcCChHHHHHhhCCC--CCCCHH
Q psy893          226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-LEIKAKYVLSNTTAKCTLLDLIPK--GNLDER  301 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-~~~~ad~vI~a~~~~~~~~~ll~~--~~~~~~  301 (523)
                      .-||.+|++.|++-     -+|+++++|++|...+ +. +.++ .+| +...+|.||++.|++++ ..|+..  ..++..
T Consensus       104 ~pgmsalak~LAtd-----L~V~~~~rVt~v~~~~-~~-W~l~~~~g~~~~~~d~vvla~PAPQ~-~~LLt~~~~~~p~~  175 (331)
T COG3380         104 EPGMSALAKFLATD-----LTVVLETRVTEVARTD-ND-WTLHTDDGTRHTQFDDVVLAIPAPQT-ATLLTTDADDLPAA  175 (331)
T ss_pred             CcchHHHHHHHhcc-----chhhhhhhhhhheecC-Ce-eEEEecCCCcccccceEEEecCCCcc-hhhcCcccccchHH
Confidence            44688888877764     4699999999999885 44 4576 454 46789999999999986 467654  457777


Q ss_pred             HHHHHhcCCCCCCeEEEEEecCCC
Q psy893          302 TTQAVQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~~~  325 (523)
                      ++..+..+.|. +.+.+.+++..+
T Consensus       176 l~~~~a~V~y~-Pc~s~~lg~~q~  198 (331)
T COG3380         176 LRAALADVVYA-PCWSAVLGYPQP  198 (331)
T ss_pred             HHHhhccceeh-hHHHHHhcCCcc
Confidence            88888888776 455555666643

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.48  E-value=5.5e-13  Score=135.82  Aligned_cols=50  Identities=24%  Similarity=0.360  Sum_probs=43.9

Q ss_pred             CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccchhh
Q psy893            1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRASYL   50 (523)
Q Consensus         1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g~~~   50 (523)
                      |||++||+||++|++.    |++|+|||+++.+||++.++. ..+||.++.|...
T Consensus        29 GaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~   83 (576)
T PRK13977         29 GSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM   83 (576)
T ss_pred             CCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc
Confidence            8999999999999996    689999999999999998754 3579999888654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.37  E-value=4.1e-13  Score=98.19  Aligned_cols=52  Identities=40%  Similarity=0.644  Sum_probs=46.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhh
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSL   53 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~   53 (523)
                      |||++||+||++|+++|++|+|+|+++++||+++++. .+|+.+|.|++++..
T Consensus         3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~   54 (68)
T PF13450_consen    3 GAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFP   54 (68)
T ss_dssp             S-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEE
T ss_pred             eeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeC
Confidence            8999999999999999999999999999999999987 588999999888644

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.19  E-value=1.4e-10  Score=116.04  Aligned_cols=62  Identities=39%  Similarity=0.537  Sum_probs=53.2

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++.+|   ...+++.|.+.+++.|++|+.+++|++|..++ +++++|+ .+|+ +.||+||+|++++.
T Consensus       138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             ccccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccccc-cccceeEecccccc
Confidence            66677   78999999999999999999999999999998 8888888 6775 99999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.11  E-value=2.5e-09  Score=102.62  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=54.3

Q ss_pred             CCceeecC-CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          219 KGAWAYPE-GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       219 ~g~~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      .|.. ||. ...+.|+++|...+++.||+|+++++|.+|..++ .. ..+. .+|+++.||.+|+|++-
T Consensus       100 ~Gr~-Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~-f~l~t~~g~~i~~d~lilAtGG  165 (408)
T COG2081         100 LGRM-FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SG-FRLDTSSGETVKCDSLILATGG  165 (408)
T ss_pred             Ccee-cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ce-EEEEcCCCCEEEccEEEEecCC
Confidence            4554 677 7788999999999999999999999999999986 33 3566 77878999999999883

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.11  E-value=6.7e-10  Score=109.68  Aligned_cols=59  Identities=24%  Similarity=0.314  Sum_probs=48.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCce-eccchhhhhhhhhhhhc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQ-FSRASYLLSLLRPHIYK   60 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~-~d~g~~~~~~~~~~~~~   60 (523)
                      |||++||++|++|++.|.+|+|+|+++.+||.|.+.. .+|.. .+.|+|++....+.+++
T Consensus         8 GaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~   67 (377)
T TIGR00031         8 GAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWD   67 (377)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHH
Confidence            8999999999999999999999999999999998765 45654 47888876554554444

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.06  E-value=1.1e-07  Score=96.11  Aligned_cols=56  Identities=25%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++++.+++|.+|..++ +++ .|+ .++ ++.+|+||+|++.+.
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCCC-EEEeCEEEEecCcch
Confidence            35788899999999999999999999999876 554 466 445 799999999999875

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.06  E-value=9.7e-09  Score=102.63  Aligned_cols=248  Identities=19%  Similarity=0.224  Sum_probs=131.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc--------------------CCceeccchhhhhhhhhhhhc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII--------------------PGFQFSRASYLLSLLRPHIYK   60 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~--------------------~G~~~d~g~~~~~~~~~~~~~   60 (523)
                      |.|+.-...|..|+++|++|+.+|+|+.-||...++...                    ..|..|.-+.++. ....+++
T Consensus        11 GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~-a~g~LV~   89 (438)
T PF00996_consen   11 GTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY-ARGPLVK   89 (438)
T ss_dssp             --SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE-TTSHHHH
T ss_pred             CCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh-ccCHHHH
Confidence            788888899999999999999999999999999887621                    0122222222211 1112222


Q ss_pred             ---cccccccCceEeecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893           61 ---DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD  137 (523)
Q Consensus        61 ---~lgl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (523)
                         .-++.++ +++...+.. | ++..      ++...+|......... ..+...+...+.+|+..+..+.+.      
T Consensus        90 lLi~S~V~rY-LEFk~V~~~-~-v~~~------~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~------  153 (438)
T PF00996_consen   90 LLISSGVTRY-LEFKAVDGS-Y-VYKN------GKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEED------  153 (438)
T ss_dssp             HHHHCTGGGG-SEEEEESEE-E-EEET------TEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTT------
T ss_pred             HHHhCCcccc-eEEEEccee-E-EEeC------CEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccC------
Confidence               2255565 677665532 1 1111      5666666654321111 112223454555555554333211      


Q ss_pred             cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhh-hhhccCCCCCCCcc-hHH-HHHHHHhhc
Q psy893          138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLT-DGLIGAMVSPHSPS-TSY-VLLHHVMGG  214 (523)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~~~  214 (523)
                       .+.....                .+....++.+++.++-.++.++.++.. .++...-....++. ... .+..|+-+.
T Consensus       154 -~~~~~~~----------------~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Sl  216 (438)
T PF00996_consen  154 -DPSTHKG----------------LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSL  216 (438)
T ss_dssp             -BGGGSTT----------------G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHH
T ss_pred             -Ccchhhc----------------cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHH
Confidence             0000000                001135777888887778888777753 22221100001111 111 122222222


Q ss_pred             ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEc
Q psy893          215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSN  282 (523)
Q Consensus       215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a  282 (523)
                      ..+..+.+-||.-|.+.|++++.+.+.-.|+...+|++|.+|..++++++.+|..+|++++|++||..
T Consensus       217 gryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d  284 (438)
T PF00996_consen  217 GRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD  284 (438)
T ss_dssp             CCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred             hccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence            22233455689999999999999999999999999999999999654888888888999999999964

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.06  E-value=3.5e-07  Score=93.21  Aligned_cols=57  Identities=30%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..++..|++.+.++|++++.+++|++|...+++++++|+ .+| ++.+++||++++.+.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            467788999999999999999999999865326666777 556 799999999888875

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.01  E-value=2.6e-07  Score=93.22  Aligned_cols=60  Identities=30%  Similarity=0.389  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..++..+.+.+.+.|++++.+++|++|..++ +.+ .|+ .+| ++.||+||+|++++.  ..|++
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~--~~l~~  209 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWV--KDLLP  209 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcch--hhhcc
Confidence            5778888888888999999999999999876 543 466 555 789999999999986  35554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.95  E-value=1.8e-08  Score=100.01  Aligned_cols=58  Identities=33%  Similarity=0.401  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeE-EEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLE-IKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~-~~ad~vI~a~~~~~  287 (523)
                      ...++.+|++.+.++|++|++|++|+.|+..+ ++++.+. .+|++ ++|+.||.+++...
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhH
Confidence            56899999999999999999999999999987 4355455 67765 99999999998775

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.94  E-value=5.7e-09  Score=104.57  Aligned_cols=62  Identities=27%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             ecCC-CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEe-CCeEEEcCEEEEcCChH
Q psy893          224 YPEG-GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       224 ~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~-~g~~~~ad~vI~a~~~~  286 (523)
                      ||.- -...+.+.|.+.+++.|++|+++++|.+|..++ +++..|+. +++++.||.||+|++-.
T Consensus       102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~  165 (409)
T PF03486_consen  102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGK  165 (409)
T ss_dssp             EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----S
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCC
Confidence            6654 467899999999999999999999999999987 77677884 88899999999998753

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.93  E-value=1.5e-08  Score=102.68  Aligned_cols=56  Identities=25%  Similarity=0.286  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.++|.+.+++.|++++++++|.+|..++ +++ .|+ .+| ++.||.||+|++.+.
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence            46899999999999999999999999998876 544 466 555 799999999999875

>KOG2820|consensus

Probab=98.89  E-value=1.2e-06  Score=81.89  Aligned_cols=64  Identities=22%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      ..-.+++...++++|+.++-+..|..|...++ +..+.|+ ++|..|.|+.+|+|+++|.  ++||+.
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~  218 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT  218 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence            45677888999999999999999999985322 5556777 8898899999999999997  578874

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.86  E-value=9.8e-08  Score=97.66  Aligned_cols=58  Identities=22%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|.+.++++|++|+++++|++|..++ +++++|+.++.++.||+||+|++++.
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGGVITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCcEEeCCEEEECCCcch
Confidence            45788999999999999999999999999877 66666764455899999999999986

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.83  E-value=3.6e-08  Score=103.64  Aligned_cols=58  Identities=26%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ...++.++++.+.++|++|+.+++|++|..++ +++++|+ .   +|  .++.|+.||+|+++|.
T Consensus       148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            35788889999999999999999999999887 7887776 3   23  3789999999999986

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.83  E-value=1.1e-07  Score=97.09  Aligned_cols=58  Identities=19%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC----CeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN----GLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~----g~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|.+.+++.|++|+.+++|++|..++ +.++... .+    +.+++||+||+|++++.
T Consensus       196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            45788899999999999999999999999866 5543222 22    23789999999999986

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.73  E-value=2.2e-07  Score=96.02  Aligned_cols=55  Identities=20%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|++.+++.|++|+.+++|++|.. + + .+.|+ .+| ++.||+||+|++++.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~-~~~v~t~~g-~v~A~~VV~Atga~s  237 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-G-Q-PAVVRTPDG-QVTADKVVLALNAWM  237 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-C-C-ceEEEeCCc-EEECCEEEEcccccc
Confidence            468899999999999999999999999975 3 3 24566 555 799999999999885

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG1439|consensus

Probab=98.69  E-value=3.9e-06  Score=80.43  Aligned_cols=249  Identities=16%  Similarity=0.156  Sum_probs=131.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc------C-C-------------ceeccchhhhhhhhhhhhc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII------P-G-------------FQFSRASYLLSLLRPHIYK   60 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~------~-G-------------~~~d~g~~~~~~~~~~~~~   60 (523)
                      |-|+.=..-+..|+.+|.+|+.+|||+.-||..+|....      + +             +..|.-+-++ +....+++
T Consensus        11 GTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l-mAn~~Lvk   89 (440)
T KOG1439|consen   11 GTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL-MANGELVK   89 (440)
T ss_pred             cCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh-hccchHHH
Confidence            445555556677899999999999999999998876511      0 0             0111111111 11123333


Q ss_pred             cc---cccccCceEeecCCCCcccCCCCcccCCCCceeecCCHH-HHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhh
Q psy893           61 DL---ELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQ-KNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLF  136 (523)
Q Consensus        61 ~l---gl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (523)
                      .|   ++.++ +++...+...  ++ .     +|+.+.++.+.. .+...+..++  +...+.+|+..+..+.+.-..  
T Consensus        90 ~Li~T~V~~Y-L~fk~i~gsf--v~-~-----~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~~~--  156 (440)
T KOG1439|consen   90 ILIHTGVTRY-LEFKSISGSF--VY-K-----KGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEEDPK--  156 (440)
T ss_pred             HHHHhchhhh-eEEEeecceE--EE-E-----CCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhccc--
Confidence            33   44444 5555544321  11 2     166677776532 2222222221  344455555555554432111  


Q ss_pred             hcCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh-hccCCCCCCCcc--hHHHHHHHHhh
Q psy893          137 DIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG-LIGAMVSPHSPS--TSYVLLHHVMG  213 (523)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~  213 (523)
                           .+..+                .....++.+++.+++.......+..... .+.....-+.+.  +.--+.-++-+
T Consensus       157 -----~~~~~----------------~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S  215 (440)
T KOG1439|consen  157 -----TWQGY----------------DLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRS  215 (440)
T ss_pred             -----ccccc----------------ccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHH
Confidence                 11100                0001255667777776554443332111 111000011111  11111112111


Q ss_pred             cccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCC
Q psy893          214 GAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTT  284 (523)
Q Consensus       214 ~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~  284 (523)
                      ...+....+-||..|.+.|++.+++...-.|++..+|.++.+|....++++.+|+..++...+..||+..+
T Consensus       216 ~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpS  286 (440)
T KOG1439|consen  216 FARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPS  286 (440)
T ss_pred             HhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCc
Confidence            11222223558999999999999999988899999999999999944388887775565677888887533

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.69  E-value=8.2e-08  Score=89.05  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=52.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecc-cCCcee-ccchhhhhhhhhhhhccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-IPGFQF-SRASYLLSLLRPHIYKDL   62 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~-~~G~~~-d~g~~~~~~~~~~~~~~l   62 (523)
                      |||++|+..|..|++.|++|+|+||++++||-|-+... ..|..+ -.|+|+|+..+..+|+-+
T Consensus         8 GaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv   71 (374)
T COG0562           8 GAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYV   71 (374)
T ss_pred             CCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHH
Confidence            89999999999999999999999999999999987652 256654 679999877777777665

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.69  E-value=2.7e-07  Score=95.02  Aligned_cols=57  Identities=18%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHH----CC--cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQA----SG--AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++.+|.+.+++    .|  ++|+++++|+.|..++ +..+.|+ .+| ++.||+||++++++.
T Consensus       210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhH
Confidence            46899999999998    78  7899999999999886 5566677 555 799999999999986

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.67  E-value=4.6e-07  Score=90.97  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...++..|.+.+.+. |++|+.+++|.+|..   +   .|+ .+| +++||+||+|++++.  ..|++
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g-~i~a~~VV~A~G~~s--~~l~~  202 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRG-DVHADQVFVCPGADF--ETLFP  202 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCC-cEEeCEEEECCCCCh--hhhCc
Confidence            357888899888775 999999999999963   3   355 555 578999999999986  35654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.64  E-value=5.6e-07  Score=89.52  Aligned_cols=47  Identities=26%  Similarity=0.393  Sum_probs=39.7

Q ss_pred             CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccc
Q psy893            1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRA   47 (523)
Q Consensus         1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g   47 (523)
                      |+|+++|+||.+|-|.    |.+|+|||+++.+||.+.+.. ...||..-.|
T Consensus         9 GsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgG   60 (500)
T PF06100_consen    9 GSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGG   60 (500)
T ss_pred             CCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCC
Confidence            8999999999999986    579999999999999987654 3467776555

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.63  E-value=8.9e-07  Score=90.86  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=51.9

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-e-CCeEEEcCEEEEcCChH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-T-NGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~-~g~~~~ad~vI~a~~~~  286 (523)
                      ++.++...+++.|.+.+++.|++|+++++|++|..++ ++++++|. . ++.++.|+.||+|++..
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~  182 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL  182 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence            4556677899999999999999999999999998862 27788877 3 34588999999999853

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.62  E-value=6.2e-07  Score=92.35  Aligned_cols=58  Identities=22%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|+ .  +++  .+.++.||+|++...
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~  192 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG  192 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence            478899999999999999999999999986437888877 3  343  468899999988654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.61  E-value=1.6e-06  Score=90.04  Aligned_cols=61  Identities=33%  Similarity=0.322  Sum_probs=50.6

Q ss_pred             cCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChH
Q psy893          225 PEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAK  286 (523)
Q Consensus       225 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~  286 (523)
                      +.++...+...|.+.+++.|++|+++++|++|..++ +++++|+ .  ++  ..+.|+.||+|++..
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~  191 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGF  191 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence            445567899999999999999999999999999877 8888887 3  23  367899999999854

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.59  E-value=7.7e-07  Score=96.23  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++.+|   ...++.+|.+.+++ |++|+.+++|++|..++ ++++ |+ .+|..+.||+||+|++++.
T Consensus       399 ~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        399 YPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             eCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc
Confidence            56565   35889999999988 99999999999999876 6554 66 6666678999999999986

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.58  E-value=4.9e-07  Score=92.48  Aligned_cols=59  Identities=34%  Similarity=0.443  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      +...+.+.|.+.++++|++|+++++|+++..++ ++|++|. .   +|+  ++.|+.||+|++-..
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~  203 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFG  203 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence            456899999999999999999999999999988 8999998 5   455  578999999988765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.58  E-value=3.7e-06  Score=88.51  Aligned_cols=62  Identities=24%  Similarity=0.385  Sum_probs=50.2

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~  287 (523)
                      +..+| +.|+..|.+.+++.|++|+++++|+++..++ ++|++|.  .+|+  .+.| +.||+|++-..
T Consensus       212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~  278 (564)
T PRK12845        212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFD  278 (564)
T ss_pred             ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence            44556 8999999999999999999999999998776 8999987  4553  3556 47999888654

>PRK07121 hypothetical protein; Validated

Probab=98.57  E-value=2.4e-06  Score=89.22  Aligned_cols=60  Identities=30%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC  287 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~  287 (523)
                      +...+.+.|.+.+++.|++|+++++|++|..++++++++|+  .+++  .+.| +.||+|++...
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            45678999999999999999999999999987537898887  3443  5788 99999998654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.52  E-value=1.9e-06  Score=90.00  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--e-CCe--EEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--T-NGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~-~g~--~~~ad~vI~a~~~~  286 (523)
                      ..+++.|.+.+++.|++|+++++|++|..++ +++++|+  . +++  ++.|+.||++++..
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~  250 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKINGKETKTISSKAVVVTTGGF  250 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence            4688899999999999999999999998876 8888876  2 332  68899999999854

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.51  E-value=4.4e-06  Score=88.72  Aligned_cols=57  Identities=25%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe-EEEcC-EEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL-EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~-~~~ad-~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|+ .  +++ .+.++ .||+|++...
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            6789999999999999999999999999887 8888887 3  233 46786 6999888664

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.47  E-value=4.2e-06  Score=88.70  Aligned_cols=59  Identities=24%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~  287 (523)
                      ...++..|.+.+++.|++|+++++|++|..+++++|++|.  .+|+  .+.|+ .||+|++-..
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~  275 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD  275 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence            3578888888999999999999999999997448999987  4554  46787 4999888654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.47  E-value=2.7e-06  Score=86.56  Aligned_cols=61  Identities=25%  Similarity=0.336  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+|+...+..+.++|.+++..++|+++..++ + +++|+ .|   |+  +++|+.||.|++||.  .+++.
T Consensus       164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~--d~i~~  230 (532)
T COG0578         164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWV--DEILE  230 (532)
T ss_pred             HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccH--HHHHH
Confidence            3788888888999999999999999999998 6 88888 43   33  578999999999997  35543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.46  E-value=3e-06  Score=79.98  Aligned_cols=59  Identities=32%  Similarity=0.437  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC-----------CeEEEcCEEEEcCChHHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN-----------GLEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-----------g~~~~ad~vI~a~~~~~~  288 (523)
                      ..+...|.+.+.+.|++|+.++.|++|..++++++.+|. ..           ..++.|+.||.|++.+..
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            477888999999999999999999999886624787776 31           247899999999987653

>TIGR00275 flavoprotein, HI0933 family

Probab=98.46  E-value=5.3e-06  Score=83.99  Aligned_cols=58  Identities=28%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ....+.+.|.+.+++.|++|+++++|++|..++ + .+.|+.+++++.+|.||+|++...
T Consensus       103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       103 SAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETSGGEYEADKVILATGGLS  160 (400)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEECCcEEEcCEEEECCCCcc
Confidence            457899999999999999999999999998765 4 344555566899999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.43  E-value=7.1e-06  Score=87.58  Aligned_cols=59  Identities=25%  Similarity=0.346  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...++.+|++.++++|++|+.+++|++|..++ ++++++|+ .   +++  ++.||.||+|+++|.
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            45899999999999999999999999998763 26777765 2   344  579999999999995

>KOG2844|consensus

Probab=98.42  E-value=6.6e-05  Score=76.56  Aligned_cols=62  Identities=29%  Similarity=0.437  Sum_probs=53.3

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .|..|   ...++.+|+..+++.|+.|..|++|++|.... ++..+|. .-| .+++.+||.|++.|+
T Consensus       178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCc-ceecceEEechhHHH
Confidence            44444   46899999999999999999999999999987 6667898 555 789999999999997

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.40  E-value=5.9e-06  Score=77.71  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC--CeEEEE-eC-----------CeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDK--RASGVV-TN-----------GLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~--~~~~v~-~~-----------g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+.|++|+.++.|++|..++ +  ++.+|. ..           ..+++|+.||.|++...
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            3677888888889999999999999999877 5  677876 31           24789999999988654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.40  E-value=1.8e-05  Score=84.09  Aligned_cols=57  Identities=30%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~  287 (523)
                      ..++..|.+.+++.|++|+++++|++|..++ +++++|+  .++.  ++.| +.||+|++.+.
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            5788999999999999999999999998876 8888887  3333  5788 89999998875

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.39  E-value=9.9e-06  Score=83.73  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~  287 (523)
                      .+.+|   ...++.+|.+.+++.|++|+++++|++|..++++.+. |+    .+|  .+++||+||+|++.+.
T Consensus       169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence            44444   4689999999999999999999999999986523332 33    223  3689999999999886

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.36  E-value=8.4e-06  Score=86.05  Aligned_cols=57  Identities=30%  Similarity=0.408  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~  287 (523)
                      ..|+..|.+.+++.|++|+++++|++|..++ ++|++|+  .+|+  .+.|+ .||+|++-..
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~  269 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVRDGREVLIRARRGVLLASGGFG  269 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence            4788999999999999999999999999887 8999988  4564  46785 6998887654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.34  E-value=8.5e-06  Score=82.47  Aligned_cols=55  Identities=29%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+++.|++.++++| ..+..+++|..+..+ . +++.|. .+| ++.||+||+|++++.
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g-~i~a~~vv~a~G~~~  212 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG-TIEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc-cEEeCEEEEcCchHH
Confidence            688999999999999 566669999999876 1 456677 555 499999999999986

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.34  E-value=3.7e-07  Score=80.27  Aligned_cols=34  Identities=50%  Similarity=0.796  Sum_probs=32.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||++||++|.+|+|+||+-.+||-++
T Consensus        37 GaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          37 GAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             CcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            8999999999999999999999999999999875

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.34  E-value=1.9e-05  Score=83.90  Aligned_cols=58  Identities=26%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEc-CEEEEcCChHHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKA-KYVLSNTTAKCT  288 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~a-d~vI~a~~~~~~  288 (523)
                      ..+...|.+.++++|++|+++++|++|..++ +++++|.  .+|+  ++.| +.||+|++....
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            4788999999999999999999999998876 8899987  4444  4676 689999987653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.30  E-value=5.6e-06  Score=84.69  Aligned_cols=61  Identities=26%  Similarity=0.310  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhh
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~l  292 (523)
                      .+-+.|.+.+++.|++|+.+++|++|..++ +++++++.+|+++.||.||.|.+....+.+-
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~  169 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADGDVIEAKTVILADGVNSILAEK  169 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCCcEEECCEEEEEeCCCHHHHHH
Confidence            556677888888999999999999998876 7666566667789999999999887644443

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.28  E-value=1.3e-05  Score=81.98  Aligned_cols=58  Identities=12%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++. |++|+++++|++|..++ +++++|.  .+++  ++.|+.||+|++...
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            346888999888764 89999999999998876 8888865  4554  588999999988743

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.28  E-value=2.6e-05  Score=80.74  Aligned_cols=58  Identities=24%  Similarity=0.373  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.++|.+.+++.| ++|+++++|++|..++++.+. |. .   +|+  +++|++||++++.+.
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence            4689999999999987 799999999999986524343 33 2   343  689999999999886

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.27  E-value=1.8e-05  Score=77.42  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+++.|.+.+++.|++|+++++|..|+..+ +.+.+|+ .+|+++.+|+||+|.+...
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccCcch
Confidence            56789999999999999999999999999988 7777888 8999999999999988654

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.27  E-value=2.8e-05  Score=79.98  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEE-EE--eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASG-VV--TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~-v~--~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.++|.+.+.+ .|++|+++++|..|..++++.++. ++  .+|+  +++||+||+|++.+.
T Consensus       183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            45788999998865 489999999999998873255432 21  2342  689999999999986

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.26  E-value=1.2e-05  Score=81.44  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      .+-+.|++.+++.|++++.++.|..+..++ ++++.++ .++.+++|+.||.|.++...+.+.+..
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~  160 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL  160 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence            556678999999999999999999999988 5554444 555789999999999988766665543

>PRK12839 hypothetical protein; Provisional

Probab=98.25  E-value=7.7e-05  Score=78.88  Aligned_cols=58  Identities=29%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe-EE-EcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL-EI-KAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~-~~-~ad~vI~a~~~~~  287 (523)
                      ..|+..|.+.+++.|++|+.+++|++|..++++++++|.   .+|+ .+ .++.||+|++...
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~  276 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP  276 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence            478889999999999999999999999876438899987   2443 33 4488999988764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.25  E-value=2.2e-05  Score=83.10  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+.|++|+.++.++++..++ |+|+||. .   +|+  .+.|+.||+|++-..
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            4688889998888899999999999999987 9999987 3   333  578999999998754

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.23  E-value=1.4e-05  Score=80.94  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+.+.| ++|+.+++|++|..++ +++ .|+ .+|+++.+|.||.|.+.+..+.+.+.
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l~  170 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGADGANSKVRQLAG  170 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence            67888899888888 9999999999998876 655 466 78888999999999888766666554

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.23  E-value=3.5e-05  Score=80.57  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~~  287 (523)
                      ..++..+++.+.++|++++.+++|++|..++ +. ++|+ .+   |+  ++.|+.||.|+++|.
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARREN-GL-WHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            5778888888999999999999999998865 54 4555 32   43  689999999999986

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.23  E-value=2.5e-05  Score=82.99  Aligned_cols=57  Identities=25%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++.|++|+.++.|++|..++ +++++|.    .+|+  .+.|+.||+|++...
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            4688889998988999999999999999887 8888876    2454  578999999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.20  E-value=3.3e-05  Score=82.15  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHH----CCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQA----SGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~----~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~  286 (523)
                      .+...|.+.+++    .|++|++++.|++|..+++++++||. .   +|+  .+.|+.||+|++-.
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            556666655544    37999999999999886536899987 3   453  57899999999865

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=2.8e-05  Score=83.26  Aligned_cols=55  Identities=25%  Similarity=0.326  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      +.+.|.+.+++.|++|++++.|++|..++ ++|+||. .   +|+  .+.|+.||+|++-..
T Consensus       172 l~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        172 AYQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            34667778888899999999999999877 8899987 3   454  578999999998754

>PRK07588 hypothetical protein; Provisional

Probab=98.19  E-value=1.3e-05  Score=81.34  Aligned_cols=60  Identities=10%  Similarity=0.157  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      .|.+.|.+.+. .|++|+++++|++|+.++ +.+. |+ .+|+++++|.||.|-+.+...++.+
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~  164 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV  164 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence            45555666553 379999999999999876 5543 66 7888899999999999887666654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.17  E-value=7.3e-05  Score=79.42  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..|...|.+.+.+.|++|++++.|+++..+++++++||. .   +|+  .+.|+.||+|++-..
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3578899999888889999999999999986338899987 2   454  578999999988764

>PRK10015 oxidoreductase; Provisional

Probab=98.16  E-value=2.6e-05  Score=79.70  Aligned_cols=60  Identities=18%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHh
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLD  291 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~  291 (523)
                      .+-+.|.+.+++.|++++.+++|+.|..++ +++++|..++.++.||.||.|.+....+.+
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~  168 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGDDILEANVVILADGVNSMLGR  168 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCCeEEECCEEEEccCcchhhhc
Confidence            455667888888999999999999998876 777666655668999999999997664433

>PRK06847 hypothetical protein; Provisional

Probab=98.15  E-value=2e-05  Score=79.34  Aligned_cols=62  Identities=26%  Similarity=0.314  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++ .|. .+|+++.+|.||.|.+.+....+.+
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l  169 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDD-DGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLV  169 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEE-EEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence            3677888888888899999999999998876 544 466 7888899999999999876555444

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.15  E-value=3.7e-05  Score=81.29  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~  287 (523)
                      ...+...|.+.+++.|++|+++++|++|..++ ++|++|+  .+|+  .+.|+ .||+|++-..
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~  269 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAESGEPQLIRARRGVILASGGFE  269 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence            34688889999999999999999999999877 8898887  3554  47786 5998776543

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.15  E-value=5.5e-05  Score=79.27  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+. |++|+++++|++|..++ ++|++|+  .+|+  ++.|+ .||+|++-..
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVERGGERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence            36777777777665 89999999999999886 8999987  4553  57886 6888888653

>PRK06184 hypothetical protein; Provisional

Probab=98.15  E-value=2.1e-05  Score=82.46  Aligned_cols=63  Identities=10%  Similarity=0.162  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+.|++|+++++|++|..++ +.++...   .++++++||.||.|.+.+...++.+.
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg  175 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG  175 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence            455677888888899999999999999877 5554322   34568999999999999987777764

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.14  E-value=2.1e-05  Score=79.54  Aligned_cols=63  Identities=22%  Similarity=0.350  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+.+ .|++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+.+.+.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYV-RVTLDNGQQLRAKLLIAADGANSKVRELLS  169 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence            4678888888888 499999999999998876 554 466 67878999999999998876666654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07190 hypothetical protein; Provisional

Probab=98.14  E-value=3.8e-05  Score=79.69  Aligned_cols=62  Identities=19%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++.|++|+++++|++|..++ +.++ +. .+|++++|+.||.|.+.+...++.+.
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg  172 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN  172 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence            455667778888999999999999999887 5543 44 67778999999999999887777664

>PRK07045 putative monooxygenase; Reviewed

Probab=98.12  E-value=4.6e-05  Score=77.19  Aligned_cols=62  Identities=15%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhh
Q psy893          231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~l  292 (523)
                      .|.+.|.+.+.+ .|++++++++|+.|..++++.++.|+ .+|+++++|.||.|-+.....++.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~  170 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD  170 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence            566777777754 47999999999999987635445677 788899999999999988777774

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.11  E-value=4.2e-05  Score=77.30  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e-CCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T-NGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...|-+.|.+.+.+.+ ++++.+++|+.|..++ +.+. ++ . +|++++||.||-|=+.+..+++.+.
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            3478889999998887 8999999999999998 6776 66 6 9999999999999888887788776

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.11  E-value=3.5e-05  Score=78.12  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+.+.+.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g  176 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIAADGAASTLRELAG  176 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence            3677888888888999999999999999876 554 366 67888999999999998766666553

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.10  E-value=1.9e-06  Score=76.40  Aligned_cols=34  Identities=53%  Similarity=0.754  Sum_probs=28.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||++|+++|++|+|+|++..+||.++
T Consensus        24 GaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   24 GAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             --SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             CCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            8999999999999999999999999999999865

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.09  E-value=5.3e-05  Score=79.24  Aligned_cols=56  Identities=13%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC----eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG----LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g----~~~~ad~vI~a~~~~~  287 (523)
                      ..++..+++.++++|++++.+++|++|..++ +. ++|+ .++    .++.|+.||.|+++|.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREG-GL-WRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            5788888888999999999999999999875 43 4565 443    3589999999999986

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.07  E-value=0.00015  Score=76.46  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e------CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T------NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~------~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+.++.|.+|..++++++++|. .      ++  ..+.|+.||+|++...
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            578899999999999999999999999887536888876 4      12  3578999999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.06  E-value=9.3e-05  Score=79.47  Aligned_cols=59  Identities=22%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ....+...|.+.+.+.|++|+.++.|.+|..++ ++++||. .   +|+  .+.|+.||+|++...
T Consensus       156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            345678889998999999999999999999877 8888877 3   454  467999999998764

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.06  E-value=9.9e-05  Score=84.50  Aligned_cols=58  Identities=22%  Similarity=0.286  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHC---CcEEEeCceeeEEEECCC----C----CeEEEE-e-----CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS---GAQLFTSQTVTEITLDSD----K----RASGVV-T-----NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~---G~~i~~~~~V~~I~~~~~----~----~~~~v~-~-----~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.   |++|+++++|+++..+++    |    +|+||. .     +|+  .+.|+.||+|++-..
T Consensus       544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~  620 (1167)
T PTZ00306        544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS  620 (1167)
T ss_pred             HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence            45677777777654   899999999999998631    2    788887 3     454  578999999988654

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.05  E-value=3.1e-05  Score=78.88  Aligned_cols=63  Identities=22%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+.+.|++|+.+++|++|..++ +.+ .|+ .+|+++.||.||.|.+.+..+.+.+.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g  174 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRD-EGV-TVTLSDGSVLEARLLVAADGARSKLRELAG  174 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence            4778888998888999999999999998876 544 466 77888999999999988766666654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.05  E-value=7e-05  Score=72.58  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++.|++++++++|++|..++ +++. +.  .++.+++||.||.|.+....+.+.++
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~  155 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLG  155 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence            567788888888999999999999998877 5543 43  44568999999999998765555443

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.04  E-value=0.00014  Score=77.78  Aligned_cols=57  Identities=16%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEE-CCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITL-DSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++.|++|+.++.|+++.. ++ +++.||.    .+|+  .+.|+.||+|++-..
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            47889999999999999999999999988 45 8898886    2454  578999999987653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.03  E-value=0.00018  Score=76.70  Aligned_cols=58  Identities=21%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++.|++|+.++.|+++..+++++|+||. .   +|+  .+.|+.||+|++-..
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            468899999999999999999999999886536788886 2   454  678999999988754

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.03  E-value=0.00022  Score=73.77  Aligned_cols=56  Identities=18%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++++.+ .|+.+..++ +++++|..+++.+.|+.||+|++.+.
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFLDGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEECCEEEEeCeEEECCCcCc
Confidence            478899999999999999876 788888766 78888876677899999999999875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.02  E-value=5e-05  Score=77.38  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      .+.+.|.+.+++.|++|+.+++|++|+.++ +.+ .|+ .+|++++||.||.|.+.+...++++..
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~  176 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSG-DDW-LLTLADGRQLRAPLVVAADGANSAVRRLAGC  176 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence            567788888888899999999999999876 554 466 788889999999999998877777653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.02  E-value=0.00017  Score=77.15  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+.|++|+.++.+.++..++++++.||. .   +|+  .+.|+.||+|++-..
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            478899999888899999999999998876338888887 2   454  578999999988754

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.02  E-value=0.00023  Score=76.03  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.| ++|+.++.|.+|..++ +++++|.    .+|+  .+.|+.||+|++...
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            357778888888876 9999999999998877 8888874    2453  688999999999765

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=8.2e-05  Score=79.06  Aligned_cols=58  Identities=24%  Similarity=0.342  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..+.+.|.+.+++.|++|+.++.|.+|..++ +++.||.    .+|+  .+.|+.||+|++...
T Consensus       134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            35788999999999999999999999998876 8888775    2554  578999999998864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.99  E-value=4.7e-05  Score=76.84  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~  286 (523)
                      .+.+.|.+.+++.|++|+++++|.++..++ +++..+. .+|+  .++||.||+|++..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            799999999999999999999999999877 7776665 4553  58999999998854

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.98  E-value=0.00011  Score=77.43  Aligned_cols=58  Identities=16%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECC-CCCeEEEE--eCCe--EEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDS-DKRASGVV--TNGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~~~~~~v~--~~g~--~~~ad~vI~a~~~~  286 (523)
                      -..+.+.|.+.+++. |++|++++.|.++..++ +++++||.  .+|+  .+.|+.||+|++-.
T Consensus       133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            357888999888765 89999999999998863 27888887  5564  37899999999874

>PRK08275 putative oxidoreductase; Provisional

Probab=97.98  E-value=0.00015  Score=76.79  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+.++.|++|..++++++.+|. .   +|+  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            468889999999999999999999999987327888876 2   454  478999999998764

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.97  E-value=0.00021  Score=75.56  Aligned_cols=34  Identities=50%  Similarity=0.658  Sum_probs=31.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC--CCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH--VLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~   34 (523)
                      |+|.+||+||..++++|.+|+||||.+  .+||.+.
T Consensus        11 G~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834         11 GAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            899999999999999999999999999  7899764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.97  E-value=0.00018  Score=76.03  Aligned_cols=58  Identities=16%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--e--CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|++++.|+++..++++++++|.  .  +|+  .+.|+.||+|++-..
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            578889999898899999999999999887623488876  2  454  578999999998754

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.96  E-value=8.7e-05  Score=75.38  Aligned_cols=61  Identities=15%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      .+.+.|.+.+.+.+ ++++.+++|++|..++ +.+. |+ .+|+++.||.||.|.+.+....+.+
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~  172 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL  172 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence            46677888887775 8999999999998776 5543 66 7888899999999999887655444

>TIGR00551 nadB L-aspartate oxidase

Probab=97.96  E-value=0.00035  Score=72.87  Aligned_cols=57  Identities=18%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eC-C--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TN-G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++ .|++|+.++.|++|..++ +++++|. .+ +  ..+.|+.||+|++...
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            4788999999987 689999999999998876 7888887 32 3  3679999999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06834 hypothetical protein; Provisional

Probab=97.94  E-value=8.9e-05  Score=77.05  Aligned_cols=62  Identities=16%  Similarity=0.300  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++.|++|+.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+....+++.
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v-~v~~~~g~~i~a~~vVgADG~~S~vR~~lg  163 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGV-DVELSDGRTLRAQYLVGCDGGRSLVRKAAG  163 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence            566778888888899999999999999887 544 355 67778999999999988876666654

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=0.00041  Score=73.87  Aligned_cols=58  Identities=24%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..|.+.|.+.+.+.|++++.++.|.++..++++++.||. .   +|+  .+.|+.||+|++-..
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            468899999888999999999999999986437888886 2   454  578999999988754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=0.00021  Score=76.47  Aligned_cols=58  Identities=22%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHC--------C-----cEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQAS--------G-----AQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~--------G-----~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.        |     ++|+.++.|.+|..++ +++.+|.    .+|+  .+.|+.||+|++...
T Consensus       137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            346888888888776        7     9999999999999876 8888875    2454  578999999999743

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.93  E-value=7.4e-05  Score=76.42  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-e-CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-T-NG--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+.+. |++++++++|++|..++ +.+ .|+ . ++  .+++||.||.|-+.+...++.+.
T Consensus       122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~  188 (415)
T PRK07364        122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAA-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG  188 (415)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-Cee-EEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence            5677788877775 69999999999998876 544 355 3 23  36899999999998876666654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.93  E-value=8.8e-05  Score=75.18  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEE-CCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITL-DSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+.+.|++++++++|++|.. ++ +. ..|+  .+|+  +++||.||-|-+.+...++.++
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~  170 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS-DR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP  170 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-Cc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence            4566677777788999999999999986 33 33 3455  4664  6899999999888877777764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.91  E-value=6.8e-05  Score=75.95  Aligned_cols=62  Identities=15%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.| ++++ ++.|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+++.+.
T Consensus       111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~~  174 (388)
T PRK07608        111 SLIERALWAALRFQPNLTWF-PARAQGLEVDP-DAA-TLTLADGQVLRADLVVGADGAHSWVRSQAG  174 (388)
T ss_pred             HHHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeE-EEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence            367788888888887 8998 99999998776 544 466 67778999999999998765666654

>PLN02815 L-aspartate oxidase

Probab=97.90  E-value=0.00023  Score=75.42  Aligned_cols=58  Identities=14%  Similarity=0.197  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCC---CeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDK---RASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~---~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++. |++|+.++.+.++..++++   +|+||. .   +|+  .+.|+.||+|++-..
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  222 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG  222 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence            46888898888776 8999999999999985424   277876 2   454  568999999998654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.90  E-value=0.00036  Score=72.54  Aligned_cols=52  Identities=21%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             HCC-cEEEeCceeeEEEECCC--CCeEEEE-e---CCe--EEEcCEEEEcCChHHHHHhhC
Q psy893          242 ASG-AQLFTSQTVTEITLDSD--KRASGVV-T---NGL--EIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       242 ~~G-~~i~~~~~V~~I~~~~~--~~~~~v~-~---~g~--~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      +.+ .+|++++.|.+|..+++  +++++|+ .   +|+  +++|+.||+|++...+.+-|+
T Consensus       225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL  285 (544)
T TIGR02462       225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV  285 (544)
T ss_pred             cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence            344 89999999999998753  3577776 2   454  578999999999988754443

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.90  E-value=0.00015  Score=73.39  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CCe--EEEcCEEEEcCChHHHHHhhCCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NGL--EIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~--~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      ..+...|.+.+.+.|+++++++.++++...++.. ..|+ . +|+  +++||.||-|-+.+...++.++.
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~  171 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA  171 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence            3566677777878899999999988886533133 3466 4 775  68999999999988777777653

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08244 hypothetical protein; Provisional

Probab=97.89  E-value=0.00019  Score=75.08  Aligned_cols=62  Identities=19%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCC-eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNG-LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g-~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++.|++|+.+++|++|..++ ++++ |+   .+| ++++||.||.|.+.+...++++.
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg  166 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG  166 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence            455667777778899999999999998877 5543 33   256 47999999999998876677664

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.88  E-value=0.00021  Score=74.84  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++. |++|+.++.|++|..++ +++++|.  .+++  .+.|+.||+|++-..
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            357889999988876 89999999999998776 8888887  3343  578999999988754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.88  E-value=0.0003  Score=74.86  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCC----cEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASG----AQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G----~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..|...|.+.+++.+    ++++.++.++++..+++++|+||. .   +++  .+.|+.||+|++-..
T Consensus       133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            467788887776544    789999999999885438899988 3   343  468999999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.87  E-value=0.00024  Score=75.56  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+ .|++|+.++.|.+|..++ ++++||.    .+|+  .+.|+.||+|++-..
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            4688888888876 589999999999998877 8888876    2554  578999999998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.84  E-value=0.00024  Score=75.28  Aligned_cols=63  Identities=22%  Similarity=0.271  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeE-EEE-eCCe-EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRAS-GVV-TNGL-EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~-~v~-~~g~-~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+. |++|+++++|++|..++ +.+. .++ .+|. +++||.||.|.+.+...++++.
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg  192 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG  192 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence            3445666777665 68999999999999876 5443 223 3454 6899999999998877777765

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.84  E-value=0.00022  Score=74.99  Aligned_cols=58  Identities=28%  Similarity=0.306  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ...++.++++.+.++|++|+.+++|++|..++ +++++|+ .   +|  .++.|+.||+|+++|.
T Consensus       127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            45788999999999999999999999999877 7777766 3   34  2689999999999996

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.82  E-value=0.00015  Score=73.13  Aligned_cols=61  Identities=25%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++.+|   ...++.+|.+.+++ |++|+.+++|.+|+.++ ++ +.|+ .+|+.+.||+||+|++++.
T Consensus       126 ~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       126 FPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             eCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            55555   36899999999988 99999999999999876 55 4566 6776789999999999986

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG2404|consensus

Probab=97.81  E-value=0.00025  Score=66.24  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |+|++||+|+..+-..|-.|+++|++...||-+
T Consensus        16 GgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   16 GGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             CCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            899999999999999998899999999999975

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.80  E-value=0.00019  Score=73.06  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+. |++|+++++|++|..++ +.+ .|+ .+|++++||.||.|-+.+..+++.+.
T Consensus       112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~  175 (405)
T PRK08850        112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD  175 (405)
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence            4555677777664 69999999999998876 544 466 78889999999999998776666654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.78  E-value=0.00061  Score=72.29  Aligned_cols=58  Identities=21%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..|.+.|.+.+.+. |++++.++.|++|..++ +++.||.    .+|+  .+.|+.||+|++-..
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            357888998888775 79999999999999887 8888876    2553  678999999998754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.76  E-value=0.00032  Score=71.09  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+. |++++.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+..+++.+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~  176 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG  176 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence            4566777777776 89999999999998776 543 466 67878999999999998877767664

>PRK06185 hypothetical protein; Provisional

Probab=97.74  E-value=0.00034  Score=71.33  Aligned_cols=63  Identities=25%  Similarity=0.268  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe-EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL-EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~-~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+.+. |++++.+++|++|..++ +++++|+   .+|+ +++||.||.|.+.+..+++.+.
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g  176 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG  176 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence            5666777777664 79999999999999887 7776565   3564 7899999999998876666664

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.72  E-value=0.00083  Score=71.52  Aligned_cols=58  Identities=26%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCC---CCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSD---KRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+.++.|.+|..+++   ++++||.    .+|+  .+.|+.||+|++-..
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            57889999999999999999999999987642   6788886    2454  578999999998764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.72  E-value=0.00086  Score=71.31  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..|.+.|.+.+.+. |++++.++.|++|..++ +++.||.    .+|+  .+.|+.||+|++-..
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            46778888877775 79999999999999877 8888875    2553  678999999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.71  E-value=0.0004  Score=73.44  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+. |++|+++++|++|+.++ ++++ |+ .  +|  ++++||.||-|-+.+...++.+.
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg  181 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG  181 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence            3445666767664 89999999999999887 5543 44 3  56  47899999999999887777774

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.71  E-value=0.0006  Score=71.34  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.++ .|++|+.++.|.+|..++ +++.+|. .  +|+  .+.|+.||+|++...
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            468888888776 689999999999998876 8888887 3  343  678999999998765

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.68  E-value=0.00028  Score=66.17  Aligned_cols=33  Identities=52%  Similarity=0.664  Sum_probs=29.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC--CCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH--VLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~--~~GG~~   33 (523)
                      |||++||.||..||.+|++|+|+|+..  .+||-+
T Consensus        12 gaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573          12 GAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             CccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            899999999999999999999999853  466654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.68  E-value=0.00021  Score=69.38  Aligned_cols=68  Identities=29%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             ecCCCHHHHHHHHHHHHHHC-CcEEEeCceeeEEEEC--CCCCeEEEE-e--CCe----EEEcCEEEEcCChHHHHHhhC
Q psy893          224 YPEGGMGAVSQALARSAQAS-GAQLFTSQTVTEITLD--SDKRASGVV-T--NGL----EIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~--~~~~~~~v~-~--~g~----~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ++.|--......+...+.++ |.+|++++.|++|..+  + +++++|+ .  ++.    .+.++.||+++++..+- +||
T Consensus       186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~-~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp-~LL  263 (296)
T PF00732_consen  186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG-GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP-RLL  263 (296)
T ss_dssp             ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS-TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH-HHH
T ss_pred             ccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc-cceeeeeeeecCCcceeeeccceeEEeccCCCCCh-hhh
Confidence            33443333444444333344 8999999999999774  5 8888988 2  333    46789999999998864 554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0026  Score=60.83  Aligned_cols=61  Identities=31%  Similarity=0.468  Sum_probs=49.1

Q ss_pred             eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCC
Q psy893          222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTT  284 (523)
Q Consensus       222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~  284 (523)
                      +-||+-|.+.|++.+++...-.|+++.+|+++.+|...+ . |.+|..++.+..|.+||+.-.
T Consensus       221 yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk-~-v~~v~~~~~~~ka~KiI~~~~  281 (434)
T COG5044         221 YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETK-D-VETVDKGSLTQKAGKIISSPT  281 (434)
T ss_pred             ceeeccCchhhhHHHHHhhhccCceeecCcchhhhcccc-c-eeeeecCcceeecCcccCCcc
Confidence            348888899999999999988899999999999998865 3 334555556788999887543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.53  E-value=7.6e-05  Score=68.03  Aligned_cols=54  Identities=22%  Similarity=0.196  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+.+-|.+.+++.+.+++++++|++|..++ ++ +.|+ .++++++||+||+|++..
T Consensus        83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG-DG-WTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHHTTGGEETS--EEEEEEET-TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHHhhcCcccccCCEEEEEEEec-cE-EEEEEEecceeeeeeEEEeeecc
Confidence            344556666677788899999999999987 66 5677 777789999999999853

...

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.48  E-value=8.8e-05  Score=72.97  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=34.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE   36 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   36 (523)
                      |||++||+||..||+.|++|.++||++.+||+....
T Consensus       131 GGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~  166 (622)
T COG1148         131 GGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             cCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence            899999999999999999999999999999997654

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.46  E-value=0.0051  Score=65.42  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCC--CCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSD--KRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+...+...+.+.+++|+.++.|+++..+++  |+++||.    .+|+  .+.|+.||+|++.+.
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            4455566666677789999999999998642  5788886    2454  578999999999874

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN02697 lycopene epsilon cyclase

Probab=97.46  E-value=0.0012  Score=68.81  Aligned_cols=56  Identities=23%  Similarity=0.213  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+.|+++ ++++|++|..++ +.+..+. .+|.++.|+.||.|.+++.
T Consensus       192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        192 TLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            467788888888889998 788999998876 5554445 6788899999999999887

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.45  E-value=0.0039  Score=65.76  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECC-----CCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDS-----DKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-----~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+. |++|+.++.|.++..++     ++++++|. .   +|+  .+.|+.||+|++...
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            46778888888765 89999999999998753     26788887 2   354  578999999998764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.43  E-value=0.00035  Score=66.56  Aligned_cols=47  Identities=26%  Similarity=0.383  Sum_probs=38.9

Q ss_pred             CCChhHHHHHHHHHHc----CCcEEEEccCCCCCcceeeec-ccCCceeccc
Q psy893            1 EAGHNGLVSAAYLARA----GLSVAVLERRHVLGGAAVTEE-IIPGFQFSRA   47 (523)
Q Consensus         1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~-~~~G~~~d~g   47 (523)
                      |+|++||++|..|-|.    |.++.|+|--+..||...... ..+||....|
T Consensus        29 G~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGG   80 (587)
T COG4716          29 GGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGG   80 (587)
T ss_pred             ccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCc
Confidence            8999999999999875    679999999999999876543 3567776555

>KOG2415|consensus

Probab=97.42  E-value=0.00061  Score=65.89  Aligned_cols=58  Identities=21%  Similarity=0.440  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------C---------eEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------G---------LEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g---------~~~~ad~vI~a~~~~  286 (523)
                      ...++..|.+.+++.|++|.-+..+.++..++||.|.||. .|      |         -++.|+..|+|-+.+
T Consensus       182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~  255 (621)
T KOG2415|consen  182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH  255 (621)
T ss_pred             HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence            5689999999999999999999999999998878888886 22      2         146788888876655

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.37  E-value=0.00015  Score=80.70  Aligned_cols=35  Identities=40%  Similarity=0.566  Sum_probs=33.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||+.|+++||+|+|+|+++.+||.++.
T Consensus       313 GsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y  347 (944)
T PRK12779        313 GSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY  347 (944)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence            89999999999999999999999999999999753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.34  E-value=0.00018  Score=73.98  Aligned_cols=35  Identities=46%  Similarity=0.610  Sum_probs=33.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+||++.+||....
T Consensus        17 GAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172         17 GAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            89999999999999999999999999999998653

>TIGR01810 betA choline dehydrogenase

Probab=97.30  E-value=0.0026  Score=67.23  Aligned_cols=54  Identities=26%  Similarity=0.282  Sum_probs=40.3

Q ss_pred             HHHHHHHH-HCCcEEEeCceeeEEEECCCCCeEEEE-e-CCe---EEEcCEEEEcCChHHH
Q psy893          234 QALARSAQ-ASGAQLFTSQTVTEITLDSDKRASGVV-T-NGL---EIKAKYVLSNTTAKCT  288 (523)
Q Consensus       234 ~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~---~~~ad~vI~a~~~~~~  288 (523)
                      ..+...+. ..|.+|++++.|++|..++ +++++|+ . +++   .+.++.||+++++..+
T Consensus       197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S  256 (532)
T TIGR01810       197 RAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINS  256 (532)
T ss_pred             HHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC
Confidence            33333333 4569999999999999987 8999998 3 332   2478899999998654

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK09897 hypothetical protein; Provisional

Probab=97.28  E-value=0.0046  Score=64.45  Aligned_cols=54  Identities=11%  Similarity=0.054  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHCC--cEEEeCceeeEEEECCCCCeEEEE-eC-CeEEEcCEEEEcCCh
Q psy893          230 GAVSQALARSAQASG--AQLFTSQTVTEITLDSDKRASGVV-TN-GLEIKAKYVLSNTTA  285 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~~~~ad~vI~a~~~  285 (523)
                      +...+.+.+.+.+.|  ++++.+++|+.|..++ +++ .|+ .+ |..+.||+||+|++.
T Consensus       107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~-~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGV-MLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEE-EEEECCCCeEEEcCEEEECCCC
Confidence            455566777777777  7888999999998876 554 355 34 467899999999985

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.24  E-value=0.0039  Score=64.17  Aligned_cols=57  Identities=25%  Similarity=0.461  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++++.++ |+.|..++++.++.|+ .+|++++||.||=|++...
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            3677788899999999998885 8888777657778888 7899999999999988654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.22  E-value=0.0039  Score=54.08  Aligned_cols=52  Identities=23%  Similarity=0.233  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHCCcEEE-eCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          231 AVSQALARSAQASGAQLF-TSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~-~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      ...+.+.+.+ ..|++|. .+.+|+.|...+ ++. .|. .+|..+.||+||+|++.
T Consensus       102 ~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  102 DRFDRLLARL-PAGITVRHVRAEVVDIRRDD-DGY-RVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             HHHHHHHHhh-cCCcEEEEEeeEEEEEEEcC-CcE-EEEECCCCEEEeCEEEECCCC
Confidence            3344444444 4465663 567999999987 553 466 88889999999999874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.20  E-value=0.007  Score=67.89  Aligned_cols=57  Identities=21%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHC----CcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS----GAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~----G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+.    ++++..+..+.++..++ |+++||.    .+|+  .+.|+.||+|++-..
T Consensus       139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  205 (897)
T PRK13800        139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-GRAVGAAALNTRTGEFVTVGAKAVILATGPCG  205 (897)
T ss_pred             hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence            45666777766654    56777777777888776 8888876    2464  478999999998754

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.19  E-value=0.002  Score=64.04  Aligned_cols=64  Identities=30%  Similarity=0.446  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHHHHHhhCCC
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      .+.|.+.|.+.+.+. |++++++++|+.|...+|+.. .|.    ..|  .+++|+.|++.++...+  .|+..
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqk  250 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQK  250 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH--HHHHH
Confidence            578999999999998 899999999999999885543 343    223  47899999999998874  35543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.19  E-value=0.00031  Score=77.75  Aligned_cols=35  Identities=40%  Similarity=0.634  Sum_probs=33.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||++|++.|++|+|+|+.+.+||.++.
T Consensus       544 GGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       544 GAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            89999999999999999999999999999999854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.15  E-value=0.00033  Score=71.72  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---CeEEEcCEEEEcCChHHHHHhhCC
Q psy893          239 SAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       239 ~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+++.|++|++++.|.++..++ +++++|+ .+   ..++.|+.||=|++-..+ ..+..
T Consensus        99 ~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l-~~~aG  156 (428)
T PF12831_consen   99 MLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETKSGRKEIRAKVFIDATGDGDL-AALAG  156 (428)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccc-ccccc
Confidence            3357799999999999999998 8999988 33   347899999988886553 34443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.14  E-value=0.0058  Score=63.98  Aligned_cols=56  Identities=25%  Similarity=0.414  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+...|.+.+++. |++++ ...|+++..++++++.+|. .+|..+.|+.||+|++.+.
T Consensus        97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            5667777878787 56775 4578888766227888998 7888899999999999884

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.11  E-value=0.0011  Score=65.71  Aligned_cols=53  Identities=26%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-~~~ad~vI~a~~~~~  287 (523)
                      ..++.+...+.++++|++|++++.|++|..+.      |+ .+|+ ++.++.||.|++...
T Consensus       208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcC
Confidence            45788888899999999999999999998653      55 5666 599999999998764

>KOG1399|consensus

Probab=97.07  E-value=0.00042  Score=70.18  Aligned_cols=35  Identities=40%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||.+||+||..|.+.|++|+|+||.+.+||.-..
T Consensus        13 GAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y   47 (448)
T KOG1399|consen   13 GAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY   47 (448)
T ss_pred             CcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence            89999999999999999999999999999997543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.06  E-value=0.00044  Score=71.72  Aligned_cols=56  Identities=21%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +.+ .++ .+|+++++|.||++++...
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGD-DGV-IVHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-CeE-EEEECCCCEEEeCEEEEeecCCc
Confidence            4678889999999999999999999998765 443 355 6777899999999988654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.06  E-value=0.00053  Score=70.85  Aligned_cols=34  Identities=38%  Similarity=0.579  Sum_probs=32.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus       147 G~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        147 GSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            8999999999999999999999999999999875

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.05  E-value=0.0027  Score=62.84  Aligned_cols=62  Identities=21%  Similarity=0.398  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...++..|++.+.++|++++.+++|++|..++ +++++|. .+| +++||+||+|++++.  ..|.+
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~~--~~l~~  198 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPSG-DVQADQVVLAAGAWA--GELLP  198 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCCC-EEECCEEEEcCChhh--hhccc
Confidence            47899999999999999999999999999877 7777777 556 799999999999997  34543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.03  E-value=0.00051  Score=68.40  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+-+.|.+.+++.|++|+++++|+.+..++ ++++.+.   .+|+  +++||.||-|-+.+...++.+.
T Consensus       111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  111 PELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             HHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred             HHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence            4678889999999999999999999999887 5554333   3453  6899999999998887777664

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.97  E-value=0.00067  Score=74.88  Aligned_cols=35  Identities=46%  Similarity=0.665  Sum_probs=33.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||+.|+++|++|+|+|+.+.+||.++.
T Consensus       546 GgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        546 GAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            89999999999999999999999999999999864

>PLN02661 Putative thiazole synthesis

Probab=96.96  E-value=0.00068  Score=65.94  Aligned_cols=33  Identities=36%  Similarity=0.527  Sum_probs=30.4

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|+++ |++|+|+||+..+||..
T Consensus        99 GaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         99 GAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            8999999999999986 89999999999998854

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.93  E-value=0.00067  Score=70.34  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|++++.|++|..++ +.+ .++ .   +|  +++.+|.||++++...
T Consensus       215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        215 TETAKTLQKALTKQGMKFKLGSKVTGATAGA-DGV-SLTLEPAAGGAAETLQADYVLVAIGRRP  276 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEECcEEEEEEEcC-CeE-EEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence            4577888999999999999999999998764 333 232 2   23  4789999999988654

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.93  E-value=0.014  Score=61.29  Aligned_cols=57  Identities=25%  Similarity=0.323  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+...|.+.+.+ .+.+|..+..|.++..++++++.+|.    .+|+  .+.++.||+|++...
T Consensus       139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            566677777766 56688999999999988634477776    3454  457889999987654

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.92  E-value=0.00088  Score=68.91  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CCChhHHHHHHHHHH--cCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLAR--AGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|++  .|++|+|+|+.+.+||.++.
T Consensus        33 GaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         33 GSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            899999999999997  79999999999999998864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.91  E-value=0.00079  Score=69.43  Aligned_cols=56  Identities=27%  Similarity=0.306  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..++ +.+ .|. .+|+++.+|.||++++...
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       207 DDMRALLARNMEGRGIRIHPQTSLTSITKTD-DGL-KVTLSHGEEIVADVVLFATGRSP  263 (446)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence            4677788888999999999999999998765 333 355 6788899999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.91  E-value=0.00078  Score=68.59  Aligned_cols=35  Identities=43%  Similarity=0.560  Sum_probs=33.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+.+.+||++..
T Consensus       130 GaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         130 GAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            89999999999999999999999999999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.87  E-value=0.00097  Score=72.17  Aligned_cols=35  Identities=40%  Similarity=0.598  Sum_probs=33.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus       334 GaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        334 GAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            89999999999999999999999999999998753

>PRK06753 hypothetical protein; Provisional

Probab=96.86  E-value=0.00086  Score=67.47  Aligned_cols=60  Identities=10%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|.+.|.+.+.  +.+|+++++|++|..++ +++ .|+ .+|+++++|.||-|-+.+...++.+.
T Consensus        99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~~  159 (373)
T PRK06753         99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHFADGESEAFDLCIGADGIHSKVRQSVN  159 (373)
T ss_pred             HHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEECCCCEEecCEEEECCCcchHHHHHhC
Confidence            45555555543  35899999999998776 554 466 78888999999999998877777664

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.86  E-value=0.00091  Score=69.40  Aligned_cols=56  Identities=20%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..++ +++. +. .+|  +++.+|.||++++...
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence            4677888899999999999999999998776 5543 55 566  4799999999987654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.84  E-value=0.00092  Score=75.23  Aligned_cols=35  Identities=40%  Similarity=0.581  Sum_probs=33.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+.+.+||.++.
T Consensus       437 G~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        437 GSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            89999999999999999999999999999998753

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.81  E-value=0.0011  Score=67.22  Aligned_cols=63  Identities=21%  Similarity=0.310  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE---eC-----C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV---TN-----G--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~---~~-----g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+.|++++.++ +..|.... .+..+.|+   .+     |  .+++|+.||.|.+....+.+.+.
T Consensus        94 ~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g  167 (398)
T TIGR02028        94 VLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEID  167 (398)
T ss_pred             HHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhC
Confidence            455667888888999998775 77775321 13333444   22     3  37899999999998876666554

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.81  E-value=0.001  Score=68.94  Aligned_cols=56  Identities=18%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +.+ .+. .+|   +++.+|.||++++...
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            4677888899999999999999999998765 443 354 555   6789999999988654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.80  E-value=0.00099  Score=69.61  Aligned_cols=34  Identities=35%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|.+.|++|+++||++.+||.=+
T Consensus         8 GaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    8 GAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             --SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             CccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            8999999999999999999999999999999743

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0012  Score=67.73  Aligned_cols=34  Identities=35%  Similarity=0.591  Sum_probs=31.7

Q ss_pred             CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~   34 (523)
                      |||++||++|++|.++|.. ++||||++.+||.=+
T Consensus        15 GaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~   49 (443)
T COG2072          15 GAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR   49 (443)
T ss_pred             CCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence            8999999999999999998 999999999998633

>PRK07236 hypothetical protein; Provisional

Probab=96.77  E-value=0.0011  Score=66.92  Aligned_cols=48  Identities=13%  Similarity=0.208  Sum_probs=38.6

Q ss_pred             CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          244 GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       244 G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      +++|+++++|++|+.++ +.+ .|+ .+|++++||.||.|-+.+...++.+
T Consensus       112 ~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~vR~~l  160 (386)
T PRK07236        112 AERYHLGETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTVRAQL  160 (386)
T ss_pred             CcEEEcCCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchHHHHh
Confidence            36799999999999876 554 366 8888999999999988776666654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.77  E-value=0.0013  Score=63.89  Aligned_cols=32  Identities=41%  Similarity=0.586  Sum_probs=29.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||..|++.|++|+|+|+++ +||.+
T Consensus         7 G~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~   38 (300)
T TIGR01292         7 GAGPAGLTAAIYAARANLKTLIIEGME-PGGQL   38 (300)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence            899999999999999999999999987 77754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.77  E-value=0.0012  Score=68.06  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +++ .+..+|+++.+|.||++++...
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~~g~~i~~D~viva~G~~p  253 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVTEDETYRFDALLYATGRKP  253 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEECCeEEEcCEEEEeeCCCC
Confidence            4566777788889999999999999998755 433 2335677899999999987654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.76  E-value=0.0012  Score=66.86  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+.+.|++++ .+.|..|..++ +..+.|+ .+|++++|+.||.|.+.+.
T Consensus        85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence            4677788888888899885 66898888774 3444566 6777899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06116 glutathione reductase; Validated

Probab=96.76  E-value=0.00098  Score=68.90  Aligned_cols=57  Identities=9%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|.+|..++ +....|+ .+|+++.+|.||++++...
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence            4677888999999999999999999998765 3323456 6788899999999987543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.75  E-value=0.0014  Score=67.53  Aligned_cols=34  Identities=47%  Similarity=0.612  Sum_probs=32.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus       140 G~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       140 GAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            8999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.74  E-value=0.0012  Score=68.01  Aligned_cols=57  Identities=7%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..++ +....|+ .+| +++.+|.||++++...
T Consensus       207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       207 SMISETITEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence            4677888899999999999999999998754 3323455 667 5799999999988654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=96.74  E-value=0.036  Score=54.93  Aligned_cols=118  Identities=22%  Similarity=0.163  Sum_probs=70.8

Q ss_pred             HHHHHHhhcHHHHHHhhcCChHHH-HHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHHHHH
Q psy893          160 DVYSLLTCSAFSILNDWFESEPLK-ATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALAR  238 (523)
Q Consensus       160 ~~~~~~~~s~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~  238 (523)
                      ++.+....+..+++.+..-++.+. +++..... ..|.......    .++.+.+.+....|.| -++||...+++.|.+
T Consensus        63 ~~~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tR-vNYgQ~~~i~----a~~G~vSla~a~~gl~-sV~GGN~qI~~~ll~  136 (368)
T PF07156_consen   63 DFLNLTKVTGEEYLKENGISERFINELVQAATR-VNYGQNVNIH----AFAGLVSLAGATGGLW-SVEGGNWQIFEGLLE  136 (368)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHhheE-eecccccchh----hhhhheeeeeccCCce-EecCCHHHHHHHHHH
Confidence            455566778888887765455444 45543332 2222212221    1222223233345777 799999999999998


Q ss_pred             HHHHCCcEEEeCceeeEE-EECCCCC-eEEEE-e--CCe-EEEcCEEEEcCChHH
Q psy893          239 SAQASGAQLFTSQTVTEI-TLDSDKR-ASGVV-T--NGL-EIKAKYVLSNTTAKC  287 (523)
Q Consensus       239 ~~~~~G~~i~~~~~V~~I-~~~~~~~-~~~v~-~--~g~-~~~ad~vI~a~~~~~  287 (523)
                         ..|.++ ++++|++| ...+++. ...|. .  .+. .-.+|.||+|+|...
T Consensus       137 ---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~  187 (368)
T PF07156_consen  137 ---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ  187 (368)
T ss_pred             ---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence               567889 99999999 4433232 23344 2  222 335799999999864

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.72  E-value=0.0014  Score=68.09  Aligned_cols=55  Identities=9%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC--C--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN--G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~--g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++. +++++++.|++|..++ +.+ .++ .+  |  +++.+|.||++++...
T Consensus       215 ~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~-~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~p  274 (471)
T PRK06467        215 KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE-DGI-YVTMEGKKAPAEPQRYDAVLVAVGRVP  274 (471)
T ss_pred             HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC-CEE-EEEEEeCCCcceEEEeCEEEEeecccc
Confidence            46677888888888 9999999999998765 443 344 33  2  3689999999988764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.71  E-value=0.0014  Score=67.51  Aligned_cols=55  Identities=11%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..++ +.+ .+. .++ ++.+|.||++++...
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~g-~i~~D~vl~a~G~~p  254 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEHA-QLAVDALLIASGRQP  254 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence            4677888999999999999999999998765 443 344 444 689999999987654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.71  E-value=0.0017  Score=66.04  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=31.9

Q ss_pred             CCChhHHHHHHHHH-HcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLA-RAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La-~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||.||.+|+ +.|++|+|+||.+.+||..+.
T Consensus        46 GaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         46 GAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            89999999999764 679999999999999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.70  E-value=0.0015  Score=70.37  Aligned_cols=35  Identities=43%  Similarity=0.601  Sum_probs=33.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus       317 G~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        317 GAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             CcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            89999999999999999999999999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.69  E-value=0.0015  Score=68.03  Aligned_cols=57  Identities=25%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC-CCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD-SDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..+ + +++..+. .+|  +++.+|.||++++...
T Consensus       221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p  281 (472)
T PRK05976        221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP  281 (472)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence            467788888999999999999999999862 3 4444444 566  3689999999988764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.68  E-value=0.0016  Score=71.77  Aligned_cols=34  Identities=38%  Similarity=0.545  Sum_probs=32.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+.+.+||...
T Consensus       438 GaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        438 GSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            8999999999999999999999999999999875

>PRK09126 hypothetical protein; Provisional

Probab=96.68  E-value=0.0015  Score=66.32  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHH-HCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQ-ASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+. ..|++|+.+++|++|..++ +.+ .|+ .+|++++||.||.|.+.+....+.+.
T Consensus       111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g  174 (392)
T PRK09126        111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSATRRQLG  174 (392)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence            34455555554 4589999999999998876 544 466 78889999999999998765566553

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.66  E-value=0.0015  Score=66.38  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE----eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV----TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..|.+.|.+.+.+. |++++++++|++|..++ +++. |+    .++++++||.||-|-+.+...++.++
T Consensus       107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~  174 (400)
T PRK06475        107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG  174 (400)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence            36777788777664 79999999999998876 5543 33    23357899999999998887777764

>PRK07538 hypothetical protein; Provisional

Probab=96.66  E-value=0.0015  Score=66.63  Aligned_cols=64  Identities=11%  Similarity=0.165  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHH-CC-cEEEeCceeeEEEECCCCCeEEEE--eCC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQA-SG-AQLFTSQTVTEITLDSDKRASGVV--TNG--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~~~~~~v~--~~g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|-+.|.+.+.+ .| .+|+++++|++|..++++.++.+.  .+|  ++++||.||-|-+.+...++.+.
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~  172 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY  172 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence            566667777655 46 479999999999887623222232  122  47899999999998877777664

>KOG2853|consensus

Probab=96.65  E-value=0.044  Score=52.08  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHc----CCcEEEEccCCC---------CCcceeeec
Q psy893            1 EAGHNGLVSAAYLARA----GLSVAVLERRHV---------LGGAAVTEE   37 (523)
Q Consensus         1 GaG~~GL~aA~~La~~----G~~V~vlE~~~~---------~GG~~~s~~   37 (523)
                      |||..|+++|+.|.++    |.+|+|+|+++.         +||-|+.|.
T Consensus        93 GGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS  142 (509)
T KOG2853|consen   93 GGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS  142 (509)
T ss_pred             CCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence            8999999999999753    799999999874         556555544

>PRK08013 oxidoreductase; Provisional

Probab=96.62  E-value=0.0015  Score=66.30  Aligned_cols=62  Identities=19%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|-+.|.+.+.+. |++++++++|++|+.++ +.+ .|+ .+|++++||.||-|-+.+...++.+.
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~~  175 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKDGSMLTARLVVGADGANSWLRNKAD  175 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence            5667788877775 79999999999998876 444 466 78889999999999998877777764

>KOG2614|consensus

Probab=96.62  E-value=0.0016  Score=63.44  Aligned_cols=29  Identities=41%  Similarity=0.515  Sum_probs=27.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|||+...+
T Consensus         9 GgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    9 GGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            89999999999999999999999997655

>PRK05868 hypothetical protein; Validated

Probab=96.61  E-value=0.0019  Score=64.92  Aligned_cols=61  Identities=8%  Similarity=0.134  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|.+.|.+.+ ..|++++++++|++|..++ +++ .|+ .+|++++||.||-|-+.+...++++.
T Consensus       106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~-~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~~  167 (372)
T PRK05868        106 DLVELLYGAT-QPSVEYLFDDSISTLQDDG-DSV-RVTFERAAAREFDLVIGADGLHSNVRRLVF  167 (372)
T ss_pred             HHHHHHHHhc-cCCcEEEeCCEEEEEEecC-CeE-EEEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence            3444444433 4589999999999998765 544 466 88889999999999998877777764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.61  E-value=0.0018  Score=66.26  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      .|.+.|.+.+.  .+.++++++|++|..++ +++ .|+ .+|+++++|.||.|-+.+...++.+
T Consensus       106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l  165 (414)
T TIGR03219       106 DFLDALLKHLP--EGIASFGKRATQIEEQA-EEV-QVLFTDGTEYRCDLLIGADGIKSALRDYV  165 (414)
T ss_pred             HHHHHHHHhCC--CceEEcCCEEEEEEecC-CcE-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence            56667776653  35689999999999876 554 466 7888899999999999988776665

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.60  E-value=0.0017  Score=65.59  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|-..|.+.+.+. |++++.+++|++|+.++ +.+ .|+ .+|++++||.||.|-+.+...++.+.
T Consensus       111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~g  174 (384)
T PRK08849        111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGN-RVTLESGAEIEAKWVIGADGANSQVRQLAG  174 (384)
T ss_pred             HHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeE-EEEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence            3455666666554 69999999999999876 544 366 78889999999999998877666654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.59  E-value=0.002  Score=65.22  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------G--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+.|++++.+ .|++|..++ +.+ .|+ .+      |  .+++||.||.|.+....+.+.+.
T Consensus        93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg  162 (388)
T TIGR02023        93 VFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG  162 (388)
T ss_pred             HHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence            55667788888889999765 699998776 544 355 42      2  37899999999998766666554

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.56  E-value=0.0023  Score=66.49  Aligned_cols=34  Identities=44%  Similarity=0.619  Sum_probs=32.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+.+.+||...
T Consensus       150 GaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        150 GSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            8999999999999999999999999999999764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.56  E-value=0.0022  Score=69.19  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=32.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+++.+||...
T Consensus       200 GaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        200 GAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            8999999999999999999999999999999875

>TIGR02053 MerA mercuric reductase

Probab=96.55  E-value=0.0021  Score=66.69  Aligned_cols=56  Identities=18%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +. ..++ .   +++++.+|.||++++...
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG-GG-KIITVEKPGGQGEVEADELLVATGRRP  266 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CE-EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence            4577788888999999999999999998765 43 2344 2   235799999999987554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.53  E-value=0.002  Score=66.21  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eC-------C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TN-------G--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~-------g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+.|++++.+ .|++|....+ +..+.|+ .+       |  .+++||.||-|-+....+.+.+.
T Consensus       133 ~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg  206 (450)
T PLN00093        133 VLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDID  206 (450)
T ss_pred             HHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhC
Confidence            45567888888899999765 5878875321 2223344 21       3  37899999999998776666654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.52  E-value=0.0023  Score=66.46  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ +.+ .++ .  +|  +++.+|.||++++...
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~p  273 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSKKDGKAQELEADKVLQAIGFAP  273 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEecCCCeEEEEeCEEEECcCccc
Confidence            4677889999999999999999999998755 433 343 3  56  3789999999988654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.52  E-value=0.0022  Score=66.58  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++. ++|+++++|.+|..++ +..+.++ .++  +++.+|.||++++...
T Consensus       210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~-~~~v~~~~~~~~~~~i~~D~vi~a~G~~p  268 (460)
T PRK06292        210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG-DEKVEELEKGGKTETIEADYVLVATGRRP  268 (460)
T ss_pred             HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC-CceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence            45777888888888 9999999999998765 3112232 233  4789999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.48  E-value=0.0027  Score=65.76  Aligned_cols=35  Identities=43%  Similarity=0.633  Sum_probs=33.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus       148 G~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~  182 (467)
T TIGR01318       148 GAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF  182 (467)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence            89999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.47  E-value=0.0023  Score=64.76  Aligned_cols=63  Identities=10%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+.+.++..+++++|++|..++ +.+. |+ .+|++++||.||.|.+.+..+.+.+.
T Consensus       111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g  174 (388)
T PRK07494        111 WLLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVGADGRNSPVREAAG  174 (388)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence            3677788888877765458999999998876 5553 66 77888999999999998766666654

>PRK14694 putative mercuric reductase; Provisional

Probab=96.46  E-value=0.0025  Score=66.16  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..++ +. ..+..++.++.+|.||++++...
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~-~~v~~~~~~i~~D~vi~a~G~~p  273 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG-RE-FILETNAGTLRAEQLLVATGRTP  273 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CE-EEEEECCCEEEeCEEEEccCCCC
Confidence            5678889999999999999999999998765 43 23443444799999999987654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.46  E-value=0.0022  Score=64.60  Aligned_cols=62  Identities=10%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..|-+.|.+.+.+.+ ++++++++|++|..++ +.+ .|. .++ +++||.||.|-+.+...++.+.
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~~-~~~adlvIgADG~~S~vR~~l~  167 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYS-IIKFDDK-QIKCNLLIICDGANSKVRSHYF  167 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeE-EEEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence            477788888888875 8999999999998876 554 366 665 8999999999998877777664

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.44  E-value=0.0029  Score=65.50  Aligned_cols=34  Identities=41%  Similarity=0.581  Sum_probs=32.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+++.+||...
T Consensus       147 GgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        147 GAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            8999999999999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.44  E-value=0.0029  Score=67.08  Aligned_cols=34  Identities=29%  Similarity=0.533  Sum_probs=30.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|++ .+||.+..
T Consensus        11 GgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143        11 GGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            89999999999999999999999996 68887653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14727 putative mercuric reductase; Provisional

Probab=96.44  E-value=0.0024  Score=66.47  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++++++++|++|..++ +.+ .+..++.++.+|.||++++...
T Consensus       227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~~~-~v~~~~g~i~aD~VlvA~G~~p  283 (479)
T PRK14727        227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD-NGF-VLTTGHGELRAEKLLISTGRHA  283 (479)
T ss_pred             hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence            34677888899999999999999999998765 433 3443333689999999998765

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.37  E-value=0.012  Score=59.11  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      .++.++|.+.++++|++++.+++|.+|..++ +++++|. .++  ..++||+||+|++.|.
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~  322 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHRDIPLRADHFVLASGSFF  322 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCccceEECCEEEEccCCCc
Confidence            4889999999999999999999999999888 8888777 554  4799999999999983

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13748 putative mercuric reductase; Provisional

Probab=96.36  E-value=0.0027  Score=67.64  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..++.++.+|.||++++...
T Consensus       309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~~~i~~D~vi~a~G~~p  365 (561)
T PRK13748        309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGHGELRADKLLVATGRAP  365 (561)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecCCeEEeCEEEEccCCCc
Confidence            34677888999999999999999999998765 543 3443333799999999988654

>PRK06370 mercuric reductase; Validated

Probab=96.35  E-value=0.0033  Score=65.25  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-EEEE-e-CCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-SGVV-T-NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-~~v~-~-~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|.+|..++ +.+ +.+. . ++.++.+|.||++++...
T Consensus       212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p  271 (463)
T PRK06370        212 EDVAAAVREILEREGIDVRLNAECIRVERDG-DGIAVGLDCNGGAPEITGSHILVAVGRVP  271 (463)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence            3567788888999999999999999998765 432 2222 2 345799999999988654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.33  E-value=0.0031  Score=69.00  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++||+||++|++.||+|+|+|+.+..|+
T Consensus       390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl  420 (1028)
T PRK06567        390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLL  420 (1028)
T ss_pred             CcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence            8999999999999999999999999765433

>KOG0399|consensus

Probab=96.33  E-value=0.0032  Score=68.12  Aligned_cols=35  Identities=37%  Similarity=0.562  Sum_probs=33.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |+|.+||+||-.|-++||-|+|+||.+++||.+..
T Consensus      1792 gsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1792 GSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             ccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            89999999999999999999999999999999863

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.30  E-value=0.0036  Score=62.68  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=29.2

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~   32 (523)
                      |||++||++|+.|+++  |++|+|+|+.+..||.
T Consensus         6 GaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         6 GGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            8999999999999987  9999999998877653

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PTZ00058 glutathione reductase; Provisional

Probab=96.27  E-value=0.0036  Score=65.94  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC-CeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN-GLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..++++++. +. .+ ++++.+|.||++++...
T Consensus       278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~P  336 (561)
T PTZ00058        278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSP  336 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCC
Confidence            467788889999999999999999999865423333 33 33 45799999999988553

>KOG2665|consensus

Probab=96.26  E-value=0.039  Score=51.87  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC---CeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDK---RASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~---~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++.+...+.+..+..|+++.+|-+|..|...+++   --+.|. ..+++++...||.+++...
T Consensus       195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            4678888999999999999999999999876632   122344 5577889999888877553

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.24  E-value=0.0039  Score=64.82  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC--C--eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN--G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~--g--~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|++++.|++|..++ +.+ .+. .+  |  +++.+|.||++++...
T Consensus       223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p  284 (475)
T PRK06327        223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVP  284 (475)
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCcc
Confidence            35678888899999999999999999998765 444 344 43  3  4689999999987654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.24  E-value=0.0043  Score=64.52  Aligned_cols=35  Identities=40%  Similarity=0.574  Sum_probs=32.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+.+++||.+..
T Consensus       150 GaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~  184 (485)
T TIGR01317       150 GSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY  184 (485)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence            89999999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06126 hypothetical protein; Provisional

Probab=96.23  E-value=0.0039  Score=66.14  Aligned_cols=63  Identities=21%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++. |++|+++++|++|..++ ++++.+.   .+|+  ++++|.||.|.+.+...++.+.
T Consensus       127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg  195 (545)
T PRK06126        127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG  195 (545)
T ss_pred             HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence            4566777777665 79999999999999887 5554222   2353  6899999999999887777764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.22  E-value=0.0045  Score=65.83  Aligned_cols=34  Identities=35%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+.+.+||..+
T Consensus       144 GaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        144 GGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            8999999999999999999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.21  E-value=0.0042  Score=64.94  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|...+ +.+ .++ .+|+++.+|.||++++...
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence            3567888899999999999999999998765 433 455 6788899999999988654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.20  E-value=0.0036  Score=66.62  Aligned_cols=59  Identities=15%  Similarity=0.235  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      .|.+.|.+.+..  ..++++++|++|..++ ++++ |+ .+|+++++|.||.|-+.+...++.+
T Consensus       195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l  254 (668)
T PLN02927        195 TLQQILARAVGE--DVIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL  254 (668)
T ss_pred             HHHHHHHhhCCC--CEEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence            566666554321  2478899999999876 6554 66 7888899999999999887665554

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.19  E-value=0.0044  Score=62.39  Aligned_cols=31  Identities=32%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++|+.||+.||+.|++|+|+|+++..+-
T Consensus         7 GgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         7 GGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            8999999999999999999999999887653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.16  E-value=0.0048  Score=61.73  Aligned_cols=30  Identities=37%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||++|+.||+.||++|++|+|+|+.+.+.
T Consensus         9 GGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          9 GAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            899999999999999999999999987643

>PRK10262 thioredoxin reductase; Provisional

Probab=96.16  E-value=0.0047  Score=60.69  Aligned_cols=34  Identities=32%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+. ..||.+..
T Consensus        13 GgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262         13 GSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            89999999999999999999999965 57887654

>PLN02985 squalene monooxygenase

Probab=96.13  E-value=0.0043  Score=64.89  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+.+. |++++.+ .|+++..++ +.+.+|+   .+|+  ++.||.||.|-+.+..+++.+.
T Consensus       148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~  215 (514)
T PLN02985        148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN  215 (514)
T ss_pred             HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence            6777888888776 5888865 577776665 6666676   3564  3568999999998877777664

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.09  E-value=0.0042  Score=63.00  Aligned_cols=62  Identities=15%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+ .|++++.+++|++|..++ +++ .|+ .+|.++++|.||.|.+.+..+.+.+.
T Consensus       113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~  176 (395)
T PRK05732        113 DVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLLVAADGSHSALREALG  176 (395)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence            344566666655 479999999999998766 554 366 67778999999999998865555553

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.09  E-value=0.0054  Score=69.44  Aligned_cols=54  Identities=24%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e----CCeEEEcCEEEEcCChHH
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T----NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~----~g~~~~ad~vI~a~~~~~  287 (523)
                      +...+.+.++++|++|++++.|.+|..+  +++.+|+ .    +++++.+|.|+++.+...
T Consensus       353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P  411 (985)
T TIGR01372       353 VSPEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEADALAVSGGWTP  411 (985)
T ss_pred             hhHHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence            4456778888999999999999999754  4455565 3    456789999999987543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11445 putative oxidoreductase; Provisional

Probab=96.04  E-value=0.0052  Score=61.23  Aligned_cols=57  Identities=14%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             HHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .|.+. .+.|++++.++.|++|..++ +.+ .|+  .+|+  +++||.||.|.+.....++.+.
T Consensus       104 ~L~~~-~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~  164 (351)
T PRK11445        104 WLKSL-IPASVEVYHNSLCRKIWRED-DGY-HVIFRADGWEQHITARYLVGADGANSMVRRHLY  164 (351)
T ss_pred             HHHHH-HhcCCEEEcCCEEEEEEEcC-CEE-EEEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence            34443 35689999999999998876 443 344  4564  6899999999998766555553

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.03  E-value=0.0048  Score=63.49  Aligned_cols=65  Identities=8%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCC---cEEEeCceeeEEEEC-----CCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASG---AQLFTSQTVTEITLD-----SDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G---~~i~~~~~V~~I~~~-----~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+-+.|.+.+.+.+   ++++++++|++|..+     +++..+.|+ .+|++++||.||-|-+.+...++.+.
T Consensus       117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g  190 (437)
T TIGR01989       117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN  190 (437)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence            356677788887765   899999999999753     112224566 78889999999999998877777764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PTZ00367 squalene epoxidase; Provisional

Probab=95.98  E-value=0.0054  Score=64.63  Aligned_cols=27  Identities=33%  Similarity=0.359  Sum_probs=26.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++|+++|..|+++|++|+|+||+.
T Consensus        40 GaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         40 GGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            899999999999999999999999975

>PLN02463 lycopene beta cyclase

Probab=95.95  E-value=0.006  Score=62.45  Aligned_cols=55  Identities=24%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+-+.|.+.+.+.|++++ .++|++|..++ ++ +.|+ .+|++++||.||.|.+...
T Consensus       114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~-~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SK-SLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-Ce-EEEEECCCCEEEcCEEEECcCCCc
Confidence            3566778888888899986 67999999876 54 3577 7888999999999998764

>PLN02507 glutathione reductase

Probab=95.91  E-value=0.0074  Score=63.03  Aligned_cols=56  Identities=23%  Similarity=0.275  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..++ +++ .+. .+|+++.+|.||++++...
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p  300 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAP  300 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCC
Confidence            4677888889999999999999999998765 443 355 6777899999999987553

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.008  Score=58.04  Aligned_cols=33  Identities=45%  Similarity=0.638  Sum_probs=27.0

Q ss_pred             CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+++++|.+ ++|+|+ ..+||...
T Consensus        10 G~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~   43 (305)
T COG0492          10 GGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLT   43 (305)
T ss_pred             CCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccc
Confidence            8999999999999999999 666665 55776554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.89  E-value=0.0088  Score=59.60  Aligned_cols=34  Identities=38%  Similarity=0.551  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||++|..|++.|++|+|+|+.+.+||...
T Consensus        25 G~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         25 GAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            8999999999999999999999999999999764

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.83  E-value=0.04  Score=54.75  Aligned_cols=63  Identities=16%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             Cceeec-CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CCeEEEcCEEEEcCChHH
Q psy893          220 GAWAYP-EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       220 g~~~~~-~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g~~~~ad~vI~a~~~~~  287 (523)
                      |.. || ..-...++++|...+++.|++|+++++|++|  ++ ++ ..+. . ++..+.||+||+|++-..
T Consensus        76 grv-fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        76 GRV-FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CEE-CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence            444 77 4567899999999999999999999999999  33 33 4566 3 335799999999998654

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK13984 putative oxidoreductase; Provisional

Probab=95.75  E-value=0.0097  Score=63.95  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |+|.+||+||..|+++|++|+|+|+.+.+||...
T Consensus       290 GaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        290 GSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            8999999999999999999999999999999764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.68  E-value=0.0099  Score=61.78  Aligned_cols=57  Identities=16%  Similarity=0.310  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..++ +....|+ .+|+++.+|.||++++...
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~P  288 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESGKTLDVDVVMMAIGRVP  288 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence            5778899999999999999999999998765 3334456 6777899999999988553

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.66  E-value=0.01  Score=61.49  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+|  .++.+|.||++++...
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~~g~~~~i~~D~vivA~G~~p  268 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEYEGSIQEVNAEFVLVSVGRKP  268 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEECCceEEEEeCEEEEecCCcc
Confidence            4678888899999999999999999998654 322 233444  3689999999988654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.64  E-value=0.011  Score=60.16  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..+.+.+.+.+++.|++++++++|++++..+ +. +.++ .+|+  ++++|.|++|++-.-
T Consensus       213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~-~~-v~v~~~~g~~~~~~ad~vLvAiGR~P  272 (454)
T COG1249         213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKD-DG-VLVTLEDGEGGTIEADAVLVAIGRKP  272 (454)
T ss_pred             CHHHHHHHHHHHHhCCeEEEccceEEEEEecC-Ce-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence            45788999999999889999999999999876 44 3455 6665  788999999998654

>PLN02546 glutathione reductase

Probab=95.61  E-value=0.011  Score=62.41  Aligned_cols=57  Identities=16%  Similarity=0.118  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|...+ +....+. .+++...+|.||++++...
T Consensus       293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECCeEEEecCEEEEeecccc
Confidence            4566778888999999999999999998754 3333355 4454445899999988654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=95.60  E-value=0.011  Score=62.10  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+...|.+.+++. |+++ +...|++|..++ +++.+|. .+|..+.|+.||.|++.+.
T Consensus       101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~-grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN-GRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC-CEEEEEEECCCCEEECCEEEEeeCcch
Confidence            4566677777766 6787 567799998887 8888898 7888999999999999653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.59  E-value=0.011  Score=62.08  Aligned_cols=32  Identities=28%  Similarity=0.587  Sum_probs=28.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+|++.|++|+|+|.  .+||.+.
T Consensus       218 GgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        218 GGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            8999999999999999999999986  3788653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.54  E-value=0.019  Score=43.39  Aligned_cols=30  Identities=33%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||..|+-+|..|++.|.+|+|+|+++.+.
T Consensus         6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    6 GGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             SSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            899999999999999999999999999876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=95.46  E-value=0.013  Score=60.74  Aligned_cols=56  Identities=11%  Similarity=0.141  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..++ +++ .|. .+|+++.+|.||++++...
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~p  274 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVP  274 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCc
Confidence            4567788899999999999999999998765 444 355 6788899999999977654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=95.46  E-value=0.011  Score=59.37  Aligned_cols=55  Identities=22%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+-+.+.+.+. .++.+++++.|++|...+ +. +.|+ .+|++++|+.||-+.++..
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~~-~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG-DG-VLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEecC-ce-EEEEECCCCEEEeeEEEECCCccc
Confidence            456677778777 566789999999999887 43 3455 8888999999999988543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.41  E-value=0.014  Score=61.39  Aligned_cols=31  Identities=35%  Similarity=0.612  Sum_probs=28.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||..|++.|++|+|+|.  ++||.+
T Consensus       219 GgGpAGl~AA~~la~~G~~v~li~~--~~GG~~  249 (515)
T TIGR03140       219 GGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV  249 (515)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence            8999999999999999999999985  578864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.38  E-value=0.013  Score=64.52  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~   28 (523)
                      |||++||+||..|+++  |++|+|+||++.
T Consensus         7 GaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          7 GGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            8999999999999998  899999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.32  E-value=0.038  Score=50.12  Aligned_cols=34  Identities=44%  Similarity=0.560  Sum_probs=28.4

Q ss_pred             CCChhHHHHHHHHHHcCCc-EEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~   34 (523)
                      |||++||++|+.|.++|.+ |+|+|+++.+||...
T Consensus         4 GaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~   38 (203)
T PF13738_consen    4 GAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR   38 (203)
T ss_dssp             --SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred             CcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence            8999999999999999999 999999999999754

...

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.25  E-value=0.019  Score=52.03  Aligned_cols=28  Identities=36%  Similarity=0.487  Sum_probs=25.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||+||..|++.|++|+|+|+.+.
T Consensus         6 GgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    6 GGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             SSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             ecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            8999999999999999999999977553

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.15  E-value=0.019  Score=61.57  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC-CCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR-HVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~   34 (523)
                      |||.+|.+||..+++.|.+|+|+|+. +.+||.|-
T Consensus       123 G~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        123 GCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            89999999999999999999999974 46899885

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=95.08  E-value=0.018  Score=61.95  Aligned_cols=64  Identities=17%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCc--EEEeCceeeEEEECCCC-CeEEEE-e------CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGA--QLFTSQTVTEITLDSDK-RASGVV-T------NG--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~-~~~~v~-~------~g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+.+.|+  +++++++|++++.++++ ..+.|+ .      +|  ++++||.||-|=+.+...++.+.
T Consensus       142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg  217 (634)
T PRK08294        142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG  217 (634)
T ss_pred             HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence            456677788877764  78999999999876422 112344 3      35  57999999999999887888774

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=94.80  E-value=0.027  Score=58.67  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|++++.|.+|...+ +.+ .|+ .++   +++.+|.||++++...
T Consensus       220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~p  279 (484)
T TIGR01438       220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDA  279 (484)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCc
Confidence            4677888899999999999999999998765 443 355 444   4789999999988654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG1298|consensus

Probab=94.74  E-value=0.024  Score=54.76  Aligned_cols=27  Identities=41%  Similarity=0.425  Sum_probs=25.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++|-+.|+.|+|.|.+|+|+||.-
T Consensus        52 GAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   52 GAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            899999999999999999999999964

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=94.42  E-value=0.031  Score=55.42  Aligned_cols=53  Identities=25%  Similarity=0.385  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      .+.+.+.+.+++. +.+| ....|++|..++ +++++|+ .+|+.+.+|.||+|+++
T Consensus        96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~-~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN-GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEE-EES-EEEEEECT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHhcCCCeEE-EEcccceEEecC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence            5566677777774 5777 467899999998 9999999 88999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06996 hypothetical protein; Provisional

Probab=94.33  E-value=0.036  Score=56.30  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCCh
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTA  285 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~  285 (523)
                      ..+-+.|.+.+++.|++++++++|++|..++ ..+ .++ .++   ++++||.||-|-+.
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v-~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGV-TLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeE-EEEECCCCcceEEeeeEEEECCCC
Confidence            3677888999999999999999999998776 444 344 433   58999999998663

>KOG1335|consensus

Probab=93.98  E-value=0.052  Score=52.49  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+++.+.|.+.|.+++++++|..+..+++|.+ .|.    .++  +++++|.+.++++-.-
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP  314 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRP  314 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcc
Confidence            37888889999999999999999999999885554 343    233  3789999888887554

>PRK02106 choline dehydrogenase; Validated

Probab=93.91  E-value=0.049  Score=57.96  Aligned_cols=47  Identities=21%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             HCCcEEEeCceeeEEEECCCCCeEEEE-eC-Ce---EEEcCEEEEcCChHHHH
Q psy893          242 ASGAQLFTSQTVTEITLDSDKRASGVV-TN-GL---EIKAKYVLSNTTAKCTL  289 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~-g~---~~~ad~vI~a~~~~~~~  289 (523)
                      ..+.+|++++.|++|..++ +++++|+ .+ +.   .+.++.||+|++...+-
T Consensus       213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP  264 (560)
T PRK02106        213 RPNLTIVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINSP  264 (560)
T ss_pred             CCCcEEEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence            4469999999999999987 8899998 33 22   35789999999987653

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=93.65  E-value=0.24  Score=52.67  Aligned_cols=57  Identities=18%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..|...|.+.+++.|++|+.++.|+++..++ |+++||. .   +|+  .+.|+.||+|++-..
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  181 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYG  181 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence            4789999999999999999999999999876 8999987 2   454  578999999988754

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>KOG2852|consensus

Probab=93.55  E-value=0.024  Score=52.60  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e---C-CeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T---N-GLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~---~-g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      +.++..|++.+++.| |++.++. |.++..+. .++.+|. .   + .....++++|++++||.  .+|++.
T Consensus       147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~  214 (380)
T KOG2852|consen  147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSDEK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF  214 (380)
T ss_pred             HHHHHHHHHHHHhhcCeEEEEee-eEEeeccc-ccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence            467788888888886 8888774 77776554 6666665 2   2 34567789999999998  577764

>KOG0042|consensus

Probab=93.55  E-value=0.23  Score=50.43  Aligned_cols=57  Identities=28%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ++.-.++=.+..+|..+.-+.+|.++..++++++.|++ .   .|+  +++|+.||.|++|..
T Consensus       225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs  287 (680)
T KOG0042|consen  225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS  287 (680)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence            56666666666789999888999999988767777776 3   354  568899999988863

>KOG1336|consensus

Probab=93.53  E-value=0.18  Score=50.51  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.++++++|+++++++.+.+++.+.+|+++.|. .||.++.||.||+-++..-
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            367788999999999999999999999988778999898 9999999999999888765

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.27  E-value=0.3  Score=36.71  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG  271 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g  271 (523)
                      ...+.+.+.+.+++.|+++++++.|.+|..++ +++. |+ .||
T Consensus        39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~~~-V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DGVE-VTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TSEE-EEEETS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEEE-EEEecC
Confidence            45778888999999999999999999999988 5565 77 765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.99  E-value=0.34  Score=51.64  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..|...|.+.+.+.|++|+.++.++++..+++|+|+||. .   +|+  .+.|+.||+|++-..
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            3578899999998899999999999999986338999987 2   454  568999999988764

>KOG2960|consensus

Probab=92.70  E-value=0.024  Score=49.99  Aligned_cols=34  Identities=38%  Similarity=0.525  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   34 (523)
                      |+|-+||+|||..+++  ..+|+|+|+.-.|||.++
T Consensus        83 GAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   83 GAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             CCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            8999999999999976  579999999999999875

>PRK06116 glutathione reductase; Validated

Probab=92.58  E-value=0.42  Score=49.40  Aligned_cols=33  Identities=39%  Similarity=0.577  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus        11 G~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116         11 GGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            89999999999999999999999996 7899774

>KOG1800|consensus

Probab=92.54  E-value=0.14  Score=49.57  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   35 (523)
                      |+|++|+-||..|-++  +.+|.|+|+.+.|+|..+.
T Consensus        27 GsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   27 GSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             CCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            8999999999999885  6899999999999999865

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.39  E-value=0.11  Score=52.68  Aligned_cols=33  Identities=36%  Similarity=0.480  Sum_probs=31.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |+|..||.+|..|+++|++|+|+|+.+++||..
T Consensus       143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            899999999999999999999999999999875

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=92.39  E-value=0.12  Score=51.90  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|++|+++|+.|+++|++|+|+|+..
T Consensus         7 GgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         7 GGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            899999999999999999999999865

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=92.33  E-value=0.47  Score=47.24  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=22.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEE-ccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVL-ERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vl-E~~~~~   29 (523)
                      |||++|+.||+.+|+.|.+|+|+ ++.+.+
T Consensus         6 GgG~AG~eAA~aaAr~G~~V~Lit~~~d~i   35 (392)
T PF01134_consen    6 GGGHAGCEAALAAARMGAKVLLITHNTDTI   35 (392)
T ss_dssp             SSSHHHHHHHHHHHHTT--EEEEES-GGGT
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeeccccc
Confidence            89999999999999999999999 333333

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.13  E-value=0.13  Score=53.10  Aligned_cols=55  Identities=22%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++++++++|.+|..+  +++..+..++.++.+|.||++++..
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~~~i~~d~vi~a~G~~  245 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDKGEYEADVVIVATGVK  245 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCCCEEEcCEEEECcCCC
Confidence            467788889999999999999999999643  4455555445579999999998865

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=91.99  E-value=0.14  Score=48.70  Aligned_cols=56  Identities=14%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ++-+.|...+++.|+.+..+-+|......+ ++++.|. .+..  .++||.+|+|++...
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccccCCCChhHeeeeccccc
Confidence            677888888889999999999999999888 8888887 5544  457888888776543

>PRK07846 mycothione reductase; Reviewed

Probab=91.63  E-value=0.15  Score=52.71  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+. .+.|++++++++|++|..++ +++ .|. .+|+++.+|.||++++...
T Consensus       208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        208 DISERFTEL-ASKRWDVRLGRNVVGVSQDG-SGV-TLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             HHHHHHHHH-HhcCeEEEeCCEEEEEEEcC-CEE-EEEECCCcEeecCEEEEEECCcc
Confidence            455555543 35689999999999998765 443 355 6788899999999988654

>TIGR03452 mycothione_red mycothione reductase

Probab=91.15  E-value=0.18  Score=52.06  Aligned_cols=54  Identities=17%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+ +.|+++++++.|++|..++ +++ .|. .+|+++.+|.||++++...
T Consensus       211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       211 DISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             HHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCCEEEcCEEEEeeccCc
Confidence            4555555544 5689999999999998765 443 355 6777899999999988654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.13  E-value=0.77  Score=47.86  Aligned_cols=34  Identities=35%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccC--------CCCCccee
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERR--------HVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~--------~~~GG~~~   34 (523)
                      |||.+|.+||..+++. |.+|+|+|+.        +.+||.|-
T Consensus        10 G~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl   52 (486)
T TIGR01423        10 GAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV   52 (486)
T ss_pred             CCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence            8999999999999997 9999999984        57899885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=91.04  E-value=0.18  Score=47.99  Aligned_cols=30  Identities=37%  Similarity=0.453  Sum_probs=27.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||++|--|||.+|++|.+|.++|-++.-+
T Consensus        10 GaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206          10 GAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             cccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            899999999999999999999999987543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=90.59  E-value=0.9  Score=45.70  Aligned_cols=55  Identities=15%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|++++++++|++|..++ +. ..|+ .+|+++.+|.||++++...
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence            566778888999999999999999998765 43 3466 7888999999999987643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.51  E-value=0.9  Score=50.64  Aligned_cols=56  Identities=18%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.++++|++|++++.|++|..++++....|. .+|+++.+|.||++++..
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r  244 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR  244 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence            45567888899999999999999999865323445566 889899999999998854

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=90.51  E-value=0.19  Score=53.09  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE--eC-C---e-EEEcCEEEEcCChHHH
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV--TN-G---L-EIKAKYVLSNTTAKCT  288 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~--~~-g---~-~~~ad~vI~a~~~~~~  288 (523)
                      +-..++...+.+. +.+|++++.|++|..++ +++++|.  .+ +   + .+.++.||++++...+
T Consensus       203 sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S  267 (542)
T COG2303         203 SAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS  267 (542)
T ss_pred             echhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence            3344444444444 59999999999999999 8888887  32 3   2 2467889998887765

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=90.50  E-value=0.26  Score=50.73  Aligned_cols=52  Identities=8%  Similarity=0.081  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..   .   .|+ .+|+++.+|.||++++...
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence            45777888999999999999999999952   2   355 6777899999999988653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=90.49  E-value=0.27  Score=49.85  Aligned_cols=54  Identities=13%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|+++++++.|++|.. + +.+ .|+ .+|+++.+|.||++++...
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQSGETLQADVVIYGIGISA  241 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECCCCEEECCEEEECCCCCh
Confidence            4566788888899999999999999976 3 333 456 7888899999999988654

>KOG0405|consensus

Probab=90.30  E-value=0.28  Score=47.04  Aligned_cols=60  Identities=15%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             CCHHH-HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893          227 GGMGA-VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       227 gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~  286 (523)
                      .+... +.+.+.+.++..|++++.++.++++....++....++..|....+|.+++|++-.
T Consensus       226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~  286 (478)
T KOG0405|consen  226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK  286 (478)
T ss_pred             cchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence            34544 5567778999999999999999999887645443333666555699999998865

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=90.18  E-value=1.1  Score=46.48  Aligned_cols=34  Identities=38%  Similarity=0.631  Sum_probs=31.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++|++||..|++.|++|+|+|+ +.+||.|..
T Consensus         8 G~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         8 GGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            8999999999999999999999999 889998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=89.87  E-value=1.2  Score=45.95  Aligned_cols=33  Identities=33%  Similarity=0.533  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|++|+|+||. .+||.|-
T Consensus         9 G~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         9 GGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            89999999999999999999999995 5899775

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02507 glutathione reductase

Probab=89.78  E-value=1.1  Score=46.95  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEcc---------CCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLER---------RHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~   34 (523)
                      |||.+|++||.+|++.|.+|+|+|+         .+.+||.|-
T Consensus        32 G~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~   74 (499)
T PLN02507         32 GAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV   74 (499)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence            8999999999999999999999996         356888884

>PRK09126 hypothetical protein; Provisional

Probab=89.51  E-value=1.2  Score=44.87  Aligned_cols=29  Identities=41%  Similarity=0.559  Sum_probs=27.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|+||...+
T Consensus        10 GgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126         10 GAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            89999999999999999999999998865

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=89.49  E-value=1.3  Score=45.55  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.|  .+|+|+|+++..+
T Consensus         7 GgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          7 GGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             CCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            89999999999999875  5899999998764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=89.13  E-value=0.96  Score=46.31  Aligned_cols=51  Identities=25%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.++++|++++++++|++|..   +   .|. .+|+++.+|.||++++..
T Consensus       228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~g~~i~~d~vi~~~G~~  279 (424)
T PTZ00318        228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKDGEVIPTGLVVWSTGVG  279 (424)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECCCCEEEccEEEEccCCC
Confidence            46778889999999999999999999963   2   255 788899999999987743

>PRK08013 oxidoreductase; Provisional

Probab=89.08  E-value=1.3  Score=45.01  Aligned_cols=29  Identities=45%  Similarity=0.485  Sum_probs=27.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|+.|+++|++|+|+|+++.+
T Consensus        10 GaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013         10 GGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            89999999999999999999999998764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.06  E-value=0.36  Score=50.05  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=27.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |.|.+|++||..|+++|++|++.|++..+
T Consensus         7 G~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          7 GLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            89999999999999999999999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=89.02  E-value=1.4  Score=45.78  Aligned_cols=35  Identities=34%  Similarity=0.446  Sum_probs=32.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++|++||.+|++.|++|+|+|+++.+||.|..
T Consensus        12 GaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249         12 GSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            89999999999999999999999999889998753

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.01  E-value=1.4  Score=42.39  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++ +.|++|..++ +.+ .|+ .+++++.+|+||+|++...
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEeCCCCEEEeCEEEECCCCCc
Confidence            36778888889999999999 8999998865 433 466 6677899999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.00  E-value=1.5  Score=45.43  Aligned_cols=34  Identities=41%  Similarity=0.679  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++|++||..|++.|++|+|+|+.. +||.|..
T Consensus        11 GaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416         11 GAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            899999999999999999999999987 8997753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=88.82  E-value=1.5  Score=45.04  Aligned_cols=34  Identities=38%  Similarity=0.524  Sum_probs=31.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC-CCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV-LGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~   34 (523)
                      |||.+|++||..|++.|++|+|+||.+. +||.|-
T Consensus        10 G~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251         10 GFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            8999999999999999999999999864 699763

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.72  E-value=0.42  Score=41.35  Aligned_cols=27  Identities=37%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||..|.+.|..|+++|++|+++.++.
T Consensus         6 GaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    6 GAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             SSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            899999999999999999999999876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=88.68  E-value=1.5  Score=45.30  Aligned_cols=33  Identities=36%  Similarity=0.526  Sum_probs=31.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus         9 G~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         9 GAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            8999999999999999999999999 47999885

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.67  E-value=1.6  Score=44.13  Aligned_cols=27  Identities=37%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             CCChhHHHHHHHHHHc---CCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARA---GLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~---G~~V~vlE~~~   27 (523)
                      |||++||++|+.|+++   |++|+|+||..
T Consensus        10 GaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732         10 GGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            8999999999999998   99999999964

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.51  E-value=1.4  Score=44.44  Aligned_cols=29  Identities=41%  Similarity=0.497  Sum_probs=27.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|+.|+++|++|+|+|+++.+
T Consensus        14 GaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494         14 GGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            89999999999999999999999998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.32  E-value=1.9  Score=42.59  Aligned_cols=29  Identities=48%  Similarity=0.662  Sum_probs=25.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|+||++.+
T Consensus         8 GaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    8 GAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             --SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CCCHHHHHHHHHHHhcccccccchhcccc
Confidence            89999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=88.31  E-value=1.5  Score=48.76  Aligned_cols=54  Identities=15%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+.+.+.+.++++|++|++++.|++|..+  +++.+|+ .+|+++.+|.||++++..
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~  237 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIR  237 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCC
Confidence            44566788888999999999999999754  4566777 889899999999998854

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=88.09  E-value=1.5  Score=45.43  Aligned_cols=33  Identities=45%  Similarity=0.618  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|+.||..|++.|.+|+|+|+.. +||.|-
T Consensus         8 G~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~   40 (466)
T PRK07845          8 GGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV   40 (466)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence            899999999999999999999999875 799875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=87.97  E-value=2.2  Score=44.41  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||.+|++||.+|++.|++|+|+|+. .+||.|..
T Consensus        11 G~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976         11 GGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            89999999999999999999999996 78998853

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=87.50  E-value=0.54  Score=41.87  Aligned_cols=28  Identities=32%  Similarity=0.245  Sum_probs=22.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |.|..||.+|..||++|++|+.+|.++.
T Consensus         7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    7 GLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             --STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            7899999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=87.30  E-value=2.2  Score=43.24  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~   29 (523)
                      |||++|++||..|++.|+  +|+|+++.+..
T Consensus        10 GgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754         10 GGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            899999999999999987  79999998654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=87.13  E-value=2  Score=43.24  Aligned_cols=31  Identities=39%  Similarity=0.539  Sum_probs=28.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++|+++|+.|+++|++|+|+|+++..||
T Consensus         6 GaG~AGl~~A~~la~~g~~v~liE~~~~~~~   36 (388)
T TIGR01790         6 GGGPAGLAIALELARPGLRVQLIEPHPPIPG   36 (388)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence            8999999999999999999999999877665

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=86.99  E-value=1.7  Score=46.13  Aligned_cols=31  Identities=29%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC-CCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR-HVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG   31 (523)
                      |||++|+.||+.+|+.|.+|+|+|++ +.+|+
T Consensus        11 GGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192         11 GGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             CchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            89999999999999999999999998 46665

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=86.99  E-value=2.2  Score=43.77  Aligned_cols=35  Identities=40%  Similarity=0.606  Sum_probs=32.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||.+|.+||.++++.|.+|+|+|+...+||.|-.
T Consensus        11 G~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249          11 GAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            89999999999999999999999999889999854

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.97  E-value=2.8  Score=43.50  Aligned_cols=33  Identities=39%  Similarity=0.617  Sum_probs=30.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||.+|++.|++|+|+|++ .+||.|.
T Consensus        11 G~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~   43 (466)
T PRK07818         11 GAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL   43 (466)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            89999999999999999999999985 6788775

>PTZ00058 glutathione reductase; Provisional

Probab=86.90  E-value=2.9  Score=44.35  Aligned_cols=33  Identities=36%  Similarity=0.571  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..+++.|.+|+|+|++ .+||.|-
T Consensus        55 G~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         55 GGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             CcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            89999999999999999999999996 6899884

>PRK14694 putative mercuric reductase; Provisional

Probab=86.85  E-value=2.4  Score=44.11  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|++|+|+|+. .+||.|.
T Consensus        13 GaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694         13 GSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            89999999999999999999999986 6899875

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.83  E-value=1.9  Score=43.52  Aligned_cols=27  Identities=37%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++||++|..|+++|++|+|+|+.+
T Consensus        10 GgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849         10 GGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            899999999999999999999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=86.80  E-value=2.1  Score=45.00  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++++++++|.+|..++ +. ..|. .+|+.+.+|+||+|++...
T Consensus       266 ~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       266 GSQLAANLEEHIKQYPIDLMENQRAKKIETED-GL-IVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence            45688899999999999999999999998765 43 3455 6777899999999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06370 mercuric reductase; Validated

Probab=86.79  E-value=2.4  Score=44.01  Aligned_cols=33  Identities=45%  Similarity=0.629  Sum_probs=29.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||.+|++.|++|+|+|+. .+||.|-
T Consensus        12 G~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370         12 GAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            89999999999999999999999986 5677664

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=86.72  E-value=0.53  Score=48.23  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||.+||.+|..|.+.+++|+|+|++++
T Consensus        17 GgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318         17 GTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            8999999999999877899999998775

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=86.72  E-value=2.2  Score=43.92  Aligned_cols=35  Identities=34%  Similarity=0.572  Sum_probs=31.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC-CCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH-VLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~s   35 (523)
                      |||.+|++||.+|+++|++|+|+|+.+ .+||.|..
T Consensus        10 GgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010         10 GFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            899999999999999999999999976 47998753

>PLN02785 Protein HOTHEAD

Probab=86.47  E-value=0.62  Score=49.66  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=38.4

Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCC---CCeEEEE-e--CCeEEE-------cCEEEEcCChHHH
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSD---KRASGVV-T--NGLEIK-------AKYVLSNTTAKCT  288 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~-~--~g~~~~-------ad~vI~a~~~~~~  288 (523)
                      ..+.......+.+|++++.|++|..+++   ++++||+ .  +|.+..       ++.||++++...+
T Consensus       224 a~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~s  291 (587)
T PLN02785        224 AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGS  291 (587)
T ss_pred             HHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCC
Confidence            3344445556799999999999999752   2789998 3  454322       3579998887654

>PLN02463 lycopene beta cyclase

Probab=86.45  E-value=2.3  Score=43.78  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=25.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++||++|+.|+++|++|+|+|+++
T Consensus        35 GaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         35 GGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            899999999999999999999999865

>PRK05868 hypothetical protein; Validated

Probab=86.33  E-value=2.2  Score=42.77  Aligned_cols=29  Identities=38%  Similarity=0.502  Sum_probs=27.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|+||++.+
T Consensus         8 GgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          8 GASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            89999999999999999999999998764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=86.28  E-value=2.5  Score=44.58  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++++++++|.+|...+ +. ..|. .+|+++.+|.||+|++...
T Consensus       265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAA-GL-IEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence            45788999999999999999999999998865 43 3466 6777899999999999753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=86.20  E-value=1.7  Score=44.29  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             CCChhHHHHHHHHHHcC-CcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAG-LSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~~G   30 (523)
                      |||++||++|..|+++| .+|+|+||++.++
T Consensus         7 GgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         7 GGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            89999999999999998 5999999987653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK10262 thioredoxin reductase; Provisional

Probab=86.03  E-value=2  Score=42.00  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC------eEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG------LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g------~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|+++++++.|++|..++ +++.+|+ .++      +++.+|.||++++...
T Consensus       186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             HHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence            466778888889999999999999998665 5565665 322      3689999999987654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.01  E-value=0.71  Score=48.18  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=26.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|.+|+++|..|+++|++|+++|+++.
T Consensus        23 G~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         23 GLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            8999999999999999999999998763

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=85.78  E-value=2.3  Score=43.56  Aligned_cols=53  Identities=23%  Similarity=0.223  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..+  +.+  +. .+|+++.+|.||++++..
T Consensus       179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~  232 (427)
T TIGR03385       179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIK  232 (427)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCcc
Confidence            356777888899999999999999999754  333  34 678889999999998865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14727 putative mercuric reductase; Provisional

Probab=85.50  E-value=2.6  Score=43.88  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=32.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus        23 G~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~   56 (479)
T PRK14727         23 GSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV   56 (479)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence            8999999999999999999999999888999985

>PRK06126 hypothetical protein; Provisional

Probab=85.50  E-value=3.4  Score=43.92  Aligned_cols=28  Identities=32%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||++|..|+++|++|+|+||++.
T Consensus        14 GaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126         14 GGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            8999999999999999999999999863

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.01  E-value=3.3  Score=41.57  Aligned_cols=28  Identities=25%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||++|..|+++|++|+|+|+.+.
T Consensus         8 GgG~~Gl~~A~~L~~~G~~v~l~E~~~~   35 (374)
T PRK06617          8 GCGLSGMLTALSFAQKGIKTTIFESKSV   35 (374)
T ss_pred             CCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence            8999999999999999999999999753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=84.77  E-value=1  Score=39.96  Aligned_cols=28  Identities=39%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|..|..-|..++.+|++|+++|.++.
T Consensus         6 GaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    6 GAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             S-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             cCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            8999999999999999999999999664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=84.58  E-value=3.6  Score=42.56  Aligned_cols=33  Identities=30%  Similarity=0.557  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|.+|+|+|++. +||.|-
T Consensus         7 G~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~   39 (458)
T PRK06912          7 GGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCL   39 (458)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCC
Confidence            899999999999999999999999975 677664

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=84.44  E-value=2.4  Score=42.37  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|.  + +   .|. .+|+++.+|.||++++...
T Consensus       191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCCCCEEecCEEEEccCCCh
Confidence            3566778888999999999999999885  2 3   355 6788999999999988543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1346|consensus

Probab=84.37  E-value=1.1  Score=44.22  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      |.+.-.+.+++.|++|+-|..|+++.... +.+ .+. .||.+++.|.||++++-.-. ..|...
T Consensus       395 ls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lkL~dG~~l~tD~vVvavG~ePN-~ela~~  456 (659)
T KOG1346|consen  395 LSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLKLSDGSELRTDLVVVAVGEEPN-SELAEA  456 (659)
T ss_pred             HHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEEecCCCeeeeeeEEEEecCCCc-hhhccc
Confidence            55666678888999999999999999876 544 355 89999999999999876542 355543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=84.26  E-value=4.1  Score=42.45  Aligned_cols=34  Identities=41%  Similarity=0.628  Sum_probs=30.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEcc------CCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLER------RHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~   34 (523)
                      |||.+|++||.+|++.|.+|+|+|+      ...+||.|.
T Consensus        11 G~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327         11 GAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence            8999999999999999999999998      367888774

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=84.23  E-value=0.72  Score=46.64  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCC-CeEEEE--eC-C--eEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDK-RASGVV--TN-G--LEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~-~~~~v~--~~-g--~~~~ad~vI~a~~~~  286 (523)
                      ..+...|.+.+++ .+++|+.++.+.+|..++ + .+.||.  .. +  .++.|+.||+|++-.
T Consensus       133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~  195 (518)
T COG0029         133 KEIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGL  195 (518)
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence            3678889988877 589999999999999988 6 444777  23 2  467899999987753

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=83.95  E-value=3.8  Score=42.15  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHH----cCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLAR----AGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~----~G~~V~vlE~~~~   28 (523)
                      |||++||++|+.|++    +|++|+|+|+++.
T Consensus         7 GaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         7 GGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            899999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07236 hypothetical protein; Provisional

Probab=83.61  E-value=3.5  Score=41.55  Aligned_cols=28  Identities=39%  Similarity=0.525  Sum_probs=26.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||++|..|+++|++|+|+||++.
T Consensus        13 GaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236         13 GGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            8999999999999999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=83.60  E-value=3.7  Score=43.79  Aligned_cols=33  Identities=27%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|.+|+|+|++ .+||.|-
T Consensus       105 G~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748        105 GSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            89999999999999999999999997 7899875

>PTZ00052 thioredoxin reductase; Provisional

Probab=83.55  E-value=4  Score=42.80  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC--------CCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH--------VLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~   34 (523)
                      |||.+|++||.+|+++|++|+|+|+..        .+||.|-
T Consensus        12 G~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~   53 (499)
T PTZ00052         12 GGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV   53 (499)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence            899999999999999999999999732        4888874

>PRK06753 hypothetical protein; Provisional

Probab=83.53  E-value=3.4  Score=41.34  Aligned_cols=29  Identities=38%  Similarity=0.552  Sum_probs=27.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|+||++.+
T Consensus         7 GgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          7 GAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            89999999999999999999999998865

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=83.18  E-value=3.9  Score=42.67  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC--------CCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH--------VLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~   34 (523)
                      |||.+|+.||..+++.|.+|+|+|+..        .+||.|-
T Consensus         9 G~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         9 GGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            899999999999999999999999742        4677663

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=83.15  E-value=0.98  Score=45.16  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             CCChhHHHHHHHHHHc---CCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARA---GLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~---G~~V~vlE~~~~   28 (523)
                      |||++|+.+|..|+++   +++|+|+|+++.
T Consensus         6 GgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         6 GGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            8999999999999754   689999998875

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=83.09  E-value=3.1  Score=42.78  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++|++||..|++.  +++|+|+|+++.++
T Consensus         8 GgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          8 GAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             CCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            8999999999999986  68999999988654

>PRK06475 salicylate hydroxylase; Provisional

Probab=83.04  E-value=5.8  Score=40.22  Aligned_cols=29  Identities=38%  Similarity=0.532  Sum_probs=27.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+|+||.+.+
T Consensus         9 GgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          9 GAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            89999999999999999999999998754

>TIGR02053 MerA mercuric reductase

Probab=82.90  E-value=4.7  Score=41.78  Aligned_cols=33  Identities=39%  Similarity=0.547  Sum_probs=30.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||.+|++.|++|+|+|+.. +||.|-
T Consensus         7 GaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         7 GSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            899999999999999999999999976 777763

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02546 glutathione reductase

Probab=82.54  E-value=5.1  Score=42.53  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC---------CCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR---------HVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~---------~~~GG~~~   34 (523)
                      |||.+|+.||..|++.|.+|+|+|+.         ..+||.|-
T Consensus        86 G~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~  128 (558)
T PLN02546         86 GAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV  128 (558)
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence            89999999999999999999999962         45788774

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=81.82  E-value=1.4  Score=46.87  Aligned_cols=51  Identities=24%  Similarity=0.365  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..|.+.+++.|.++++++.+++|.. . +++.+|+ .||..+.||.||.+++..
T Consensus       191 ~lL~~~le~~Gi~~~l~~~t~ei~g-~-~~~~~vr~~DG~~i~ad~VV~a~GIr  242 (793)
T COG1251         191 RLLRRKLEDLGIKVLLEKNTEEIVG-E-DKVEGVRFADGTEIPADLVVMAVGIR  242 (793)
T ss_pred             HHHHHHHHhhcceeecccchhhhhc-C-cceeeEeecCCCcccceeEEEecccc
Confidence            4577888899999999999999987 3 6788999 999999999999998854

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=81.57  E-value=1.7  Score=37.17  Aligned_cols=27  Identities=41%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|..|+..|++|+++|++|.++-+..
T Consensus         5 G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    5 GAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             STSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            899999999999999999999999855

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02661 Putative thiazole synthesis

Probab=81.25  E-value=8.1  Score=38.07  Aligned_cols=58  Identities=19%  Similarity=0.299  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----eEEEcCEEEEcCChH
Q psy893          228 GMGAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----LEIKAKYVLSNTTAK  286 (523)
Q Consensus       228 G~~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----~~~~ad~vI~a~~~~  286 (523)
                      ....+...|.+.+.+ .|++++.++.|.++..++ +++.||. .         .+     ..+.|+.||+|++..
T Consensus       170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~  243 (357)
T PLN02661        170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD  243 (357)
T ss_pred             chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence            334566777775554 689999999999999987 8888876 2         11     257999999999843

>KOG4716|consensus

Probab=80.94  E-value=2.1  Score=41.13  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---e-CCe--EEEcCEEEEcCChHHHHHhh
Q psy893          226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---T-NGL--EIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~-~g~--~~~ad~vI~a~~~~~~~~~l  292 (523)
                      +|=-+.+++.+.+.++++|+++...+-+.+|+..++++. .|.   . .++  +-.+|.|+.|++-.....+|
T Consensus       234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l  305 (503)
T KOG4716|consen  234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL  305 (503)
T ss_pred             ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhc
Confidence            333467889999999999999999988888887664553 343   2 222  33678999999877654444

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=80.88  E-value=5.5  Score=41.18  Aligned_cols=56  Identities=14%  Similarity=0.013  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCcE--EEeCceeeEEEECCCCCeEEEE-eC-C-e--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQ--LFTSQTVTEITLDSDKRASGVV-TN-G-L--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~~~~~v~-~~-g-~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+-|.+.++..|.+  |+++++|++|...+ +++ .|+ .+ + .  +..+|+||+|++...
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~~~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNSGGFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeE-EEEEEcCCCceEEEEcCEEEEeccCCC
Confidence            56788888888888877  99999999999876 543 455 32 2 2  457999999998643

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=80.87  E-value=6.8  Score=40.65  Aligned_cols=34  Identities=35%  Similarity=0.550  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||.+|+++|++|+|+|+++.+||.|-
T Consensus        10 G~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115         10 GGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            8999999999999999999999998888999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=80.81  E-value=5.4  Score=41.17  Aligned_cols=51  Identities=18%  Similarity=0.175  Sum_probs=37.7

Q ss_pred             HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----------eEEEcCEEEEcCChH
Q psy893          236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----------LEIKAKYVLSNTTAK  286 (523)
Q Consensus       236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----------~~~~ad~vI~a~~~~  286 (523)
                      ..+.+++.|+++++++.+.+|..++++++++|+ .         +|           .++.+|.||++++..
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~  386 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG  386 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence            345677889999999999999865436676665 3         23           258899999998753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG4405|consensus

Probab=80.75  E-value=7.7  Score=38.42  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeE--EEE-eCCeEEEcCEEEEc
Q psy893          222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRAS--GVV-TNGLEIKAKYVLSN  282 (523)
Q Consensus       222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~--~v~-~~g~~~~ad~vI~a  282 (523)
                      +-||--|.+.|++++-+.+.-.|+-..++.+|+.|..+. +...  .+. ..|+.+.++++|++
T Consensus       278 fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk-~s~~~~~~l~s~g~ri~~k~~v~s  340 (547)
T KOG4405|consen  278 FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDK-ESLDCKAILDSFGQRINAKNFVVS  340 (547)
T ss_pred             ceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecc-cccchhhhHhhhcchhcceeeeec
Confidence            347888999999999999999999999999999999987 4332  122 56777777776654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.65  E-value=1.5  Score=42.80  Aligned_cols=28  Identities=32%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|..|.+.|..|+++|++|+++++++.
T Consensus         9 G~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          9 GAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             CccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            8999999999999999999999998753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=80.61  E-value=1.5  Score=43.27  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=25.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|..||++|..||+.||+|+.+|...
T Consensus         7 GtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           7 GTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            899999999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
4dgk_A	501	Crystal Structure Of Phytoene Desaturase Crti From		5e-14

>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea Ananatis Length = 501

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 118/531 (22%), Positives = 199/531 (37%), Gaps = 83/531 (15%)
Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL  A  L  AG+ V +LE+R   GG A   E   GF F           P +  D
Sbjct: 9   AGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED-QGFTFDAG--------PTVITD 59
Query: 62  LELKKHGLKLLTRDPRSYTPLSPDK------WTNKAKSLTLGLDPQKNYEQIARFSVKDA 115
               +    L  +  + Y  L P        W +  K      D  +   QI +F+ +D 
Sbjct: 60  PSAIEELFALAGKQLKEYVELLPVTPFYRLCWES-GKVFNYDNDQTRLEAQIQQFNPRDV 118
Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSA----FS 171
           + + ++          LD    +    +  L      + R  ++    L    A    +S
Sbjct: 119 EGYRQF----------LDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYS 168
Query: 172 ILNDWFESEPLKATL-LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
            +  + E E L+        L+G   +P + S+ Y L+H +    E   G W +P GG G
Sbjct: 169 KVASYIEDEHLRQAFSFHSLLVGG--NPFATSSIYTLIHAL----EREWGVW-FPRGGTG 221
Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLL 290
           A+ Q + +  Q  G ++  +  V+ +    +K  +  + +G     + V SN     T  
Sbjct: 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYR 281
Query: 291 DLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSI--H 348
           DL+ +     + +  +Q+   ++ +  +   L                   HHH  +  H
Sbjct: 282 DLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLN------------------HHHDQLAHH 323
Query: 349 LNC------EDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFT 402
             C      E + ++F+       G+     +  +  P   D++L+P G   C  +    
Sbjct: 324 TVCFGPRYRELIDEIFN-----HDGLAEDFSLY-LHAPCVTDSSLAPEG---CGSYYVLA 374
Query: 403 PYKLAG--DRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGG 459
           P    G  + DWT E        +F+ +EQ Y PG    +V + + TP D   +     G
Sbjct: 375 PVPHLGTANLDWTVEGP-KLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHG 433
Query: 460 NIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG 510
           + F     L Q  + RP       +    I +L L G+G HPG G+ G  G
Sbjct: 434 SAFSVEPVLTQSAWFRP------HNRDKTITNLYLVGAGTHPGAGIPGVIG 478

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	8e-54
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-38
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	2e-18
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	3e-18
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	5e-13
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	1e-09
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	9e-09
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-08
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	5e-08
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-07
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	3e-07
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	5e-07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	5e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	5e-07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	7e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	3e-05
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	5e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	9e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	3e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	3e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	4e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	5e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-04

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score =  186 bits (475), Expect = 8e-54
 Identities = 86/525 (16%), Positives = 161/525 (30%), Gaps = 113/525 (21%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
           AG  GL+SAA L++AG  V V ER  + GG         GFQ S  A ++L    P+   
Sbjct: 8   AGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHML----PNGPG 62

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
                   L    ++  +   +                +       + + +    + F+ 
Sbjct: 63  GP------LACFLKEVEASVNIVR-------------SEMTTVRVPLKKGNPDYVKGFKD 103

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
                 +  +LL     +       LL+ +    R     + +         +      E
Sbjct: 104 I--SFNDFPSLLSYKDRMKIA----LLIVSTRKNRPSGSSLQAW--------IKSQVSDE 149

Query: 181 PLKATL--LTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALAR 238
            L           +            + ++ ++        G    PEGG   +  AL  
Sbjct: 150 WLIKFADSFCGWALSLKSDEVPVEEVFEIIENM----YRFGGTG-IPEGGCKGIIDALET 204

Query: 239 SAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNL 298
              A+G ++ T Q V++I ++ + +A+G++ +     A  V+SN     T + L  +   
Sbjct: 205 VISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHAATAV-LCSEALS 262

Query: 299 DERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVF 358
            E      + +    P   I + L        +P          H   + L         
Sbjct: 263 KEADAAYFKMVGTLQPSAGIKICL-----AADEP-------LVGHT-GVLLT-------- 301

Query: 359 DAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKA 418
                     P TR +  +   +  D  L+PPG H+ +      P           ++  
Sbjct: 302 ----------PYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP--------ENVKNLE 343

Query: 419 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLP 478
           +        +++  PG       YE+L               +   A          P  
Sbjct: 344 SEIEMGLEDLKEIFPGKR-----YEVLLIQSYH-----DEWPVNRAA------SGTDP-- 385

Query: 479 IQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYI--AAQMVNRLM 521
             G  +P      L + G GA   GG+    G       ++ +++
Sbjct: 386 --GNETP---FSGLYVVGDGAKGKGGI-EVEGVALGVMSVMEKVL 424

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score =  144 bits (366), Expect = 2e-38
 Identities = 84/513 (16%), Positives = 145/513 (28%), Gaps = 133/513 (25%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
           AG  GL++ A+LAR G  + VLE+  ++GG         GFQ S  A +++    PH   
Sbjct: 8   AGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMI----PHGED 62

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
                   L  L R   +   +                +P            K    +E 
Sbjct: 63  GP------LAHLLRILGAKVEIVN-------------SNP------------KGKILWEG 91

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
              H  E    L      +  +    L      R  ++          A   + +     
Sbjct: 92  KIFHYRESWKFL------SVKEKAKALKLLAEIRMNKLP----KEEIPADEWIKEKIGEN 141

Query: 181 PLKATLLTD--GLIGAMVSPHSPSTS-YVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALA 237
               ++L    G   ++      +      +      A    G      GG  AV   L 
Sbjct: 142 EFLLSVLESFAGWADSVSLSDLTALELAKEIRA----ALRWGGPG-LIRGGCKAVIDELE 196

Query: 238 RSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGN 297
           R    +  ++ T + V EI ++  K       +  E      +SN   + T + LI +  
Sbjct: 197 RIIMENKGKILTRKEVVEINIEEKK---VYTRDNEEYSFDVAISNVGVRET-VKLIGRDY 252

Query: 298 LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQV 357
            D    + V SI+  S   K N+A+   P             +  +   I          
Sbjct: 253 FDRDYLKQVDSIEP-SEGIKFNLAVPGEP-------------RIGNT--IVFTPGL---- 292

Query: 358 FDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDK 417
                           +     PS+LD +L+  G+ + +         +    +   E+ 
Sbjct: 293 ---------------MINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEE- 336

Query: 418 ANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPL 477
                     + +  P         E L                +     +     NR  
Sbjct: 337 ----------LLEIFP-------EGEPLLAQV------------YRDGNPV-----NRTR 362

Query: 478 PIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPG 510
                  P   +  +L+ G G  P GG+    G
Sbjct: 363 AGLHIEWP---LNEVLVVGDGYRPPGGI-EVDG 391

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 86.9 bits (214), Expect = 2e-18
 Identities = 52/386 (13%), Positives = 115/386 (29%), Gaps = 22/386 (5%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G    + +  L+  G  + VL+R    GG   +  +   +   +    +        + 
Sbjct: 28  TGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSK-YGENRH 86

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
             +      +L         L   + TN  +   L ++    Y+   +  +   +   K 
Sbjct: 87  WNVDLIPKFILVGGN-LVKILKKTRVTNYLE--WLVVEGSYVYQHQKKGFLTSEKFIHKV 143

Query: 122 DHHIEEI-TNLLDPLFDIAPHDFGNLLMY--NLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
                E   + L  L +   +   N   Y       +    D       +   I   +  
Sbjct: 144 PATDMEALVSPLLSLME--KNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNL 201

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVL----LHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
            +     L     +              L    L+     A G K  + YP  G+G + +
Sbjct: 202 CQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFG-KSPFIYPLYGLGGIPE 260

Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN-GLEIKAKYVLSNTTAKCTLLDLI 293
             +R    +G     ++ V +   D D +  G+ ++ G       V+ + +    L + I
Sbjct: 261 GFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKI 320

Query: 294 PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCED 353
            K     +  + +  +   +P+ + N           +    ++ +  +     H     
Sbjct: 321 KKIG---QVIRCICILS--NPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVT-- 373

Query: 354 MQQVFDAYQDATQGIPSTRPMIEMVL 379
           ++  + A   AT    +    IE  L
Sbjct: 374 LKGKYIAIVSATVETNNPIKEIEKPL 399

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 86.1 bits (212), Expect = 3e-18
 Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 69/313 (22%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE------------------------- 36
            G    + +  ++  G  V  ++R    GG + +                          
Sbjct: 14  TGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRD 73

Query: 37  ---EIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKW--TNKA 91
              ++IP F  +    +  LL   + + L+ K      + +  + Y   S +     +  
Sbjct: 74  WNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNL 133

Query: 92  KSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL 151
             +      +K    +A F   D + FE  D                         M ++
Sbjct: 134 MGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNT--------------------SMRDV 173

Query: 152 FTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHV 211
           + +    +DV      +      D +  +P   T+                   + L+  
Sbjct: 174 YRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETIN-----------------RIKLYSE 216

Query: 212 MGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG 271
                G K  + YP  G+G + Q  AR +   G     ++ V +I +++ K   GV + G
Sbjct: 217 SLARYG-KSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGK-VVGVKSEG 274

Query: 272 LEIKAKYVLSNTT 284
              + K ++ + +
Sbjct: 275 EVARCKQLICDPS 287

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 69.9 bits (170), Expect = 5e-13
 Identities = 48/359 (13%), Positives = 109/359 (30%), Gaps = 29/359 (8%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G    + +  L+  G  V  ++++   GG A +  +   ++  + + +    R   +  
Sbjct: 19  TGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGK 78

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
              +   + L+ +   +   L+          +   +    +++Q++   V       K 
Sbjct: 79  D--RDWNVDLIPKFLMANGELTNIL-------IHTDVTRYVDFKQVSGSYVFKQGKIYKV 129

Query: 122 DHHIEEITNLLDPLFDI-APHDFGNLLMYNLFTRRGEMKDV--YSLLTCSAFSILNDWFE 178
             +  E   +  PL  I         L +    +  ++       L   +   +   +  
Sbjct: 130 PANEIEA--ISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
               K  +     +                  L +    A   K  + YP  G+G + Q 
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQG 247

Query: 236 LARSAQASGAQLFTSQTVTEITLDSD-KRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP 294
            AR +   G        + E+    D  +  GV T     KA  V+++ T         P
Sbjct: 248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPT-------YFP 300

Query: 295 KG--NLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNC 351
           +   +  +R  +A+  ++   PV   + A              ++ +        H  C
Sbjct: 301 EKCKSTGQRVIRAICILN--HPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVC 357

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 53/333 (15%), Positives = 93/333 (27%), Gaps = 57/333 (17%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI--IPGFQFSR-ASYLLSLLRPHI 58
            G +GL +A  L  AG  V +LE    LGG A + E   +PG +     +YL     P +
Sbjct: 9   GGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRL 68

Query: 59  YKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
               EL ++G+   T     +T                        +Q       +A   
Sbjct: 69  AA--ELDRYGIP--TAAASEFTSFRHRLGPT-------------AVDQAFPIPGSEAVAV 111

Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
           E   + +    + +D    +   D  +L +                   + +    D   
Sbjct: 112 EAATYTLLRDAHRIDLEKGLENQDLEDLDI-----------------PLNEYVDKLDLPP 154

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGG---AEGVKGAWAYPEGGMGAVSQA 235
                       ++G        S  ++L             V         G   +  A
Sbjct: 155 VSRQFLLAWAWNMLGQ--PADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDA 212

Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVT-NGLEIKAKYVLSNTTAKCTLLDLI- 293
           ++        ++     VT I    D     V   +G   +A  V+            I 
Sbjct: 213 MS----QEIPEIRLQTVVTGIDQSGDVVN--VTVKDGHAFQAHSVIV--ATPMNTWRRIV 264

Query: 294 --PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
             P   L ER    ++         KI + ++ 
Sbjct: 265 FTPA--LPERRRSVIEEGHGGQ-GLKILIHVRG 294

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 51/361 (14%), Positives = 97/361 (26%), Gaps = 83/361 (22%)

Query: 6   GLVSAAYLARAGL-SVAVLERRHVLGGAAVTEEIIP-----GFQFSRASYLLSLLRPHIY 59
           GL +  YL +AG     +LER   +GG   +          G      SY        I 
Sbjct: 18  GLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSY------DTI- 70

Query: 60  KDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFE 119
                     +++ R                      G           R         E
Sbjct: 71  ---------QEIMDR---------------------TGDKVDGPK---LRREF----LHE 93

Query: 120 KYDHHIEEITNLLDPLFDIAPHDFGNLLM--YNLFTRRGEMKDVYSLLTCSAFSILNDWF 177
             + ++ E   +  P    A    G LL   Y  +   G    V+  L        +++ 
Sbjct: 94  DGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLP----FDEFL 149

Query: 178 ESEPLKAT--LLTDGLIGAMV-SPHSPSTSYVL----LHHVMGGAEGVKGAWAYPEGGMG 230
                +A   L  +           +   +YVL       +M  A+G          G  
Sbjct: 150 ALNGCEAARDLWINPFTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKG---DLWTWADGTQ 206

Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKCT 288
           A+ + L             +  +T IT +       V   T   + ++  ++        
Sbjct: 207 AMFEHLNA---TLEHPAERNVDITRITREDG----KVHIHTTDWDRESDVLV----LTVP 255

Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIH 348
           L   +   + D+   +    I +     +  V    +  +        + ++P   G + 
Sbjct: 256 LEKFLDYSDADDDEREYFSKIIH----QQYMVDACLVKEYPTISGYVPDNMRPERLGHVM 311

Query: 349 L 349
           +
Sbjct: 312 V 312

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 48/334 (14%), Positives = 105/334 (31%), Gaps = 44/334 (13%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G+ GL +   L  AG    +LE R  +GG + +   I G+ +      +   + H+++ 
Sbjct: 47  GGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWR- 104

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
            E+ ++ +      P        + +  +    T      +  +++ R ++    N +  
Sbjct: 105 -EITRYKMH-NALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGT 162

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
           +     +    D  +      +  +       +  +       L+ +  S L  +     
Sbjct: 163 NGR-TVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDE------LSLNERSSLEAFILLC- 214

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGA--EGVKGAWAY--PEGGMGAVSQALA 237
                       +  +  + S    L    M G   +G          + G  A ++   
Sbjct: 215 ------------SGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFW 262

Query: 238 RSAQASG-AQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLI 293
             A  +G         V  +  + D           +G E  AK V+   T    +L  I
Sbjct: 263 EEAAGTGRLGYVFGCPVRSVVNERD----AARVTARDGREFVAKRVVC--TIPLNVLSTI 316

Query: 294 ---PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
              P   L      A+Q+   +   TK++  + +
Sbjct: 317 QFSPA--LSTERISAMQAGHVSM-CTKVHAEVDN 347

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 61/324 (18%), Positives = 99/324 (30%), Gaps = 45/324 (13%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
            G +G+ +A  L  +GL+V VLE R  +GG   T             SY+    +  I +
Sbjct: 12  GGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILR 70

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
               K+ GL+       +           K+        P  N       +  D  NF +
Sbjct: 71  --LAKELGLET---YKVNEVERLIHHVKGKSYPFRGPFPPVWNP-----ITYLDHNNFWR 120

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
               +        P       ++ N+ M  L  +    +    L T      +N    +E
Sbjct: 121 TMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLAT----LFVNLCVTAE 176

Query: 181 PLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSA 240
             + + L                       ++    G  G      GG G VS+ +    
Sbjct: 177 THEVSALWFLWYVK---------QCGGTTRIISTTNG--GQERKFVGGSGQVSERIMDLL 225

Query: 241 QASGAQLFTSQTVTEITLDSDKRASGVV---TNGLEIKAKYVLSNTTAKCTLLDLI---P 294
              G ++   + V  I    +     V+    N    +AKYV+S      TL   I   P
Sbjct: 226 ---GDRVKLERPVIYIDQTRE----NVLVETLNHEMYEAKYVIS--AIPPTLGMKIHFNP 276

Query: 295 KGNLDERTTQAVQSIDYASPVTKI 318
              L     Q +  +   S V K 
Sbjct: 277 P--LPMMRNQMITRVPLGS-VIKC 297

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 53/327 (16%), Positives = 92/327 (28%), Gaps = 60/327 (18%)

Query: 6   GLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-----------IPGFQFSRASYLLSLL 54
           GL +A  L +AGLSVAV+E R  +GG   T+ I           +   Q           
Sbjct: 17  GLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQ----------- 65

Query: 55  RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKD 114
              +     L + GLK      R     S    +   ++   G     N           
Sbjct: 66  -TALIS--LLDELGLKTF---ERYREGESVYISSAGERTRYTGDSFPTNETTKKEM---- 115

Query: 115 AQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
            +  ++ D    +I    +P       D   +        + +  +    +       + 
Sbjct: 116 DRLIDEMDDLAAQI-GAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIG----LFIA 170

Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQ 234
               ++P               S                  +          GGM  VS 
Sbjct: 171 GGMLTKPAH-----------SFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSI 219

Query: 235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI- 293
            +A +    G  +F +  V  +   ++  A+ +    + ++A  V+        L   I 
Sbjct: 220 RMAEAL---GDDVFLNAPVRTVK-WNESGATVLADGDIRVEASRVIL--AVPPNLYSRIS 273

Query: 294 --PKGNLDERTTQAVQSIDYASPVTKI 318
             P   L  R  Q  Q       V K+
Sbjct: 274 YDPP--LPRRQHQMHQHQSLGL-VIKV 297

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 51/340 (15%), Positives = 100/340 (29%), Gaps = 64/340 (18%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTE-------------EIIPGFQFSRAS 48
           AG  GL +A  LA AG  V VLE     GG   T                +P        
Sbjct: 41  AGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVRE 100

Query: 49  YLLSLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIA 108
           Y+              +K  L+L             ++++ +  +    +   +      
Sbjct: 101 YI--------------RKFDLRL-------------NEFSQENDNAWYFIKNIRKKVGEV 133

Query: 109 RFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCS 168
           +      +   K     +    L +        +          T    + + Y   +  
Sbjct: 134 KKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKR-------TNCSYILNKYDTYSTK 186

Query: 169 AFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGG 228
            + I         +        +IG +++  S      +           +  +     G
Sbjct: 187 EYLIKEGDLSPGAV-------DMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDG 239

Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDK---RASGVVTNGLEIKAKYVLSNTTA 285
           M  +  A+ R       ++  +  V +I  +  K       +      + A YV+  TT+
Sbjct: 240 MDKLPTAMYRDI---QDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS 296

Query: 286 KCT-LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKS 324
           +   L+   P   L  +   A++S+ Y S  TKI +   +
Sbjct: 297 RAVRLIKFNPP--LLPKKAHALRSVHYRS-GTKIFLTCTT 333

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 54/332 (16%), Positives = 94/332 (28%), Gaps = 46/332 (13%)

Query: 6   GLVSAAYLARAGLSVAVLERRHVLGG-------AAVTEEIIPGFQFSRAS----YLLSLL 54
           GL SA  L +AG  V VLE R   GG        +   ++    Q    S    Y +   
Sbjct: 23  GLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGAT 82

Query: 55  R-PHIYKDLEL-KKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSV 112
           R P  +  L+  ++ G+++     + +   + + + N     +L           A    
Sbjct: 83  RIPQSHITLDYCRELGVEI-----QGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFG 137

Query: 113 KDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLL--MYNLFTRRGEMKDVYSLLTCSAF 170
             ++  +K      +   L   L           L    +L      +            
Sbjct: 138 YMSELLKK----ATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPG 193

Query: 171 SILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG 230
           + LN   E +P     +    IG                   G  +        P GGM 
Sbjct: 194 AGLNFGTEKKPFAMQEVIRSGIGRN------------FSFDFGYDQA--MMMFTPVGGMD 239

Query: 231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL--EIKAKYVLSNTTAKCT 288
            +  A           +     VT +   S+         G    I A Y +        
Sbjct: 240 RIYYAFQDRIGTD--NIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHL- 296

Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINV 320
           +  L    NL      A+++   +S   K+ +
Sbjct: 297 VGRLQN--NLPGDVLTALKAAKPSS-SGKLGI 325

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
             V  A   P  G       + A A  A+  GA+L     V    ++++    GV TN  
Sbjct: 132 SEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENN-EIKGVKTNKG 190

Query: 273 EIKAKYVLSNTTA 285
            IK   V+ N T 
Sbjct: 191 IIKTGIVV-NATN 202

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 213 GGAEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT 269
                V GA   P  G+     V+ A AR A   G  +  +  VT    D + + +GV T
Sbjct: 154 DIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGE-KVTGVKT 212

Query: 270 NGLEIKAKYVLSNTTA 285
               I A  V     A
Sbjct: 213 TRGTIHAGKVA-LAGA 227

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 53/356 (14%), Positives = 101/356 (28%), Gaps = 68/356 (19%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSL 53
           AG +GL +A  L   GL+V V E     GG   +     G  +             +  L
Sbjct: 21  AGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFL 79

Query: 54  L----------------RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLG 97
           +                + +I ++         LL  +P      +     +K + L   
Sbjct: 80  IDSLGLREKQQFPLSQNKRYIARN-----GTPVLLPSNPIDLIKSNFLSTGSKLQMLLEP 134

Query: 98  LDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE 157
           +  +         S +    F +     E +  L+DP                     G 
Sbjct: 135 ILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVA---------------GTCGG 179

Query: 158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEG 217
             D     + S      + +  E    +++     GA+ S  SP              + 
Sbjct: 180 DPD-----SLSMHHSFPELWNLEKRFGSVIL----GAIRSKLSPKNEKKQGPPKTSANKK 230

Query: 218 VKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR----------ASGV 267
            +       GGM  ++ A+ +       +L  +  V E++    +           AS  
Sbjct: 231 RQRGSFSFLGGMQTLTDAICK--DLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPH 288

Query: 268 VTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALK 323
                E     V+  T   C +  +      +      +  +DY  P++ +    K
Sbjct: 289 KRQSEEESFDAVIM-TAPLCDVKSMKIAKRGNPFLLNFIPEVDYV-PLSVVITTFK 342

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 215 AEGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNG 271
           +  + GA    +        V +A  ++A+  GA++F    V  +    D  A  + T  
Sbjct: 146 SGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVE--RDGEALFIKTPS 203

Query: 272 LEIKAKYVL 280
            ++ A +V+
Sbjct: 204 GDVWANHVV 212

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 59/331 (17%), Positives = 110/331 (33%), Gaps = 33/331 (9%)

Query: 6   GLVSAAYLARAGLS--VAVLERRHVLGGAAVTEEIIPGFQFSRA--SYLLSLLRPHIYKD 61
           GL ++ +L+RA     V ++E    LGG   +     G  F         +         
Sbjct: 14  GLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLL 73

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWT---NKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
           L + + GL       R   P + +++        +L  GL                  + 
Sbjct: 74  L-VSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGL--------RGLLRPSPPFSK 124

Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR---GEMKDVYS--LLTCSAFSIL 173
             +   + E+T       D   H F    +             + V++      S  S  
Sbjct: 125 PLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCF 184

Query: 174 NDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVS 233
              F++E    ++L   L+GA  +P   S            A   + +     GG+  + 
Sbjct: 185 PSLFQAEQTHRSILLGLLLGAGRTPQPDSALI-------RQALAERWSQWSLRGGLEMLP 237

Query: 234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI 293
           QAL     + G  +   Q V  ++L ++ R   V      ++A +V+S   A   L +L+
Sbjct: 238 QALETHLTSRGVSVLRGQPVCGLSLQAEGRWK-VSLRDSSLEADHVISAIPAS-VLSELL 295

Query: 294 PKGNLDERTTQAVQSIDYASPVTKINVALKS 324
           P         +A+ +I     V  +N+  + 
Sbjct: 296 P--AEAAPLARALSAITAV-SVAVVNLQYQG 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 53/382 (13%), Positives = 110/382 (28%), Gaps = 114/382 (29%)

Query: 19  SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKDLELKKHGLKLLTRDPRS 78
            ++     H+       +             + SLL     K L+ +   L      PR 
Sbjct: 280 FLSAATTTHI-----SLDHHSMTLT---PDEVKSLLL----KYLDCRPQDL------PRE 321

Query: 79  YTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDP---- 134
               +P + +  A+S+  GL    N++ +         N +K    IE   N+L+P    
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYR 372

Query: 135 -LFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIG 193
            +FD             +F         +  +     S++  WF+       ++ + L  
Sbjct: 373 KMFD----RLS------VF-----PPSAH--IPTILLSLI--WFDVIKSDVMVVVNKLHK 413

Query: 194 -AMVSPHSPSTSYVL----------------LHHVMGGAEGVKGAWAYPEGGMGAVSQA- 235
            ++V      ++  +                LH  +   +       +    +       
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQ 471

Query: 236 ---------LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK 286
                    L          LF       + LD            LE K ++  +   A 
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLF-----RMVFLD---------FRFLEQKIRHDSTAWNAS 517

Query: 287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVA----LKSIPNFLADPNPSENTVQPH 342
            ++L+ +       +         Y   +   +      + +I +FL  P   EN +   
Sbjct: 518 GSILNTL----QQLKF--------YKPYICDNDPKYERLVNAILDFL--PKIEENLICSK 563

Query: 343 HHGSIH--LNCEDMQQVFDAYQ 362
           +   +   L  ED     +A++
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 61/418 (14%), Positives = 120/418 (28%), Gaps = 128/418 (30%)

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNL--FTRRGEMKDVYSLLTCSAFSILNDWFE 178
           + HH++  T           + + ++L      F    + KDV  +      SIL+    
Sbjct: 3   HHHHMDFETGEHQ-------YQYKDILSVFEDAFVDNFDCKDVQDMPK----SILSK--- 48

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMG-GAEGVK---------------GAW 222
            E        D +I    S  + S +  L   ++    E V+                  
Sbjct: 49  EE-------IDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 223 AY----PEGGMGAVSQALARSAQASGAQLFTSQTVT------EIT--LDSDKRASGVVTN 270
                 P        +   R    +  Q+F    V+      ++   L   + A  V+ +
Sbjct: 99  KTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 271 GLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFL- 329
           G+    K  +    A    L    +  +D +    +  ++  +        L+ +   L 
Sbjct: 157 GVLGSGKTWV----ALDVCLSYKVQCKMDFK----IFWLNLKN-CNSPETVLEMLQKLLY 207

Query: 330 -ADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL---DN 385
             DPN +    +  H  +I L    +Q                R +      + L    N
Sbjct: 208 QIDPNWTS---RSDHSSNIKLRIHSIQAEL------------RRLLKSKPYENCLLVLLN 252

Query: 386 TLSPPGHHV------C-LLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD 438
             +            C +L T  T       R     D  + AT    S++ +    T D
Sbjct: 253 VQNA--KAWNAFNLSCKILLT--T-------RFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 439 IVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS-SPF--TLIPHLL 493
               E+ +              +      L+    +  LP +  + +P   ++I   +
Sbjct: 302 ----EVKS--------------LL--LKYLDCRPQD--LPREVLTTNPRRLSIIAESI 337

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 71/513 (13%), Positives = 136/513 (26%), Gaps = 191/513 (37%)

Query: 36  EEIIPGFQ--FSR---ASYLLSLLRPHIYKDLELKKHGLKLLTRDPRSY----------- 79
           ++I+  F+  F        +  + +  I    E+  H +        +            
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 80  --------TPLSPD-KW-------TNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYD- 122
                     L  + K+         +  S+       + Y +       D Q F KY+ 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-----MTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 123 HHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEM----KDVYSLLTCSAFSILND--- 175
             ++    L   L ++ P    N+L+       G +    K   +L  C ++ +      
Sbjct: 132 SRLQPYLKLRQALLELRPAK--NVLID------G-VLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 176 ---WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMG--GAEGVKGAWAYPEGGMG 230
              W          L    +    SP +       L + +          +       + 
Sbjct: 183 KIFW----------LN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IH 228

Query: 231 AVSQALARSAQASGAQLFTSQTVTE--ITLD--SDKRASGVVTNGLEIKAKYVLSNTTAK 286
           ++   L R        L  S+      + L    + +      N   +  K         
Sbjct: 229 SIQAELRR--------LLKSKPYENCLLVLLNVQNAK----AWNAFNLSCK--------- 267

Query: 287 CTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
             LL           TT+  Q  D+ S  T  +++L      L    P E         S
Sbjct: 268 -ILL-----------TTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVK-------S 305

Query: 347 IHLNCEDMQQVFDAYQDATQGIPSTRPMI-EMV--LPSSLDNTLSPPGHHVCLLFTQFTP 403
           + L   D +   D  ++     P    +I E +    ++ DN                  
Sbjct: 306 LLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDN------------------ 346

Query: 404 YKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEF-GLTGGNIF 462
           +K             +   +  ++I +             +L P +  K F  L+   +F
Sbjct: 347 WK-------------HVNCDKLTTIIESS---------LNVLEPAEYRKMFDRLS---VF 381

Query: 463 HGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLC 495
                              P S    IP +LL 
Sbjct: 382 -------------------PPS--AHIPTILLS 393

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
           E + G    P  G+       Q L +  +++G     S TVT I      R +GV T   
Sbjct: 134 ENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGG-RVTGVQTADG 192

Query: 273 EIKAKYVLS 281
            I A  V+S
Sbjct: 193 VIPADIVVS 201

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 54/401 (13%), Positives = 116/401 (28%), Gaps = 93/401 (23%)

Query: 6   GLVSAAYLARA------GLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLL 51
           GL +A Y+ +        L + ++E    +GG   T +   G+           R     
Sbjct: 17  GLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKKSAP 75

Query: 52  SLLR---------------PHIYKDLELKKHGLKLLTRDPRSYTPL-SPDKWTNKAKSLT 95
            L++                ++  +  L       +   P    P  S   ++   K   
Sbjct: 76  QLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGK-AR 134

Query: 96  LGLDPQKNYEQIARFSVKDAQNFEKY--DHHIEEIT-NLLDPLFDIAPHDFGNLLMYNLF 152
             +D       +     KD Q+  ++      +E+  NL++PL            +Y   
Sbjct: 135 AAMDF-----ILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLS---------GIYA-- 178

Query: 153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM 212
                  D+  L   S F       +            LI  M       +   L     
Sbjct: 179 ------GDIDKLSLMSTFPQFYQTEQKHR--------SLILGMKKTRPQGSGQQL----- 219

Query: 213 GGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
                 +G +     G+  + + + +  Q    +++    VT+++      +   + NG+
Sbjct: 220 --TAKKQGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSCYSL-ELDNGV 274

Query: 273 EIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADP 332
            + A  V+     K     ++     +      ++++   S    + +            
Sbjct: 275 TLDADSVIVTAPHK-AAAGMLS----ELPAISHLKNMHSTSVAN-VALGFP--------- 319

Query: 333 NPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP 373
              E +VQ  H G+  +   +      A     +  P   P
Sbjct: 320 ---EGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAP 357

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 216 EGVKGAWAYPEGGMG---AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL 272
           + V GA   P G      A+ Q   R  + +  Q+  +    EI       A  V  +  
Sbjct: 137 DKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIR--RVDGAWEVRCDAG 194

Query: 273 EIKAKYV 279
             +A  +
Sbjct: 195 SYRAAVL 201

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 57/350 (16%), Positives = 96/350 (27%), Gaps = 75/350 (21%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSL 53
            G +GL  A +L   G    +LE    LGGA  T   + G+           R     +L
Sbjct: 24  GGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRAL 82

Query: 54  L-----------------RPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTL 96
                             R ++Y    L    +        +   L        A  L  
Sbjct: 83  AAALNLEGRIRAADPAAKRRYVYTRGRL--RSVPASPPAFLASDILPLGARLRVAGELFS 140

Query: 97  GLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD-IAPHDFGNLLMYNLFTRR 155
              P+   E +A F  +                 LLD +   I   D   L         
Sbjct: 141 RRAPEGVDESLAAF-GRRHLGHRATQ-------VLLDAVQTGIYAGDVEQL--------- 183

Query: 156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGA 215
                       S  +      + E    +L+   +        +   +        G A
Sbjct: 184 ------------SVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA--------GTA 223

Query: 216 EGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTN--GLE 273
             + GA +  +GG+  +  ALA    + G        V  +  +       +  +    E
Sbjct: 224 PKLSGALSTFDGGLQVLIDALAA---SLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 280

Query: 274 IKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALK 323
           +    V+    A      L+    LD+     V  I YA P+  +++   
Sbjct: 281 LSVAQVVLAAPAH-ATAKLLR--PLDDALAALVAGIAYA-PIAVVHLGFD 326

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 43.6 bits (102), Expect = 9e-05
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 2   AGHNGLVSAAYLA--RAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY 59
           AG +GL +A  +A  R  L V ++E     GG +     + G  FS    ++        
Sbjct: 73  AGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW----LGGQLFSAM--VMRKPAHLFL 126

Query: 60  KDL--ELKKHGLKLLTRDPRSYTPLSPDKWTNKA 91
           ++L    +  G  ++ +       L      +K 
Sbjct: 127 QELEIPYEDEGDYVVVKHA----ALFISTVLSKV 156

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 76/534 (14%), Positives = 140/534 (26%), Gaps = 90/534 (16%)

Query: 2   AGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIY 59
           AG  GL +A+ L + G+    VLE R  +GG   T     G ++   AS+    L   ++
Sbjct: 16  AGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLF 75

Query: 60  ---KDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQ 116
                L L     + +  D             +         D +   E +     K A+
Sbjct: 76  LEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDH--------DKELLLEIVDNEMSKFAE 127

Query: 117 NFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDW 176
                   + + +             F  L+M  L  RR  + +            L  W
Sbjct: 128 LEFHQHLGVSDCS-------------FFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELW 174

Query: 177 FESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQAL 236
                                        +       G +G             +V Q +
Sbjct: 175 HGL----------------------DWKLLSAKDTYFGHQGR----NAFALNYDSVVQRI 208

Query: 237 ARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKG 296
           A+S       L  S  V  IT +  K  +    +G    A YV+         L + P+ 
Sbjct: 209 AQSF--PQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEK 266

Query: 297 N----------LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGS 346
           N          L      A   I + + + K+    +      ++ +    T+    +  
Sbjct: 267 NLRGRIEFQPPLKPVIQDAFDKIHFGA-LGKVIFEFEE--CCWSNESSKIVTLANSTNEF 323

Query: 347 IHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKL 406
           + +                +       +     P    N     G     +        L
Sbjct: 324 VEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVAS-FMM--LMQAPL 380

Query: 407 AGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGAL 466
               +   EDK    +     + +       + V  + + P  +E               
Sbjct: 381 TNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVI-DGMRP--IENIAN----------- 426

Query: 467 SLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRL 520
                  N+P+      S +T  P+     S   PG         ++    +R+
Sbjct: 427 ------ANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRI 474

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 2   AGHNGLVSAAYLAR-AGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYK 60
           AG  GL +A  +++   + VA++E+    GG A     + G  FS               
Sbjct: 47  AGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA----WLGGQLFSAMIVRKPAHLFLDEI 102

Query: 61  DLELKKHGLKLLTRDPRSYT 80
            +   +    ++ +    +T
Sbjct: 103 GVAYDEQDTYVVVKHAALFT 122

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 2   AGHNGLVSAAYLA--RAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY 59
           AG  GL +A  L+  R  L + ++E     GG A     + G  FS              
Sbjct: 87  AGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA----WLGGQLFSAMVMRKPA--DVFL 140

Query: 60  KDL--ELKKHGLKLLTRDPRSYTPLSPDKWTNKA 91
            ++    +  G  ++ +    +T     K   + 
Sbjct: 141 DEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRP 174

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKY 278
                + E       +A    A+A GA++ T   V +  +  D     + T      A  
Sbjct: 143 NSGVLFSEN----CIRAYRELAEARGAKVLTHTRVEDFDISPDSV--KIETANGSYTADK 196

Query: 279 VL 280
           ++
Sbjct: 197 LI 198

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYV 279
             +   E       +   + A+ +G     +  VT I  D D     + T   E +AK  
Sbjct: 143 SGFLRSE----LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVT--IETADGEYQAKKA 196

Query: 280 L 280
           +
Sbjct: 197 I 197

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 53/341 (15%), Positives = 104/341 (30%), Gaps = 48/341 (14%)

Query: 6   GLVSAAYLARA--GLSVAVLERRHVLGGAAVTEEIIPGFQF--------SRASYLLSLLR 55
           GL +A Y  RA   L++ +LE    LGG   T     GF          +R   L  L+ 
Sbjct: 16  GLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIE 74

Query: 56  PHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGL-DPQKNYEQIARFSVKD 114
                 + L   G KL+  +      L         K   +G+      + Q    + ++
Sbjct: 75  -----AIGL---GEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEE 126

Query: 115 AQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILN 174
                      +E+ +LL    D       ++ +      R     V  L+      I  
Sbjct: 127 K----------QEVADLLLHPSDSLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYA 176

Query: 175 DWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGV------KGAWAYPEGG 228
              +     AT      +       S      L+  +    +         G +   E G
Sbjct: 177 GNIDQMSTFATY--PQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETG 234

Query: 229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCT 288
           + ++ + L        +++     +  I+ +  +    + T+     A YVL        
Sbjct: 235 LESLIERLE--EVLERSEIRLETPLLAISREDGRYR--LKTDHGPEYADYVLLTIPHP-Q 289

Query: 289 LLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFL 329
           ++ L+P  +L       ++ +   S  T   +  +     +
Sbjct: 290 VVQLLPDAHLP-----ELEQLTTHSTATVTMIFDQQQSLPI 325

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 50/333 (15%), Positives = 92/333 (27%), Gaps = 48/333 (14%)

Query: 2   AGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYK 60
           AG  GL +A  L   G  +  + E     GG + +     GF +    +++     +   
Sbjct: 17  AGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDD 76

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNY-----EQIARFSVKDA 115
            ++    G  +L R+   +       +  +     L    +K          AR   +  
Sbjct: 77  VMDWAVQGWNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHARTYTEPP 136

Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILND 175
            NFE                 +     FG  +  ++F R    K    +       +  +
Sbjct: 137 NNFE-----------------ESFTRQFGEGI-ADIFMRPYNFK----VWAVPPCLMSTE 174

Query: 176 WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
           W E       L                   +  +    G            GG G + QA
Sbjct: 175 WVEERVAPVDL-------------ERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQA 221

Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPK 295
           +     +      +      I  D+        +NG  +   Y++S T     LL +   
Sbjct: 222 IKEKLPSEKLTFNSGFQAIAIDADAKTI---TFSNGEVVSYDYLIS-TVPFDNLLRMTKG 277

Query: 296 GNLD--ERTTQAVQSIDYASPVTKINVALKSIP 326
                 +        + Y S    I + +K  P
Sbjct: 278 TGFKGYDEWPAIADKMVY-SSTNVIGIGVKGTP 309

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 40/305 (13%)

Query: 2   AGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY- 59
           AG  GL +A  L +  G S  +++     GG A T+    GF +            H+  
Sbjct: 18  AGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVG--------GHVIF 69

Query: 60  -KDLELKKHGLKLLTRDP--RSYTPLSPDKWTNKAKSLTLGLD-PQKNYEQIARFSVKDA 115
                      + L ++    ++  +S  +   +        +      E+  +      
Sbjct: 70  SHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMI 129

Query: 116 QNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILND 175
               +      +     + +  +     G  +                            
Sbjct: 130 DAALEARVANTKPKTFDEWIVRM----MGTGIADLFMRPYNFKVWAVPTTKMQC-----A 180

Query: 176 WFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA 235
           W         L                T+ V+L    G             GG G +  A
Sbjct: 181 WLGERVAAPNL-------------KAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIA 227

Query: 236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPK 295
           +A +      +      VT++  ++       + +G  I  K ++S       L + +  
Sbjct: 228 VANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAVD-FLAEAMND 283

Query: 296 GNLDE 300
             L  
Sbjct: 284 QELVG 288

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY-- 59
           AG  G V A  LA +G  V +++RR  +GG A       G              PHI+  
Sbjct: 37  AGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHP-------YGPHIFHT 89

Query: 60  ----------KDLELKKHGLKLLTRDPRSYTPLSPDKWT-NKAKSLTLGLDPQKNYEQIA 108
                     +  E + +  ++L        P+  +  T N+   L L     + +    
Sbjct: 90  NSKDVFEYLSRFTEWRPYQHRVLASVDGQLLPIPINLDTVNRLYGLNLTSFQVEEFFASV 149

Query: 109 RFSVKDAQNFEKY 121
              V+  +  E  
Sbjct: 150 AEKVEQVRTSEDV 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.98
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.97
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.97
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.96
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.95
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.95
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.95
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.94
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.94
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.93
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.93
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.92
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.91
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.91
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.88
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.87
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.85
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.83
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.83
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.81
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.81
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.81
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.81
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.78
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.69
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.65
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.61
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.47
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.42
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.42
3dme_A	369	Conserved exported protein; structural genomics, P	99.09
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.99
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.95
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.93
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.83
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.82
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.81
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.78
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.78
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.76
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.73
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.7
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.7
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.68
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.65
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.65
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.63
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.6
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.6
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.57
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.57
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.56
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.55
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.46
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.42
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.41
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.23
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.23
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.21
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.18
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.15
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.15
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.14
3atr_A	453	Conserved archaeal protein; saturating double bond	98.14
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.11
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.09
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.07
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.06
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.04
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.03
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.03
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.03
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.01
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.99
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.99
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.94
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.93
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.93
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.93
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.91
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.79
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.68
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.62
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.56
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.47
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.09
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.08
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.06
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.06
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.03
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.02
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.0
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.0
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.99
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.99
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.98
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.98
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	96.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.96
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.96
4dna_A	463	Probable glutathione reductase; structural genomic	96.93
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.92
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.92
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.89
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.88
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.85
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.84
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.82
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.81
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.79
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.77
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.76
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.75
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.75
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.73
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.72
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	96.72
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.72
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.67
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.67
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.67
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.64
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.63
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.61
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.59
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.58
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.56
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.55
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.55
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.54
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.5
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.5
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.49
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.47
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.45
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.44
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.43
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.42
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.39
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.39
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.38
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.36
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.31
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.3
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.3
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.25
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.22
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.2
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.2
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.17
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.14
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.1
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.01
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	95.98
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.91
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.89
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.74
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	95.73
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.71
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.68
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.68
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.63
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.62
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	95.61
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.6
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.59
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.58
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	95.56
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.49
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.49
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.47
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.42
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.4
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.39
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.33
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	95.26
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.21
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.07
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.04
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.93
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	94.89
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.87
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	94.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	94.83
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.78
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.75
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	94.65
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.59
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	94.58
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.56
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.52
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.52
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.47
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.44
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	94.3
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	94.3
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.3
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.26
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	94.2
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.2
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.12
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.12
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.04
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.99
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	93.94
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.81
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	93.78
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.64
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.56
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.54
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	93.51
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	93.46
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	93.45
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.22
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.07
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.05
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	92.83
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.62
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	92.61
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	92.57
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.4
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	92.32
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	92.09
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.01
4dna_A	463	Probable glutathione reductase; structural genomic	91.9
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	91.9
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	91.88
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	91.58
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	91.57
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	91.54
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	91.34
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	91.23
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	90.98
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	90.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.86
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	90.85
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	90.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	90.72
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	90.7
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	90.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.49
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.15
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	90.1
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	90.02
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.76
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	89.59
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	89.47
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	89.47
1ojt_A	482	Surface protein; redox-active center, glycolysis,	88.95
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	88.78
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	88.44
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	88.42
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	88.38
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	88.33
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	88.01
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	87.99
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	87.66
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	87.5
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	87.35
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	87.01
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	86.92
2bry_A	497	NEDD9 interacting protein with calponin homology a	86.48
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	86.44
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	86.41
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	86.29
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	86.15
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	85.87
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	85.84
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	85.76
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	85.76
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	85.55
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	85.16
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	85.11
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	84.89
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	84.51
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	84.28
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.22
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	83.95
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	83.91
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	83.61
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	83.29
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	83.17
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	82.87
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	82.87
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.78
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	82.59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.21
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	82.13
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	81.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	81.55
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	81.49
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	80.19

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1.3e-64  Score=528.98  Aligned_cols=475  Identities=22%  Similarity=0.347  Sum_probs=306.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh--hhhhccccc--cccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR--PHIYKDLEL--KKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~--~~~~~~lgl--~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++|++|+||||++++||+++|++ .+||.||.|++++....  ..+++.++.  .+. +++.+.++
T Consensus         8 GaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~   85 (501)
T 4dgk_A            8 GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVITDPSAIEELFALAGKQLKEY-VELLPVTP   85 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBSCTHHHHHHHHTTTCCGGGT-CCEEEESS
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeecCchhHHHHHHHhcchhhhc-eeeEecCc
Confidence            8999999999999999999999999999999999998 79999999998853221  245555553  232 66766665


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHH-hhhhcCCCChhhHHHHHHHhcc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLD-PLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      . +...+.+     |+.+.++.|.+++.+.+.++++.+.+.+.+|++.+.++.+... .+...+.....++...  ....
T Consensus        86 ~-~~~~~~~-----g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  157 (501)
T 4dgk_A           86 F-YRLCWES-----GKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRA--APQL  157 (501)
T ss_dssp             S-EEEEETT-----SCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHS--GGGT
T ss_pred             c-eEEEcCC-----CCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhh--hhhh
Confidence            3 3333343     8889999999999999999999999999999888777654321 2222222333322111  1111


Q ss_pred             ccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHHHHHHH
Q psy893          156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA  235 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~  235 (523)
                      ..+.     ...++.+++.++|.++.++.++...+.... ..|...++.+.++++.    ....|.| +|+||+++|+++
T Consensus       158 ~~l~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~~~~~~----~~~~G~~-~p~GG~~~l~~a  226 (501)
T 4dgk_A          158 AKLQ-----AWRSVYSKVASYIEDEHLRQAFSFHSLLVG-GNPFATSSIYTLIHAL----EREWGVW-FPRGGTGALVQG  226 (501)
T ss_dssp             TTSH-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-SCC--CCCTHHHHHHH----HSCCCEE-EETTHHHHHHHH
T ss_pred             hhhh-----hcccHHHHHHHHhccHHHHhhhhhhhcccC-CCcchhhhhhhhhhhh----hccCCeE-EeCCCCcchHHH
Confidence            1111     124678889999999999998876654322 3566666666655542    2356777 999999999999


Q ss_pred             HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCC
Q psy893          236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASP  314 (523)
Q Consensus       236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  314 (523)
                      |++.++++|++|++|++|++|..++ +++++|+ .||+++.||.||+|++++.++.+|++....+....+++++.+++.+
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~~-~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s  305 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETTG-NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNS  305 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTSCEEECSCEEECCC---------------------------CCE
T ss_pred             HHHHHHHhCCceeeecceeEEEeeC-CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccccCCc
Confidence            9999999999999999999999998 9999999 8999999999999999999888888876666677778888888889


Q ss_pred             eEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHH-HHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCce
Q psy893          315 VTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQ-VFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH  393 (523)
Q Consensus       315 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~  393 (523)
                      .++++++++..+..           +.+|  ++++ .+++.+ +++.|   ..+.++++|++++++||..||+++|+|++
T Consensus       306 ~~~~~~~l~~~~~~-----------l~~~--~i~~-~~~~~~~~~~~~---~~~~~~~~~~~~v~~~s~~dp~~ap~G~~  368 (501)
T 4dgk_A          306 LFVLYFGLNHHHDQ-----------LAHH--TVCF-GPRYRELIDEIF---NHDGLAEDFSLYLHAPCVTDSSLAPEGCG  368 (501)
T ss_dssp             EEEEEEEESSCCTT-----------SCSE--EEEE-ECC----------------CCCEEEEEEECGGGTCGGGSSTTCE
T ss_pred             eeEEEecccCCccc-----------cccc--eecc-ccchhhhccccc---cccccccCCceecccCCCCCCCcCCCCCc
Confidence            99999999976532           3455  7777 344432 33333   23567788999999999999999999999


Q ss_pred             EEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHH-hCCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893          394 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQ-YCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  472 (523)
Q Consensus       394 ~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~-~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  472 (523)
                      ++++++. +|+....+.+| ++.|+++.+++++.|++ ++|+++++|+..++.||.||+++++.++|++||..+.+.|..
T Consensus       369 ~~~~~~~-~p~~~~~~~~~-~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  446 (501)
T 4dgk_A          369 SYYVLAP-VPHLGTANLDW-TVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSA  446 (501)
T ss_dssp             EEEEEEE-ECCTTTSCCCH-HHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC---------------------
T ss_pred             eEEEEEe-cCccccccccH-HHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhcc
Confidence            9888764 55532333355 55789999999999997 469999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ++||.      ...|||+|||+||+|||||+|++||  ||++||++|++||.
T Consensus       447 ~~RP~------~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~  492 (501)
T 4dgk_A          447 WFRPH------NRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI  492 (501)
T ss_dssp             ---------------CCTTEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCC------CCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            88982      3458999999999999999999987  99999999999984

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=1.4e-35  Score=302.88  Aligned_cols=401  Identities=20%  Similarity=0.221  Sum_probs=253.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhh-hh----hhhhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLS-LL----RPHIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~-~~----~~~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++|++|+||||++++||+++++. .+|+.+|.|++++. ..    ...+++++|++..   +...+
T Consensus         7 GaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~---~~~~~   82 (425)
T 3ka7_A            7 GAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVN---IVRSE   82 (425)
T ss_dssp             CCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCC---EEECC
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCCccHHHHHHHHhCCCce---EEecC
Confidence            8999999999999999999999999999999999987 78999999964421 11    1256777776422   22222


Q ss_pred             CCCcccCCCC---cccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           76 PRSYTPLSPD---KWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        76 ~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                      .........+   .+...++.+.+. ..      ...+...+.      .    ++...+... ....            
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~------~----~~~~~~~~~-~~~~------------  132 (425)
T 3ka7_A           83 MTTVRVPLKKGNPDYVKGFKDISFN-DF------PSLLSYKDR------M----KIALLIVST-RKNR------------  132 (425)
T ss_dssp             CCEEEEESSTTCCSSTTCEEEEEGG-GG------GGGSCHHHH------H----HHHHHHHHT-TTSC------------
T ss_pred             CceEEeecCCCcccccccccceehh-hh------hhhCCHHHH------H----HHHHHHHhh-hhcC------------
Confidence            1100000000   000001111111 00      000111110      0    000000000 0000            


Q ss_pred             hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchH--HHHHHHHhhcccCCCCceeecCCCHH
Q psy893          153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTS--YVLLHHVMGGAEGVKGAWAYPEGGMG  230 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~gG~~  230 (523)
                        .         ...++.+++.+++.++.++.++...........+...++.  +..+....    ...+.+ ++.||++
T Consensus       133 --~---------~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~~~~~-~~~gG~~  196 (425)
T 3ka7_A          133 --P---------SGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMY----RFGGTG-IPEGGCK  196 (425)
T ss_dssp             --C---------CSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HHCSCE-EETTSHH
T ss_pred             --C---------CCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHH----hcCCcc-ccCCCHH
Confidence              0         1247788899999988888776544321111345444442  22222211    123444 8999999


Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCC-CCC--CHHHHHHHh
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPK-GNL--DERTTQAVQ  307 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~-~~~--~~~~~~~~~  307 (523)
                      .++++|++.++++|++|+++++|++|..++ +++++|+.+|++++||.||+|++++.+ .+|+++ ..+  ++.+.++++
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~gv~~~g~~~~ad~VV~a~~~~~~-~~ll~~~~~~~~~~~~~~~~~  274 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIEN-GKAAGIIADDRIHDADLVISNLGHAAT-AVLCSEALSKEADAAYFKMVG  274 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTEEEECSEEEECSCHHHH-HHHTTTTCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEEC-CEEEEEEECCEEEECCEEEECCCHHHH-HHhcCCcccccCCHHHHHHhh
Confidence            999999999999999999999999999988 888778866889999999999999996 578864 334  777888898


Q ss_pred             cCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCC
Q psy893          308 SIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTL  387 (523)
Q Consensus       308 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~  387 (523)
                      ++.++ +.+++++++++++             ..+|  ++++ ..+                 ..+...++++|..||++
T Consensus       275 ~~~~~-~~~~v~l~~~~~~-------------~~~~--~~~~-~~~-----------------~~~~~~~~~~s~~~p~~  320 (425)
T 3ka7_A          275 TLQPS-AGIKICLAADEPL-------------VGHT--GVLL-TPY-----------------TRRINGVNEVTQADPEL  320 (425)
T ss_dssp             HCCCB-EEEEEEEEESSCS-------------SCSS--SEEE-CCS-----------------SSSEEEEECGGGTCGGG
T ss_pred             CcCCC-ceEEEEeecCCCc-------------cCcC--EEEE-CCC-----------------hhhcceEEeccCCCCCc
Confidence            88876 6788999999764             1234  5666 332                 12456788999999999


Q ss_pred             CCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCccc
Q psy893          388 SPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALS  467 (523)
Q Consensus       388 ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~  467 (523)
                      +|+|+++++++.. .++      ++.+ ..++..++++++|++++|+.+..++  .+.   .|..  ..|...+   .+ 
T Consensus       321 ap~G~~~l~~~~~-~~~------~~~~-~~~~~~~~~~~~l~~~~p~~~~~~~--~v~---~~~~--~~P~~~~---~~-  381 (425)
T 3ka7_A          321 APPGKHLTMCHQY-VAP------ENVK-NLESEIEMGLEDLKEIFPGKRYEVL--LIQ---SYHD--EWPVNRA---AS-  381 (425)
T ss_dssp             SCTTCEEEEEEEE-ECG------GGGG-GHHHHHHHHHHHHHHHSTTCCEEEE--EEE---EEBT--TBCSBSS---CT-
T ss_pred             CCCCCeEEEEEec-ccc------cccc-chHHHHHHHHHHHHHhCCCCceEEE--EEE---EECC--Ccccccc---cc-
Confidence            9999998876542 211      1112 2245579999999999998543333  221   2221  1111111   10 


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCeEecCCCCCC--CCCCCCc--cHHHHHHHHH
Q psy893          468 LNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVN  518 (523)
Q Consensus       468 ~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~p--g~g~~~a--sG~~aA~~i~  518 (523)
                           ..+|       ..+||++|||+||||+++  |.|+++|  ||+.||++|+
T Consensus       382 -----~~~~-------~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          382 -----GTDP-------GNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             -----TCCC-------CSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             -----CCCC-------CCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence                 1234       678999999999999988  5566776  9999999987

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=5.6e-34  Score=290.40  Aligned_cols=385  Identities=21%  Similarity=0.236  Sum_probs=247.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhh-----hhhhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL-----RPHIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~-----~~~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++|++|+||||++++||+++++. .+|+.+|.|++++...     ...+++++++.   .++...+
T Consensus         7 GaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~---~~~~~~~   82 (421)
T 3nrn_A            7 GAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRILGAK---VEIVNSN   82 (421)
T ss_dssp             SCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTTSSHHHHHHHHHTCC---CCEEECS
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCCChHHHHHHHHhCCc---ceEEECC
Confidence            8999999999999999999999999999999999987 7899999997543111     12567777654   3343333


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      +.. ...++      ++.+.++...       ..+.+.+...+..+....   .    ..  ..+               
T Consensus        83 ~~~-~~~~~------g~~~~~~~~~-------~~l~~~~~~~~~~~~~~~---~----~~--~~~---------------  124 (421)
T 3nrn_A           83 PKG-KILWE------GKIFHYRESW-------KFLSVKEKAKALKLLAEI---R----MN--KLP---------------  124 (421)
T ss_dssp             SSC-EEEET------TEEEEGGGGG-------GGCC--------CCHHHH---H----TT--CCC---------------
T ss_pred             CCe-EEEEC------CEEEEcCCch-------hhCCHhHHHHHHHHHHHH---H----hc--cCC---------------
Confidence            321 11112      4444333211       112211111111110000   0    00  000               


Q ss_pred             ccHHHHHHHHhhcHHHHHHhh-cCChHHHHHHhhhhhccCCCCCCCcch--HHHHHHHHhhcccCCCCceeecCCCHHHH
Q psy893          156 GEMKDVYSLLTCSAFSILNDW-FESEPLKATLLTDGLIGAMVSPHSPST--SYVLLHHVMGGAEGVKGAWAYPEGGMGAV  232 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~gG~~~l  232 (523)
                      .        ...++.+++.++ +.++.++.++...........+...++  .+..+....    ...+.+ +++||++.+
T Consensus       125 ~--------~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~-~~~gG~~~l  191 (421)
T 3nrn_A          125 K--------EEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL----RWGGPG-LIRGGCKAV  191 (421)
T ss_dssp             C--------CCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HHCSCE-EETTCHHHH
T ss_pred             C--------CCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHh----hcCCcc-eecCCHHHH
Confidence            0        014677888888 888888776654332111134444444  222232221    123444 899999999


Q ss_pred             HHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCC
Q psy893          233 SQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYA  312 (523)
Q Consensus       233 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  312 (523)
                      +++|++.++++|++|+++++|++|..++ +++  |..+|++++||.||+|++++.+ .+|++.+.+++.+.++++++.++
T Consensus       192 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~v--V~~~g~~~~ad~Vv~a~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~  267 (421)
T 3nrn_A          192 IDELERIIMENKGKILTRKEVVEINIEE-KKV--YTRDNEEYSFDVAISNVGVRET-VKLIGRDYFDRDYLKQVDSIEPS  267 (421)
T ss_dssp             HHHHHHHHHTTTCEEESSCCEEEEETTT-TEE--EETTCCEEECSEEEECSCHHHH-HHHHCGGGSCHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEEEC-CEE--EEeCCcEEEeCEEEECCCHHHH-HHhcCcccCCHHHHHHHhCCCCC
Confidence            9999999999999999999999999877 665  6667778999999999999986 57887545777888889999887


Q ss_pred             CCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCc
Q psy893          313 SPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGH  392 (523)
Q Consensus       313 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~  392 (523)
                       +.+++++++++++             +.+|  ++++ .++.                 . ...++++|..||+++|+|+
T Consensus       268 -~~~~v~l~~~~~~-------------~~~~--~~~~-~~~~-----------------~-~~~i~~~s~~~p~~ap~G~  312 (421)
T 3nrn_A          268 -EGIKFNLAVPGEP-------------RIGN--TIVF-TPGL-----------------M-INGFNEPSALDKSLAREGY  312 (421)
T ss_dssp             -CEEEEEEEEESSC-------------SSCS--SEEE-CTTS-----------------S-SCEEECGGGTCGGGSCTTE
T ss_pred             -ceEEEEEEEcCCc-------------ccCC--eEEE-cCCc-----------------c-eeeEeccCCCCCCcCCCCc
Confidence             7899999999753             1334  4566 3321                 1 2357889999999999999


Q ss_pred             eEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccc
Q psy893          393 HVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  472 (523)
Q Consensus       393 ~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~  472 (523)
                      +++.+... .+.      . +  . ++..+.++++|++++|  ...++.....     ..  +.|.   |+...      
T Consensus       313 ~~~~~~~~-~~~------~-~--~-~~~~~~~~~~L~~~~p--~~~~~~~~~~-----~~--~~p~---~~~~~------  363 (421)
T 3nrn_A          313 TLIMAHMA-LKN------G-N--V-KKAIEKGWEELLEIFP--EGEPLLAQVY-----RD--GNPV---NRTRA------  363 (421)
T ss_dssp             EEEEEEEE-CTT------C-C--H-HHHHHHHHHHHHHHCT--TCEEEEEEEC---------------------------
T ss_pred             eEEEEEEe-ecc------c-c--H-HHHHHHHHHHHHHHcC--CCeEEEeeec-----cC--CCCc---ccccC------
Confidence            98876642 321      1 1  1 2448899999999999  3233322222     11  1111   11000      


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCC--CCc--cHHHHHHHH
Q psy893          473 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGV--CGA--PGYIAAQMV  517 (523)
Q Consensus       473 ~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~--~~a--sG~~aA~~i  517 (523)
                      ..++       . .++ +|||+|||++.+++|+  ++|  ||.+||++|
T Consensus       364 ~~~~-------~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          364 GLHI-------E-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             --CC-------C-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCCC-------C-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            0111       4 678 9999999999887778  877  999999998

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.98  E-value=1.9e-31  Score=279.07  Aligned_cols=423  Identities=17%  Similarity=0.118  Sum_probs=252.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|||+++++||++++.+..+|+.+|.|++++....+   .+++++|++.     ......
T Consensus        11 GaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~-----~~~~~~   85 (520)
T 1s3e_A           11 GGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLET-----YKVNEV   85 (520)
T ss_dssp             CCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCE-----EECCCS
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcc-----eecccC
Confidence            89999999999999999999999999999999999873248999999887654333   4556666542     221111


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      ....+..     +|+.+.+......      .+.+.+...+.+++..+.++...+.   ...  .+.          ...
T Consensus        86 ~~~~~~~-----~g~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~----------~~~  139 (520)
T 1s3e_A           86 ERLIHHV-----KGKSYPFRGPFPP------VWNPITYLDHNNFWRTMDDMGREIP---SDA--PWK----------APL  139 (520)
T ss_dssp             SEEEEEE-----TTEEEEECSSSCC------CCSHHHHHHHHHHHHHHHHHHTTSC---TTC--GGG----------STT
T ss_pred             CceEEEE-----CCEEEEecCCCCC------CCCHHHHHHHHHHHHHHHHHHhhcC---cCC--Ccc----------ccc
Confidence            1111101     1333332221000      0111122223333333333322110   000  000          000


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh--ccCCCCCCCcchHHHHHHHHhhc------cc-CCCCceeecCCC
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL--IGAMVSPHSPSTSYVLLHHVMGG------AE-GVKGAWAYPEGG  228 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~g~~~~~~gG  228 (523)
                         .......|+.+++.+++.++.++.++.....  ++  ..+.+.++.+.+. +....      .. ...+.+.+++||
T Consensus       140 ---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~~~~~s~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~gG  213 (520)
T 1s3e_A          140 ---AEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVT--AETHEVSALWFLW-YVKQCGGTTRIISTTNGGQERKFVGG  213 (520)
T ss_dssp             ---HHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHS--SCTTTSBHHHHHH-HHHTTTCHHHHHCSTTSTTSEEETTC
T ss_pred             ---hhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcC--CChHHhHHHHHHH-HHhhcCchhhhcccCCCcceEEEeCC
Confidence               1123457899999999999988887765432  33  3556655554322 21110      00 012223488999


Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHh
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQ  307 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~  307 (523)
                      ++.|+++|++.+   |++|++|++|++|..++ ++++ |+ .+|+++.||+||+|+|+..+ .+++..+.+++...+.++
T Consensus       214 ~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l-~~l~~~p~lp~~~~~~i~  287 (520)
T 1s3e_A          214 SGQVSERIMDLL---GDRVKLERPVIYIDQTR-ENVL-VETLNHEMYEAKYVISAIPPTLG-MKIHFNPPLPMMRNQMIT  287 (520)
T ss_dssp             THHHHHHHHHHH---GGGEESSCCEEEEECSS-SSEE-EEETTSCEEEESEEEECSCGGGG-GGSEEESCCCHHHHHHTT
T ss_pred             HHHHHHHHHHHc---CCcEEcCCeeEEEEECC-CeEE-EEECCCeEEEeCEEEECCCHHHH-cceeeCCCCCHHHHHHHH
Confidence            999999999865   78999999999999887 6665 66 78889999999999999985 677655568888888888


Q ss_pred             cCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCC
Q psy893          308 SIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTL  387 (523)
Q Consensus       308 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~  387 (523)
                      ++.+. +++++++.++++ .|.          ...+.+.++...+                  ..+..++..+     +.
T Consensus       288 ~~~~~-~~~kv~l~~~~~-~w~----------~~~~~g~~~~~~~------------------~~~~~~~~d~-----~~  332 (520)
T 1s3e_A          288 RVPLG-SVIKCIVYYKEP-FWR----------KKDYCGTMIIDGE------------------EAPVAYTLDD-----TK  332 (520)
T ss_dssp             SCCBC-CEEEEEEECSSC-GGG----------GGTEEEEEEECST------------------TCSCSEEEEC-----CC
T ss_pred             hCCCc-ceEEEEEEeCCC-ccc----------CCCCCceeeccCC------------------CCceEEEeeC-----CC
Confidence            88875 789999999875 331          0111223332111                  1233233222     22


Q ss_pred             CCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhc----CCCCCcccc
Q psy893          388 SPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEF----GLTGGNIFH  463 (523)
Q Consensus       388 ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~----~~~~G~~~g  463 (523)
                      .|.++.++..++...+.     ..|.+..++++.+.+++.|++++|.-.       +.+|.++....    ....|+..+
T Consensus       333 ~~~~~~~l~~~~~~~~a-----~~~~~~~~~e~~~~vl~~L~~~~~~~~-------~~~p~~~~~~~W~~~~~~~G~~~~  400 (520)
T 1s3e_A          333 PEGNYAAIMGFILAHKA-----RKLARLTKEERLKKLCELYAKVLGSLE-------ALEPVHYEEKNWCEEQYSGGCYTT  400 (520)
T ss_dssp             TTSCSCEEEEEEETHHH-----HHHTTSCHHHHHHHHHHHHHHHHTCGG-------GGCCSEEEEEEGGGCTTTCSSSCB
T ss_pred             CCCCCCEEEEEccchhh-----hhhhcCCHHHHHHHHHHHHHHHhCccc-------cCCccEEEEEeeCCCCCCCCCCcc
Confidence            23334555555432111     134444578899999999999987521       12333322211    223454321


Q ss_pred             CcccccccccCCCCCCCCCCCCCCCCCCeEecCCCC---CCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          464 GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGA---HPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       464 ~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~---~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      . ..+.+....++       ..++|++||||||+++   ++| +++||  ||.+||++|++.++
T Consensus       401 ~-~~~g~~~~~~~-------~l~~p~~~L~fAG~~t~~~~~g-~v~GAi~SG~~aA~~i~~~l~  455 (520)
T 1s3e_A          401 Y-FPPGILTQYGR-------VLRQPVDRIYFAGTETATHWSG-YMEGAVEAGERAAREILHAMG  455 (520)
T ss_dssp             C-CCTTHHHHHGG-------GTTCCBTTEEECSGGGCSSSTT-SHHHHHHHHHHHHHHHHHHTT
T ss_pred             c-cCCCccccchH-------HHhCCCCCEEEeehhhcCcCcE-EhHHHHHHHHHHHHHHHHHHh
Confidence            1 11222212233       4577899999999987   443 78887  99999999999874

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.97  E-value=2.5e-30  Score=266.08  Aligned_cols=420  Identities=17%  Similarity=0.142  Sum_probs=244.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|||+++++||++.+.. .+|+.+|.|++++....+   .+++++|++.     ......
T Consensus        12 G~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~   85 (453)
T 2yg5_A           12 GAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDT-IDGAVLEIGGQWVSPDQTALISLLDELGLKT-----FERYRE   85 (453)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEE-ETTEEEECSCCCBCTTCHHHHHHHHHTTCCE-----EECCCC
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccc-cCCceeccCCeEecCccHHHHHHHHHcCCcc-----cccccC
Confidence            8999999999999999999999999999999999887 579999999887543333   4566666542     111111


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      ....+..    .+++.+.+....       ..+.+.....+.++...+.++.+.+.   ...+  +.          .. 
T Consensus        86 ~~~~~~~----~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~----------~~-  138 (453)
T 2yg5_A           86 GESVYIS----SAGERTRYTGDS-------FPTNETTKKEMDRLIDEMDDLAAQIG---AEEP--WA----------HP-  138 (453)
T ss_dssp             SEEEEEC----TTSCEEEECSSS-------CSCCHHHHHHHHHHHHHHHHHHHHHC---SSCG--GG----------ST-
T ss_pred             CCEEEEe----CCCceeeccCCC-------CCCChhhHHHHHHHHHHHHHHHhhcC---CCCC--CC----------Cc-
Confidence            1000000    002222221110       00111111222222322333222110   0000  00          00 


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCC-CcchHHHHHHHHhhccc------CCCCceeecCCCHH
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPH-SPSTSYVLLHHVMGGAE------GVKGAWAYPEGGMG  230 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~g~~~~~~gG~~  230 (523)
                        ....+...|+.+++.+++.++.++.++...........|. +.++.+.+. +......      ...+.+.+++||++
T Consensus       139 --~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~gG~~  215 (453)
T 2yg5_A          139 --LARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVL-MAASAGSFSHLVDEDFILDKRVIGGMQ  215 (453)
T ss_dssp             --THHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHH-HHHHTTCHHHHHCHHHHTCEEETTCTH
T ss_pred             --chhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHH-HhccCCcHhhhccCCCcceEEEcCChH
Confidence              0112345789999999999998888776543211113455 555444322 2111000      00011237999999


Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSID  310 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~  310 (523)
                      .|+++|++.+   |++|++|++|++|..++ ++.+.|+.+|+++.||+||+|+++..+ .+|+..+.+|+...+.++++.
T Consensus       216 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~~v~v~~~~~~~~ad~VI~a~p~~~~-~~l~~~p~lp~~~~~~i~~~~  290 (453)
T 2yg5_A          216 QVSIRMAEAL---GDDVFLNAPVRTVKWNE-SGATVLADGDIRVEASRVILAVPPNLY-SRISYDPPLPRRQHQMHQHQS  290 (453)
T ss_dssp             HHHHHHHHHH---GGGEECSCCEEEEEEET-TEEEEEETTTEEEEEEEEEECSCGGGG-GGSEEESCCCHHHHHHGGGEE
T ss_pred             HHHHHHHHhc---CCcEEcCCceEEEEEeC-CceEEEEECCeEEEcCEEEEcCCHHHH-hcCEeCCCCCHHHHHHHhcCC
Confidence            9999999865   78999999999999877 552335567788999999999999974 677655568888888888887


Q ss_pred             CCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCC
Q psy893          311 YASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPP  390 (523)
Q Consensus       311 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~  390 (523)
                      +. +++++++.++++ .|..          ....+.+ + .++                  .+...+..++      .|+
T Consensus       291 ~~-~~~kv~l~~~~~-~w~~----------~~~~g~~-~-~~~------------------~~~~~~~~~~------~~~  332 (453)
T 2yg5_A          291 LG-LVIKVHAVYETP-FWRE----------DGLSGTG-F-GAS------------------EVVQEVYDNT------NHE  332 (453)
T ss_dssp             EC-CEEEEEEEESSC-GGGG----------GTEEEEE-E-CTT------------------SSSCEEEECC------CTT
T ss_pred             Cc-ceEEEEEEECCC-CCCC----------CCCCcee-e-cCC------------------CCeEEEEeCC------CCC
Confidence            75 788999999865 3310          0111122 2 111                  1222222222      344


Q ss_pred             C-ceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhh-----HHHhcCCCCCccccC
Q psy893          391 G-HHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPD-----LEKEFGLTGGNIFHG  464 (523)
Q Consensus       391 G-~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~-----~~~~~~~~~G~~~g~  464 (523)
                      | +.++..++. .+..    +.|.+..++++.+.+++.|++++|.-        +.+|.+     |.+. ....|+..+ 
T Consensus       333 ~~~~~l~~~~~-~~~~----~~~~~~~~~~~~~~~l~~L~~~~~~~--------~~~p~~~~~~~W~~~-~~~~G~~~~-  397 (453)
T 2yg5_A          333 DDRGTLVAFVS-DEKA----DAMFELSAEERKATILASLARYLGPK--------AEEPVVYYESDWGSE-EWTRGCYAA-  397 (453)
T ss_dssp             CSSEEEEEEEE-HHHH----HHHHHSCHHHHHHHHHHHHHHHHCGG--------GGCCSEEEECCTTTC-TTTCSSSCE-
T ss_pred             CCCCEEEEEec-cHHH----HHHhcCCHHHHHHHHHHHHHHHhCcc--------CCCccEEEEeecCCC-CCCCCCCcC-
Confidence            4 445555542 1110    13434456888999999999998741        123333     3221 122444211 


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCeEecCCCCC---CCCCCCCc--cHHHHHHHHHHHhc
Q psy893          465 ALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAH---PGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       465 ~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~---pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ...+.+....+|       ..++|++||||||+++.   +| +++||  ||.+||++|+++++
T Consensus       398 ~~~~g~~~~~~~-------~~~~p~~~l~~aG~~~~~~~~g-~v~gA~~SG~~aA~~i~~~l~  452 (453)
T 2yg5_A          398 SFDLGGLHRYGA-------DSRTPVGPIHFSCSDIAAEGYQ-HVDGAVRMGQRTAADIIARSK  452 (453)
T ss_dssp             EECTTHHHHHGG-------GTTCCBTTEEECCGGGCSTTTT-SHHHHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCccccchH-------HHhCCcCceEEeeccccccccc-chHHHHHHHHHHHHHHHHHhc
Confidence            111111111223       45778999999999973   43 68887  99999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.97  E-value=3.5e-30  Score=266.91  Aligned_cols=413  Identities=15%  Similarity=0.153  Sum_probs=244.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||+.|+++|++|+|||+++++||+++|++ .+|+.+|.|++++....+   .+++++|+... +.....+. 
T Consensus        23 G~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~-~~~~~~~~-   99 (478)
T 2ivd_A           23 GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAALNLEGR-IRAADPAA-   99 (478)
T ss_dssp             CCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHTTCGGG-EECSCSSC-
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeec-cCCeeeecChhhhhhhhHHHHHHHHHcCCcce-eeecCccc-
Confidence            8999999999999999999999999999999999988 689999999988654333   56777776543 22111001 


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      ....++.     +|+.+.++.+...+...  .+.  .   +   .....    .+..++......               
T Consensus       100 ~~~~~~~-----~g~~~~~p~~~~~~~~~--~~~--~---~---~~~~~----~~~~~~~~~~~~---------------  145 (478)
T 2ivd_A          100 KRRYVYT-----RGRLRSVPASPPAFLAS--DIL--P---L---GARLR----VAGELFSRRAPE---------------  145 (478)
T ss_dssp             CCEEEEE-----TTEEEECCCSHHHHHTC--SSS--C---H---HHHHH----HHGGGGCCCCCT---------------
T ss_pred             cceEEEE-----CCEEEECCCCHHHhccC--CCC--C---H---HHHHH----HhhhhhcCCCCC---------------
Confidence            1111111     15555555553321110  010  0   0   01111    111111111000               


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh--ccCCCCCCCcchHHHH--HHH-----------Hhhcc-------
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL--IGAMVSPHSPSTSYVL--LHH-----------VMGGA-------  215 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~-----------~~~~~-------  215 (523)
                            ....|+.+++.+.+.++.++.++.....  ++  ..+.+.++.+.+  +..           +....       
T Consensus       146 ------~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (478)
T 2ivd_A          146 ------GVDESLAAFGRRHLGHRATQVLLDAVQTGIYA--GDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA  217 (478)
T ss_dssp             ------TCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHC--CCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC-
T ss_pred             ------CCCCCHHHHHHHhhCHHHHHHHHHHHhceeec--CCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhcccccc
Confidence                  0124777888887776666655543321  22  345555433221  100           00000       


Q ss_pred             --cC-C----CCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCeEEEcCEEEEcCC
Q psy893          216 --EG-V----KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       216 --~~-~----~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~~~~ad~vI~a~~  284 (523)
                        .. .    .+. .+++||++.|+++|++.+   |++|+++++|++|..++ +++ .|+    .+|++++||+||+|++
T Consensus       218 ~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~-~~~-~v~~~~~~~g~~~~ad~vV~a~~  291 (478)
T 2ivd_A          218 LPAGTAPKLSGAL-STFDGGLQVLIDALAASL---GDAAHVGARVEGLARED-GGW-RLIIEEHGRRAELSVAQVVLAAP  291 (478)
T ss_dssp             ---CCSCCCCCCE-EEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---CC-EEEEEETTEEEEEECSEEEECSC
T ss_pred             CcccccccccccE-EEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecC-CeE-EEEEeecCCCceEEcCEEEECCC
Confidence              00 1    334 489999999999999977   67999999999999877 553 455    2667899999999999


Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHh
Q psy893          285 AKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDA  364 (523)
Q Consensus       285 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  364 (523)
                      ++.+ .+|+++  +++...+.++++.+. +++++++.++++. |.          .+... .+++ ...           
T Consensus       292 ~~~~-~~ll~~--l~~~~~~~l~~~~~~-~~~~v~l~~~~~~-~~----------~~~~~-~~~~-~~~-----------  343 (478)
T 2ivd_A          292 AHAT-AKLLRP--LDDALAALVAGIAYA-PIAVVHLGFDAGT-LP----------APDGF-GFLV-PAE-----------  343 (478)
T ss_dssp             HHHH-HHHHTT--TCHHHHHHHHTCCBC-CEEEEEEEECTTS-SC----------CCCSS-EEEC-CGG-----------
T ss_pred             HHHH-HHHhhc--cCHHHHHHHhcCCCC-cEEEEEEEEcccc-CC----------CCCce-EEEe-cCC-----------
Confidence            9985 577753  778888889998876 7899999998753 21          11111 1222 110           


Q ss_pred             hcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEe
Q psy893          365 TQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEI  444 (523)
Q Consensus       365 ~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~  444 (523)
                           ...+...+.+++..++.++|+|+.++++++. .+.  .  ..|.+..++++.+.+++.|++++|... .++...+
T Consensus       344 -----~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~~~~~  412 (478)
T 2ivd_A          344 -----EQRRMLGAIHASTTFPFRAEGGRVLYSCMVG-GAR--Q--PGLVEQDEDALAALAREELKALAGVTA-RPSFTRV  412 (478)
T ss_dssp             -----GCCSCCEEEEHHHHCGGGBSTTCEEEEEEEE-CTT--C--GGGGGSCHHHHHHHHHHHHHHHHCCCS-CCSEEEE
T ss_pred             -----CCCceEEEEEEcccCCCcCCCCCEEEEEEeC-CcC--C--ccccCCCHHHHHHHHHHHHHHHhCCCC-CCcEEEE
Confidence                 0123344555555567778889887776653 211  1  124344678999999999999998653 2222111


Q ss_pred             cChhhHHHhcCCCCCc-cccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHh
Q psy893          445 LTPPDLEKEFGLTGGN-IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       445 ~tP~~~~~~~~~~~G~-~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~  521 (523)
                      .   .|.      .+. .|..... ......++       ..++ ++|||+||+++ +|.|+++|  ||+.||++|++.+
T Consensus       413 ~---~w~------~~~p~~~~g~~-~~~~~~~~-------~~~~-~~~l~~aG~~~-~g~gv~gA~~SG~~aA~~i~~~l  473 (478)
T 2ivd_A          413 F---RWP------LGIPQYNLGHL-ERVAAIDA-------ALQR-LPGLHLIGNAY-KGVGLNDCIRNAAQLADALVAGN  473 (478)
T ss_dssp             E---EES------SCCBCCBTTHH-HHHHHHHH-------HHHT-STTEEECSTTT-SCCSHHHHHHHHHHHHHHHCC--
T ss_pred             E---ECC------CcccCCCcCHH-HHHHHHHH-------HHhh-CCCEEEEccCC-CCCCHHHHHHHHHHHHHHHHHhh
Confidence            1   121      111 1222110 00100111       1122 68999999998 67789887  9999999998876


Q ss_pred             c
Q psy893          522 R  522 (523)
Q Consensus       522 ~  522 (523)
                      +
T Consensus       474 ~  474 (478)
T 2ivd_A          474 T  474 (478)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.96  E-value=3.3e-28  Score=249.30  Aligned_cols=319  Identities=14%  Similarity=0.125  Sum_probs=200.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCC-ce-ec--------------cchhhhhhh------h---
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPG-FQ-FS--------------RASYLLSLL------R---   55 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G-~~-~d--------------~g~~~~~~~------~---   55 (523)
                      |||++||+||++|+++|++|+||||++++||++++++ .+| |. ||              .|.++....      .   
T Consensus        18 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l~~~~~   96 (453)
T 2bcg_G           18 GTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT-LSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGE   96 (453)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC-HHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEETTSH
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccee-ccchhceeccCCccccCcchhcccccceeeccccceeecCcH
Confidence            8999999999999999999999999999999999987 444 33 44              332221111      1   


Q ss_pred             -hhhhccccccccCceEeecCCCCcccCCCCcccCCCCceeecCC-HHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHH
Q psy893           56 -PHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLD-PQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLD  133 (523)
Q Consensus        56 -~~~~~~lgl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (523)
                       ..+++++|+.++ +++...++ .+. +.+      |+.+.++.+ .+.+...+..++  +...+.+|+..+.++..   
T Consensus        97 l~~ll~~lg~~~~-l~~~~~~~-~~~-~~~------g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~---  162 (453)
T 2bcg_G           97 LTNILIHTDVTRY-VDFKQVSG-SYV-FKQ------GKIYKVPANEIEAISSPLMGIF--EKRRMKKFLEWISSYKE---  162 (453)
T ss_dssp             HHHHHHHHTGGGT-CCEEECCC-EEE-EET------TEEEECCSSHHHHHHCTTSCHH--HHHHHHHHHHHHHHCBT---
T ss_pred             HHHHHHhcCCccc-eEEEEccc-eeE-EeC------CeEEECCCChHHHHhhhccchh--hHHHHHHHHHHHHHhcc---
Confidence             156778887665 67766553 222 212      777777777 554443332221  34445555444433211   


Q ss_pred             hhhhcCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHH---HHH
Q psy893          134 PLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHH  210 (523)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  210 (523)
                          ..+   ..+      ...       .....|+.+++++++.++.++.++...............+....+   ..+
T Consensus       163 ----~~p---~~~------~~~-------~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~  222 (453)
T 2bcg_G          163 ----DDL---STH------QGL-------DLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLY  222 (453)
T ss_dssp             ----TBG---GGS------TTC-------CTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHH
T ss_pred             ----CCc---hhh------hcc-------ccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHH
Confidence                000   000      000       012468889999999999999988654322110000001222222   222


Q ss_pred             HhhcccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEEC--CCCCeEEEEeCCeEEEcCEEEEcCChHHH
Q psy893          211 VMGGAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLD--SDKRASGVVTNGLEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       211 ~~~~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~~~~~v~~~g~~~~ad~vI~a~~~~~~  288 (523)
                      ......+..+.|.+|+||++.|+++|++.+++.|++|+++++|++|..+  + +++++|+.+|+++.||+||+|++++. 
T Consensus       223 ~~s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~~~V~~~g~~~~ad~VV~a~~~~~-  300 (453)
T 2bcg_G          223 CQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT-GKFEGVKTKLGTFKAPLVIADPTYFP-  300 (453)
T ss_dssp             HHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTT-TEEEEEEETTEEEECSCEEECGGGCG-
T ss_pred             HHHHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC-CeEEEEEECCeEEECCEEEECCCccc-
Confidence            2211112245566899999999999999999999999999999999987  6 77777776788999999999999874 


Q ss_pred             HHhhCCCCCCCHHHHHHHhcCC-CCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcC
Q psy893          289 LLDLIPKGNLDERTTQAVQSID-YASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQG  367 (523)
Q Consensus       289 ~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g  367 (523)
                       .++              .+.. ++.+.+++   ++++..+.        ....+|  ++.+ ..              +
T Consensus       301 -~~l--------------~~~~~~~~~~~~i---~~~~~~~~--------~~~~~~--~ii~-~~--------------~  337 (453)
T 2bcg_G          301 -EKC--------------KSTGQRVIRAICI---LNHPVPNT--------SNADSL--QIII-PQ--------------S  337 (453)
T ss_dssp             -GGE--------------EEEEEEEEEEEEE---ESSCCTTS--------TTCSSE--EEEE-CG--------------G
T ss_pred             -hhh--------------cccCCcceeEEEE---EccccCCC--------CCCccE--EEEe-Cc--------------c
Confidence             222              1122 33344444   56543211        012233  5555 21              1


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCceEEEEEec
Q psy893          368 IPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQ  400 (523)
Q Consensus       368 ~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~  400 (523)
                      .++++|+++++.+|..| ++||+|+++++++++
T Consensus       338 ~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v~~~  369 (453)
T 2bcg_G          338 QLGRKSDIYVAIVSDAH-NVCSKGHYLAIISTI  369 (453)
T ss_dssp             GTTCSSCEEEEEEEGGG-TSSCTTCEEEEEEEE
T ss_pred             ccCCCCCEEEEEeCCCC-CCCCCCcEEEEEEEe
Confidence            23456899999999888 899999999887764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.95  E-value=2.5e-27  Score=246.38  Aligned_cols=418  Identities=15%  Similarity=0.106  Sum_probs=238.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhhh---hccccccccCceEeecC--
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHI---YKDLELKKHGLKLLTRD--   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~~---~~~lgl~~~g~~~~~~~--   75 (523)
                      |||++||+||++|+++|++|+|||+++++||+++|.+ .+|+.+|.|++++....+.+   ++++|+.+.   +....  
T Consensus        46 GaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~---~~~~~~~  121 (495)
T 2vvm_A           46 GGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWREITRYKMHNA---LSPSFNF  121 (495)
T ss_dssp             CCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSHHHHHHHHHTTCTTC---EEESCCC
T ss_pred             CCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccHHHHHHHHHcCCcce---eeccccc
Confidence            8999999999999999999999999999999999987 68999999999876555544   444555322   22221  


Q ss_pred             CCCc-ccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHh----HHHhhhhcCCCChhhHHHHH
Q psy893           76 PRSY-TPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITN----LLDPLFDIAPHDFGNLLMYN  150 (523)
Q Consensus        76 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  150 (523)
                      .... ..++.+   ..+....++              ..+.  ...+...+.++.+    ....++..+..+..      
T Consensus       122 ~~~~~~~~~~~---~~g~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  176 (495)
T 2vvm_A          122 SRGVNHFQLRT---NPTTSTYMT--------------HEAE--DELLRSALHKFTNVDGTNGRTVLPFPHDMFY------  176 (495)
T ss_dssp             SSSCCEEEEES---STTCCEEEC--------------HHHH--HHHHHHHHHHHHCSSSSTTTTTCSCTTSTTS------
T ss_pred             CCCceEEEecC---CCCceeecC--------------HHHH--HHHHHHHHHHHHccchhhhhhcCCCCCCccc------
Confidence            1000 000000   001111111              1000  0011111122221    01111111100000      


Q ss_pred             HHhccccHHHHHHHHhhcHHHHHHhhc--CChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcc-----cCCCCcee
Q psy893          151 LFTRRGEMKDVYSLLTCSAFSILNDWF--ESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGA-----EGVKGAWA  223 (523)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~  223 (523)
                          ..   .+..+...|+.+++.++.  .++.++.++...........+.+.+....+........     ....+.+ 
T Consensus       177 ----~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (495)
T 2vvm_A          177 ----VP---EFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSY-  248 (495)
T ss_dssp             ----ST---THHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSE-
T ss_pred             ----Cc---chhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceE-
Confidence                00   112334578899998876  56777766654432111134555544333222111100     0112345 


Q ss_pred             ecCCCHHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHH
Q psy893          224 YPEGGMGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDER  301 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~  301 (523)
                      +++||++.++++|.+.+++.| ++|+++++|++|..++ +++ .|+ .+|++++||+||+|+++..+ .++...+.+|+.
T Consensus       249 ~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~~~l-~~i~~~p~lp~~  325 (495)
T 2vvm_A          249 KFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPLNVL-STIQFSPALSTE  325 (495)
T ss_dssp             EETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCGGGG-GGSEEESCCCHH
T ss_pred             EeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCHHHH-hheeeCCCCCHH
Confidence            789999999999999999998 9999999999999876 554 466 67778999999999999985 566544568888


Q ss_pred             HHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCC
Q psy893          302 TTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPS  381 (523)
Q Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s  381 (523)
                      ..+.++++.+. ++.+|++.++++. |.            .   +..+...+                  .+..++.   
T Consensus       326 ~~~ai~~~~~~-~~~kv~l~~~~~~-~~------------~---~~g~~~~~------------------~~~~~~~---  367 (495)
T 2vvm_A          326 RISAMQAGHVS-MCTKVHAEVDNKD-MR------------S---WTGIAYPF------------------NKLCYAI---  367 (495)
T ss_dssp             HHHHHHHCCCC-CCEEEEEEESCGG-GG------------G---EEEEECSS------------------CSSCEEE---
T ss_pred             HHHHHHhcCCC-ceeEEEEEECCcc-CC------------C---ceeEecCC------------------CCcEEEe---
Confidence            88889888765 7789999998642 20            0   11110111                  1211111   


Q ss_pred             CCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCcc
Q psy893          382 SLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       382 ~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                        +....|+|+.++..++. ..   .   .+.+   ++..+.+++.|++++|+.. .+....+.   .|.+.. ...|+.
T Consensus       368 --~~~~~~~~~~vl~~~~~-~~---~---~~~~---~e~~~~~~~~L~~~~~~~~-~~~~~~~~---~W~~dp-~~~g~y  430 (495)
T 2vvm_A          368 --GDGTTPAGNTHLVCFGN-SA---N---HIQP---DEDVRETLKAVGQLAPGTF-GVKRLVFH---NWVKDE-FAKGAW  430 (495)
T ss_dssp             --EEEECTTSCEEEEEEEC-ST---T---CCCT---TTCHHHHHHHHHTTSTTSC-CEEEEEEC---CTTTCT-TTSSSS
T ss_pred             --cCCCCCCCCeEEEEEeC-cc---c---cCCC---HHHHHHHHHHHHHhcCCCC-CceEEEEe---EcCCCC-CCCCCc
Confidence              11124567666655542 11   0   1211   2335667888999888632 23322221   343211 112332


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCC--CCCCCCc--cHHHHHHHHHHHhc
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~p--g~g~~~a--sG~~aA~~i~~~~~  522 (523)
                       .. ..+.+....++       ..++|++||||||+++.+  .+.+.||  ||.+||++|++.++
T Consensus       431 -~~-~~~g~~~~~~~-------~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~  486 (495)
T 2vvm_A          431 -FF-SRPGMVSECLQ-------GLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELG  486 (495)
T ss_dssp             -CC-CCTTHHHHHHH-------HHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             -cC-cCCCcchhhHH-------HHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhc
Confidence             10 11111100112       235578999999999853  2345677  99999999999874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.95  E-value=3.5e-29  Score=261.07  Aligned_cols=422  Identities=16%  Similarity=0.164  Sum_probs=241.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+|||+++++||+++++. .+|+.+|.|++++....+   .+++++|+... +.+.. .. 
T Consensus        20 G~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~-~~~~~-~~-   95 (504)
T 1sez_A           20 GAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLGLREK-QQFPL-SQ-   95 (504)
T ss_dssp             CCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG-EECCS-SC-
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcHHHHHHHHHcCCccc-ceecc-CC-
Confidence            8999999999999999999999999999999999987 689999999988654333   57788887643 22211 11 


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      ....++.     +|+.+.++.+...+...  .+.. ...       .+..+   ...+....... .             
T Consensus        96 ~~~~~~~-----~g~~~~~p~~~~~~~~~--~~~~-~~~-------~~~~~---~~~~~~~~~~~-~-------------  143 (504)
T 1sez_A           96 NKRYIAR-----NGTPVLLPSNPIDLIKS--NFLS-TGS-------KLQML---LEPILWKNKKL-S-------------  143 (504)
T ss_dssp             CCEEEES-----SSSEEECCSSHHHHHHS--SSSC-HHH-------HHHHH---THHHHC--------------------
T ss_pred             CceEEEE-----CCeEEECCCCHHHHhcc--ccCC-HHH-------HHHHh---HhhhccCcccc-c-------------
Confidence            1111112     26666666654332210  1110 000       01001   11111100000 0             


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh--ccCCCCCCCcchHHHH--HHHH-----------h-hccc-----
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL--IGAMVSPHSPSTSYVL--LHHV-----------M-GGAE-----  216 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~-----------~-~~~~-----  216 (523)
                        . ......|+.+|+.+++.++.++.++.....  ++  ..|.+.++...+  ++.+           + ....     
T Consensus       144 --~-~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  218 (504)
T 1sez_A          144 --Q-VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCG--GDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK  218 (504)
T ss_dssp             -------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHS--CCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC-----
T ss_pred             --c-cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccC--CChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence              0 001235888888888877777666653321  22  244444332211  1110           0 0000     


Q ss_pred             ------------CCCCceeecCCCHHHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCe-----EEEE-e--CC---e
Q psy893          217 ------------GVKGAWAYPEGGMGAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRA-----SGVV-T--NG---L  272 (523)
Q Consensus       217 ------------~~~g~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~-----~~v~-~--~g---~  272 (523)
                                  ...+.+ +++||++.|+++|++.+   + ++|++|++|++|..++ ++.     +.|+ .  +|   +
T Consensus       219 ~~~~~~~~~~~~~~~~~~-~~~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~-~~~~~~~~~~v~~~~~~g~~~~  293 (504)
T 1sez_A          219 KQGPPKTSANKKRQRGSF-SFLGGMQTLTDAICKDL---REDELRLNSRVLELSCSC-TEDSAIDSWSIISASPHKRQSE  293 (504)
T ss_dssp             -----CCCSCCSTTCSCB-EETTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEEC-SSSSSSCEEEEEEBCSSSSCBC
T ss_pred             cccccchhhccccCCceE-eeCcHHHHHHHHHHhhc---ccceEEcCCeEEEEEecC-CCCcccceEEEEEcCCCCccce
Confidence                        012344 78999999999999854   4 7899999999999877 541     4455 3  45   5


Q ss_pred             EEEcCEEEEcCChHHHHHhhCCC---CCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEe
Q psy893          273 EIKAKYVLSNTTAKCTLLDLIPK---GNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHL  349 (523)
Q Consensus       273 ~~~ad~vI~a~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  349 (523)
                      +++||+||+|+|+..+ .+++.+   ..+++..   +.++.+. ++.+|++.++++. |.        .+...+  .+++
T Consensus       294 ~~~ad~VI~a~p~~~l-~~ll~~~~~~~~~~~~---l~~~~~~-~~~~v~l~~~~~~-~~--------~~~~~~--~~l~  357 (504)
T 1sez_A          294 EESFDAVIMTAPLCDV-KSMKIAKRGNPFLLNF---IPEVDYV-PLSVVITTFKREN-VK--------YPLEGF--GVLV  357 (504)
T ss_dssp             CCEESEEEECSCHHHH-HTSEEESSSSBCCCTT---SCCCCEE-EEEEEEEEEEGGG-BS--------SCCCSS--EEEC
T ss_pred             eEECCEEEECCCHHHH-HHHhhcccCCcccHHH---HhcCCCC-ceEEEEEEEchhh-cC--------CCCCce--EEEc
Confidence            7899999999999986 467621   1233322   4555554 7889999998653 21        112223  4544


Q ss_pred             CCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy893          350 NCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIE  429 (523)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~  429 (523)
                       .+. +.        ..|    .+...+.++|..+|..+|+|+.+++.++. .+.  +  ..|....++++.+.+++.|+
T Consensus       358 -~~~-~~--------~~g----~~~~~~~~~s~~~~~~~p~g~~~l~~~~~-g~~--~--~~~~~~~~ee~~~~v~~~L~  418 (504)
T 1sez_A          358 -PSK-EQ--------QHG----LKTLGTLFSSMMFPDRAPNNVYLYTTFVG-GSR--N--RELAKASRTELKEIVTSDLK  418 (504)
T ss_dssp             -CGG-GG--------GGT----CCSSEEEEHHHHCGGGSCTTEEEEEEEEE-STT--C--GGGTTCCHHHHHHHHHHHHH
T ss_pred             -CCC-CC--------CCC----CccceEEeeccccCCcCCCCCEEEEEEeC-CCC--c--ccccCCCHHHHHHHHHHHHH
Confidence             221 10        001    12223344455677778999887766653 111  1  13444456889999999999


Q ss_pred             HhCCCCCCCeEEeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc-
Q psy893          430 QYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA-  508 (523)
Q Consensus       430 ~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a-  508 (523)
                      +++|.-. .++...+.   .|.+-  .+...+.+.. ....+   +        ...++++|||+||++++ |.|+++| 
T Consensus       419 ~~~g~~~-~p~~~~~~---~w~~~--~p~~~~g~~~-~~~~~---~--------~~~~~~~~l~~aG~~~~-g~~v~gai  479 (504)
T 1sez_A          419 QLLGAEG-EPTYVNHL---YWSKA--FPLYGHNYDS-VLDAI---D--------KMEKNLPGLFYAGNHRG-GLSVGKAL  479 (504)
T ss_dssp             HHHCBCS-CCSSEEEE---EEEEE--EECCCTTHHH-HHHHH---H--------HHHHHSTTEEECCSSSS-CSSHHHHH
T ss_pred             HHhCCCC-CCeEEEEe---ECCCC--CCccCcCHHH-HHHHH---H--------HHHHhCCCEEEEeecCC-CCCHHHHH
Confidence            9987522 22111111   12111  0111111100 01110   0        23457899999999985 6778887 


Q ss_pred             -cHHHHHHHHHHHhc
Q psy893          509 -PGYIAAQMVNRLMR  522 (523)
Q Consensus       509 -sG~~aA~~i~~~~~  522 (523)
                       ||++||++|+++++
T Consensus       480 ~sG~~aA~~il~~l~  494 (504)
T 1sez_A          480 SSGCNAADLVISYLE  494 (504)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHh
Confidence             99999999999874

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.95  E-value=5.7e-27  Score=242.23  Aligned_cols=423  Identities=11%  Similarity=0.104  Sum_probs=231.9

Q ss_pred             CCChhHHHHHHHHHHcC------CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceE
Q psy893            1 EAGHNGLVSAAYLARAG------LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKL   71 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~   71 (523)
                      |||++||+||++|+++|      ++|+|||+++++||++++.. .+|+.+|.|++++....+   .+++++|++.. +. 
T Consensus        12 GaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~-   88 (470)
T 3i6d_A           12 GGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKKSAPQLVKDLGLEHL-LV-   88 (470)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEEC-CTTCCEESSCCCEETTCTHHHHHHHHTTCCTT-EE-
T ss_pred             CCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEec-cCCEEeccChhhhhhCCHHHHHHHHHcCCcce-ee-
Confidence            89999999999999999      99999999999999999987 689999999877544444   56778877643 21 


Q ss_pred             eecCCCCcccCCCCcccCCCCceeecCCHH-HHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHH
Q psy893           72 LTRDPRSYTPLSPDKWTNKAKSLTLGLDPQ-KNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYN  150 (523)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (523)
                       ..... ...++.+     +....++.+.. .....+..+...      .+.....++.... ..+......        
T Consensus        89 -~~~~~-~~~~~~~-----g~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~--------  146 (470)
T 3i6d_A           89 -NNATG-QSYVLVN-----RTLHPMPKGAVMGIPTKIAPFVST------GLFSLSGKARAAM-DFILPASKT--------  146 (470)
T ss_dssp             -ECCCC-CEEEECS-----SCEEECCC---------------------------CCSHHHHH-HHHSCCCSS--------
T ss_pred             -cCCCC-ccEEEEC-----CEEEECCCCcccCCcCchHHhhcc------CcCCHHHHHHHhc-CcccCCCCC--------
Confidence             11010 0111111     33333332210 000000000000      0000000000000 000000000        


Q ss_pred             HHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHH---------Hhhcc------
Q psy893          151 LFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHH---------VMGGA------  215 (523)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------  215 (523)
                                   ....++.+++.+.+..+..+.++...........+.+.+....+...         .....      
T Consensus       147 -------------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (470)
T 3i6d_A          147 -------------KDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQ  213 (470)
T ss_dssp             -------------SSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC------------------
T ss_pred             -------------CCCcCHHHHHHHhcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccc
Confidence                         01246677777766655555444332210001233333222111000         00000      


Q ss_pred             -------cCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          216 -------EGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       216 -------~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                             ....+.+.+++||++.|++.|++.+.+  ++|+++++|++|..++ +++ .|+ .+|++++||+||+|+|++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          214 GSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSG-SCY-SLELDNGVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             -------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEECS-SSE-EEEESSSCEEEESEEEECSCHHH
T ss_pred             cccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEcC-CeE-EEEECCCCEEECCEEEECCCHHH
Confidence                   000123447899999999999997754  7999999999999987 654 476 7888899999999999998


Q ss_pred             HHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcC
Q psy893          288 TLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQG  367 (523)
Q Consensus       288 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g  367 (523)
                      + .+|+.+..    ..+.++++.+. ++.++++.++++. |.        .+.. .. .+.+ ..+              
T Consensus       290 ~-~~l~~~~~----~~~~~~~~~~~-~~~~v~l~~~~~~-~~--------~~~~-~~-g~l~-~~~--------------  337 (470)
T 3i6d_A          290 A-AGMLSELP----AISHLKNMHST-SVANVALGFPEGS-VQ--------MEHE-GT-GFVI-SRN--------------  337 (470)
T ss_dssp             H-HHHTTTST----THHHHHTCEEE-EEEEEEEEESSTT-CC--------CSSC-SS-EEEE-CST--------------
T ss_pred             H-HHHcCCch----hhHHHhcCCCC-ceEEEEEEECchh-cC--------CCCC-Ce-EEEc-cCC--------------
Confidence            6 57776532    35677777765 7889999998753 21        1111 11 2223 221              


Q ss_pred             CCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecCh
Q psy893          368 IPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTP  447 (523)
Q Consensus       368 ~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP  447 (523)
                        ...+...+++.|...+..+|+|+.++.+++. .+.    ...+.+...+++.+.+++.|++++|... .++...+.  
T Consensus       338 --~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~-~~~----~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~p~~~~~~--  407 (470)
T 3i6d_A          338 --SDFAITACTWTNKKWPHAAPEGKTLLRAYVG-KAG----DESIVDLSDNDIINIVLEDLKKVMNING-EPEMTCVT--  407 (470)
T ss_dssp             --TCCSEEEEEEHHHHCGGGSCTTCEEEEEEEC-CSS----CCGGGTSCHHHHHHHHHHHHGGGSCCCS-CCSEEEEE--
T ss_pred             --CCCCceEEEEEcCcCCCcCCCCCEEEEEEEC-CCC----CccccCCCHHHHHHHHHHHHHHHhCCCC-CceEEEEE--
Confidence              0123334444444456668888877766642 221    1123333568899999999999997543 22211111  


Q ss_pred             hhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          448 PDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       448 ~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                       .|..-.  +.   |...+ ..+....++       ...++++|||+||+++ .|.|+++|  ||+.||++|++++-
T Consensus       408 -~w~~a~--p~---~~~g~-~~~~~~~~~-------~l~~~~~~l~~aG~~~-~g~gv~~a~~sG~~aA~~i~~~l~  469 (470)
T 3i6d_A          408 -RWHESM--PQ---YHVGH-KQRIKELRE-------ALASAYPGVYMTGASF-EGVGIPDCIDQGKAAVSDALTYLF  469 (470)
T ss_dssp             -EEEEEE--EE---CBTTH-HHHHHHHHH-------HHHHHSTTEEECSTTT-SCCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             -EcCCcc--CC---CCCCH-HHHHHHHHH-------HHHhhCCCEEEEeecC-CCCCHHHHHHHHHHHHHHHHHHhh
Confidence             121100  00   10000 001101111       1234678999999997 46788887  99999999998873

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.94  E-value=5.8e-27  Score=238.54  Aligned_cols=322  Identities=11%  Similarity=0.114  Sum_probs=205.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeec-cc-------------------CCceeccchhhhhhhhh--hh
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE-II-------------------PGFQFSRASYLLSLLRP--HI   58 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~-~~-------------------~G~~~d~g~~~~~~~~~--~~   58 (523)
                      |||++||+||++|+++|++|+|+|+++++||+++|++ ..                   .+|.+|.|+.++....+  .+
T Consensus        13 G~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~~~l~~l   92 (433)
T 1d5t_A           13 GTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKM   92 (433)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETTSHHHHH
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeeccchHHHH
Confidence            8999999999999999999999999999999999986 21                   34666777665432222  57


Q ss_pred             hccccccccCceEeecCCCCcccCCCCcccCCCCceeecCCH-HHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893           59 YKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDP-QKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD  137 (523)
Q Consensus        59 ~~~lgl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (523)
                      ++++|+.++ +++...++. +. + .+     |+.+.++.+. +.+...+..++  +...+.+|+..+.++..       
T Consensus        93 l~~lgl~~~-l~~~~~~~~-~~-~-~~-----g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~-------  154 (433)
T 1d5t_A           93 LLYTEVTRY-LDFKVVEGS-FV-Y-KG-----GKIYKVPSTETEALASNLMGMF--EKRRFRKFLVFVANFDE-------  154 (433)
T ss_dssp             HHHHTGGGG-CCEEECCEE-EE-E-ET-----TEEEECCCSHHHHHHCSSSCHH--HHHHHHHHHHHHHHCCT-------
T ss_pred             HHHcCCccc-eEEEEeCce-EE-e-eC-----CEEEECCCCHHHHhhCcccChh--hHHHHHHHHHHHHhhcc-------
Confidence            888888766 677665532 22 2 22     7777777774 43333222221  34445555544433110       


Q ss_pred             cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchH---HHHHHHHhhc
Q psy893          138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTS---YVLLHHVMGG  214 (523)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  214 (523)
                      ..+   ..      .. .      .+....|+.+++++++.++.++.++...........+...++.   +.+..+....
T Consensus       155 ~~p---~~------~~-~------~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~  218 (433)
T 1d5t_A          155 NDP---KT------FE-G------VDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESL  218 (433)
T ss_dssp             TCG---GG------GT-T------CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSC
T ss_pred             cCc---hh------cc-c------cccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHH
Confidence            000   00      00 0      0113468899999999999999988654221111223222332   2232332221


Q ss_pred             ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .....+.+.+|+||++.++++|++.+++.|++|+++++|++|..++ +++++|+.+|+++.||+||+|++++.  ..+ .
T Consensus       219 ~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~v~~v~~~g~~~~ad~VV~a~~~~~--~~~-~  294 (433)
T 1d5t_A          219 ARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMEN-GKVVGVKSEGEVARCKQLICDPSYVP--DRV-R  294 (433)
T ss_dssp             CSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEET-TEEEEEEETTEEEECSEEEECGGGCG--GGE-E
T ss_pred             HhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeC-CEEEEEEECCeEEECCEEEECCCCCc--ccc-c
Confidence            1111233448999999999999999999999999999999999987 88777777888999999999999885  222 1


Q ss_pred             CCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q psy893          295 KGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPM  374 (523)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  374 (523)
                                   ++....+.++  + ++++..++.        ...+|  ++++ ..              +.++++|+
T Consensus       295 -------------~~~~~~~~~~--i-l~~~~~~~~--------~~~~~--~i~~-~~--------------~~~~~~~~  333 (433)
T 1d5t_A          295 -------------KAGQVIRIIC--I-LSHPIKNTN--------DANSC--QIII-PQ--------------NQVNRKSD  333 (433)
T ss_dssp             -------------EEEEEEEEEE--E-ESSCCTTST--------TCSSE--EEEE-CG--------------GGTTCSSC
T ss_pred             -------------ccCcceeEEE--E-EcCcccccC--------CCceE--EEEe-Cc--------------cccCCCCC
Confidence                         1111223332  2 565432221        01244  6776 22              23456799


Q ss_pred             EEEEcCCCCCCCCCCCCceEEEEEecccc
Q psy893          375 IEMVLPSSLDNTLSPPGHHVCLLFTQFTP  403 (523)
Q Consensus       375 ~~v~~~s~~d~~~ap~G~~~i~~~~~~~p  403 (523)
                      ++++.+| .||++||+|+++++++++ +|
T Consensus       334 ~~v~~~s-~d~~~aP~G~~~~~~~~~-~p  360 (433)
T 1d5t_A          334 IYVCMIS-YAHNVAAQGKYIAIASTT-VE  360 (433)
T ss_dssp             EEEEEEE-GGGTSSCTTCEEEEEEEE-CC
T ss_pred             EEEEEEC-CCCcccCCCCEEEEEEEe-cC
Confidence            9999999 999999999998887764 44

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=245.58  Aligned_cols=422  Identities=16%  Similarity=0.098  Sum_probs=230.6

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCCCcceeeecccCCceeccchhhhhhh---h---hhhhccccccccCceEe
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLL---R---PHIYKDLELKKHGLKLL   72 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~---~---~~~~~~lgl~~~g~~~~   72 (523)
                      |||++||+||++|+++|+  +|+|||+++++||++++....+|+.+|.|++++...   .   ..+++++|++.. +...
T Consensus         9 GaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~-~~~~   87 (477)
T 3nks_A            9 GGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSE-VLPV   87 (477)
T ss_dssp             CCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGGG-EEEE
T ss_pred             CCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcce-eeec
Confidence            899999999999999999  999999999999999987634699999998875322   1   267888887644 2211


Q ss_pred             ec-CCCCc-ccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHH
Q psy893           73 TR-DPRSY-TPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYN  150 (523)
Q Consensus        73 ~~-~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (523)
                      .. .+... ...+.     +++.+.++.+.......+..+....      +..       .+..+..... .        
T Consensus        88 ~~~~~~~~~~~~~~-----~g~~~~~p~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~-~--------  140 (477)
T 3nks_A           88 RGDHPAAQNRFLYV-----GGALHALPTGLRGLLRPSPPFSKPL------FWA-------GLRELTKPRG-K--------  140 (477)
T ss_dssp             CTTSHHHHCEEEEE-----TTEEEECCCSSCC---CCTTSCSCS------SHH-------HHTTTTSCCC-C--------
T ss_pred             CCCCchhcceEEEE-----CCEEEECCCChhhcccccchhhhHH------HHH-------HHHhhhcCCC-C--------
Confidence            11 00000 00001     1444444333211111000110000      000       0011111000 0        


Q ss_pred             HHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh--hccCCCCCCCcchHHHH--HHH-----------Hhhc-
Q psy893          151 LFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG--LIGAMVSPHSPSTSYVL--LHH-----------VMGG-  214 (523)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~-----------~~~~-  214 (523)
                                   ....++.+|+.+.+..+....++....  .++  ..+.+.+....+  +..           ++.. 
T Consensus       141 -------------~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~  205 (477)
T 3nks_A          141 -------------EPDETVHSFAQRRLGPEVASLAMDSLCRGVFA--GNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA  205 (477)
T ss_dssp             -------------SSCCBHHHHHHHHHCHHHHHHTHHHHHHHHHS--SCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-
T ss_pred             -------------CCCcCHHHHHHHhhCHHHHHHHHHHHhccccc--CCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence                         011344555555544443333332221  111  233333322211  000           0000 


Q ss_pred             --------------ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEE
Q psy893          215 --------------AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVL  280 (523)
Q Consensus       215 --------------~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI  280 (523)
                                    .....+.+ +++||++.++++|++.+++.|++|++|++|++|..++ ++++.|+.+++++.||+||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~v~~~~~~~~ad~vv  283 (477)
T 3nks_A          206 GRTPQPDSALIRQALAERWSQW-SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQA-EGRWKVSLRDSSLEADHVI  283 (477)
T ss_dssp             ----CCCCHHHHHHHHTTCSEE-EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECG-GGCEEEECSSCEEEESEEE
T ss_pred             ccccCCchhhhhhhcccCccEE-EECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcC-CceEEEEECCeEEEcCEEE
Confidence                          00012344 8999999999999999999999999999999999876 5545566555589999999


Q ss_pred             EcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHH
Q psy893          281 SNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDA  360 (523)
Q Consensus       281 ~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  360 (523)
                      +|++++.+ .+|+++  .++...+.+.++.+. ++.+|++.++++. |   +       ...   .-++....       
T Consensus       284 ~a~p~~~~-~~ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~-~---~-------~~~---~g~l~~~~-------  338 (477)
T 3nks_A          284 SAIPASVL-SELLPA--EAAPLARALSAITAV-SVAVVNLQYQGAH-L---P-------VQG---FGHLVPSS-------  338 (477)
T ss_dssp             ECSCHHHH-HHHSCG--GGHHHHHHHHTCCEE-EEEEEEEEETTCC-C---S-------SCS---SEEECCTT-------
T ss_pred             ECCCHHHH-HHhccc--cCHHHHHHHhcCCCC-cEEEEEEEECCCC-C---C-------CCC---ceEEccCC-------
Confidence            99999985 678764  345677888888775 6788999998642 2   1       111   12221111       


Q ss_pred             HHHhhcCCCCCCCeEEEEcCCCCCCCCC-CCCceEEEEEecccccCC-CCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy893          361 YQDATQGIPSTRPMIEMVLPSSLDNTLS-PPGHHVCLLFTQFTPYKL-AGDRDWTEEDKANYATNVFSSIEQYCPGFTQD  438 (523)
Q Consensus       361 ~~~~~~g~~~~~~~~~v~~~s~~d~~~a-p~G~~~i~~~~~~~p~~~-~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~  438 (523)
                               ...+.+.+.+.|...|.+. |+|+.++++++. ..+.. ..+..| +..++++.+.+++.|+++++ +...
T Consensus       339 ---------~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~g-g~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~g-~~~~  406 (477)
T 3nks_A          339 ---------EDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLG-GSWLQTLEASGC-VLSQELFQQRAQEAAATQLG-LKEM  406 (477)
T ss_dssp             ---------TCSSEEEEECHHHHCGGGSTTTTCEEEEEEEC-HHHHHHHHHSSC-CCCHHHHHHHHHHHHHHHHC-CCSC
T ss_pred             ---------CCCCceEEEEeccccCCCCCCCCceEEEEEEC-CccccccccccC-CCCHHHHHHHHHHHHHHHhC-CCCC
Confidence                     0124445555444444333 447777776653 11100 000011 12458899999999999874 2222


Q ss_pred             eEEeEecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHH
Q psy893          439 IVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQM  516 (523)
Q Consensus       439 i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~  516 (523)
                      .....+.   .|.+  ..++..+.+. ....+.   +.       ......+|||+||+|. .|.|+++|  ||+.||++
T Consensus       407 ~~~~~v~---rw~~--a~p~~~~g~~-~~~~~~---~~-------~l~~~~~~l~l~G~~~-~G~gv~~a~~sg~~aA~~  469 (477)
T 3nks_A          407 PSHCLVH---LHKN--CIPQYTLGHW-QKLESA---RQ-------FLTAHRLPLTLAGASY-EGVAVNDCIESGRQAAVS  469 (477)
T ss_dssp             CSEEEEE---EEEE--EEECCBTTHH-HHHHHH---HH-------HHHHTTCSEEECSTTT-SCCSHHHHHHHHHHHHHH
T ss_pred             CcEEEEE---EcCC--ccCCCCCCHH-HHHHHH---HH-------HHHhcCCCEEEEccCC-CCCcHHHHHHHHHHHHHH
Confidence            2222211   1111  0111111100 000000   00       0011236899999996 78899987  99999999


Q ss_pred             HHHHh
Q psy893          517 VNRLM  521 (523)
Q Consensus       517 i~~~~  521 (523)
                      |+++-
T Consensus       470 il~~~  474 (477)
T 3nks_A          470 VLGTE  474 (477)
T ss_dssp             HHHCC
T ss_pred             HHhcc
Confidence            99753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.93  E-value=1.4e-25  Score=232.92  Aligned_cols=244  Identities=13%  Similarity=0.104  Sum_probs=159.3

Q ss_pred             eeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHHHHHhhCCCCC
Q psy893          222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKCTLLDLIPKGN  297 (523)
Q Consensus       222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~~~~~ll~~~~  297 (523)
                      +.+++||++.|+++|++.+.+  ++|++|++|++|..++ ++++ |+ .+|   ++++||+||+|+|+..+ .+|..  .
T Consensus       231 ~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l-~~l~~--~  303 (489)
T 2jae_A          231 MFTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVS-EGVT-VEYTAGGSKKSITADYAICTIPPHLV-GRLQN--N  303 (489)
T ss_dssp             EEEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEET-TEEE-EEEEETTEEEEEEESEEEECSCHHHH-TTSEE--C
T ss_pred             EEeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcC-CeEE-EEEecCCeEEEEECCEEEECCCHHHH-HhCcc--C
Confidence            348999999999999997743  7899999999999887 6654 65 555   67999999999999974 56654  4


Q ss_pred             CCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEE
Q psy893          298 LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEM  377 (523)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v  377 (523)
                      +++...+.++++.+. ++++|++.++++ .|..       .  ....+.+.. .                   +.|...+
T Consensus       304 l~~~~~~~l~~~~~~-~~~kv~l~~~~~-~w~~-------~--~~~~g~~~~-~-------------------~~~~~~~  352 (489)
T 2jae_A          304 LPGDVLTALKAAKPS-SSGKLGIEYSRR-WWET-------E--DRIYGGASN-T-------------------DKDISQI  352 (489)
T ss_dssp             CCHHHHHHHHTEECC-CEEEEEEEESSC-HHHH-------T--TCCCSCEEE-E-------------------SSTTCEE
T ss_pred             CCHHHHHHHHhCCCc-cceEEEEEeCCC-CccC-------C--CCccccccc-C-------------------CCCceEE
Confidence            788888899999876 789999999864 2310       0  001111211 1                   1245567


Q ss_pred             EcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCCeEEeEecChhhHHHhcCC
Q psy893          378 VLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPG-FTQDIVGYEILTPPDLEKEFGL  456 (523)
Q Consensus       378 ~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tP~~~~~~~~~  456 (523)
                      .++|..++  .|+ ..++..++. .+..    ..|....++++.+.+++.|++++|. +++.++...   +.+|.+.. .
T Consensus       353 ~~~s~~~~--~~~-~~l~~~~~~-g~~~----~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~---~~~W~~~~-~  420 (489)
T 2jae_A          353 MFPYDHYN--SDR-GVVVAYYSS-GKRQ----EAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSF---SGSWRRTK-Y  420 (489)
T ss_dssp             ECCSSSTT--SSC-EEEEEEEEE-THHH----HHHHTSCHHHHHHHHHHHHHHHHCGGGGSSEEEEE---EEEGGGST-T
T ss_pred             EeCCCCCC--CCC-CEEEEEeeC-Cchh----hhhhcCCHHHHHHHHHHHHHHHcCcchhhhccccE---EEEcCCCC-C
Confidence            76765442  233 233323332 1110    1233334688999999999999997 777766543   33576542 2


Q ss_pred             CCCccccCc----ccccccccCCCCCCCCCCCCCCCCCCeEecCCCC-CCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          457 TGGNIFHGA----LSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGA-HPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       457 ~~G~~~g~~----~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~-~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ..|+.....    ..+.+....++       ..++|++||||||+++ ++++++++|  ||.+||++|++.+.
T Consensus       421 ~~G~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~  486 (489)
T 2jae_A          421 SESAWANWAGSGGSHGGAATPEYE-------KLLEPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVA  486 (489)
T ss_dssp             TSCSSCEETTC-------CCHHHH-------HHTSCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhcccccCCCcccchhhHH-------HHhCCCCcEEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHh
Confidence            344432111    00111111111       3356789999999988 577889987  99999999998764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.93  E-value=2.2e-25  Score=230.54  Aligned_cols=417  Identities=15%  Similarity=0.159  Sum_probs=229.7

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++|  ++|+|||+++++||++++.. .+|+.+|.|++++....+   .+++++|++.. +.  ...
T Consensus        11 GaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~-~~--~~~   86 (475)
T 3lov_A           11 GGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIEAIGLGEK-LV--RNN   86 (475)
T ss_dssp             CCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC-STTCCEESSCCCEETTSTHHHHHHHHTTCGGG-EE--ECC
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe-eCCEEEecCchhhhcccHHHHHHHHHcCCcce-Ee--ecC
Confidence            89999999999999999  99999999999999999887 689999999877544333   57778887643 21  110


Q ss_pred             CCCcccCCCCcccCCCCceeecCCH----HHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHH
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDP----QKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNL  151 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (523)
                      .. ...++.     +++...++.+.    ......+.....-..      ...+ .+.+    ++.......        
T Consensus        87 ~~-~~~~~~-----~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~------~~~~-~~~~----~~~~~~~~~--------  141 (475)
T 3lov_A           87 TS-QAFILD-----TGGLHPIPKGAVMGIPTDLDLFRQTTLLTE------EEKQ-EVAD----LLLHPSDSL--------  141 (475)
T ss_dssp             CC-CEEEEE-----TTEEEECCSSEETTEESCHHHHTTCSSSCH------HHHH-HHHH----HHHSCCTTC--------
T ss_pred             CC-ceEEEE-----CCEEEECCCcccccCcCchHHHhhccCCCh------hHHH-HhhC----cccCCcccc--------
Confidence            10 111111     03333322211    000011111000000      0000 1111    111000000        


Q ss_pred             HhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccCCCCCCCcchH--H-HH----------HHHHhhcc--
Q psy893          152 FTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGAMVSPHSPSTS--Y-VL----------LHHVMGGA--  215 (523)
Q Consensus       152 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~--~-~~----------~~~~~~~~--  215 (523)
                         ...      ....++.+|+.+.+..+..+.++..... ... ..+.+.+..  + .+          ...+....  
T Consensus       142 ---~~~------~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~  211 (475)
T 3lov_A          142 ---RIP------EQDIPLGEYLRPRLGDALVEKLIEPLLSGIYA-GNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPL  211 (475)
T ss_dssp             ---CCC------SSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGC-CCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC-
T ss_pred             ---cCC------CCCcCHHHHHHHHhCHHHHHHHHHHHhceeec-CChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhccc
Confidence               000      0123566666666555544444433221 111 223232211  0 01          00000000  


Q ss_pred             ----------cCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          216 ----------EGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       216 ----------~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                                ....+.+.+++||++.+++.|++.+.+  ++|++|++|++|..++ +++ .|+ .+| +++||+||+|+|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~-~~~-~v~~~~g-~~~ad~vV~a~p  286 (475)
T 3lov_A          212 DQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRED-GRY-RLKTDHG-PEYADYVLLTIP  286 (475)
T ss_dssp             -------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEET-TEE-EEECTTC-CEEESEEEECSC
T ss_pred             ccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeC-CEE-EEEECCC-eEECCEEEECCC
Confidence                      001233458999999999999997754  7999999999999887 554 466 677 899999999999


Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHh
Q psy893          285 AKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDA  364 (523)
Q Consensus       285 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  364 (523)
                      ++.+ .+|+++..+     +.++++.+. ++.++++.++++. ..         +.. .. .++. ..+           
T Consensus       287 ~~~~-~~ll~~~~~-----~~~~~~~~~-~~~~v~l~~~~~~-~~---------~~~-g~-g~l~-~~~-----------  335 (475)
T 3lov_A          287 HPQV-VQLLPDAHL-----PELEQLTTH-STATVTMIFDQQQ-SL---------PIE-GT-GFVV-NRR-----------  335 (475)
T ss_dssp             HHHH-HHHCTTSCC-----HHHHTCCEE-EEEEEEEEEECCS-SC---------SSS-SS-EEEE-CTT-----------
T ss_pred             HHHH-HHHcCccCH-----HHHhcCCCC-eEEEEEEEECCcC-CC---------CCC-CE-EEEe-cCC-----------
Confidence            9985 578765432     566777765 7889999998754 21         111 11 2222 221           


Q ss_pred             hcCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEe
Q psy893          365 TQGIPSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEI  444 (523)
Q Consensus       365 ~~g~~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~  444 (523)
                           ...+...+++.+...+...|+ +.++.+++. .+.    ...+.+..++++.+.+++.|+++++.- ...+...+
T Consensus       336 -----~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~-~~~----~~~~~~~~~e~~~~~~~~~L~~~~g~~-~~p~~~~v  403 (475)
T 3lov_A          336 -----APYSITACTAIDQKWNHSAPD-HTVLRAFVG-RPG----NDHLVHESDEVLQQAVLQDLEKICGRT-LEPKQVII  403 (475)
T ss_dssp             -----SSCSEEEEEEHHHHCTTTCTT-EEEEEEEEC-BTT----BCGGGGSCHHHHHHHHHHHHHHHHSSC-CCCSEEEE
T ss_pred             -----CCCceEEEEEEcccCCCCCCC-cEEEEEEeC-CCC----CCcccCCCHHHHHHHHHHHHHHHhCCC-CCCeEEEE
Confidence                 012344455555556666777 665655542 111    112333456889999999999998642 22222211


Q ss_pred             cChhhHHHhc-CCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHh
Q psy893          445 LTPPDLEKEF-GLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       445 ~tP~~~~~~~-~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~  521 (523)
                      .   .|..-. ...-|..    ..+.   ..++       ...++++|||+||+++. |.|+++|  ||+.||++|++.+
T Consensus       404 ~---~w~~a~p~~~~g~~----~~~~---~~~~-------~l~~~~~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~~~l  465 (475)
T 3lov_A          404 S---RLMDGLPAYTVGHA----DRIQ---RVRE-------EVLAQYPGIYLAGLAYD-GVGLPDCVASAKTMIESIELEQ  465 (475)
T ss_dssp             E---EEEEEEECCCTTHH----HHHH---HHHH-------HHHHHSTTEEECSTTTS-CSSHHHHHHHHHHHHHHHHHTC
T ss_pred             E---EcccCCCCCCCChH----HHHH---HHHH-------HHHhhCCCEEEEccCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            1   122100 0111110    0011   0111       22346789999999985 5678887  9999999999977


Q ss_pred             c
Q psy893          522 R  522 (523)
Q Consensus       522 ~  522 (523)
                      +
T Consensus       466 ~  466 (475)
T 3lov_A          466 S  466 (475)
T ss_dssp             -
T ss_pred             h
Confidence            5

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.93  E-value=2.1e-25  Score=230.38  Aligned_cols=243  Identities=15%  Similarity=0.150  Sum_probs=155.2

Q ss_pred             cCCCHHHHHHHHHHHHHHC--------CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC-
Q psy893          225 PEGGMGAVSQALARSAQAS--------GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP-  294 (523)
Q Consensus       225 ~~gG~~~l~~~l~~~~~~~--------G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~-  294 (523)
                      ++||++.++++|++.+.+.        |++|+++++|++|..++ ++++ |+ .+|++++||+||+|+++..+. +++. 
T Consensus       201 ~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~vI~a~~~~~l~-~~~~~  277 (472)
T 1b37_A          201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP-GGVT-VKTEDNSVYSADYVMVSASLGVLQ-SDLIQ  277 (472)
T ss_dssp             CTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS-SCEE-EEETTSCEEEESEEEECSCHHHHH-TTSSE
T ss_pred             cCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcC-CcEE-EEECCCCEEEcCEEEEecCHHHhc-cCCee
Confidence            4799999999999988765        78999999999999987 6665 77 788889999999999999864 4432 


Q ss_pred             -CCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCC
Q psy893          295 -KGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRP  373 (523)
Q Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~  373 (523)
                       .+.+++...+.++++.+. ++.+|++.++++ .|.        .. ..+. .+.. .+..           .+.    .
T Consensus       278 ~~p~Lp~~~~~ai~~~~~~-~~~kv~l~~~~~-~w~--------~~-~~~~-~~~~-~~~~-----------~~~----~  329 (472)
T 1b37_A          278 FKPKLPTWKVRAIYQFDMA-VYTKIFLKFPRK-FWP--------EG-KGRE-FFLY-ASSR-----------RGY----Y  329 (472)
T ss_dssp             EESCCCHHHHHHHHHSEEE-CEEEEEEECSSC-CSC--------CS-TTCS-EEEE-CCSS-----------TTS----S
T ss_pred             ECCCCCHHHHHHHHhcCCc-ceeEEEEECCCc-CCC--------CC-CCcc-eEEe-cccC-----------Ccc----c
Confidence             356888888899988765 678999999874 341        00 1111 1222 1110           011    1


Q ss_pred             eEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHH
Q psy893          374 MIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEK  452 (523)
Q Consensus       374 ~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~  452 (523)
                      .++..    .|+. .| |.+++.+++. .+.    .+.|....++++.+.+++.|++++|+.. ...+...+.+   |..
T Consensus       330 ~~~~~----~~~~-~p-~~~~l~~~~~-~~~----a~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~---W~~  395 (472)
T 1b37_A          330 GVWQE----FEKQ-YP-DANVLLVTVT-DEE----SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPR---WWS  395 (472)
T ss_dssp             CEEEE----CTTT-ST-TCCEEEEEEE-HHH----HHHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCC---TTT
T ss_pred             eeeec----ccCC-CC-CCCEEEEEec-hHH----HHHHHhCCHHHHHHHHHHHHHHHcCCCCCCCCceEEecc---cCC
Confidence            22322    2332 34 4555555532 111    0113223478999999999999999864 2233333443   332


Q ss_pred             hcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCC--CCCCCCc--cHHHHHHHHHHHhc
Q psy893          453 EFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       453 ~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~p--g~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      . ....|+.....  +.+....++       ..++|++||||||+++++  ++++.||  ||.+||++|++.++
T Consensus       396 ~-~~~~G~~~~~~--~g~~~~~~~-------~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~  459 (472)
T 1b37_A          396 D-RFYKGTFSNWP--VGVNRYEYD-------QLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ  459 (472)
T ss_dssp             C-TTTSSSEEECB--TTCCHHHHH-------HHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCcccCCCC--CCCChhHHH-------HHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1 22345432111  111100112       457789999999999986  4577888  99999999998774

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.92  E-value=1.3e-25  Score=234.62  Aligned_cols=277  Identities=16%  Similarity=0.205  Sum_probs=152.3

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++ |++|+||||++++||+++|+...+||.||.|+|++....+   .++++++....  ++...++
T Consensus        17 GaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~--~~~~~~~   94 (513)
T 4gde_A           17 GAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKED--DWYTHQR   94 (513)
T ss_dssp             CCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGG--GEEEEEC
T ss_pred             CCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccc--eeEEecC
Confidence            9999999999999985 9999999999999999998654789999999998755455   34555543322  2332222


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhH-HH-hhhhcCCCChhhHHHHHHHhc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNL-LD-PLFDIAPHDFGNLLMYNLFTR  154 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  154 (523)
                      ..+ .+.+      |+.+.++-.     ..+..+.....      ......+... .. ......+.++.++...     
T Consensus        95 ~~~-i~~~------g~~~~~p~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-----  151 (513)
T 4gde_A           95 ISY-VRCQ------GQWVPYPFQ-----NNISMLPKEEQ------VKCIDGMIDAALEARVANTKPKTFDEWIVR-----  151 (513)
T ss_dssp             CEE-EEET------TEEEESSGG-----GGGGGSCHHHH------HHHHHHHHHHHHHHHTCCSCCCSHHHHHHH-----
T ss_pred             ceE-EEEC------CeEeecchh-----hhhhhcchhhH------HHHHHHHHHHHHhhhcccccccCHHHHHHH-----
Confidence            111 1112      554443311     11111111111      0111111110 00 1111112222222111     


Q ss_pred             cccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-cc-CCCCC--CCcchHHHHHHHHhhccc----CCCCceeecC
Q psy893          155 RGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IG-AMVSP--HSPSTSYVLLHHVMGGAE----GVKGAWAYPE  226 (523)
Q Consensus       155 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~g~~~~~~  226 (523)
                                   .+.+.+.+.+-.+....+...... +. ....+  ..................    .....+..++
T Consensus       152 -------------~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (513)
T 4gde_A          152 -------------MMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPAR  218 (513)
T ss_dssp             -------------HHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESS
T ss_pred             -------------hhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeeccc
Confidence                         111112222222222222211110 00 00000  011111111111111110    1111222458


Q ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHH
Q psy893          227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQA  305 (523)
Q Consensus       227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~  305 (523)
                      ||++.++++|++.+++.|++|++|++|++|..++ ++   |+ .+|+++.||+||+|+|+..+ .+++.+    +.....
T Consensus       219 gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~~---v~~~~G~~~~ad~vI~t~P~~~l-~~~l~~----~~~~~~  289 (513)
T 4gde_A          219 GGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANN-KT---VTLQDGTTIGYKKLVSTMAVDFL-AEAMND----QELVGL  289 (513)
T ss_dssp             SHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTT-TE---EEETTSCEEEEEEEEECSCHHHH-HHHTTC----HHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCeeeecceEEEEEEccC-CE---EEEcCCCEEECCEEEECCCHHHH-HHhcCc----hhhHhh
Confidence            9999999999999999999999999999999876 43   45 88999999999999999986 467653    445666


Q ss_pred             HhcCCCCCCeEEEEEecCCC
Q psy893          306 VQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       306 ~~~~~~~~~~~~v~~~~~~~  325 (523)
                      ...+.|. ++.+|.++++..
T Consensus       290 ~~~l~y~-~~~~v~l~~~~~  308 (513)
T 4gde_A          290 TKQLFYS-STHVIGVGVRGS  308 (513)
T ss_dssp             HTTCCEE-EEEEEEEEEESS
T ss_pred             hhcccCC-ceEEEEEEEecc
Confidence            7777775 778888888754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.91  E-value=1.2e-23  Score=218.95  Aligned_cols=424  Identities=18%  Similarity=0.122  Sum_probs=224.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecc-cCCceeccchhhhhhhhh---hhhccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEI-IPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~-~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||+.|+++|++|+|||+++++||++.+... .+|+.+|.|++++....+   .+++++|+...  .+...+.
T Consensus        40 GaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~  117 (498)
T 2iid_A           40 GAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN--EFSQEND  117 (498)
T ss_dssp             CCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE--EECSCCT
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce--eecccCC
Confidence            89999999999999999999999999999999987652 468899999877543322   45566665311  1111111


Q ss_pred             CCcccCCCCcccCCCCceeec---CCHHHHHHHHHccChhhH-HHHHH-HHHHHHHHHhHHHhhhhcCCCChhhHHHHHH
Q psy893           77 RSYTPLSPDKWTNKAKSLTLG---LDPQKNYEQIARFSVKDA-QNFEK-YDHHIEEITNLLDPLFDIAPHDFGNLLMYNL  151 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (523)
                      ..+... .      +......   .+...+   ...+.+.+. ..... +...+.++...+..+      ...       
T Consensus       118 ~~~~~~-~------g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------  174 (498)
T 2iid_A          118 NAWYFI-K------NIRKKVGEVKKDPGLL---KYPVKPSEAGKSAGQLYEESLGKVVEELKRT------NCS-------  174 (498)
T ss_dssp             TSEEEE-T------TEEEEHHHHHHCGGGG---CCCCCGGGTTCCHHHHHHHHTHHHHHHHHHS------CHH-------
T ss_pred             ccEEEe-C------CeeecccccccCcccc---ccCCCccccCCCHHHHHHHHHHHHHHHHhhc------cHH-------
Confidence            101000 0      1111000   000000   000111100 00000 111111111111000      000       


Q ss_pred             HhccccHHHHHHHHhhcHHHHHHhhcC-ChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhhcccCCCCceeecCCCHH
Q psy893          152 FTRRGEMKDVYSLLTCSAFSILNDWFE-SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMG  230 (523)
Q Consensus       152 ~~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~  230 (523)
                             .....+...++.+++.+... ++.....+........ .  ......-.+.....  .. ....+.+++||++
T Consensus       175 -------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~~-~~~~~~~~~gG~~  241 (498)
T 2iid_A          175 -------YILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDS-G--YYVSFIESLKHDDI--FA-YEKRFDEIVDGMD  241 (498)
T ss_dssp             -------HHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGG-G--TTSBHHHHHHHHHH--HT-TCCCEEEETTCTT
T ss_pred             -------HHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCccc-c--hhHHHHHHHHHHhc--cc-cCcceEEeCCcHH
Confidence                   00111223466677766431 2333222221110000 0  00111111111100  11 1223348899999


Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe----EEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL----EIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQA  305 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~----~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~  305 (523)
                      .|+++|++.+.+   +|++|++|++|..++ +++ .|+ .+|+    +++||+||+|+|+..+ .++...+.+|+...+.
T Consensus       242 ~l~~~l~~~l~~---~i~~~~~V~~I~~~~-~~v-~v~~~~~~~~~~~~~ad~vI~t~p~~~~-~~i~f~p~Lp~~~~~a  315 (498)
T 2iid_A          242 KLPTAMYRDIQD---KVHFNAQVIKIQQND-QKV-TVVYETLSKETPSVTADYVIVCTTSRAV-RLIKFNPPLLPKKAHA  315 (498)
T ss_dssp             HHHHHHHHHTGG---GEESSCEEEEEEECS-SCE-EEEEECSSSCCCEEEESEEEECSCHHHH-TTSEEESCCCHHHHHH
T ss_pred             HHHHHHHHhccc---ccccCCEEEEEEECC-CeE-EEEEecCCcccceEEeCEEEECCChHHH-hheecCCCCCHHHHHH
Confidence            999999997754   799999999999987 665 465 5554    5899999999999974 5654344589888999


Q ss_pred             HhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCC
Q psy893          306 VQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLDN  385 (523)
Q Consensus       306 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d~  385 (523)
                      ++++.+. ++.+|++.++++ .|..          ....+...+ .+                   .|..++++++.   
T Consensus       316 i~~l~~~-~~~kv~l~~~~~-~w~~----------~~~~~~~~~-~~-------------------~~~~~~~~~s~---  360 (498)
T 2iid_A          316 LRSVHYR-SGTKIFLTCTTK-FWED----------DGIHGGKST-TD-------------------LPSRFIYYPNH---  360 (498)
T ss_dssp             HHHCCEE-CEEEEEEEESSC-GGGG----------GTCCSSEEE-ES-------------------STTCEEECCSS---
T ss_pred             HHhCCCc-ceeEEEEEeCCC-CccC----------CCccCCccc-CC-------------------CCcceEEECCC---
Confidence            9999886 588999999874 3310          000011111 11                   13334555542   


Q ss_pred             CCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCe----EEeEecChhhHHHhcCCCCCcc
Q psy893          386 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDI----VGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       386 ~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i----~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                       ..|+|..++..++. .+..    ..|.....+++.+.+++.|+++++-..+.+    ....+   ..|.+. ....|+.
T Consensus       361 -~~p~g~~~L~~~~~-g~~a----~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~---~~W~~~-p~~~G~~  430 (498)
T 2iid_A          361 -NFTNGVGVIIAYGI-GDDA----NFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVI---QKWSLD-KYAMGGI  430 (498)
T ss_dssp             -CCTTSCEEEEEEEE-HHHH----HTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEE---EEGGGC-TTTCSSE
T ss_pred             -CCCCCCcEEEEEeC-CccH----hhhhcCCHHHHHHHHHHHHHHHcCCChhhhhhhcCccEE---EecCCC-CCCCcee
Confidence             25777777665542 2110    124333557899999999999886221111    11111   234431 1233442


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCC-CCCCCCc--cHHHHHHHHHHHhc
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHP-GGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~p-g~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ...  .+.+....++       ..+++++||||||+++.. .+++.||  ||.+||++|++.++
T Consensus       431 ~~~--~~~~~~~~~~-------~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~  485 (498)
T 2iid_A          431 TTF--TPYQFQHFSD-------PLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASE  485 (498)
T ss_dssp             ECC--CTTHHHHHHH-------HHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eec--CCcchHHHHH-------HHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhc
Confidence            111  1112111112       335578999999999843 3456787  99999999998763

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.91  E-value=2.3e-23  Score=217.37  Aligned_cols=263  Identities=18%  Similarity=0.172  Sum_probs=149.0

Q ss_pred             CCChhHHHHHHHHHHcC-CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhh-h---hhhccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAG-LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLR-P---HIYKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~-~---~~~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||+||++|+++| ++|+|||+++++||+++|....+|+.+|.|++++.... .   ....++++......+.   
T Consensus        15 GaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---   91 (516)
T 1rsg_A           15 GAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFV---   91 (516)
T ss_dssp             CCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHCCCCEE---
T ss_pred             CCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCcceeEE---
Confidence            89999999999999999 99999999999999999976337999999998865432 2   2233444321101111   


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                             +.+     +..+.+..+...       ........+.++.+.+.++.+..   +.... .             
T Consensus        92 -------~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-------------  135 (516)
T 1rsg_A           92 -------FDD-----DNFIYIDEERGR-------VDHDKELLLEIVDNEMSKFAELE---FHQHL-G-------------  135 (516)
T ss_dssp             -------CCC-----CCCEEEETTTEE-------CTTCTTTCHHHHHHHHHHHHHHH---C-------------------
T ss_pred             -------ECC-----CCEEEEcCCCcc-------ccccHHHHHHHHHHHHHHHHHHH---hhhcc-C-------------
Confidence                   111     333322222110       00001111222222222222111   00000 0             


Q ss_pred             ccHHHHHHHHhhcHHHHHHhhcC------Ch----HHHHHHhhhhh-ccCCCCCCCcchHHHHHHHHhhcccCCCCceee
Q psy893          156 GEMKDVYSLLTCSAFSILNDWFE------SE----PLKATLLTDGL-IGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAY  224 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~~~------~~----~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  224 (523)
                              ....|+.+++.+++.      .+    .+..++..... .+  ..+...++.+.+       .......+ +
T Consensus       136 --------~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g--~~~~~~s~~~~~-------~~~~~~~~-~  197 (516)
T 1rsg_A          136 --------VSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHG--LDWKLLSAKDTY-------FGHQGRNA-F  197 (516)
T ss_dssp             ----------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHT--BCTTTSBHHHHC-------CCCSSCCE-E
T ss_pred             --------CCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhC--CChHHCChHHHH-------hhccCcch-h
Confidence                    001122222222211      00    11122221111 12  233344333321       11112233 6


Q ss_pred             cCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHh----------hC
Q psy893          225 PEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLD----------LI  293 (523)
Q Consensus       225 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~----------ll  293 (523)
                      ++| ++.|+++|++.+..  ++|++|++|++|..++ +..+.|+ .+|++++||+||+|+|+..+...          +.
T Consensus       198 ~~g-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~  273 (516)
T 1rsg_A          198 ALN-YDSVVQRIAQSFPQ--NWLKLSCEVKSITREP-SKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIE  273 (516)
T ss_dssp             ESC-HHHHHHHHHTTSCG--GGEETTCCEEEEEECT-TSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCE
T ss_pred             hhC-HHHHHHHHHHhCCC--CEEEECCEEEEEEEcC-CCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceE
Confidence            778 99999999887643  6899999999999864 3334677 78888999999999999985321          21


Q ss_pred             CCCCCCHHHHHHHhcCCCCCCeEEEEEecCCC
Q psy893          294 PKGNLDERTTQAVQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  325 (523)
                      -.+.+|+...+.++++.+. ++.+|++.++++
T Consensus       274 f~P~Lp~~~~~ai~~~~~~-~~~Kv~l~f~~~  304 (516)
T 1rsg_A          274 FQPPLKPVIQDAFDKIHFG-ALGKVIFEFEEC  304 (516)
T ss_dssp             EESCCCHHHHHHTTSSCCC-CCEEEEEEESSC
T ss_pred             ecCCCCHHHHHHHHhCCCC-cceEEEEEeCCC
Confidence            1235888889999999875 789999999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.88  E-value=1.5e-20  Score=191.83  Aligned_cols=398  Identities=16%  Similarity=0.105  Sum_probs=212.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccC---Cceeccchhhhhhh-hhhh---hccccccccCceEee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIP---GFQFSRASYLLSLL-RPHI---YKDLELKKHGLKLLT   73 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~---G~~~d~g~~~~~~~-~~~~---~~~lgl~~~g~~~~~   73 (523)
                      |||++||+||++|+++|++|+|||+++++||++.+.. .+   |+.++.|+.++... .+.+   ++++|+     +...
T Consensus         8 GaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~-----~~~~   81 (431)
T 3k7m_X            8 GGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRE-SRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGI-----PTAA   81 (431)
T ss_dssp             CCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEE-CSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTC-----CEEE
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEecCCCccCeeccee-ccCCCCceEecCCeeeCCCCcHHHHHHHHHhCC-----eeee
Confidence            8999999999999999999999999999999998875 45   88999998876544 4433   344443     3322


Q ss_pred             cCCCCcccC-CCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHH
Q psy893           74 RDPRSYTPL-SPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLF  152 (523)
Q Consensus        74 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
                      ........+ ...     +..........           .....   +.....++......+....+.....       
T Consensus        82 ~~~~~~~~~~~~~-----~~~~~~~~~~~-----------~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~-------  135 (431)
T 3k7m_X           82 ASEFTSFRHRLGP-----TAVDQAFPIPG-----------SEAVA---VEAATYTLLRDAHRIDLEKGLENQD-------  135 (431)
T ss_dssp             CCCCCEECCBSCT-----TCCSSSSCCCG-----------GGHHH---HHHHHHHHHHHHTTCCTTTCTTSSS-------
T ss_pred             cCCCCcEEEEecC-----CeecCCCCCCH-----------HHHHH---HHHHHHHHHHHHHhcCCCCCccCcc-------
Confidence            222111111 110     11111000000           11111   1111122222111111000000000       


Q ss_pred             hccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh--ccCCCCCCCcchHHHHHHHHhhc-cc----CCCCceeec
Q psy893          153 TRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL--IGAMVSPHSPSTSYVLLHHVMGG-AE----GVKGAWAYP  225 (523)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~g~~~~~  225 (523)
                        ..      ... .++.+++.+....+..+.++.....  .+  ..+.+.+.... +...... ..    ...... .+
T Consensus       136 --~~------~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~-~~  202 (431)
T 3k7m_X          136 --LE------DLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLG--QPADQASALWM-LQLVAAHHYSILGVVLSLDE-VF  202 (431)
T ss_dssp             --CG------GGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHS--SCTTTSBHHHH-HHHHHHTTSCHHHHHHTCCE-EE
T ss_pred             --hh------hhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcC--CChhhhhHHHH-HHHHHhcCCccceeecchhh-hc
Confidence              00      001 4666777777666666655433221  22  23333333222 1111100 00    011122 57


Q ss_pred             CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHH
Q psy893          226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQ  304 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~  304 (523)
                      .+|+..+++.+++   +.| +|++|++|++|..++ ++++ |+ .+|++++||+||+|+++..+ .++.-.+.++....+
T Consensus       203 ~~g~~~l~~~~~~---~~g-~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~vi~a~~~~~l-~~i~~~p~l~~~~~~  275 (431)
T 3k7m_X          203 SNGSADLVDAMSQ---EIP-EIRLQTVVTGIDQSG-DVVN-VTVKDGHAFQAHSVIVATPMNTW-RRIVFTPALPERRRS  275 (431)
T ss_dssp             TTCTHHHHHHHHT---TCS-CEESSCCEEEEECSS-SSEE-EEETTSCCEEEEEEEECSCGGGG-GGSEEESCCCHHHHH
T ss_pred             CCcHHHHHHHHHh---hCC-ceEeCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCcchH-hheeeCCCCCHHHHH
Confidence            8899888888776   556 999999999999877 6654 66 77878999999999999985 566444568888888


Q ss_pred             HHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCC
Q psy893          305 AVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSLD  384 (523)
Q Consensus       305 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~d  384 (523)
                      .++.+.+. ..++|++.++.+.              .    .++. ..+               . ....++-..+    
T Consensus       276 ~~~~~~~~-~~~kv~~~~~~~~--------------~----~i~~-~~d---------------~-~~~~~~~~~~----  315 (431)
T 3k7m_X          276 VIEEGHGG-QGLKILIHVRGAE--------------A----GIEC-VGD---------------G-IFPTLYDYCE----  315 (431)
T ss_dssp             HHHHCCCC-CEEEEEEEEESCC--------------T----TEEE-EBS---------------S-SSSEEEEEEE----
T ss_pred             HHHhCCCc-ceEEEEEEECCCC--------------c----CceE-cCC---------------C-CEEEEEeCcC----
Confidence            88887665 5689999888642              0    1222 121               0 0122222211    


Q ss_pred             CCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCCccccC
Q psy893          385 NTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG  464 (523)
Q Consensus       385 ~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~  464 (523)
                         .+++..++..++. .+.       +.....    +.+.+.|++++|++.  .+...   ...|... ....|+. ..
T Consensus       316 ---~~~~~~~l~~~~~-g~~-------~~~~~~----~~~~~~l~~~~~~~~--~~~~~---~~~W~~d-~~~~G~~-~~  373 (431)
T 3k7m_X          316 ---VSESERLLVAFTD-SGS-------FDPTDI----GAVKDAVLYYLPEVE--VLGID---YHDWIAD-PLFEGPW-VA  373 (431)
T ss_dssp             ---CSSSEEEEEEEEE-TTT-------CCTTCH----HHHHHHHHHHCTTCE--EEEEE---CCCTTTC-TTTSSSS-CC
T ss_pred             ---CCCCCeEEEEEec-ccc-------CCCCCH----HHHHHHHHHhcCCCC--ccEeE---ecccCCC-CCCCCCC-CC
Confidence               1134444444432 111       111111    245667888898764  22111   1234432 1223442 21


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCeEecCCCCC--CCCCCCCc--cHHHHHHHHHHH
Q psy893          465 ALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAH--PGGGVCGA--PGYIAAQMVNRL  520 (523)
Q Consensus       465 ~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~--pg~g~~~a--sG~~aA~~i~~~  520 (523)
                       ..+.+....+|       ..+.|+.+|||||..+.  ..+.+.||  ||.+||++|+-.
T Consensus       374 -~~~g~~~~~~~-------~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          374 -PRVGQFSRVHK-------ELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             -CCTTTTTTSSG-------GGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             -cCCCCCcccHH-------HHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence             22333222223       45668899999996653  22345577  999999999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.87  E-value=8.3e-22  Score=203.17  Aligned_cols=413  Identities=15%  Similarity=0.139  Sum_probs=220.4

Q ss_pred             CCChhHHHHHHHHHHcC-CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAG-LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++| .+|+|+|+++++||++++....+|+.+|.|++++....+   .+++++. +    ++.....
T Consensus        16 G~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~-~----~~~~~~~   90 (484)
T 4dsg_A           16 GAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV-Q----GWNVLQR   90 (484)
T ss_dssp             CCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHC-S----CEEEEEC
T ss_pred             CcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHh-h----hhhhccC
Confidence            89999999999999999 799999999999999998533689999999887543333   3444442 2    1221111


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRG  156 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (523)
                      ..+. ...      |+.+.++-+.     .+..+.....      ...+..+...-.........++.++          
T Consensus        91 ~~~~-~~~------g~~~~~P~~~-----~~~~l~~~~~------~~~~~~ll~~~~~~~~~~~~s~~e~----------  142 (484)
T 4dsg_A           91 ESWV-WVR------GRWVPYPFQN-----NIHRLPEQDR------KRCLDELVRSHARTYTEPPNNFEES----------  142 (484)
T ss_dssp             CCEE-EET------TEEEESSGGG-----CGGGSCHHHH------HHHHHHHHHHHHCCCSSCCSSHHHH----------
T ss_pred             ceEE-EEC------CEEEEeCccc-----hhhhCCHHHH------HHHHHHHHHHHhccCCCCCCCHHHH----------
Confidence            1111 111      5544443110     0111211111      0111111110000000011111111          


Q ss_pred             cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh-ccC-CCCCCCcc-hHHHHHHHHhhccc----CCCCceeecC-CC
Q psy893          157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL-IGA-MVSPHSPS-TSYVLLHHVMGGAE----GVKGAWAYPE-GG  228 (523)
Q Consensus       157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~~~----~~~g~~~~~~-gG  228 (523)
                           .   ...+.+.+.+.+-.+....++..... +.. ...+.-+. ....++...+....    ...+.+.||. ||
T Consensus       143 -----~---~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG  214 (484)
T 4dsg_A          143 -----F---TRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGG  214 (484)
T ss_dssp             -----H---HHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSC
T ss_pred             -----H---HHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCC
Confidence                 1   11112222222323333333322111 000 00011010 11112222221111    0123334554 99


Q ss_pred             HHHHHHHHHHHHHHCCcEEEeC--ceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC--CCCCHHHH
Q psy893          229 MGAVSQALARSAQASGAQLFTS--QTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK--GNLDERTT  303 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~--~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~--~~~~~~~~  303 (523)
                      ++.|+++|++.+.+  .+|+++  ++|++|..++ ++   |+ .+|+++.||+||+|+|++.+ .+++.+  ..+++...
T Consensus       215 ~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~~-~~---v~~~~G~~~~ad~VI~a~p~~~~-~~ll~~~~~~~~~~~~  287 (484)
T 4dsg_A          215 TGIIYQAIKEKLPS--EKLTFNSGFQAIAIDADA-KT---ITFSNGEVVSYDYLISTVPFDNL-LRMTKGTGFKGYDEWP  287 (484)
T ss_dssp             THHHHHHHHHHSCG--GGEEECGGGCEEEEETTT-TE---EEETTSCEEECSEEEECSCHHHH-HHHEECSSCTTGGGHH
T ss_pred             HHHHHHHHHhhhhh--CeEEECCCceeEEEEecC-CE---EEECCCCEEECCEEEECCCHHHH-HHHhhccCCCCCHHHH
Confidence            99999999997754  279999  5699999876 53   45 77888999999999999996 467643  23667778


Q ss_pred             HHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q psy893          304 QAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLPSSL  383 (523)
Q Consensus       304 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~s~~  383 (523)
                      +.++++.|. ++.+|+++++.+...         .....+  ++++ .+.                 +.++..++++++.
T Consensus       288 ~~l~~l~y~-s~~~v~l~~~~~~~~---------~~~~~~--~i~v-p~~-----------------~~~~~ri~~~s~~  337 (484)
T 4dsg_A          288 AIADKMVYS-STNVIGIGVKGTPPP---------HLKTAC--WLYF-PED-----------------TSPFYRATVFSNY  337 (484)
T ss_dssp             HHHHHCCEE-EEEEEEEEEESCCCG---------GGTTCC--EEEC-CST-----------------TCSCSEEECGGGT
T ss_pred             HHHhCCCcC-ceEEEEEEEcCCCcc---------cCCCCe--EEEE-EcC-----------------CCeEEEEEeecCC
Confidence            888999886 789999999865310         001223  5665 221                 1255567888889


Q ss_pred             CCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CCeEEeEecChhhHHHhcCCCCCcc
Q psy893          384 DNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT--QDIVGYEILTPPDLEKEFGLTGGNI  461 (523)
Q Consensus       384 d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~--~~i~~~~~~tP~~~~~~~~~~~G~~  461 (523)
                      +|.++|+|++++.+.+....       .|. ..++++.+.++++|.++. .++  +.++...+.   .|...++  ....
T Consensus       338 ~p~~ap~g~~~l~~e~~~~~-------~~~-~~d~~l~~~a~~~L~~~~-~~~~~~~~~~~~v~---r~~~~yP--~y~~  403 (484)
T 4dsg_A          338 SKYNVPEGHWSLMLEVSESK-------YKP-VNHSTLIEDCIVGCLASN-LLLPEDLLVSKWHY---RIEKGYP--TPFI  403 (484)
T ss_dssp             CGGGSCTTEEEEEEEEEEBT-------TBC-CCTTSHHHHHHHHHHHTT-SCCTTCCEEEEEEE---EEEEEEE--CCBT
T ss_pred             CcccCCCCeEEEEEEEecCc-------CCc-CCHHHHHHHHHHHHHHcC-CCCccceEEEEEEE---EeCcccc--CCCc
Confidence            99999999988766543111       121 234788999999999974 443  233322221   1111111  1111


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCCCCeEecCCCCCCCC---CCCCc--cHHHHHHHHH
Q psy893          462 FHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGG---GVCGA--PGYIAAQMVN  518 (523)
Q Consensus       462 ~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~LylaG~~~~pg~---g~~~a--sG~~aA~~i~  518 (523)
                      .+. ..+.++   ++       ... .. |||++|.......   +++.|  +|..||+.|+
T Consensus       404 ~~~-~~~~~~---~~-------~l~-~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          404 GRN-NLLEKA---QP-------ELM-SR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             THH-HHHHHH---HH-------HHH-HT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred             cHH-HHHHHH---HH-------HHH-hC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence            000 001111   11       111 23 9999998542222   44545  9999999998

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.85  E-value=1.3e-20  Score=191.87  Aligned_cols=259  Identities=15%  Similarity=0.103  Sum_probs=145.9

Q ss_pred             CCChhHHHHHHHHHHcC-CcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAG-LSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++| ++|+|+|+++++||+++|.. .+|+.+|.|++++....+   .+++++|++.     ...+.
T Consensus        13 GaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~-----~~~~~   86 (424)
T 2b9w_A           13 GAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDRTGDKV-----DGPKL   86 (424)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCHHHHHHHHHHCCCC-----CSCCC
T ss_pred             CcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcHHHHHHHHHhCCcc-----ccccc
Confidence            89999999999999999 99999999999999999987 689999999887543323   4566666432     11111


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRG  156 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (523)
                      . ......+     |+.+....++...               ..+...+.++...+...+......  .     ......
T Consensus        87 ~-~~~~~~~-----g~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~--~-----~~~~~~  138 (424)
T 2b9w_A           87 R-REFLHED-----GEIYVPEKDPVRG---------------PQVMAAVQKLGQLLATKYQGYDAN--G-----HYNKVH  138 (424)
T ss_dssp             C-EEEECTT-----SCEECGGGCTTHH---------------HHHHHHHHHHHHHHHTTTTTTTSS--S-----SSSCCC
T ss_pred             c-ceeEcCC-----CCEeccccCcccc---------------hhHHHHHHHHHHHHhhhhhhcccc--c-----chhhhh
Confidence            0 1111111     3322111111100               001111112211111100000000  0     000000


Q ss_pred             cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHh--hcc-cCCCCceeecCCCHHHHH
Q psy893          157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVM--GGA-EGVKGAWAYPEGGMGAVS  233 (523)
Q Consensus       157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~g~~~~~~gG~~~l~  233 (523)
                            +.+..|+.+++.++..+. +...+........+..+.+.++.+.+ .+..  ... ....+.+ .+.||++.++
T Consensus       139 ------~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-~~~~g~~~l~  209 (424)
T 2b9w_A          139 ------EDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYGHFDNVPAAYVL-KYLDFVTMMSFAKGDLW-TWADGTQAMF  209 (424)
T ss_dssp             ------GGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCCCTTTSBHHHHH-HHSCHHHHHHHHHTCCB-CCTTCHHHHH
T ss_pred             ------hhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccCChHhcCHHHHH-HhhhHhhhhcccCCceE-EeCChHHHHH
Confidence                  112357888888776544 33333222211222345555555532 2110  000 0122345 7899999999


Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCC
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYA  312 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  312 (523)
                      ++|.+.+   +.+|++|++|++|..++ +++. |+ .+| ++.||+||+|+++..+ .++++.  . +..++.+.++.+.
T Consensus       210 ~~l~~~l---~~~v~~~~~V~~i~~~~-~~v~-v~~~~g-~~~ad~Vv~a~~~~~~-~~~l~~--~-~~~~~~~~~~~~~  279 (424)
T 2b9w_A          210 EHLNATL---EHPAERNVDITRITRED-GKVH-IHTTDW-DRESDVLVLTVPLEKF-LDYSDA--D-DDEREYFSKIIHQ  279 (424)
T ss_dssp             HHHHHHS---SSCCBCSCCEEEEECCT-TCEE-EEESSC-EEEESEEEECSCHHHH-TTSBCC--C-HHHHHHHTTCEEE
T ss_pred             HHHHHhh---cceEEcCCEEEEEEEEC-CEEE-EEECCC-eEEcCEEEECCCHHHH-hhccCC--C-HHHHHHHhcCCcc
Confidence            9998865   56899999999999887 6664 76 666 4899999999999985 466643  2 3344456666553

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.83  E-value=3.4e-19  Score=175.88  Aligned_cols=229  Identities=14%  Similarity=0.228  Sum_probs=145.0

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCC--CCCCH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPK--GNLDE  300 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~--~~~~~  300 (523)
                      ...+|+..+++.|++.+   |++|+++++|++|..++ +++. |+ .+|+++.||.||+|+|+..+ .+|+.+  +.+++
T Consensus       106 ~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~-~~~~-v~~~~g~~~~ad~vV~A~p~~~~-~~ll~~~~~~l~~  179 (342)
T 3qj4_A          106 VAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRD-DKWE-VSKQTGSPEQFDLIVLTMPVPEI-LQLQGDITTLISE  179 (342)
T ss_dssp             ECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECS-SSEE-EEESSSCCEEESEEEECSCHHHH-TTCBSTHHHHSCH
T ss_pred             ecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcC-CEEE-EEECCCCEEEcCEEEECCCHHHH-HHHhcccccccCH
Confidence            67889999999999865   89999999999999987 6654 66 67877899999999999985 578764  24667


Q ss_pred             HHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcC
Q psy893          301 RTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEMVLP  380 (523)
Q Consensus       301 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~  380 (523)
                      ...+.++++.|. ++.+|++.++++. |+.         .+ ..+. ++ .++                  .+.-+++..
T Consensus       180 ~~~~~l~~~~~~-~~~~v~l~~~~~~-~~~---------~~-~~g~-~~-~~~------------------~~~~~~~~~  227 (342)
T 3qj4_A          180 CQRQQLEAVSYS-SRYALGLFYEAGT-KID---------VP-WAGQ-YI-TSN------------------PCIRFVSID  227 (342)
T ss_dssp             HHHHHHHTCCBC-CEEEEEEECSSCC---C---------CS-CSEE-EC-SSC------------------SSEEEEEEH
T ss_pred             HHHHHHhcCCcc-ccEEEEEEECCCC-ccC---------Cc-eeeE-Ec-cCC------------------cceEEEEcc
Confidence            788899999887 8899999998641 211         11 1222 22 111                  123344333


Q ss_pred             CCCCCCCC-CCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEecChhhHHHhcCCCCC
Q psy893          381 SSLDNTLS-PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGG  459 (523)
Q Consensus       381 s~~d~~~a-p~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G  459 (523)
                      +.+ |.+. |++..++.+++. ..+.    .++.+..++++.+.+++.|.++++... ..+...+.   .|.  +..|+.
T Consensus       228 ~~k-~~r~~~~~~~~~v~~~~-~~~~----~~~~~~~~~~~~~~~~~~l~~~~g~~~-~p~~~~v~---rW~--~a~p~~  295 (342)
T 3qj4_A          228 NKK-RNIESSEIGPSLVIHTT-VPFG----VTYLEHSIEDVQELVFQQLENILPGLP-QPIATKCQ---KWR--HSQVTN  295 (342)
T ss_dssp             HHH-TTCCCC-CCCEEEEEEC-HHHH----HHTTTSCHHHHHHHHHHHHHHHSCSCC-CCSEEEEE---EET--TCSBSS
T ss_pred             ccC-CCCCCCCCCceEEEECC-HHHH----HHhhcCCHHHHHHHHHHHHHHhccCCC-CCceeeec---ccc--cccccc
Confidence            333 3332 333333444432 1111    112334568999999999999997433 22222221   222  111211


Q ss_pred             ccccCcccccccccCCCCCCCCCCCCC--CCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHh
Q psy893          460 NIFHGALSLNQLLFNRPLPIQGPSSPF--TLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       460 ~~~g~~~~~~q~~~~rp~~~~~~~~~~--t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~  521 (523)
                         +..        .+|       ...  ...+||++||||+. |+|+++|  ||..||++|++.|
T Consensus       296 ---~~~--------~~~-------~~~~~~~~~~l~laGd~~~-g~~v~~ai~sg~~aa~~i~~~l  342 (342)
T 3qj4_A          296 ---AAA--------NCP-------GQMTLHHKPFLACGGDGFT-QSNFDGCITSALCVLEALKNYI  342 (342)
T ss_dssp             ---CCS--------SSC-------SCEEEETTTEEEECSGGGS-CSSHHHHHHHHHHHHHHHTTC-
T ss_pred             ---ccC--------CCc-------ceeEecCCccEEEEccccC-CCCccHHHHHHHHHHHHHHhhC
Confidence               110        122       222  36789999999984 5789988  9999999998754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.83  E-value=6.5e-20  Score=185.53  Aligned_cols=259  Identities=13%  Similarity=0.155  Sum_probs=159.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-------------------CCceeccchhhhhhhhh--hhh
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-------------------PGFQFSRASYLLSLLRP--HIY   59 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-------------------~G~~~d~g~~~~~~~~~--~~~   59 (523)
                      |+|++|+++|+.|+++|++|+|+||++++||+++++...                   .+|.+|.+++++....+  .++
T Consensus        27 G~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~~g~L~~lL  106 (475)
T 3p1w_A           27 GTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVGGNLVKIL  106 (475)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEETTSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeecCcHHHHHH
Confidence            899999999999999999999999999999999887521                   24677877766432222  455


Q ss_pred             ccccccccCceEeecCCCCcccCCCCc--ccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhh
Q psy893           60 KDLELKKHGLKLLTRDPRSYTPLSPDK--WTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFD  137 (523)
Q Consensus        60 ~~lgl~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (523)
                      .++++.++ ++|...++. |.....+.  .+.+++.+.++.+...... ...+...+...+.+|+..+.++.+.-.....
T Consensus       107 ~~~gv~~y-lef~~~~~~-y~~~~~~~~~~~~~g~~~~VPss~~e~~~-~~lLs~~eK~~l~kFL~~l~~~~~~~~~~~~  183 (475)
T 3p1w_A          107 KKTRVTNY-LEWLVVEGS-YVYQHQKKGFLTSEKFIHKVPATDMEALV-SPLLSLMEKNRCKNFYQYVSEWDANKRNTWD  183 (475)
T ss_dssp             HHTTCGGG-SCEEECSEE-EEEEEECCCSSSCCEEEEECCCSHHHHHT-CTTSCHHHHHHHHHHHHHHHHCCTTCGGGST
T ss_pred             HHCCchhe-eEEEecCcc-eEEecCccccccCCCceEeCCCCHHHHhh-ccCCCHHHHHHHHHHHHHHHhhhhccchhhh
Confidence            56677777 888776653 21110000  0001556666776443332 1334455666666666554432211000000


Q ss_pred             cCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHH---HHHHhhc
Q psy893          138 IAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHVMGG  214 (523)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  214 (523)
                        ..                     +....|+.+|++++..++.++.++.....+.....+...++...+   ..+..+.
T Consensus       184 --~~---------------------~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl  240 (475)
T 3p1w_A          184 --NL---------------------DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSI  240 (475)
T ss_dssp             --TC---------------------CTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHH
T ss_pred             --cc---------------------cccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHH
Confidence              00                     001357788898888888888766432211111111112222211   1111110


Q ss_pred             ccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEE-CCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          215 AEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITL-DSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       215 ~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+....+.||+||++.|+++|++.+++.|++|+++++|++|.. ++ +++++|+ .+|+++.||+||++++..
T Consensus       241 ~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          241 SAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             hhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECCCcc
Confidence            01112234599999999999999999999999999999999999 55 8889999 788889999999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.81  E-value=1.7e-18  Score=180.01  Aligned_cols=262  Identities=10%  Similarity=0.090  Sum_probs=157.9

Q ss_pred             hhhccccccccCceEeecCCCCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhh
Q psy893           57 HIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLF  136 (523)
Q Consensus        57 ~~~~~lgl~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (523)
                      .++.++|+.++ ++|...+.. |. + .     +|+.+.++.+....... ..+...+...+.+|+..+.++..      
T Consensus       241 ~LL~~sgV~~y-LEFk~v~~~-y~-~-~-----~G~~~~VPas~~eif~s-~~Lsl~EKr~L~kFl~~~~~~~~------  304 (650)
T 1vg0_A          241 DLLIKSNVSRY-AEFKNITRI-LA-F-R-----EGTVEQVPCSRADVFNS-KQLTMVEKRMLMKFLTFCVEYEE------  304 (650)
T ss_dssp             HHHHHHTGGGG-CCEEECCEE-EE-E-S-----SSSEEECCCSHHHHHHC-SSSCHHHHHHHHHHHHHHHTGGG------
T ss_pred             HHHHHcCCcce-eeEEEccce-EE-e-c-----CCCEeECCCCHHHHHhC-cCCCHHHHHHHHHHHHHHHHhcc------
Confidence            34555566666 666654432 11 1 2     16666677776554443 44555566666565554433110      


Q ss_pred             hcCCCChhhHHHHHHHhccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHH---HHHHhh
Q psy893          137 DIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVL---LHHVMG  213 (523)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  213 (523)
                           ..               ..+..+...|+.+++++++.++.++.++.......   .....++...+   ..++..
T Consensus       305 -----~p---------------~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~lal~---~~~~~pa~~~l~~i~~~l~s  361 (650)
T 1vg0_A          305 -----HP---------------DEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMT---SETTSCTVDGLKATKKFLQC  361 (650)
T ss_dssp             -----CH---------------HHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTTC-----CCSCBHHHHHHHHHHHHHH
T ss_pred             -----Ch---------------HHHhhhccCCHHHHHHHhCCCHHHHHHHHHHHhcc---CCCCCchhHHHHHHHHHHHH
Confidence                 00               01112245799999999999999999887533221   11212233222   222221


Q ss_pred             cccCCCCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eCCeEEEcCEEEEcCChHHHHHh
Q psy893          214 GAEGVKGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TNGLEIKAKYVLSNTTAKCTLLD  291 (523)
Q Consensus       214 ~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~  291 (523)
                      ...+..+.+.|+.||++.|+++|.+.++..|++|+++++|++|..+++ +++++|+ .+|+++.||+||++.  ..    
T Consensus       362 l~~yg~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~----  435 (650)
T 1vg0_A          362 LGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SY----  435 (650)
T ss_dssp             TTSSSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GG----
T ss_pred             HHhhccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hh----
Confidence            111222345599999999999999999999999999999999998764 6788888 789999999999842  22    


Q ss_pred             hCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCC
Q psy893          292 LIPKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPST  371 (523)
Q Consensus       292 ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~  371 (523)
                       ++.. +    .   .+..+ ..+..+.+.+++++.-         ....++.+.+.+ +.. +           |   .
T Consensus       436 -lp~~-~----~---~~~~~-~~v~R~i~i~~~pi~~---------~~~~~~~~~iii-P~~-~-----------g---~  480 (650)
T 1vg0_A          436 -LSEN-T----C---SRVQY-RQISRAVLITDGSVLR---------TDADQQVSILTV-PAE-E-----------P---G  480 (650)
T ss_dssp             -BCTT-T----T---TTCCC-EEEEEEEEEESSCSSC---------CSCCCCCEEEEE-CCS-S-----------T---T
T ss_pred             -cCHh-H----h---ccccc-cceEEEEEEecCCCCC---------cCCCcceEEEEc-cCc-c-----------C---C
Confidence             2221 1    0   11122 2567788888876521         111123334555 221 0           1   3


Q ss_pred             CCeEEEEcCCCCCCCCCCCCceEEEEEe
Q psy893          372 RPMIEMVLPSSLDNTLSPPGHHVCLLFT  399 (523)
Q Consensus       372 ~~~~~v~~~s~~d~~~ap~G~~~i~~~~  399 (523)
                      ++.++++.+|. ++..+|+|++++++.+
T Consensus       481 ~~~V~i~~~Ss-~~~~cP~G~~Vv~lst  507 (650)
T 1vg0_A          481 SFAVRVIELCS-STMTCMKGTYLVHLTC  507 (650)
T ss_dssp             SCCEEEEEECG-GGTSSCTTCEEEEEEE
T ss_pred             CCCEEEEEeCC-CCCCCCCCCEEEEEEe
Confidence            47788888877 8899999999887654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.81  E-value=6.7e-19  Score=190.56  Aligned_cols=248  Identities=15%  Similarity=0.122  Sum_probs=142.5

Q ss_pred             CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------CeEEEcCEEEEcCChHHHHHhh
Q psy893          220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------GLEIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g~~~~ad~vI~a~~~~~~~~~l  292 (523)
                      |.+..++||++.|+++|++     +.+|++|++|++|..++ +++ .|+ .+      |++++||+||+|+|+..+ .++
T Consensus       562 g~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~~-~gV-~V~~~~~~~~~~g~~i~AD~VIvTvPl~vL-k~l  633 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTA-SGC-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVL-KQQ  633 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEET-TEE-EEEEEESSSTTCEEEEEESEEEECCCHHHH-HCS
T ss_pred             CceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEcC-CcE-EEEEeecccCCCCeEEECCEEEECCCHHHH-Hhh
Confidence            3344789999999999987     34799999999999987 554 355 44      568999999999999985 553


Q ss_pred             C----CCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCC
Q psy893          293 I----PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGI  368 (523)
Q Consensus       293 l----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~  368 (523)
                      +    ..+.+|....+.++++.+. ++.+|++.++++ .|.           ....+.-++.... .             
T Consensus       634 ~~~I~F~P~LP~~k~~AI~~l~~g-~v~KV~L~F~~~-fW~-----------~~~~~fG~l~~~~-~-------------  686 (852)
T 2xag_A          634 PPAVQFVPPLPEWKTSAVQRMGFG-NLNKVVLCFDRV-FWD-----------PSVNLFGHVGSTT-A-------------  686 (852)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEEC-CCEEEEEECSSC-CSC-----------TTCCEEEECCSSS-T-------------
T ss_pred             hcccccCCCCCHHHHHHHHcCCcc-ceEEEEEEcCCc-ccC-----------CCCCeeeeecccc-C-------------
Confidence            2    2345888888889999876 789999999864 341           0011112221110 0             


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecCh
Q psy893          369 PSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTP  447 (523)
Q Consensus       369 ~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP  447 (523)
                        ..+.+++.+++.        +..++..++. .+..    ..+.....+++.+.+++.|.++++... ..++...+.  
T Consensus       687 --~~~~l~~~~~~~--------~~pvLl~~v~-G~~a----~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vt--  749 (852)
T 2xag_A          687 --SRGELFLFWNLY--------KAPILLALVA-GEAA----GIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS--  749 (852)
T ss_dssp             --TTTTTCEEEECS--------SSSEEEEEEC-HHHH----HHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEEC--
T ss_pred             --CCCceEEEecCC--------CCCEEEEEec-CcCH----HHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEE--
Confidence              001111222211        1224544442 1110    112233458889999999999986432 233332222  


Q ss_pred             hhHHHhcCCCCCcccc--Ccccc-cccccCCCCCCCC-CCCCCCCCCCeEecCCCCCC--CCCCCCc--cHHHHHHHHHH
Q psy893          448 PDLEKEFGLTGGNIFH--GALSL-NQLLFNRPLPIQG-PSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       448 ~~~~~~~~~~~G~~~g--~~~~~-~q~~~~rp~~~~~-~~~~~t~i~~LylaG~~~~p--g~g~~~a--sG~~aA~~i~~  519 (523)
                       .|.+. ....|+.-.  ..... ..-...+|..... .+..+++.++|||||+.+..  .+.+.||  ||.+||++|++
T Consensus       750 -rW~~d-p~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~  827 (852)
T 2xag_A          750 -RWRAD-PWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD  827 (852)
T ss_dssp             -CTTTC-TTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             -ecCCC-CCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHH
Confidence             34432 122343210  00000 0001122321000 00235577899999999864  2345577  99999999998


Q ss_pred             Hh
Q psy893          520 LM  521 (523)
Q Consensus       520 ~~  521 (523)
                      .+
T Consensus       828 ~l  829 (852)
T 2xag_A          828 QF  829 (852)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.81  E-value=6.5e-19  Score=188.32  Aligned_cols=249  Identities=14%  Similarity=0.104  Sum_probs=143.3

Q ss_pred             CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC------CeEEEcCEEEEcCChHHHHHhh
Q psy893          220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN------GLEIKAKYVLSNTTAKCTLLDL  292 (523)
Q Consensus       220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~------g~~~~ad~vI~a~~~~~~~~~l  292 (523)
                      |.+..++||++.|+++|++     +.+|++|++|++|..++ +++ .|+ .+      |++++||+||+|+|+..+ .++
T Consensus       391 g~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~-~~v-~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL-~~l  462 (662)
T 2z3y_A          391 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTA-SGC-EVIAVNTRSTSQTFIYKCDAVLCTLPLGVL-KQQ  462 (662)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEET-TEE-EEEEEESSCTTCEEEEEESEEEECCCHHHH-HCS
T ss_pred             CceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECC-CcE-EEEEeecccCCCCeEEEeCEEEECCCHHHH-hcc
Confidence            3334789999999999886     46899999999999987 544 455 44      568999999999999985 553


Q ss_pred             C----CCCCCCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCC
Q psy893          293 I----PKGNLDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGI  368 (523)
Q Consensus       293 l----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~  368 (523)
                      .    -.+.+|+...+.++++.+. ++.+|++.++++ .|.        .   .....-++ ...               
T Consensus       463 ~~~i~f~P~LP~~k~~Ai~~l~~g-~~~KV~l~f~~~-fW~--------~---~~~~~G~l-~~~---------------  513 (662)
T 2z3y_A          463 PPAVQFVPPLPEWKTSAVQRMGFG-NLNKVVLCFDRV-FWD--------P---SVNLFGHV-GST---------------  513 (662)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEEC-CCEEEEEECSSC-CSC--------T---TCSEEEEC-CSS---------------
T ss_pred             cCceEEcCCCCHHHHHHHHhCCcc-ceeEEEEEcCcc-ccc--------C---CCCceeee-cCC---------------
Confidence            1    2345888888889999876 789999999874 341        0   01111122 111               


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecCh
Q psy893          369 PSTRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTP  447 (523)
Q Consensus       369 ~~~~~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP  447 (523)
                      ....+.+++.+++.        +..++..++. .+..    ..+.....+++.+.+++.|.++++... ..++...+.  
T Consensus       514 ~~~~~~~~~~~~~~--------~~~vL~~~~~-G~~a----~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~--  578 (662)
T 2z3y_A          514 TASRGELFLFWNLY--------KAPILLALVA-GEAA----GIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS--  578 (662)
T ss_dssp             STTTTEEEEEECCS--------SSSEEEEEEC-THHH----HHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEEC--
T ss_pred             CCCCCceeEEEeCC--------CCCEEEEEec-cHhH----HHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEE--
Confidence            00123344443321        2234544442 1110    112223457888999999999986432 223322222  


Q ss_pred             hhHHHhcCCCCCccccCccc--c-cccccCCCCCCCC-CCCCCCCCCCeEecCCCCCC--CCCCCCc--cHHHHHHHHHH
Q psy893          448 PDLEKEFGLTGGNIFHGALS--L-NQLLFNRPLPIQG-PSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       448 ~~~~~~~~~~~G~~~g~~~~--~-~q~~~~rp~~~~~-~~~~~t~i~~LylaG~~~~p--g~g~~~a--sG~~aA~~i~~  519 (523)
                       .|.+. ....|+.-.....  . ..-...+|..... .+..+++.++|||||+.|..  .+.+.||  ||.+||++|++
T Consensus       579 -~W~~d-p~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~  656 (662)
T 2z3y_A          579 -RWRAD-PWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD  656 (662)
T ss_dssp             -CTTTC-TTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             -EECCC-CCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence             34432 2223432100000  0 0001122311000 00234577899999999864  2345577  99999999998


Q ss_pred             Hhc
Q psy893          520 LMR  522 (523)
Q Consensus       520 ~~~  522 (523)
                      .++
T Consensus       657 ~~~  659 (662)
T 2z3y_A          657 QFL  659 (662)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.81  E-value=9.8e-19  Score=188.16  Aligned_cols=243  Identities=14%  Similarity=0.088  Sum_probs=140.3

Q ss_pred             CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC-CCCC
Q psy893          220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI-PKGN  297 (523)
Q Consensus       220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll-~~~~  297 (523)
                      +....+.+|++.++++|++     |++|+++++|++|..++ +++. |+ .+|+++.||+||+|+|+..+....+ ..+.
T Consensus       524 G~~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~~-~~v~-V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~  596 (776)
T 4gut_A          524 GDHTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYSG-DEVQ-VTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPP  596 (776)
T ss_dssp             SCEEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECSS-SSEE-EEETTCCEEEESEEEECCCHHHHHTTCSEEESC
T ss_pred             CCeEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEcC-CEEE-EEECCCcEEEcCEEEECCCHHHHhhcccccCCC
Confidence            3334788999999888875     67899999999999887 6654 66 7888899999999999988532222 2345


Q ss_pred             CCHHHHHHHhcCCCCCCeEEEEEecCCCCcccCCCCCCCCCCCCCCcceEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEE
Q psy893          298 LDERTTQAVQSIDYASPVTKINVALKSIPNFLADPNPSENTVQPHHHGSIHLNCEDMQQVFDAYQDATQGIPSTRPMIEM  377 (523)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v  377 (523)
                      +|+...+.++++.+. ++.+|++.++++ .|..        ......+.-++ ....+               ..+.+.+
T Consensus       597 Lp~~~~~ai~~l~~g-~~~KV~l~f~~~-FW~~--------~~~g~~~fG~l-~~~~~---------------~~~~~~~  650 (776)
T 4gut_A          597 LSEKKMKAINSLGAG-IIEKIALQFPYR-FWDS--------KVQGADFFGHV-PPSAS---------------KRGLFAV  650 (776)
T ss_dssp             CCHHHHHHHHHEEEE-CCEEEEEECSSC-TTHH--------HHTTCSEEEEC-CSSGG---------------GTTEEEE
T ss_pred             CCHHHHHHHHhCCCe-eEEEEEEecCcc-cccc--------cCCCCceEEee-cCCcC---------------CCceEEE
Confidence            888888889988765 788999999864 3310        00000111112 11100               1233333


Q ss_pred             EcCCCCCCCCCCCCc-eEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC-CCeEEeEecChhhHHHhcC
Q psy893          378 VLPSSLDNTLSPPGH-HVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFG  455 (523)
Q Consensus       378 ~~~s~~d~~~ap~G~-~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tP~~~~~~~~  455 (523)
                      ...      ..|+|. .++..++.....     ..+.....+++.+.+++.|.++++... ...+...+.   .|.+. .
T Consensus       651 ~~d------~~p~g~~~vL~~~i~G~~a-----~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt---~W~~d-p  715 (776)
T 4gut_A          651 FYD------MDPQKKHSVLMSVIAGEAV-----ASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT---RWSTD-P  715 (776)
T ss_dssp             EEE------SCTTSCSCEEEEEECTHHH-----HHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEEC---CGGGC-T
T ss_pred             Eec------CCCCCCceEEEEEecchhH-----HHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEe---cCCCC-C
Confidence            322      134443 444444421100     012222458899999999999997432 222222222   35442 2


Q ss_pred             CCCCccccCcccccccccCCCCCCCCCCCCCCC-CCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHH
Q psy893          456 LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL-IPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNR  519 (523)
Q Consensus       456 ~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~-i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~  519 (523)
                      ...|+.-..  .+.+.....+       ....| .++|||||+++++.  +.+.||  ||.+||++|++
T Consensus       716 ~s~Gsys~~--~~g~~~~~~~-------~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          716 WIQMAYSFV--KTGGSGEAYD-------IIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             TTCCSEEEE--BTTCCTHHHH-------HHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCcc--CCCCchhHHH-------HHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence            223432110  0000000000       11223 37899999999642  345577  99999999974

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.78  E-value=2.4e-18  Score=181.11  Aligned_cols=99  Identities=12%  Similarity=0.032  Sum_probs=75.4

Q ss_pred             eeecCCCHHHHHHHHHHHHHHCCcEEEeCceee--EEEECCCCC-----eEEEE--eCCe--EEEcCEEEEcCChHHHHH
Q psy893          222 WAYPEGGMGAVSQALARSAQASGAQLFTSQTVT--EITLDSDKR-----ASGVV--TNGL--EIKAKYVLSNTTAKCTLL  290 (523)
Q Consensus       222 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~--~I~~~~~~~-----~~~v~--~~g~--~~~ad~vI~a~~~~~~~~  290 (523)
                      +..+.||++.|+++|++.+.+ |++|+++++|+  +|..++++.     .+.|.  .+|+  +++||+||+|+|+..+..
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~  417 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTP  417 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhh
Confidence            448999999999999998753 67799999999  999865231     24463  5666  789999999999988532


Q ss_pred             -----hhC----------------------CCCCC-C-------HHHHHHHhcCCCCCCeEEEEEec
Q psy893          291 -----DLI----------------------PKGNL-D-------ERTTQAVQSIDYASPVTKINVAL  322 (523)
Q Consensus       291 -----~ll----------------------~~~~~-~-------~~~~~~~~~~~~~~~~~~v~~~~  322 (523)
                           ++-                      .++.+ |       ....+.+++++|. +..||++.+
T Consensus       418 ~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~-~s~Kv~l~~  483 (721)
T 3ayj_A          418 IVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMA-RSSKVFATV  483 (721)
T ss_dssp             HHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEE-CEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcc-cceEEEEEE
Confidence                 121                      12224 7       7888899999886 678999999

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.69  E-value=7.4e-17  Score=160.16  Aligned_cols=243  Identities=13%  Similarity=0.080  Sum_probs=135.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceec-cchhhhhhhhhhh---hccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFS-RASYLLSLLRPHI---YKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d-~g~~~~~~~~~~~---~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||++|+++|++|+|+|+++++||.+.+.. .+|+.++ .|++++....+.+   +++++..      .....
T Consensus         8 G~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~------~~~~~   80 (367)
T 1i8t_A            8 GSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVNDLVEF------NRFTN   80 (367)
T ss_dssp             CCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHTTSCB------CCCCC
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec-cCCceeeccCCceecCCCHHHHHHHHHhhhh------hhccc
Confidence            8999999999999999999999999999999999887 5799885 8988865544443   3344321      11111


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhccc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRG  156 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (523)
                      ... ...+      |+.+.++.+...+...+....+.   .+.++...   ...   .. ...                 
T Consensus        81 ~~~-~~~~------g~~~~~p~~~~~~~~l~~~~~~~---~~~~~l~~---~~~---~~-~~~-----------------  126 (367)
T 1i8t_A           81 SPL-AIYK------DKLFNLPFNMNTFHQMWGVKDPQ---EAQNIINA---QKK---KY-GDK-----------------  126 (367)
T ss_dssp             CCE-EEET------TEEEESSBSHHHHHHHHCCCCHH---HHHHHHHH---HTT---TT-CCC-----------------
T ss_pred             cce-EEEC------CeEEEcCCCHHHHHHHhccCCHH---HHHHHHHH---Hhh---cc-CCC-----------------
Confidence            111 1112      66666666654433333222211   11111111   100   00 000                 


Q ss_pred             cHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh--hccCCCCCCCcchHHHH-HHHHhhc-ccCCCCce-eecCCCHHH
Q psy893          157 EMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG--LIGAMVSPHSPSTSYVL-LHHVMGG-AEGVKGAW-AYPEGGMGA  231 (523)
Q Consensus       157 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~-~~~~gG~~~  231 (523)
                              ...|+.+++.+.+.++..+.++....  .++  .+|.+.++.+.. +...... .....+.| ++|+||+++
T Consensus       127 --------~~~s~~~~~~~~~g~~~~~~~~~p~~~~~~~--~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~  196 (367)
T 1i8t_A          127 --------VPENLEEQAISLVGEDLYQALIKGYTEKQWG--RSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTK  196 (367)
T ss_dssp             --------CCCSHHHHHHHHHHHHHHHHHTHHHHHHHHS--SCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHH
T ss_pred             --------CCccHHHHHHHHHhHHHHHHHHHHHHhhhhC--CChHHcCHHHHhhceeeeccccccccchhhcccCCCHHH
Confidence                    01244445544444333333332222  122  244433322210 0000000 00113344 389999999


Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCC
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDY  311 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  311 (523)
                      ++++|++     |++|++|++|.+|..   .    |     ++.+|+||+|+|+..++ ++            .+.+++|
T Consensus       197 l~~~l~~-----g~~i~l~~~V~~i~~---~----v-----~~~~D~VV~a~p~~~~~-~~------------~l~~l~y  246 (367)
T 1i8t_A          197 LIEKMLE-----GVDVKLGIDFLKDKD---S----L-----ASKAHRIIYTGPIDQYF-DY------------RFGALEY  246 (367)
T ss_dssp             HHHHHHT-----TSEEECSCCGGGSHH---H----H-----HTTEEEEEECSCHHHHT-TT------------TTCCCCE
T ss_pred             HHHHHhc-----CCEEEeCCceeeech---h----h-----hccCCEEEEeccHHHHH-HH------------hhCCCCC
Confidence            9999987     689999999988851   1    1     13589999999998853 22            1334556


Q ss_pred             CCCeEEEEEecCCC
Q psy893          312 ASPVTKINVALKSI  325 (523)
Q Consensus       312 ~~~~~~v~~~~~~~  325 (523)
                      . +...+.+.++..
T Consensus       247 ~-s~~~v~~~~d~~  259 (367)
T 1i8t_A          247 R-SLKFETERHEFP  259 (367)
T ss_dssp             E-EEEEEEEEESSS
T ss_pred             c-eEEEEEEEeccc
Confidence            4 667777777753

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.61  E-value=2.6e-16  Score=158.15  Aligned_cols=246  Identities=13%  Similarity=0.084  Sum_probs=136.4

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcceeeeccc-CCcee-ccchhhhhhhhhh---hhccccccccCceEeec
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAAVTEEII-PGFQF-SRASYLLSLLRPH---IYKDLELKKHGLKLLTR   74 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~-~G~~~-d~g~~~~~~~~~~---~~~~lgl~~~g~~~~~~   74 (523)
                      |||++||+||++|+++ |++|+|+|+++++||++.+.... +|+.+ +.|++++....+.   +++++++-      ...
T Consensus        14 GaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~------~~~   87 (399)
T 1v0j_A           14 GSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDF------TDY   87 (399)
T ss_dssp             CCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCCB------CCC
T ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhhh------hcc
Confidence            8999999999999999 99999999999999999998732 78887 5898886554553   44555431      111


Q ss_pred             CCCCcccCCCCcccCCCCceeecCCHHHHHHHHHcc-ChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHh
Q psy893           75 DPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARF-SVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFT  153 (523)
Q Consensus        75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (523)
                      ....+ ...      +|+.+.++.+...+...+... .+.+   ...   .+...   ....   ...            
T Consensus        88 ~~~~~-~~~------~G~~~~~p~~~~~~~~l~~~~~~~~~---~~~---~l~~~---~~~~---~~~------------  136 (399)
T 1v0j_A           88 RHRVF-AMH------NGQAYQFPMGLGLVSQFFGKYFTPEQ---ARQ---LIAEQ---AAEI---DTA------------  136 (399)
T ss_dssp             CCCEE-EEE------TTEEEEESSSHHHHHHHHTSCCCHHH---HHH---HHHHH---GGGS---CTT------------
T ss_pred             ccceE-EEE------CCEEEeCCCCHHHHHHHhcccCCHHH---HHH---HHHHH---hhcc---CCC------------
Confidence            11101 111      266667666654332222211 1111   110   11111   1110   000            


Q ss_pred             ccccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh--hccCCCCCCCcchHHHH-HHHHhhc-ccCCCCce-eecCCC
Q psy893          154 RRGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG--LIGAMVSPHSPSTSYVL-LHHVMGG-AEGVKGAW-AYPEGG  228 (523)
Q Consensus       154 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~-~~~~gG  228 (523)
                                 ...|+.+++.+.+.++.++.++....  .++  ..|.+.++.+.. +...... .......+ ++|+||
T Consensus       137 -----------~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~--~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG  203 (399)
T 1v0j_A          137 -----------DAQNLEEKAISLIGRPLYEAFVKGYTAKQWQ--TDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDG  203 (399)
T ss_dssp             -----------C----CCHHHHHHCHHHHHHHTHHHHHHHHT--SCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTH
T ss_pred             -----------CcccHHHHHHHHHhHHHHHHHHHHHHHhhcC--CChhhcChHhhhcceeEeccccchhhhhhccccccc
Confidence                       01244455555555554444443322  122  233333322210 0000000 00011123 389999


Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEE-EcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHh
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEI-KAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQ  307 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~-~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~  307 (523)
                      +++|+++|++   +.|++|++|++|++|..   .    |  +  ++ .||+||+|+|+..++ ++.            ++
T Consensus       204 ~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~----v--~--~~~~aD~VI~t~p~~~l~-~~~------------l~  256 (399)
T 1v0j_A          204 YTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q----L--R--PGSPAAPVVYTGPLDRYF-DYA------------EG  256 (399)
T ss_dssp             HHHHHHHHTC---STTEEEECSCCHHHHHH---H----H--T--TTSTTCCEEECSCHHHHT-TTT------------TC
T ss_pred             HHHHHHHHHh---cCCeEEEECCchhhhhh---h----h--h--hcccCCEEEECCcHHHHH-hhh------------hC
Confidence            9999999988   56899999999999863   1    1  1  34 699999999999853 441            23


Q ss_pred             cCCCCCCeEEEEEecCC
Q psy893          308 SIDYASPVTKINVALKS  324 (523)
Q Consensus       308 ~~~~~~~~~~v~~~~~~  324 (523)
                      ++.|. ++..+.+.++.
T Consensus       257 ~l~y~-s~~~~~~~~~~  272 (399)
T 1v0j_A          257 RLGWR-TLDFEVEVLPI  272 (399)
T ss_dssp             CCCEE-EEEEEEEEESS
T ss_pred             CCCcc-eEEEEEEEEcc
Confidence            45554 55667777764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.47  E-value=2.9e-14  Score=142.25  Aligned_cols=239  Identities=12%  Similarity=0.095  Sum_probs=137.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeeccc-CCcee-ccchhhhhhhhhhh---hccccccccCceEeecC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEII-PGFQF-SRASYLLSLLRPHI---YKDLELKKHGLKLLTRD   75 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~-~G~~~-d~g~~~~~~~~~~~---~~~lgl~~~g~~~~~~~   75 (523)
                      |||++||++|+.|+++|++|+|+|+++++||++.+.... +|+.+ |.|++++....+.+   +++++.      +....
T Consensus        10 G~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~------~~~~~   83 (384)
T 2bi7_A           10 GAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE------MMPYV   83 (384)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC------EEECC
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhh------hcccc
Confidence            899999999999999999999999999999999987622 78886 89998876555544   444432      11111


Q ss_pred             CCCcccCCCCcccCCCCceeecCCHHHHHHHHHcc-ChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhc
Q psy893           76 PRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARF-SVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTR  154 (523)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (523)
                      ...+ ...+      |+.+.++.+...+...+... .+.+   ..++   +...       ......             
T Consensus        84 ~~~~-~~~~------g~~~~~P~~~~~~~~l~~~~~~~~~---~~~~---l~~~-------~~~~~~-------------  130 (384)
T 2bi7_A           84 NRVK-ATVN------GQVFSLPINLHTINQFFSKTCSPDE---ARAL---IAEK-------GDSTIA-------------  130 (384)
T ss_dssp             CCEE-EEET------TEEEEESCCHHHHHHHTTCCCCHHH---HHHH---HHHH-------SCCSCS-------------
T ss_pred             cceE-EEEC------CEEEECCCChhHHHHHhcccCCHHH---HHHH---HHHh-------hhccCC-------------
Confidence            1111 1112      66667777654433222211 1111   1111   1111       000000             


Q ss_pred             cccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhh--hccCCCCCCCcchHHHH-HHHHhh-cccCCCCce-eecCCCH
Q psy893          155 RGEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDG--LIGAMVSPHSPSTSYVL-LHHVMG-GAEGVKGAW-AYPEGGM  229 (523)
Q Consensus       155 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~g~~-~~~~gG~  229 (523)
                                ...++.+++.+.+.++.++.++....  .++  ..|.+.++.+.. +..... ...+..+.| .+|+||+
T Consensus       131 ----------~~~sl~e~~~~~~g~~~~~~~~~p~~~~~~~--~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~  198 (384)
T 2bi7_A          131 ----------DPQTFEEEALRFIGKELYEAFFKGYTIKQWG--MQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGY  198 (384)
T ss_dssp             ----------SCCBHHHHHHHHHCHHHHHHHTHHHHHHHHS--SCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHH
T ss_pred             ----------CCcCHHHHHHHhhcHHHHHHHHHHHHHHHhC--CCHHHhCHHHHhccccccccccccccccccEEECcCH
Confidence                      11355666666655555554443222  122  344443332210 000000 001112344 3899999


Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceee-EEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhc
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVT-EITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQS  308 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~-~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~  308 (523)
                      ++++++|++   +.|++|++|++|. +|..                .+|+||+|+++..++ +++            +.+
T Consensus       199 ~~l~~~l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p~~~~~-~~~------------lg~  246 (384)
T 2bi7_A          199 TQMIKSILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGPLDAFY-GYQ------------YGR  246 (384)
T ss_dssp             HHHHHHHHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSCHHHHT-TTT------------TCC
T ss_pred             HHHHHHHHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCCHHHHH-Hhh------------cCC
Confidence            999999987   4689999999998 6631                299999999999864 432            234


Q ss_pred             CCCCCCeEEEEEecC
Q psy893          309 IDYASPVTKINVALK  323 (523)
Q Consensus       309 ~~~~~~~~~v~~~~~  323 (523)
                      +.|. +...+.+.++
T Consensus       247 l~y~-s~~~v~~~~d  260 (384)
T 2bi7_A          247 LGYR-TLDFKKFTYQ  260 (384)
T ss_dssp             CCEE-EEEEEEEEEE
T ss_pred             CCcc-eEEEEEEEeC
Confidence            5555 5666677776

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.42  E-value=1.1e-12  Score=129.03  Aligned_cols=66  Identities=32%  Similarity=0.435  Sum_probs=54.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC-CCCCcceeeecc---------cCCceeccchhhhhhhhh---hhhccccccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR-HVLGGAAVTEEI---------IPGFQFSRASYLLSLLRP---HIYKDLELKK   66 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~s~~~---------~~G~~~d~g~~~~~~~~~---~~~~~lgl~~   66 (523)
                      |||++||+||+.|+++|++|+|||++ +++||++.+...         ..|+.+|.|++++....+   .+++++|+..
T Consensus        51 GAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~lGl~~  129 (376)
T 2e1m_A           51 GAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALIDKLGLKR  129 (376)
T ss_dssp             CCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHHHHcCCCc
Confidence            89999999999999999999999999 999999998762         257889999877544333   4677777653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.42  E-value=1.1e-13  Score=137.45  Aligned_cols=240  Identities=13%  Similarity=0.109  Sum_probs=135.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCcee-ccchhhhhhhhh---hhhccccccccCceEeecCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF-SRASYLLSLLRP---HIYKDLELKKHGLKLLTRDP   76 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~-d~g~~~~~~~~~---~~~~~lgl~~~g~~~~~~~~   76 (523)
                      |||++||+||+.|+++|++|+|+|+++++||.+.+....+|+.+ +.|++++....+   .++++++.      +.....
T Consensus        36 GaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~------~~~~~~  109 (397)
T 3hdq_A           36 GAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTE------WRPYQH  109 (397)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCC------EEECCC
T ss_pred             CccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhh------cccccc
Confidence            89999999999999999999999999999999988653578864 999988654444   34455542      111110


Q ss_pred             CCcccCCCCcccCCCCceeecCCHHHHHHHHH-ccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcc
Q psy893           77 RSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIA-RFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRR  155 (523)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (523)
                      . .....+      |+.+.++.+...+...+. .+.+.   ....+..          . ...+..              
T Consensus       110 ~-~~~~~~------g~l~~lP~~~~~~~~l~~~~~~~~---~~~~~l~----------~-~~~~~~--------------  154 (397)
T 3hdq_A          110 R-VLASVD------GQLLPIPINLDTVNRLYGLNLTSF---QVEEFFA----------S-VAEKVE--------------  154 (397)
T ss_dssp             B-EEEEET------TEEEEESCCHHHHHHHHTCCCCHH---HHHHHHH----------H-HCCCCS--------------
T ss_pred             c-ceEEEC------CEEEEcCCChHHHHHhhccCCCHH---HHHHHHh----------h-cccCCC--------------
Confidence            0 001112      777777776543322221 11111   1111111          0 000000              


Q ss_pred             ccHHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhh--ccCCCCCCCcchHHHHHHHHhhcc--c--CCCCce-eecCCC
Q psy893          156 GEMKDVYSLLTCSAFSILNDWFESEPLKATLLTDGL--IGAMVSPHSPSTSYVLLHHVMGGA--E--GVKGAW-AYPEGG  228 (523)
Q Consensus       156 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~g~~-~~~~gG  228 (523)
                               ...|+.+|+.+.+.....+.++.....  ++  ..+.+.++.+.  ..+-...  +  +..+.+ ++|+||
T Consensus       155 ---------~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~--~~~~~Lsa~~~--~Rvp~~~~~d~~yf~~~~qg~P~gG  221 (397)
T 3hdq_A          155 ---------QVRTSEDVVVSKVGRDLYNKFFRGYTRKQWG--LDPSELDASVT--ARVPTRTNRDNRYFADTYQAMPLHG  221 (397)
T ss_dssp             ---------SCCBHHHHHHHHHHHHHHHHHTHHHHHHHHS--SCGGGSBTTTG--GGSCCCSSCCCBSCCCSEEEEETTC
T ss_pred             ---------CCcCHHHHHHHhcCHHHHHHHHHHHhCchhC--CCHHHHHHHHH--HhcCcccccCccchhhhheeccCCC
Confidence                     013555565555554444444443321  22  34444433211  0000000  0  111233 379999


Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhc
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQS  308 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~  308 (523)
                      +.+|+++|++   ..|++|++|++|.+|     +         .++.+|+||+|+|....+ +.            .+.+
T Consensus       222 y~~l~e~l~~---~~g~~V~l~~~v~~~-----~---------~~~~~d~vI~T~P~d~~~-~~------------~~g~  271 (397)
T 3hdq_A          222 YTRMFQNMLS---SPNIKVMLNTDYREI-----A---------DFIPFQHMIYTGPVDAFF-DF------------CYGK  271 (397)
T ss_dssp             HHHHHHHHTC---STTEEEEESCCGGGT-----T---------TTSCEEEEEECSCHHHHT-TT------------TTCC
T ss_pred             HHHHHHHHHh---ccCCEEEECCeEEec-----c---------ccccCCEEEEcCCHHHHH-HH------------hcCC
Confidence            9999999876   569999999999743     1         134689999999987743 11            1234


Q ss_pred             CCCCCCeEEEEEecCCC
Q psy893          309 IDYASPVTKINVALKSI  325 (523)
Q Consensus       309 ~~~~~~~~~v~~~~~~~  325 (523)
                      +.|. |+..+.++++..
T Consensus       272 L~yr-sl~~~~~~~~~~  287 (397)
T 3hdq_A          272 LPYR-SLEFRHETHDTE  287 (397)
T ss_dssp             CCEE-EEEEEEEEESSS
T ss_pred             CCCc-eEEEEEEEeccc
Confidence            5554 677788888754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.09  E-value=8.5e-10  Score=109.31  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.++++|++|+++++|++|..++ ++++.|+ .+|  .+++||.||+|++.+.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRP-EGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CceEEEEECCCceeEEEeCEEEECCCcch
Confidence            46899999999999999999999999999987 5544577 666  4899999999999986

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.99  E-value=4.3e-09  Score=104.74  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|.+.++++|++|+++++|++|..++ ++ +.|+ .+| ++.||+||+|++++.
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVD-GA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEET-TE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC-Ce-EEEEeCCC-EEEcCEEEECCChhH
Confidence            46899999999999999999999999999887 55 5677 555 899999999999986

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.95  E-value=1.6e-08  Score=101.00  Aligned_cols=63  Identities=16%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-..|.+.+.+.|++++++++|+.+..++ ++++++.  .+++  +++||.||-|-+.+..+.+.+.
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g  169 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAG  169 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeecc-ceeeeeeecccccceEEEEeEEEeCCccccHHHHHcC
Confidence            566778888888999999999999999988 7777776  4554  6889999999888765555543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.93  E-value=7.3e-09  Score=105.31  Aligned_cols=63  Identities=21%  Similarity=0.264  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCc---eeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQ---TVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~---~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...++..|.+.++++|++|++++   +|++|..++ +++++|+ .+|+++.||.||+|++.+.  ..|++
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~-~~v~gV~t~~G~~i~Ad~VV~AtG~~s--~~l~~  226 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN-NDVKGAVTADGKIWRAERTFLCAGASA--GQFLD  226 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET-TEEEEEEETTTEEEECSEEEECCGGGG--GGTSC
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC-CeEEEEEECCCCEEECCEEEECCCCCh--hhhcC
Confidence            56889999999999999999999   999999987 8888888 7888899999999999996  46654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.83  E-value=3.4e-08  Score=105.98  Aligned_cols=67  Identities=13%  Similarity=0.208  Sum_probs=54.7

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ++.+|   ...++..|.+.+++.|++|+++++|++|..++ +++ .|+ .+|+++.||.||+|++.+.  ..+..
T Consensus       408 ~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s--~~l~~  478 (676)
T 3ps9_A          408 YPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQI--SRFSQ  478 (676)
T ss_dssp             ETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGG--GCSTT
T ss_pred             ecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcch--hcccc
Confidence            44444   36899999999999999999999999999987 654 577 6777899999999999985  34543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.82  E-value=3.9e-08  Score=105.62  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             ecCCC---HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-EEEcCEEEEcCChHH
Q psy893          224 YPEGG---MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-EIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-~~~ad~vI~a~~~~~  287 (523)
                      ++.+|   ...+++.|.+.+++.|++|+++++|++|..++ +++ .|+ .+|+ ++.||.||+|++.+.
T Consensus       403 ~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          403 YPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRID-SQW-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             ETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS-SSE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             ecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC-CeE-EEEeCCCcEEEECCEEEECCCcch
Confidence            55555   36899999999999999999999999999987 664 576 6776 799999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.81  E-value=5.7e-08  Score=96.71  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+.+++|++|..++ +++++|+ .+| +++||.||+|++.+.
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN-NEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEEC-CEEEEEEECCc-EEECCEEEECcchhH
Confidence            46889999999999999999999999999987 7777787 555 899999999999885

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.78  E-value=4e-08  Score=98.65  Aligned_cols=57  Identities=28%  Similarity=0.345  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+++++|++|..++ +++++|+ .+| ++.||.||+|++.+.
T Consensus       173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDG-EKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-CEEEEEEeCCc-eEECCEEEECCchhH
Confidence            34789999999999999999999999999987 7777787 566 799999999999875

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.78  E-value=1.6e-07  Score=97.09  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcC-EEEEcCChHH
Q psy893          227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAK-YVLSNTTAKC  287 (523)
Q Consensus       227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad-~vI~a~~~~~  287 (523)
                      +|...+.+.|.+.+++.|++|+++++|++|..++++++++|+  .+|+  ++.|| .||+|++...
T Consensus       199 ~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          199 GGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             CTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            344489999999999999999999999999998338999988  4554  58996 8999988764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.76  E-value=8.8e-08  Score=94.92  Aligned_cols=61  Identities=21%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...+++.|.+.+++.|++|+.+++|++|..++ +++ .|+ .+| +++||.||+|++++.  ..|++
T Consensus       148 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~g-~~~a~~vV~a~G~~s--~~l~~  209 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD-DGV-TIETADG-EYQAKKAIVCAGTWV--KDLLP  209 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SSE-EEEESSC-EEEEEEEEECCGGGG--GGTST
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcC-CEE-EEEECCC-eEEcCEEEEcCCccH--Hhhcc
Confidence            35788999999999999999999999999876 554 466 556 599999999999986  46654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.73  E-value=2.3e-08  Score=104.47  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---C--eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g--~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|++.++++|++|+.+++|++|..++ +++++|+ .+   |  .+++||.||+|++++.
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~-g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            46889999999999999999999999999987 8888887 43   4  4789999999999986

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.70  E-value=2.9e-07  Score=96.54  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++++|+ .  +|+  ++.||.||+|++...
T Consensus       249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            4578899999999999999999999999987536787887 4  676  689999999998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.70  E-value=2.8e-07  Score=101.19  Aligned_cols=57  Identities=28%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+...|.+.++++|++|+.+++|++|..++ +++++|+ .+| +++||+||+|++.+.
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEeC-CEEEEEEECCc-EEECCEEEECCccch
Confidence            45889999999999999999999999999877 7777777 445 899999999999986

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.68  E-value=2.9e-07  Score=91.77  Aligned_cols=56  Identities=18%  Similarity=0.187  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+.+++|++|..++ +++ .|+.++.+++||.||+|++.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecC-CeE-EEEeCCCEEEeCEEEEecCccH
Confidence            5888999999999999999999999999876 554 4664444799999999999986

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.65  E-value=8.8e-07  Score=92.98  Aligned_cols=57  Identities=21%  Similarity=0.136  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~  286 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|+ .  +|+  ++.||.||+|++..
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            578899999999999999999999999986537788887 4  676  68999999999875

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.65  E-value=2.3e-07  Score=93.07  Aligned_cols=61  Identities=15%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++......+.+.|.+.+++.|++|+++++|++|..++ +. +.|+ .+| +++||.||+|++.+.
T Consensus       126 ~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~-~~-~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-SG-FRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TE-EEEEETTE-EEEESEEEECCCCSS
T ss_pred             eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CE-EEEEECCc-EEEeeEEEECCCCcc
Confidence            5666677899999999999999999999999999876 54 4566 555 899999999999764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.63  E-value=1.5e-07  Score=93.61  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++ .|+ .+| ++.||.||+|++.+.
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG-EAL-FIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS-SSE-EEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC-CEE-EEEcCCc-eEEcCEEEECCChhH
Confidence            6789999999999999999999999999877 666 676 455 899999999999875

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.60  E-value=2.5e-07  Score=94.04  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          228 GMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       228 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ....+.+.|.+.+++.|++|+++++|++|..++ +++++|+ .+|++++||.||+|++...
T Consensus       132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            356889999999999999999999999999876 7777888 7777799999999998765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.60  E-value=2.4e-08  Score=94.37  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=41.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccch
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRAS   48 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~   48 (523)
                      |||++||+||+.|+++|++|+||||++.+||++.+.. .++..+|.|.
T Consensus         9 GaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~   55 (336)
T 3kkj_A            9 GTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGA   55 (336)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSC
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCc
Confidence            8999999999999999999999999999999998765 4566666553

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.57  E-value=1.5e-06  Score=91.18  Aligned_cols=59  Identities=24%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++++|+ .  +|+  ++.||.||+|++...
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3578899999999999999999999999876436788887 4  675  689999999998643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.57  E-value=4.4e-07  Score=90.78  Aligned_cols=57  Identities=30%  Similarity=0.251  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+...|.+.+++.|++|+++++|++|..++ +++ .|+.++.+++||.||+|++.+.
T Consensus       152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGATLRAGETVTELVPDA-DGV-SVTTDRGTYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEESSCEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC-CeE-EEEECCCEEEcCEEEEcCCcCh
Confidence            35788899999999999999999999999876 554 3553334799999999999874

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.55  E-value=3.9e-07  Score=95.41  Aligned_cols=58  Identities=21%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...++..+++.+.+.|++|+.+++|++|..++ +++++|+ .   +|+  +++||.||+|++++.
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~-~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC-CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            35788889999999999999999999999987 7777777 3   454  689999999999996

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.46  E-value=5.3e-07  Score=93.17  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|+ .+|+++.||.||+|++...
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESS-SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            5788899999999999999999999999987 7888888 7888899999999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.42  E-value=1.4e-06  Score=88.58  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEE---------------CCCCCeEEEE-eCCeEE--EcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITL---------------DSDKRASGVV-TNGLEI--KAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~---------------~~~~~~~~v~-~~g~~~--~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+.+++|++|..               ++ +++++|+ .+| ++  .||.||+|++++.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~-~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE-ARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC-EEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC-CceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            458999999999999999999999999998               55 6666777 566 68  9999999999986

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.41  E-value=4e-06  Score=83.72  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEEC----CCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLD----SDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~----~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ++......+.+.|.+.+++.|++|+++++|++|..+    + ++ +.|+.++.+++||.||+|++...
T Consensus       103 ~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~-~~-~~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK-VR-FVLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS-CC-EEEEETTEEEEESEEEECCCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC-Ce-EEEEECCCEEECCEEEECCCCcc
Confidence            443345678899999999999999999999999976    4 44 34663333899999999998765

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.23  E-value=3.3e-05  Score=80.98  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC-CCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD-SDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..+ + +++++|. .   +|+  ++.|+.||+|++...
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            578899999999999999999999999986 5 7888877 3   454  588999999998765

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.23  E-value=2.8e-06  Score=84.96  Aligned_cols=64  Identities=8%  Similarity=0.168  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeE-EEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRAS-GVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~-~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++. |++|+++++|++|..++ ++++ .|+ .+|++++||.||.|.+.+...++.+.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  173 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDE-RHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL  173 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEECT-TSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC-CceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence            47788889999888 89999999999999887 6653 566 77888999999999998876666664

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.21  E-value=2.5e-05  Score=80.41  Aligned_cols=57  Identities=16%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...++..|.+.+.++|++|+.+++|++|..++  ++++|+ .   +|+  +++||.||+|++++.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            46899999999999999999999999999864  456676 3   565  789999999999986

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.18  E-value=1.2e-05  Score=81.00  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++|+.+++|++|..++++..+.|+ .+|+  +++||.||.|.+.+..+.+++.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g  173 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFG  173 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcC
Confidence            467788888888889999999999999987623233455 5776  6999999999998866666654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.15  E-value=2.5e-05  Score=82.79  Aligned_cols=57  Identities=18%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+.|++|+.++.|.+|..++ +++++|. .   +|+  .+.|+.||+|++...
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4788999999999999999999999999877 8888876 3   465  489999999998765

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.15  E-value=1.8e-05  Score=82.37  Aligned_cols=63  Identities=8%  Similarity=0.176  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC----CeEEEE-eCC---eEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDK----RASGVV-TNG---LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~----~~~~v~-~~g---~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+...|.+.+++.|++|+++++|++|..++ +    .++ |+ .++   .+++||.||.|.+.+..+++.+.
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~~~v~-v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lg  190 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHD-DDAGAGVT-ARLAGPDGEYDLRAGYLVGADGNRSLVRESLG  190 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEEC-GGGCSEEE-EEEEETTEEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCccccEE-EEEEcCCCeEEEEeCEEEECCCCcchHHHHcC
Confidence            4677888999999999999999999999887 4    443 44 554   68999999999999876677664

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.14  E-value=3e-06  Score=87.71  Aligned_cols=63  Identities=17%  Similarity=0.401  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHHHHHhhC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +++++|+   .+|+  +++||.||.|.+.+..+.+.+
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~l  178 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFEG-ERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAV  178 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEET-TEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC-CEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHc
Confidence            3678888999989999999999999999987 7776666   3564  789999999999876545554

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.14  E-value=4.4e-06  Score=85.04  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+.+.|++|+++++|++|..++ +++++|+ .   +|+  +++||.||.|.+.+....+.+.
T Consensus       100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~  169 (453)
T 3atr_A          100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLP  169 (453)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcC
Confidence            3677788888888999999999999999887 7777676 3   776  7899999999998865555554

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.11  E-value=5.7e-05  Score=79.42  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+.|++|+.++.|.+|..++ +++++|. .   +|+  .+.|+.||+|++...
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4788999999999999999999999999877 8888887 3   564  688999999998765

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.09  E-value=1.2e-05  Score=79.78  Aligned_cols=60  Identities=15%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++|+++++|++|.. + +   .|+ .+|++++||.||.|.+.+....+++.
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~  167 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP-V-G---RLTLQTGEVLEADLIVGADGVGSKVRDSIG  167 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T---EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C---EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence            46788888889889999999999999987 4 5   466 77888999999999998876666654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.07  E-value=3.1e-05  Score=81.04  Aligned_cols=64  Identities=13%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CC--eEEEcCEEEEcCChHHHHHhhC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NG--LEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g--~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      -..+...|.+.+++.|++|+.+++|++|..++ +.+++|+ . +|  .+++||.||.|.+.+..+.+.+
T Consensus       127 r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~l  194 (591)
T 3i3l_A          127 REEFDKLLLDEARSRGITVHEETPVTDVDLSD-PDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKL  194 (591)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCEEEEECCS-TTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHc
Confidence            34788889999999999999999999999875 6667777 5 77  5799999999999876554444

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.06  E-value=4.4e-05  Score=76.63  Aligned_cols=57  Identities=25%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|++|++++.|++|..++ +++.+|+ .+|+++.||.||++++..
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEESSSCEEECSEEEECSCCE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeCCCCEEEcCEEEECCCCc
Confidence            45788889999999999999999999999877 7887888 889899999999998864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.04  E-value=4e-05  Score=79.53  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEE-CCCC------CeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITL-DSDK------RASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~-~~~~------~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++ .|++|++++.|++|.. ++ +      ++++|. .   +|+  ++.|+.||+|++...
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3677788888888 6999999999999998 44 5      788887 4   575  689999999998765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.04  E-value=4.4e-06  Score=83.75  Aligned_cols=60  Identities=12%  Similarity=0.136  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ..+.+.|.+.+++  ++|+++++|++|..++ +++ .|+ .+|++++||.||.|.+.+...++.+
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEEDA-DGV-TVWFTDGSSASGDLLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEecC-CcE-EEEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence            4667777777766  8899999999999887 654 466 7888999999999999875444544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.03  E-value=2.3e-05  Score=82.14  Aligned_cols=62  Identities=23%  Similarity=0.415  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e------CC---------eEEEcCEEEEcCChHHHHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T------NG---------LEIKAKYVLSNTTAKCTLL  290 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~------~g---------~~~~ad~vI~a~~~~~~~~  290 (523)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++++|+ .      +|         .+++||.||.|.+.+..+.
T Consensus       143 r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr  220 (584)
T 2gmh_A          143 LGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLA  220 (584)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHH
Confidence            3478889999999999999999999999987646777777 4      33         5799999999999875433

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.03  E-value=3.9e-05  Score=78.88  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe---EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL---EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~---~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ ++++ |+ .+++   +++||.||.|.+.+...++++.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  173 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDEG-DHVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG  173 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEECS-SCEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence            3677888888888999999999999999887 6654 55 5553   7899999999999877777764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.03  E-value=4.2e-06  Score=83.78  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|++++++++|++|..++ +++.+|+ .+|+++.||.||++++..
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~dG~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLSDGNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTSCEEECSEEEECCCEE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeCCCCEEEcCEEEECcCCc
Confidence            45788899999999999999999999999877 7787888 889899999999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.01  E-value=2.4e-05  Score=80.47  Aligned_cols=63  Identities=16%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe---EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL---EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~---~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +.++ |+ .+++   +++||.||.|.+.+...++++.
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  172 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDDG-AGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG  172 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEET-TEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEcC-CeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence            3677788888888999999999999999887 5554 55 5553   7899999999999877777764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.99  E-value=4e-05  Score=79.62  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHCCc--EEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGA--QLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+.+.+.+.+++.|.  +++++++|+++..++++..+.|+ .+|++++||+||+|++..
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            444555666667776  79999999999987634455677 788889999999999954

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.99  E-value=5.3e-05  Score=77.28  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+.+++| +|..++ +++.+|.  .++.++.||.||+|++...
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~-~~v~Gv~v~~~~g~~~a~~VVlAtGg~~  176 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD-GKVTGFVTEKRGLVEDVDKLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEET-TEEEEEEETTTEEECCCSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC-CEEEEEEEEeCCCeEEeeeEEECCCCCc
Confidence            478888999888889999999999 998877 7787776  2334678999999999875

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.97  E-value=2.3e-05  Score=78.20  Aligned_cols=60  Identities=13%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+.+.|.+.+  .|++|+++++|++|..++ ++++ |+ .+|++++||.||.|.+.+...++++.
T Consensus       100 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          100 SIYGGLYELF--GPERYHTSKCLVGLSQDS-ETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHHH--CSTTEETTCCEEEEEECS-SCEE-EEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecC-CEEE-EEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            4445555544  379999999999999887 6554 66 78888999999999998876555543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.94  E-value=4.2e-05  Score=79.29  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCc--EEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGA--QLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|+  +|+++++|++|..++++..+.|+ .+|+++.||.||+|++...
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence            455556666667776  89999999999987634455677 7888899999999999643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.93  E-value=3.9e-05  Score=79.65  Aligned_cols=56  Identities=18%  Similarity=0.185  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHCCc--EEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGA--QLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++++.+.|+ .+|++++||.||+|++..
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPL  146 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCC
Confidence            344445555556665  79999999999986534455677 788899999999999954

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.93  E-value=0.00013  Score=76.67  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+.+.| ++|+.++.|++|..++ +++++|.    .+|+  ++.|+.||+|++...
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            478899999998888 9999999999999887 8877775    2566  689999999999865

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.93  E-value=2.8e-05  Score=77.45  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+.+.|++|+++++|++|..++++.+ .|+  .+|+  +++||.||.|.+.+...++.+.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~  170 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHGISRQSIP  170 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCCCcHHHHhcC
Confidence            35667788888888999999999999987641333 454  5787  7999999999998865566654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.91  E-value=4.1e-05  Score=79.91  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCC-eEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNG-LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g-~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ +.++ |+   .+| ++++||.||.|.+.+..+++++.
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-~~v~-v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG  214 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDA-EAVE-VTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA  214 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBCS-SCEE-EEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CeEE-EEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence            4677888888888899999999999999887 5554 44   366 68999999999998876777764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.79  E-value=0.00032  Score=74.34  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHC-Cc-EEEeCceeeEEEECCCC---CeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQAS-GA-QLFTSQTVTEITLDSDK---RASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~-~i~~~~~V~~I~~~~~~---~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+...|.+.+++. |+ +|+.++.|++|..++ +   ++++|.    .+|+  .+.|+.||+|++...
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~-~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDN-NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECT-TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcC-CccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            4667777888787 99 999999999999887 6   888876    2454  689999999998765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.68  E-value=2.1e-05  Score=76.24  Aligned_cols=34  Identities=32%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHHHH--cCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR--AGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||++|++  .|++|+|+||++.+||.+.
T Consensus        72 GaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           72 GAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            899999999999985  4999999999999999874

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.62  E-value=0.00029  Score=73.29  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++ .|++| +++.|++|..++ +++++|+ .+|.++.||.||+|++...
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVKN-NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            4677888888888 48999 678999999987 8888888 7888999999999999753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.56  E-value=0.00033  Score=73.08  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++ .|++| +++.|+.|..++ +++++|+ .+|.++.||.||+|++.+.
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~-g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVEN-DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEESS-SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC-CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            4677888888888 59999 678999999887 8888888 7888899999999999764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.47  E-value=0.0016  Score=66.93  Aligned_cols=58  Identities=21%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHCC-cEEEeCceeeEEEECCC-CCeEEEE-e--CC-----eEEEcCEEEEcCChHHH
Q psy893          231 AVSQALARSAQASG-AQLFTSQTVTEITLDSD-KRASGVV-T--NG-----LEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~-~~~~~v~-~--~g-----~~~~ad~vI~a~~~~~~  288 (523)
                      ....++.+.+++.| ++|++++.|++|..+++ +++++|+ .  +|     .++.|+.||+|++...+
T Consensus       222 s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s  289 (504)
T 1n4w_A          222 SLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGS  289 (504)
T ss_dssp             CTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHH
T ss_pred             CHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCC
Confidence            33445555566675 99999999999999852 3688888 4  56     36789999999998865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.26  E-value=0.00016  Score=69.29  Aligned_cols=33  Identities=36%  Similarity=0.648  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+|++.|++|+|+||. .+||.|.
T Consensus        13 G~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A           13 GAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            89999999999999999999999985 5788763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00024  Score=72.88  Aligned_cols=56  Identities=27%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---C--eEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---G--LEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g--~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +.+ .|+ .+   |  +++.+|.||++++..
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSG-DGA-KVTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEE-EEEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeC-CEE-EEEEEecCCCceEEEEcCEEEEeeCCc
Confidence            35678889999999999999999999999876 443 344 32   5  579999999998854

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.08  E-value=0.00027  Score=67.69  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=26.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||+||.+|+++|++|+|+|++..
T Consensus        11 G~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A           11 GSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            8999999999999999999999999753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.08  E-value=0.00031  Score=67.78  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+++.+||...
T Consensus        14 G~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A           14 GGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            8999999999999999999999999999998763

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.06  E-value=0.00031  Score=71.15  Aligned_cols=34  Identities=38%  Similarity=0.535  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+++.+||...
T Consensus       129 GgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          129 GAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            8999999999999999999999999999999764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.06  E-value=0.0003  Score=67.13  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||+||.+|+++|++|+|+|++. +||.
T Consensus        13 GaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A           13 GAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            899999999999999999999999975 5654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.06  E-value=0.0022  Score=65.67  Aligned_cols=55  Identities=9%  Similarity=0.055  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC----eEEEcCEEEEcCCh
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG----LEIKAKYVLSNTTA  285 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g----~~~~ad~vI~a~~~  285 (523)
                      ...+.+.+.+.+++.|++|++|++|++|..+  +....+. .||    +++.||.||+|++.
T Consensus       271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~--~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEK--QLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEECSS--EEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhcceeeecCceEEEEeCC--ceEEEEEecCcccceeeeccCEEEEccCC
Confidence            3578888999999999999999999999643  2222333 455    36899999999873

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.03  E-value=0.00037  Score=67.89  Aligned_cols=55  Identities=20%  Similarity=0.112  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|++++++++|++|..++ +++.+|+ .+| ++.+|+||+|++.+.
T Consensus        77 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           77 EVLAYLAQYEQKYALPVLRPIRVQRVSHFG-ERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHHTTCCEECSCCEEEEEEET-TEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEECC-CcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            455666777778899999999999999886 5543377 666 899999999999765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.02  E-value=0.0003  Score=72.05  Aligned_cols=56  Identities=27%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ +++ .|+ .+|+++.+|.||++++...
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVP  288 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCc
Confidence            4678889999999999999999999999876 655 566 7888899999999998643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.00  E-value=0.00033  Score=71.37  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+||++.+||.|.
T Consensus        11 GgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A           11 GAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            8999999999999999999999999999999875

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.00  E-value=0.00041  Score=65.53  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-e---------CC-----eEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-T---------NG-----LEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~---------~g-----~~~~ad~vI~a~~~~  286 (523)
                      ..+...|.+.+.+ .|++++++++|++|..++ +++.+|+ .         +|     .+++||.||+|++..
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~  190 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence            3566677777765 699999999999999887 7777776 3         33     578999999999854

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.99  E-value=0.00039  Score=66.86  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|+++  |++|+|+|++..+||.+
T Consensus        86 GgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           86 GAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             CccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            8999999999999997  99999999999888754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.99  E-value=0.0004  Score=69.18  Aligned_cols=58  Identities=5%  Similarity=0.075  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      |-+.|.+.   .+.+|+++++|++++..+++++ .|+ .||++++||.||-|-+.+...++.+
T Consensus       114 L~~~L~~~---~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgADG~~S~vR~~l  172 (412)
T 4hb9_A          114 LKEILNKG---LANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGADGSNSKVRKQY  172 (412)
T ss_dssp             HHHHHHTT---CTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred             HHHHHHhh---ccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEECCCCCcchHHHh
Confidence            44444442   3567999999999988663544 477 8999999999999988876666554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.98  E-value=0.00037  Score=67.48  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus        12 G~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A           12 GAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            8999999999999999999999999999998763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.98  E-value=0.00038  Score=68.20  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~  286 (523)
                      .+.+.|.+.+++.|++++++++|++|..++ +++.+|+ .  +|  +++.+|.||++++..
T Consensus       203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          203 KTAHEVERARANGTIDVYLETEVASIEESN-GVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             HHHHSSHHHHHHTSEEEESSEEEEEEEEET-TEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             HHHHHHHHHhhcCceEEEcCcCHHHhccCC-CceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence            566677788888899999999999998876 6665666 4  67  578999999988744

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=96.97  E-value=0.00039  Score=66.43  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=30.9

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|+++  |++|+|+|+++.+||.+
T Consensus        72 G~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           72 GAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            8999999999999999  99999999999998754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.96  E-value=0.00044  Score=66.36  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|++  +||.+.
T Consensus        22 G~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~   53 (323)
T 3f8d_A           22 GLGPAAYGAALYSARYMLKTLVIGET--PGGQLT   53 (323)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGG
T ss_pred             CccHHHHHHHHHHHHCCCcEEEEecc--CCCeec
Confidence            89999999999999999999999998  888765

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.96  E-value=0.0023  Score=66.17  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             HCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhC
Q psy893          242 ASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ..+.+|++++.|.+|..++ +++++|.  .++.  ++.|+.||+++++..+- +||
T Consensus       223 r~nl~v~~~~~v~~i~~~~-~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP-~LL  276 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEG-NQVRSLEVVGRQGSAEVFADQIVLCAGALESP-ALL  276 (526)
T ss_dssp             CTTEEEECSCEEEEEEEET-TEEEEEEEEETTEEEEEEEEEEEECSHHHHHH-HHH
T ss_pred             CCCeEEEeCCEEEEEEecC-CeEEEEEEEecCceEEEeecceEEcccccCCc-chh
Confidence            3468999999999999998 8999988  3443  56789999999988764 443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.00037  Score=70.93  Aligned_cols=57  Identities=12%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++..|+  .+|+ +.+|.||++++...
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADA-DGRRVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSCEEEEESSSCE-EEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CCEEEEEEcCCCe-EEeCEEEEeeCccc
Confidence            45778899999999999999999999999876 4433454  4676 99999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.92  E-value=0.00055  Score=67.15  Aligned_cols=50  Identities=26%  Similarity=0.207  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...+...|.+.++++|++|+. ++|++|..+     .       + +||.||+|++++.  ..|++
T Consensus       141 p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~-----~-------~-~a~~VV~A~G~~s--~~l~~  190 (363)
T 1c0p_A          141 APKYCQYLARELQKLGATFER-RTVTSLEQA-----F-------D-GADLVVNATGLGA--KSIAG  190 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT-----C-------S-SCSEEEECCGGGG--GTSBT
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-EEcccHhhc-----C-------c-CCCEEEECCCcch--hhccC
Confidence            468999999999999999998 999887532     0       2 7999999999997  45554

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.92  E-value=0.00045  Score=66.79  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC----CCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR----HVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~----~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|++    ..+||....
T Consensus        29 G~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           29 GSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            89999999999999999999999994    478887653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00061  Score=65.64  Aligned_cols=33  Identities=39%  Similarity=0.610  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|++ .+||.+.
T Consensus        15 G~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   47 (325)
T 2q7v_A           15 GGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA   47 (325)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence            89999999999999999999999998 6888765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.88  E-value=0.00048  Score=70.18  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHH-HHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSA-QASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~-~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+ ++.|++|+++++|++|..++ +++ .|+ .  +|  +++.+|.||++++...
T Consensus       215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNG-DSV-SLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECSCEEEEEEECS-SSE-EEEEECC---EEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC-CeE-EEEEEcCCCceEEEECCEEEECCCccc
Confidence            46778888999 89999999999999999876 443 355 4  67  6799999999988653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.85  E-value=0.00066  Score=65.16  Aligned_cols=33  Identities=45%  Similarity=0.771  Sum_probs=30.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+ ..+||.+.
T Consensus        23 G~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           23 GAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            8999999999999999999999999 46788764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.84  E-value=0.00063  Score=70.65  Aligned_cols=34  Identities=35%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus        23 GaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           23 GAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            8999999999999999999999999999998764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.82  E-value=0.00039  Score=67.85  Aligned_cols=51  Identities=16%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...+..+|.+.++++|++|+. ++|++|...+            .++||.||+|++++.  ..|++
T Consensus       141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~------------~~~a~~VV~A~G~~s--~~l~~  191 (351)
T 3g3e_A          141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEVA------------REGADVIVNCTGVWA--GALQR  191 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH------------HTTCSEEEECCGGGG--GGTSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh------------cCCCCEEEECCCcCh--HhhcC
Confidence            458899999999999999988 8888775432            156999999999987  46654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.81  E-value=0.00056  Score=65.34  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEE-EccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAV-LERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~v-lE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+| +|| +.+||.+.
T Consensus        11 G~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~   44 (315)
T 3r9u_A           11 GGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQIT   44 (315)
T ss_dssp             CCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred             CCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence            8999999999999999999999 999 67898764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.79  E-value=0.00068  Score=70.07  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe--EEEE-eCCe-EEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA--SGVV-TNGL-EIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~--~~v~-~~g~-~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++++++  +.|+ .+|+ ++.||.||++++..
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            46788899999999999999999999998652443  3455 6777 89999999999854

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.77  E-value=0.00065  Score=69.38  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC-CCCCeEEEE-e-----CCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD-SDKRASGVV-T-----NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~~~~~v~-~-----~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..+ + ++.+.|+ .     +++++.+|.||++++...
T Consensus       224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  287 (478)
T 1v59_A          224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDD-KNVVEIVVEDTKTNKQENLEAEVLLVAVGRRP  287 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecC-CCeEEEEEEEcCCCCceEEECCEEEECCCCCc
Confidence            467888899999999999999999999872 2 3344555 4     356799999999998654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.76  E-value=0.00074  Score=68.31  Aligned_cols=34  Identities=38%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|.  +|+|+|+++.+||...
T Consensus        13 GaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~   48 (447)
T 2gv8_A           13 GAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN   48 (447)
T ss_dssp             CCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             CccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence            899999999999999999  9999999999998654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.76  E-value=0.00068  Score=68.78  Aligned_cols=57  Identities=25%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ ++ +.++ .+|+++.+|.||++++...
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCc
Confidence            45788889999999999999999999999865 43 3455 5788899999999998764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.75  E-value=0.00069  Score=69.13  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE------eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV------TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~------~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ ++.+.|+      .+++++.+|.||++++..
T Consensus       220 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          220 MEISKNFQRILQKQGFKFKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence            4678888999999999999999999999876 4422343      245689999999999865

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.75  E-value=0.00065  Score=72.72  Aligned_cols=35  Identities=34%  Similarity=0.448  Sum_probs=33.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus       398 GgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          398 GAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            89999999999999999999999999999998754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.73  E-value=0.00079  Score=68.73  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++++++++|++|..++ +++. |+ .++   +++.+|.||++++...
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~-~~~~-v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN-KQVT-VKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS-SCEE-EEEESSSEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CEEE-EEEEeCCCcEEEECCEEEEeeCCcc
Confidence            35688889999999999999999999999876 5543 55 543   5789999999998654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.72  E-value=0.00078  Score=68.62  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|.+|..++ +++ .|+ .   +|  +++.+|.||++++...
T Consensus       218 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          218 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG-DGV-KLTVEPSAGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSS-SSE-EEEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CeE-EEEEEecCCCcceEEECCEEEECCCCCc
Confidence            4677888999999999999999999998765 443 344 3   55  6899999999998664

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=96.72  E-value=0.00087  Score=66.83  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceee---------EEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVT---------EITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~---------~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.|.+.+++.|++|+++++|+         +|..++ +++ +|+ .+| +++||.||+|++++.
T Consensus       171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~-~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN-THQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC-CeE-EEEECCc-EEECCEEEECCCccH
Confidence            35789999999999999999999999         888776 665 566 444 899999999999885

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.72  E-value=0.00086  Score=66.69  Aligned_cols=59  Identities=10%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      .|.+.|.+.++  +++|+++++|++|..++ +++ .|+ .+|++++||.||.|.+.+...++.+
T Consensus       129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~AdG~~S~vR~~l  188 (398)
T 2xdo_A          129 DLRAILLNSLE--NDTVIWDRKLVMLEPGK-KKW-TLTFENKPSETADLVILANGGMSKVRKFV  188 (398)
T ss_dssp             HHHHHHHHTSC--TTSEEESCCEEEEEECS-SSE-EEEETTSCCEEESEEEECSCTTCSCCTTT
T ss_pred             HHHHHHHhhcC--CCEEEECCEEEEEEECC-CEE-EEEECCCcEEecCEEEECCCcchhHHhhc
Confidence            55556666553  36899999999999887 655 466 7888899999999999876444444

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.67  E-value=0.00083  Score=68.84  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++. ++|+++++|++|..++ +++. |+ .  +|  +++.+|.||++++...
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKE-DAVE-VIYFDKSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEECS-SSEE-EEEECTTCCEEEEEESEEEECSCCEE
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEEcC-CEEE-EEEEeCCCceEEEECCEEEEeeCCcc
Confidence            56788888888887 9999999999999876 6554 55 4  67  6899999999998653

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.67  E-value=0.0011  Score=65.47  Aligned_cols=51  Identities=10%  Similarity=0.021  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ..+.+.|.+.+++.|++|+++++|++|....            +++||.||.|.+.+.. ++.+
T Consensus        98 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~------------~~~ad~vV~AdG~~S~-R~~l  148 (381)
T 3c4a_A           98 RGLVHALRDKCRSQGIAIRFESPLLEHGELP------------LADYDLVVLANGVNHK-TAHF  148 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCSGGGCC------------GGGCSEEEECCGGGGG-TCCS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEeccchhcc------------cccCCEEEECCCCCch-HHhh
Confidence            4778889999988999999999998875311            2479999999998875 5544

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.67  E-value=0.00086  Score=68.54  Aligned_cols=56  Identities=5%  Similarity=-0.019  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC----CeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN----GLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~----g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|.+|..++ +. ..|+ .+    |+++.+|.||++++...
T Consensus       226 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p  286 (482)
T 1ojt_A          226 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DG-VYVTFEGANAPKEPQRYDAVLVAAGRAP  286 (482)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEET-TE-EEEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEECCEEEEEEEcC-Ce-EEEEEeccCCCceEEEcCEEEECcCCCc
Confidence            4677888899999999999999999998765 43 3466 66    67789999999998654

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.67  E-value=0.00011  Score=64.21  Aligned_cols=93  Identities=11%  Similarity=-0.023  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHhC-CCCCCCeEEe-EecChhhHHHhcCCCCCccccCcccccccccCCCCCCCCCCCCCCCCCCeEe
Q psy893          417 KANYATNVFSSIEQYC-PGFTQDIVGY-EILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLL  494 (523)
Q Consensus       417 k~~~~~~~~~~l~~~~-P~~~~~i~~~-~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~rp~~~~~~~~~~t~i~~Lyl  494 (523)
                      .+++.+.+++.|.+++ |+. +.++.. .+.  .+|.+. ....|+. .. ..+.+....++       ..+.|..+|||
T Consensus        56 ~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~--~~W~~d-p~~~Ga~-s~-~~pg~~~~~~~-------~l~~p~grl~F  122 (181)
T 2e1m_C           56 DAERYGYALENLQSVHGRRI-EVFYTGAGQT--QSWLRD-PYACGEA-AV-YTPHQMTAFHL-------DVVRPEGPVYF  122 (181)
T ss_dssp             TTTTHHHHHHHHHHHHCGGG-GGTEEEEEEE--EESSSC-TTTSSSE-EC-CCTTHHHHHHH-------HHHSCBTTEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCc-HhhccCccee--cccCCC-CCCCCcc-cC-cCCCchHHHHH-------HHhCCCCcEEE
Confidence            3667788999999988 665 333211 011  134332 1223442 11 11222111112       23456789999


Q ss_pred             cCCCCCCCC-CCCCc--cHHHHHHHHHHHhc
Q psy893          495 CGSGAHPGG-GVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       495 aG~~~~pg~-g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ||+.+.... .+.||  ||.+||++|++.++
T Consensus       123 AGe~ts~~~g~~eGAl~SG~raA~~i~~~l~  153 (181)
T 2e1m_C          123 AGEHVSLKHAWIEGAVETAVRAAIAVNEAPV  153 (181)
T ss_dssp             CSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC
T ss_pred             EEHHHcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            999986333 34577  99999999998764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.64  E-value=0.0011  Score=67.86  Aligned_cols=58  Identities=10%  Similarity=0.047  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++|+++++|++|..++ ++..+.|+ .   +|  ++++||.||.|++...
T Consensus       166 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          166 RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            4677788888888999999999999998742 13334555 2   55  4789999999999775

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.63  E-value=0.0013  Score=65.60  Aligned_cols=62  Identities=13%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHH-CC-cEEEeCceeeEEEECCCCCeEEEE-eC---C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQA-SG-AQLFTSQTVTEITLDSDKRASGVV-TN---G--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~~~~~~v~-~~---g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..|.+.|.+.+++ .| ++|+++++|++|.. + ++++ |+ .+   |  .+++||.||.|.+.+...++.+.
T Consensus       107 ~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~-~~v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~  176 (410)
T 3c96_A          107 GELQMILLAAVRERLGQQAVRTGLGVERIEE-R-DGRV-LIGARDGHGKPQALGADVLVGADGIHSAVRAHLH  176 (410)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E-TTEE-EEEEEETTSCEEEEEESEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C-CccE-EEEecCCCCCceEEecCEEEECCCccchhHHHhc
Confidence            3677778888776 36 58999999999988 5 5554 54 43   7  57899999999998876666553

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.61  E-value=0.0012  Score=67.69  Aligned_cols=57  Identities=14%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|...+++.+ .|+ .+   |+  ++.+|.||++++...
T Consensus       225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence            56788899999999999999999999988542433 354 33   55  478999999988643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.60  E-value=0.0012  Score=64.77  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|++++++++|++|..++ +.+ .|. .+| ++.+|+||+|++...
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADD-AYY-TIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS-SSE-EEEESSC-CEEEEEEEECCCSTT
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECC-CeE-EEEeCCC-EEEeCEEEECCCCCC
Confidence            445556666778899999999999999876 443 466 555 689999999999764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.59  E-value=0.0014  Score=62.60  Aligned_cols=33  Identities=27%  Similarity=0.580  Sum_probs=29.7

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|+ +|+|+|++ .+||.+.
T Consensus         8 G~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A            8 GGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             CCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             CccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            899999999999999999 99999995 5777653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.58  E-value=0.0011  Score=67.76  Aligned_cols=58  Identities=10%  Similarity=0.062  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---C----eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---G----LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g----~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|++++.|++|..++++....|+ .+   |    +++.+|.||++++...
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence            567888899999999999999999999987523123455 43   2    6789999999988643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.56  E-value=0.0013  Score=67.85  Aligned_cols=58  Identities=12%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC--CeEEEE---eCC-e--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDK--RASGVV---TNG-L--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~--~~~~v~---~~g-~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|++++.|++|...+++  ....|+   .+| +  ++.+|.||++++...
T Consensus       250 ~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          250 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence            567888889999999999999998888753311  222232   355 2  568999999998653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.55  E-value=0.0012  Score=70.94  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=33.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus       396 GgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          396 GAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            89999999999999999999999999999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.55  E-value=0.0015  Score=66.39  Aligned_cols=58  Identities=12%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHCCcE--EEeCceeeEEEECCCCCeEEEE-eC---C--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQ--LFTSQTVTEITLDSDKRASGVV-TN---G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~~~~~v~-~~---g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++  |+++++|++|..++++..+.|+ .+   |  .++.+|.||+|++...
T Consensus       101 ~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A          101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCC
Confidence            35566677777777887  9999999999886522234455 33   4  5789999999999643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.54  E-value=0.0013  Score=63.58  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEcc----CCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLER----RHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~----~~~~GG~~   33 (523)
                      |||++||++|..|+++|++|+|+|+    ...+||.+
T Consensus        15 G~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~   51 (333)
T 1vdc_A           15 GSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQL   51 (333)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCcee
Confidence            8999999999999999999999998    45556553

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.50  E-value=0.0014  Score=61.83  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=26.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||++||+||..|+++|++|+|+|++..
T Consensus         9 G~G~aGl~aA~~l~~~g~~v~lie~~~~   36 (297)
T 3fbs_A            9 GGSYAGLSAALQLGRARKNILLVDAGER   36 (297)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            8999999999999999999999999764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0013  Score=67.18  Aligned_cols=58  Identities=3%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++++++..|+ .+| +++.+|.||++++...
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS  285 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence            467788889999999999999999999876524345577 788 7899999999998643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.49  E-value=0.0013  Score=67.01  Aligned_cols=56  Identities=16%  Similarity=0.185  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ + ...|+.++.++.+|.||++++...
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~-~~~v~~~~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMD-G-EFVLTTTHGELRADKLLVATGRTP  271 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEET-T-EEEEEETTEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-EEEEEECCcEEEcCEEEECCCCCc
Confidence            4688899999999999999999999998764 4 344554566899999999998764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.47  E-value=0.0014  Score=66.60  Aligned_cols=56  Identities=25%  Similarity=0.323  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +++ .+. . +|  +++.+|.||++++...
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p  271 (464)
T 2a8x_A          212 ADVSKEIEKQFKKLGVTILTATKVESIADGG-SQV-TVTVTKDGVAQELKAEKVLQAIGFAP  271 (464)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCEEEEEEECS-SCE-EEEEESSSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcC-CeE-EEEEEcCCceEEEEcCEEEECCCCCc
Confidence            4677888899999999999999999998765 544 355 4 66  6789999999988653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.45  E-value=0.0013  Score=66.53  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ ++...|+ .+|+++.+|.||++++...
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELEDGRSETVDCLIWAIGREP  265 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CcEEEEEECCCcEEEcCEEEECCCCCc
Confidence            4678888999999999999999999999865 4334566 7888899999999987543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.44  E-value=0.0013  Score=66.09  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++||++|+.|+++|++|+|+||+.
T Consensus        29 GaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           29 GAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            899999999999999999999999976

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.44  E-value=0.0015  Score=62.68  Aligned_cols=57  Identities=16%  Similarity=0.161  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC----C--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN----G--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~----g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +++.+|+ .+    |  +++.+|.||++++...
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            4567778888888999999999999998876 6776677 44    4  4789999999988553

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.43  E-value=0.0015  Score=66.32  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ ++ ..|+ .+|+ ++.+|.||++++...
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~G~~~i~~D~vv~a~G~~p  264 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDA-QG-TTLVAQDGTRLEGFDSVIWAVGRAP  264 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEET-TE-EEEEETTCCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-Ce-EEEEEeCCcEEEEcCEEEECCCCCc
Confidence            4677888899999999999999999998765 43 4566 7888 899999999988643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.42  E-value=0.0014  Score=66.47  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|.. + +  +.++ .+|  +++.+|.||++++...
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~-~--v~v~~~~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          212 SELTAPVAESLKKLGIALHLGHSVEGYEN-G-C--LLANDGKGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEET-T-E--EEEECSSSCCCEECCSCEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEe-C-C--EEEEECCCceEEEECCEEEECcCCCc
Confidence            46778888999999999999999999986 4 4  3344 456  5899999999998654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.39  E-value=0.0017  Score=65.89  Aligned_cols=56  Identities=14%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +++ .++ .   +++++.+|.||++++...
T Consensus       211 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          211 KQMAAIIKKRLKKKGVEVVTNALAKGAEERE-DGV-TVTYEANGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEE-EEEEEETTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CeE-EEEEEeCCceeEEEcCEEEECcCCCc
Confidence            4677888899999999999999999998765 443 344 3   456799999999998664

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.39  E-value=0.0012  Score=67.79  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ +++ .|+ .+|+++.+|.||++++...
T Consensus       223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          223 ADAALVLEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCc
Confidence            3678889999999999999999999999876 554 466 6788899999999998764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.38  E-value=0.0022  Score=66.66  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---C--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---G--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      .+-+.|.+.+++.   |+++++|++|..++ ++++ |+ .+   |  .+++||.||.|.+.+...++.+.
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~-~~v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  203 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRD-DHVR-ATITDLRTGATRAVHARYLVACDGASSPTRKALG  203 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECS-SCEE-EEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeC-CEEE-EEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcC
Confidence            5666777777765   99999999999887 6654 44 33   6  47899999999998876666653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.36  E-value=0.0017  Score=66.42  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ ++...|+ .+|+++.+|.||++++...
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEECCCcEEEcCEEEEccCCCc
Confidence            4678889999999999999999999999875 4434567 7888899999999998654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.31  E-value=0.0022  Score=65.46  Aligned_cols=56  Identities=18%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCe-----EEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGL-----EIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~-----~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++|++++.|.+|..++++.+ .|+ .+++     ++.+|.||++++..
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccc
Confidence            46788889999999999999999999998652443 455 4432     78999999998864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.30  E-value=0.0018  Score=62.64  Aligned_cols=33  Identities=39%  Similarity=0.570  Sum_probs=29.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+. .+||.+.
T Consensus        21 G~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           21 GSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            89999999999999999999999976 6777653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.30  E-value=0.002  Score=65.42  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e-C--Ce--EEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T-N--GL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~-~--g~--~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +++ .|+ . +  |+  ++.+|.||++++..
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcc
Confidence            4677888899999999999999999998765 443 355 4 6  76  89999999998754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.27  E-value=0.0026  Score=66.95  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             CCcEEEeCceeeEEEECCC-CCeEEEE-e---CCe--EEEcCEEEEcCChHHHH
Q psy893          243 SGAQLFTSQTVTEITLDSD-KRASGVV-T---NGL--EIKAKYVLSNTTAKCTL  289 (523)
Q Consensus       243 ~G~~i~~~~~V~~I~~~~~-~~~~~v~-~---~g~--~~~ad~vI~a~~~~~~~  289 (523)
                      .|++|++++.|++|..+++ +++++|+ .   +|+  ++.||.||++++.....
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~  326 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT  326 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHH
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCH
Confidence            4799999999999998752 3788888 4   354  67899999999987653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.25  E-value=0.0023  Score=58.27  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.|.+.+++. |++++ +++|++|..++ +++++|+ .+|++++||.||.|++.+.
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEG-NRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            4556677778786 89998 67999999877 7777777 7787899999999998743

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.22  E-value=0.0023  Score=65.73  Aligned_cols=57  Identities=16%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeE-EEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLE-IKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~-~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ ++...|+ .+|++ +.+|.||++++...
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~~~D~vi~a~G~~p  275 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKNLSIHLSDGRIYEHFDHVIYCVGRSP  275 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-CceEEEEECCCcEEEECCEEEECCCCCc
Confidence            4678889999999999999999999998765 3334566 77877 99999999998654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.20  E-value=0.002  Score=65.98  Aligned_cols=57  Identities=12%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..++ ++...|+ .+|+++.+|.||++++...
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p  292 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNT-DGSKHVTFESGKTLDVDVVMMAIGRIP  292 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CceEEEEECCCcEEEcCEEEECCCCcc
Confidence            4678888999999999999999999999875 4444577 7888899999999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.20  E-value=0.0028  Score=70.88  Aligned_cols=34  Identities=29%  Similarity=0.643  Sum_probs=32.0

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|+ +|+|+|+.+.+||...
T Consensus       194 GgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~  228 (1025)
T 1gte_A          194 GAGPASISCASFLARLGYSDITIFEKQEYVGGLST  228 (1025)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence            899999999999999999 7999999999999763

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.17  E-value=0.0036  Score=60.79  Aligned_cols=34  Identities=32%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|+.||+.|+++|++|+|+|++...+.-.+
T Consensus         8 GgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h   41 (443)
T 3g5s_A            8 GAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH   41 (443)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred             CchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence            8999999999999999999999999987665544

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.14  E-value=0.0031  Score=69.99  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=32.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus       135 GaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          135 GAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            8999999999999999999999999999999886

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.10  E-value=0.003  Score=67.31  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|+++.+||...
T Consensus       380 GgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          380 GAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            8999999999999999999999999999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.01  E-value=0.003  Score=64.61  Aligned_cols=47  Identities=13%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      +.++++|++|++++.|++|..+  +++..|+ .+|+++.+|.||++++..
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~Vv~a~G~~  312 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDALIFADGRR  312 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEEEECCCEE
T ss_pred             HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEEEECCCcC
Confidence            6677889999999999999865  4456677 778899999999999865

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.00  E-value=0.0046  Score=53.63  Aligned_cols=53  Identities=21%  Similarity=0.113  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+.+.+.+++.|++++++ +|++|..++ +. +.|+ .+| ++.+|.||+|++...
T Consensus        57 ~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~-~~-~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           57 ELLRRLEAHARRYGAEVRPG-VVKGVRDMG-GV-FEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CCCEEEECS-SS-EEEECSSC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHcCCEEEeC-EEEEEEEcC-CE-EEEEECCC-EEEECEEEECCCCCC
Confidence            34455666677889999999 999999876 54 3566 677 899999999998764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=95.98  E-value=0.0043  Score=64.31  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++++.+ +|++|..++++.++.|+ .+|++++||.||.|.+.+.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            578888999999999999999 89999986535566777 7787899999999999875

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.91  E-value=0.0045  Score=58.88  Aligned_cols=31  Identities=29%  Similarity=0.562  Sum_probs=27.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||..|+++|++|+|+|+  .+||.+
T Consensus         8 G~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~   38 (310)
T 1fl2_A            8 GSGPAGAAAAIYSARKGIRTGLMGE--RFGGQI   38 (310)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEECS--STTGGG
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEeC--CCCcee
Confidence            8999999999999999999999986  467764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.89  E-value=0.0044  Score=62.67  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++ .|+ .+| ++.+|.||++++...
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v-~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETA-NGI-VLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECS-SCE-EEEESSC-EEEESEEEECSCCBC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC-CeE-EEEECCC-EEEeCEEEECcCCCC
Confidence            35778889999999999999999999999766 666 566 555 899999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.74  E-value=0.0046  Score=62.71  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             CCChhHHHHHHHHHHcC-----CcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAG-----LSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-----~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.|     .+|+|+|+++.+|
T Consensus        37 GaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           37 GFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             CCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            89999999999999999     9999999999887

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=95.73  E-value=0.0049  Score=65.27  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHCCc--EEEeCceeeEEEECCC--CCeEEEE-e------CC--eEEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGA--QLFTSQTVTEITLDSD--KRASGVV-T------NG--LEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~--~~~~~v~-~------~g--~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.|+  +|+++++|++|..+++  +..+.|+ .      +|  ++++||.||.|.+.+...++++.
T Consensus       141 ~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  218 (639)
T 2dkh_A          141 ARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG  218 (639)
T ss_dssp             HHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence            4677888999999987  9999999999998752  1223455 3      46  57899999999999877777775

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.71  E-value=0.0038  Score=64.24  Aligned_cols=57  Identities=23%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++++.+ +|++|..++++.+++|+ .+|++++||.||.|.+.+.
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            478888999999999999999 99999986536667787 7787899999999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.68  E-value=0.0049  Score=62.70  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++. |+ .+|+++.+|.||++++..
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~-v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN-GKVA-RVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEE-EEEESSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC-CeEE-EEEeCCCEEEcCEEEECCCCC
Confidence            45788899999999999999999999999866 6654 66 888899999999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.68  E-value=0.0047  Score=62.44  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=31.8

Q ss_pred             CCChhHHHHHHHHHH-c------CCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR-A------GLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~-~------G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++ .      |++|+|+|+.+.+||.+.
T Consensus        10 G~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A           10 GSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            899999999999999 7      999999999999998764

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.63  E-value=0.014  Score=47.35  Aligned_cols=52  Identities=10%  Similarity=0.049  Sum_probs=43.4

Q ss_pred             eEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhcCCCCCCeEEEEEecCCC
Q psy893          272 LEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQSIDYASPVTKINVALKSI  325 (523)
Q Consensus       272 ~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  325 (523)
                      ++++||+||+|+|+..+ ..+...+.+|+...+.++++.+. +..++++.++++
T Consensus         4 ~~~~Ad~VIvTvP~~vL-~~I~F~P~LP~~k~~Ai~~l~~g-~~~Kv~l~f~~~   55 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSL-RFVKVTPPFSYKKRRAVIETHYD-QATKVLLEFSRR   55 (130)
T ss_dssp             EEEEESEEEECSCHHHH-TTSEEESCCCHHHHHHHHHCCEE-CEEEEEEEESSC
T ss_pred             eEEEcCEEEEcCCHHHH-hcCcCCCCCCHHHHHHHHhCCCc-ceeEEEEEECCC
Confidence            47899999999999985 56654556999999999999876 789999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.62  E-value=0.0066  Score=61.45  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|  ++|+|+|+.+.+||+.+
T Consensus        13 G~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A           13 GSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             CCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            89999999999999998  99999999999998763

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=95.61  E-value=0.0061  Score=62.95  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHH
Q psy893          230 GAVSQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       230 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~  288 (523)
                      ..+.+.|.+.+++ .|++++.+ .|++|..++++.++.|+ .+|++++||.||.|.+.+..
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            4678889999988 89999999 59999887535556677 67778999999999998753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.60  E-value=0.007  Score=62.83  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++. |++++++ +|++|..++++.+++|+ .+|+++.||.||.|.+.+.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            46888999999998 9999999 99999986536666777 7788899999999999875

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.58  E-value=0.0071  Score=63.95  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHC--CcEEEeCceeeEEEECCCC---CeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQAS--GAQLFTSQTVTEITLDSDK---RASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~--G~~i~~~~~V~~I~~~~~~---~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+...|.+.+++.  |++|+.++.|.+|..++ +   ++++|. .   +|+  .+.|+.||+|++-..
T Consensus       167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~-~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g  233 (662)
T 3gyx_A          167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDK-NTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV  233 (662)
T ss_dssp             SHHHHHHHHHHHHHCTTTEECSEEECCCEECS-SSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeC-CccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence            5677888888887  99999999999999987 5   888886 2   453  589999999998654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=95.56  E-value=0.007  Score=63.14  Aligned_cols=56  Identities=21%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+...|.+.+++. |++|+ +..|+.|..++ +++.+|. .+|+++.||.||+|++.+.
T Consensus       117 ~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~-g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          117 TQYSLYMRRIVEHEPNIDLL-QDTVIGVSANS-GKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHHHhCCCCEEE-eeEEEEEEecC-CEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            35677888888874 89985 56999998887 7888888 7888999999999999763

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.49  E-value=0.0074  Score=63.39  Aligned_cols=58  Identities=10%  Similarity=0.035  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC-----CC---CCeE-EEE-eCCeEEE--cCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD-----SD---KRAS-GVV-TNGLEIK--AKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-----~~---~~~~-~v~-~~g~~~~--ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|...     .+   +++. .+. .+|+++.  +|.||++++...
T Consensus       326 ~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p  395 (598)
T 2x8g_A          326 QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREP  395 (598)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcc
Confidence            467788888899999999999988888642     11   2221 222 4676555  999999998653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.49  E-value=0.0068  Score=62.48  Aligned_cols=60  Identities=12%  Similarity=-0.029  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          226 EGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       226 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+--..+++.+.+.+++.|+++++++.|.++...+ +++ .|. .+++++.+|.|++|++-..
T Consensus       259 ~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~-~~~-~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          259 RGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD-DKI-LVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET-TEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             cccchhHHHHHHHHHHhhcceeecceEEEEEEecC-CeE-EEEEcCCCeEEEEEEEEcccccC
Confidence            33345788999999999999999999999999876 554 355 6777889999999998653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.47  E-value=0.0087  Score=61.66  Aligned_cols=49  Identities=16%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             HHHHHCCcEEEeCceeeEEEECCC-CCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSD-KRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      +.+++.|++++.+++|+.|..+.+ +..+.|. .+|+++.+|+||+|++..
T Consensus       275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            334456788999999999975421 2234566 677788999999998865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.42  E-value=0.0087  Score=60.42  Aligned_cols=54  Identities=26%  Similarity=0.258  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++. +++++++.|.+|..++  ++..+..+|+++.+|.||++++..
T Consensus       190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             HHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEEEETTEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEEEeCCCEEECCEEEEeeCCc
Confidence            46778888888888 9999999999998653  444455778899999999998854

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.40  E-value=0.0054  Score=61.10  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++++++++|++|..+      +|+ .+|+++.+|.||++++..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCC
Confidence            578888999999999999999999999632      256 788899999999998753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.39  E-value=0.01  Score=61.74  Aligned_cols=46  Identities=13%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             HCCcEEEeCceeeEEEEC--CCCCeEEEE-e--CCe--EEEcC-EEEEcCChHHH
Q psy893          242 ASGAQLFTSQTVTEITLD--SDKRASGVV-T--NGL--EIKAK-YVLSNTTAKCT  288 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~--~~~~~~~v~-~--~g~--~~~ad-~vI~a~~~~~~  288 (523)
                      +.+.+|++++.|++|..+  + +++++|+ .  +|+  ++.|+ .||++++...+
T Consensus       218 r~Nl~v~~~a~v~ri~~~~~~-~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~s  271 (577)
T 3q9t_A          218 KPNITIVPEVHSKRLIINEAD-RTCKGVTVVTAAGNELNFFADREVILSQGVFET  271 (577)
T ss_dssp             CTTEEEECSEEEEEEEEETTT-TEEEEEEEEETTSCEEEEEEEEEEEECSHHHHH
T ss_pred             CCCeEEEcCcEEEEEEEeCCC-CEEEEEEEEeCCCcEEEEEeeeEEEEcccccCC
Confidence            458999999999999998  6 8899998 3  364  46774 59999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.33  E-value=0.0089  Score=62.64  Aligned_cols=54  Identities=9%  Similarity=0.091  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +   +|+ .+|+++.+|.||++++..
T Consensus       227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENG-A---VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG-T---EEEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCeEEEEecCC-C---EEEECCCCEEEcCEEEEccCCC
Confidence            35678889999999999999999999998754 3   366 788899999999999854

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=95.26  E-value=0.012  Score=62.59  Aligned_cols=29  Identities=31%  Similarity=0.544  Sum_probs=27.1

Q ss_pred             CCChhHHHHHHHHHH-----cCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLAR-----AGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~-----~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|++     .|.+|+|+||++.+
T Consensus        15 GaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A           15 GAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            899999999999999     99999999998654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.21  E-value=0.011  Score=59.69  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...+.+.+.+.+++.|++|+++++|++|..++ +++..|..+|+++.+|.||++++...
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~~v~~~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD-DEIITKTLDGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEET-TEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC-CeEEEEEeCCCEEECCEEEECcCCCC
Confidence            35678889999999999999999999998755 66655556677899999999998654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.07  E-value=0.032  Score=50.54  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=25.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++||+||..|++.|.+|+|+|++.
T Consensus        10 GgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A           10 GAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899999999999999999999999973

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.04  E-value=0.012  Score=59.19  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..+  +++..|..+|+++.+|.||++++...
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEECCCEEECCEEEECcCCCC
Confidence            467788899999999999999999999865  44444555667899999999998654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.96  E-value=0.013  Score=60.91  Aligned_cols=56  Identities=9%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC------------------CCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD------------------SDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~------------------~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|+++++++.|++|..+                  .++++ .++ .+|+++.+|.||++++..
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~  266 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVR  266 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCc
Confidence            467788889999999999999999999873                  21444 355 778899999999998854

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.93  E-value=0.017  Score=57.51  Aligned_cols=55  Identities=16%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++|++++.|++|..+  +++.+|+ .+|+++.||.||++++..
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECCCCEEEcCEEEEeeCCe
Confidence            467788889999999999999999999875  4556788 789999999999999865

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=94.89  E-value=0.017  Score=59.83  Aligned_cols=55  Identities=20%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             HHHHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EE---EcCEEEEcCChHHH
Q psy893          233 SQALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EI---KAKYVLSNTTAKCT  288 (523)
Q Consensus       233 ~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~---~ad~vI~a~~~~~~  288 (523)
                      ..++.+.+.+ .|++|++++.|++|..++ +++++|+ .+   |+  ++   .++.||+|++...+
T Consensus       198 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~-~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~s  262 (546)
T 1kdg_A          198 VATYLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT  262 (546)
T ss_dssp             HHTHHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcC
Confidence            3445555555 489999999999999987 8899998 43   64  33   78899999999765

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.87  E-value=0.016  Score=58.99  Aligned_cols=56  Identities=21%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|..+  +++..|..++.++.+|.||++++...
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETDKGTYKADLVLVSVGVKP  282 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETTEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECCCEEEcCEEEECcCCCc
Confidence            467788899999999999999999999864  44555665566899999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=94.86  E-value=0.058  Score=53.96  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEE--CCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITL--DSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~--~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++++++++|++|..  ++ +++..|+ .+|+++.+|.||++++..
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ-QKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT-CCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC-CcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            46778888999999999999999999997  55 6776787 788899999999998854

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=94.83  E-value=0.069  Score=54.13  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=25.4

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|+++  |++|+|+|+++.++
T Consensus        10 GaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A           10 GAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             CCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            8999999999999998  99999999998865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.78  E-value=0.014  Score=57.03  Aligned_cols=50  Identities=18%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++++++++|++|.  . .   +|+ .+|+ +.+|.||++++..
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~-~---~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN--E-E---GVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC--S-S---EEEETTEE-EECSCEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE--e-e---EEEECCCE-EEcCEEEECcCCC
Confidence            4677888899999999999999999997  2 2   356 6777 9999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.75  E-value=0.018  Score=59.74  Aligned_cols=48  Identities=31%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             HHHCCcEEEeCceeeEEEEC----CCCCeEEEE-e--CCe--EEEcC-EEEEcCChHHH
Q psy893          240 AQASGAQLFTSQTVTEITLD----SDKRASGVV-T--NGL--EIKAK-YVLSNTTAKCT  288 (523)
Q Consensus       240 ~~~~G~~i~~~~~V~~I~~~----~~~~~~~v~-~--~g~--~~~ad-~vI~a~~~~~~  288 (523)
                      +.+.+.+|++++.|++|..+    + ++++||+ .  +|+  ++.|+ .||++++...+
T Consensus       237 ~~r~NL~V~t~a~V~rIl~d~~~~~-~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~S  294 (583)
T 3qvp_A          237 YQRPNLQVLTGQYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVS  294 (583)
T ss_dssp             TTCTTEEEECSCEEEEEEEECSSSS-CEEEEEEEESSTTCEEEEEEEEEEEECSCTTTH
T ss_pred             hcCCCcEEEcCCEEEEEEeccCCCC-CEEEEEEEEecCCcEEEEEECCEEEEeCCccCC
Confidence            34568999999999999997    5 8899998 4  464  56786 59999998765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=94.65  E-value=0.063  Score=54.05  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=28.5

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG   31 (523)
                      |||++|++||..|++.  |++|+|+|+++.++.
T Consensus         7 GgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            7 GCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            8999999999999998  999999999987653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.59  E-value=0.081  Score=45.54  Aligned_cols=27  Identities=48%  Similarity=0.719  Sum_probs=26.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||++|+.+|..|++.|.+|+|+|+.+
T Consensus         8 GgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            8 GGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            899999999999999999999999976

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=94.58  E-value=0.083  Score=54.11  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=24.7

Q ss_pred             CCChhHHHHHHHHHH---cCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLAR---AGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~V~vlE~~~~   28 (523)
                      |||++|+++|+.|++   +|++|+|+|+.+.
T Consensus         9 GgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            9 GGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             CCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            899999999999999   9999999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.56  E-value=0.07  Score=55.23  Aligned_cols=28  Identities=21%  Similarity=0.533  Sum_probs=26.3

Q ss_pred             CCChhHHHHHHHHHH---cCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLAR---AGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~V~vlE~~~~   28 (523)
                      |||++|++||+.|++   .|.+|+|+|+.+.
T Consensus        32 GgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           32 GGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            899999999999999   9999999999653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.52  E-value=0.081  Score=53.96  Aligned_cols=34  Identities=38%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             CCChhHHHHHHHHHH-cCCcEEEEc--------cCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR-AGLSVAVLE--------RRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~   34 (523)
                      |||++|++||..|++ .|++|+|+|        +.+.+||.|.
T Consensus        14 GgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A           14 GAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             CCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             CCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            899999999999999 999999999        3566788664

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.52  E-value=0.059  Score=53.51  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             CCChhHHHHHHHHHHcCCc--EEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLS--VAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~--V~vlE~~~~~GG   31 (523)
                      |||++||+||..|+++|++  |+|+|+.+.++.
T Consensus         9 GaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y   41 (410)
T 3ef6_A            9 GNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY   41 (410)
T ss_dssp             CCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB
T ss_pred             cccHHHHHHHHHHHccCcCCeEEEEECCCCCCc
Confidence            8999999999999999988  999999987653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.47  E-value=0.079  Score=53.99  Aligned_cols=34  Identities=35%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             CCChhHHHHHHHHHH-cCCcEEEEc--------cCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR-AGLSVAVLE--------RRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~   34 (523)
                      |||++|++||++|++ .|++|+|+|        +...+||.|.
T Consensus        10 GgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A           10 GAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             CCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            899999999999999 999999999        3567888764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.44  E-value=0.12  Score=49.07  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+. .+||.+.
T Consensus        12 G~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A           12 GSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             CCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            89999999999999999999999975 6788654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=94.30  E-value=0.027  Score=55.93  Aligned_cols=51  Identities=24%  Similarity=0.265  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.+++.|++|+++++|++|.  + +   .|+ .+|+++.+|.||++++..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV--D-G---VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE--T-T---EEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE--C-C---EEEECCCCEEEcCEEEECcCCC
Confidence            4677888899999999999999999998  4 4   466 788899999999998854

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=94.30  E-value=0.03  Score=56.13  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.|+  +|+|+|+.+.++
T Consensus        11 GgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A           11 GTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             CCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             cCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            899999999999999998  799999987643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.30  E-value=0.02  Score=58.40  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++|+++++|++|.. + +++..|..+|+++.+|.||++++...
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~-~~v~~v~~~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG-N-GKVEKIITDKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC-S-SSCCEEEESSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C-CcEEEEEECCcEEECCEEEECCCCCc
Confidence            46788889999999999999999999986 3 55555556777899999999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.26  E-value=0.023  Score=57.07  Aligned_cols=51  Identities=16%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eC-----CeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TN-----GLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~-----g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.+++.|++++++++|++|..+   +++ +.   .+     ++++.+|.||++.+
T Consensus       208 ~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~---~v~-~~~~~~~g~~~~~~~i~~D~vv~~~g  266 (437)
T 3sx6_A          208 GDSKGILTKGLKEEGIEAYTNCKVTKVEDN---KMY-VTQVDEKGETIKEMVLPVKFGMMIPA  266 (437)
T ss_dssp             TTHHHHHHHHHHHTTCEEECSEEEEEEETT---EEE-EEEECTTSCEEEEEEEECSEEEEECC
T ss_pred             hHHHHHHHHHHHHCCCEEEcCCEEEEEECC---eEE-EEecccCCccccceEEEEeEEEEcCC
Confidence            346677888899999999999999999642   221 22   23     56789999998864

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=94.20  E-value=0.018  Score=59.39  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             HHHHHHHCCcEEEeCceeeEEEECCC--CCeEEEE-e--CCe--EE---EcCEEEEcCChHHH
Q psy893          236 LARSAQASGAQLFTSQTVTEITLDSD--KRASGVV-T--NGL--EI---KAKYVLSNTTAKCT  288 (523)
Q Consensus       236 l~~~~~~~G~~i~~~~~V~~I~~~~~--~~~~~v~-~--~g~--~~---~ad~vI~a~~~~~~  288 (523)
                      +.+.+++.|++|++++.|++|..+++  +++++|+ .  +|+  ++   .++.||+|++...+
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~s  262 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGT  262 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCC
Confidence            33334567899999999999999762  3788998 4  465  34   46789999998765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.20  E-value=0.094  Score=53.89  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=32.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus        50 GgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           50 GGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            8999999999999999999999999988898764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.16  E-value=0.026  Score=55.53  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|++|              |+++.+|.||++++...
T Consensus       188 ~~~~~~~~~~l~~~gV~~~~~~~v~~i--------------g~~~~~D~vv~a~G~~p  231 (385)
T 3klj_A          188 RDGGLFLKDKLDRLGIKIYTNSNFEEM--------------GDLIRSSCVITAVGVKP  231 (385)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCGGGC--------------HHHHHHSEEEECCCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEc--------------CeEEecCeEEECcCccc
Confidence            467778888898999999999999877              23568999999988654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.12  E-value=0.03  Score=56.15  Aligned_cols=52  Identities=6%  Similarity=0.082  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|+++..   .   .|. .+|+++.+|.||++++...
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~---~---~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAING---N---EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEET---T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecC---C---eeeecCCeEEeeeeEEEEeceec
Confidence            45677888899999999999999998863   2   255 7888999999999988543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.12  E-value=0.09  Score=53.44  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||+.|+++|++|+|+|| +.+||.|.
T Consensus        33 GgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           33 GSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            8999999999999999999999999 67888764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.04  E-value=0.031  Score=55.41  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~   32 (523)
                      |||++||++|+.|+++  |++|+|+|++...+|.
T Consensus        43 GaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           43 GAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            8999999999999999  9999999998765554

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.99  E-value=0.11  Score=53.08  Aligned_cols=33  Identities=33%  Similarity=0.445  Sum_probs=31.0

Q ss_pred             CCChhHHHHHHHHHHc---CCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARA---GLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~---G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||+.|++.   |++|+|+|+++ +||.+.
T Consensus         9 GgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            9 GGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            8999999999999999   99999999998 899764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=93.94  E-value=0.12  Score=52.53  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus        18 GgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           18 GGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             CCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             cCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            89999999999999999999999997 5888764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.83  E-value=0.12  Score=51.91  Aligned_cols=30  Identities=13%  Similarity=0.350  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.  |++|+|+|+++.+|
T Consensus         9 GgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            9 GASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            8999999999999998  89999999999887

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.81  E-value=0.12  Score=52.02  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus        11 GgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A           11 GGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            89999999999999999999999998 6788764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=93.78  E-value=0.036  Score=56.58  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ..+.+.+.+.++++|++|++++.|++|..++ +++ .|+ .+|+++.||.||++++..
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~-~~~-~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKL-LIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CeE-EEEECCCCEEECCEEEECCCCC
Confidence            4677888899999999999999999998765 544 566 788899999999998865

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=93.64  E-value=0.14  Score=52.84  Aligned_cols=29  Identities=24%  Similarity=0.507  Sum_probs=26.8

Q ss_pred             CCChhHHHHHHHHHH---cCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLAR---AGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~V~vlE~~~~~   29 (523)
                      |||++|+++|+.|++   +|++|+|+|+...+
T Consensus        12 GgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A           12 GGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            899999999999999   99999999997643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.56  E-value=0.13  Score=50.56  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++++++|++|..++ +. ..|+ .+|+++.+|.||++++...
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEECCCCEEECCEEEECcCCCc
Confidence            4678889999999999999999999998765 43 3566 7888899999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.54  E-value=0.042  Score=54.02  Aligned_cols=27  Identities=11%  Similarity=0.118  Sum_probs=24.8

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~   27 (523)
                      |||++||+||..|++.|  .+|+|+|++.
T Consensus        11 G~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A           11 GTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            89999999999999999  4699999875

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=93.51  E-value=0.15  Score=47.72  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|+++ |.+|+|+||++.+||.+
T Consensus        46 GgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           46 GAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             CCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             CccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            8999999999999997 99999999999888743

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=93.46  E-value=0.12  Score=52.61  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++|++||..|+++  |.+|+|+|+++.++
T Consensus        18 GgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           18 GGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            8999999999999887  89999999998764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=93.45  E-value=0.042  Score=54.30  Aligned_cols=48  Identities=10%  Similarity=0.047  Sum_probs=37.9

Q ss_pred             HHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          236 LARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       236 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      +.+.+++.|+++++++.|..+..+. +.. .|+ .+|+++.+|.||++.+.
T Consensus       208 ~~~~l~~~gi~v~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          208 YGFGTENALIEWHPGPDAAVVKTDT-EAM-TVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             SCTTSTTCSEEEECTTTTCEEEEET-TTT-EEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHhcCcEEEeCceEEEEEecc-cce-EEEcCCCcEEEeeEEEEecCc
Confidence            3344567899999999999999876 433 466 88999999999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.22  E-value=0.19  Score=51.31  Aligned_cols=33  Identities=36%  Similarity=0.600  Sum_probs=30.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||..|++.|++|+|+|++. +||.|.
T Consensus         9 GgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~   41 (500)
T 1onf_A            9 GGGSGGMAAARRAARHNAKVALVEKSR-LGGTCV   41 (500)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEeCCC-cCcccc
Confidence            899999999999999999999999985 788764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.07  E-value=0.24  Score=50.89  Aligned_cols=28  Identities=29%  Similarity=0.520  Sum_probs=26.4

Q ss_pred             CCChhHHHHHHHHHH------------cCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLAR------------AGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~------------~G~~V~vlE~~~~   28 (523)
                      |||++||+||..|++            +|++|+|+|+.+.
T Consensus        14 GgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A           14 GGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            899999999999999            9999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=93.05  E-value=0.047  Score=54.63  Aligned_cols=53  Identities=15%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC--CeEEEcCEEEEcCCh
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN--GLEIKAKYVLSNTTA  285 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~--g~~~~ad~vI~a~~~  285 (523)
                      .....+.+.+.++++|+++++++.|++|+.   +++ .+. .+  ++++.+|.||++++.
T Consensus       199 ~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~---~~~-~~~~~~g~~~~i~~d~vi~~~G~  254 (430)
T 3hyw_A          199 IGASKRLVEDLFAERNIDWIANVAVKAIEP---DKV-IYEDLNGNTHEVPAKFTMFMPSF  254 (430)
T ss_dssp             STTHHHHHHHHHHHTTCEEECSCEEEEECS---SEE-EEECTTSCEEEEECSEEEEECEE
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCceEEEEeC---Cce-EEEeeCCCceEeecceEEEeccC
Confidence            345566677888899999999999999853   333 233 33  357999999998764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=92.83  E-value=0.071  Score=54.57  Aligned_cols=58  Identities=17%  Similarity=0.191  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCC-CeEEEE-e--CC-----eEEEcCEEEEcCChHHH
Q psy893          231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDK-RASGVV-T--NG-----LEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~-~~~~v~-~--~g-----~~~~ad~vI~a~~~~~~  288 (523)
                      ....++...+++.| ++|++++.|++|..++++ ++++|+ .  +|     .++.|+.||++++...+
T Consensus       227 s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~s  294 (507)
T 1coy_A          227 SLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGT  294 (507)
T ss_dssp             CTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHH
T ss_pred             ChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCC
Confidence            33445555555665 999999999999997534 688888 4  56     36789999999999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.76  E-value=0.17  Score=50.84  Aligned_cols=34  Identities=38%  Similarity=0.647  Sum_probs=32.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         8 G~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            8 GAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            8999999999999999999999999988999764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.62  E-value=0.23  Score=47.36  Aligned_cols=53  Identities=9%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             HHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eC-----CeEEEcCEEEEcCChHH
Q psy893          234 QALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TN-----GLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       234 ~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~-----g~~~~ad~vI~a~~~~~  287 (523)
                      +.+.+.+.+. |+++++++.|.+|..++ +++.+|+ .+     ++++.+|.||++++...
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence            4456666665 99999999999999887 7777777 44     35789999999988653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=92.61  E-value=0.062  Score=55.66  Aligned_cols=53  Identities=17%  Similarity=0.130  Sum_probs=39.4

Q ss_pred             HHHCCcEEEeCceeeEEEEC---CC-CCeEEEE-e--CC-e--EEEc-CEEEEcCChHHHHHhhC
Q psy893          240 AQASGAQLFTSQTVTEITLD---SD-KRASGVV-T--NG-L--EIKA-KYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       240 ~~~~G~~i~~~~~V~~I~~~---~~-~~~~~v~-~--~g-~--~~~a-d~vI~a~~~~~~~~~ll  293 (523)
                      +.+.+.+|++++.|++|..+   ++ ++++||+ .  +| +  ++.| +.||+++++..+ .+||
T Consensus       218 ~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~S-PqlL  281 (566)
T 3fim_B          218 QSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGT-PILL  281 (566)
T ss_dssp             TTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHH-HHHH
T ss_pred             ccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCC-hHHH
Confidence            34568999999999999987   32 4788998 3  34 3  5778 569999998776 3443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=92.57  E-value=0.23  Score=50.49  Aligned_cols=30  Identities=13%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             CCChhHHHHHHHHHHcC---CcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAG---LSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G---~~V~vlE~~~~~G   30 (523)
                      |||++|++||..|++.|   ++|+|+|+++.+|
T Consensus        42 GaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           42 GANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            89999999999999988   9999999988765

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.40  E-value=0.21  Score=47.93  Aligned_cols=33  Identities=36%  Similarity=0.617  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||++|..|+++|++|+|+|+++.+||..
T Consensus        10 G~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~   42 (357)
T 4a9w_A           10 GGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW   42 (357)
T ss_dssp             CCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGG
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            899999999999999999999999999998864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=92.32  E-value=0.25  Score=49.79  Aligned_cols=33  Identities=39%  Similarity=0.580  Sum_probs=30.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus        11 GgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A           11 GGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            89999999999999999999999998 6888764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=92.09  E-value=0.31  Score=48.15  Aligned_cols=30  Identities=23%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~G   30 (523)
                      |||++|++||..|++.|+  +|+|+|+++.++
T Consensus        14 G~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A           14 GAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            899999999999999998  499999988654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.01  E-value=0.047  Score=50.26  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             CCCCCCCeEecCCCCCCCCCCCCc--cHHHHHHHHHHHhc
Q psy893          485 PFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  522 (523)
Q Consensus       485 ~~t~i~~LylaG~~~~pg~g~~~a--sG~~aA~~i~~~~~  522 (523)
                      ..+..+|||+|||++. |+|+.+|  ||+.||++|++.|.
T Consensus       290 ~~~~~~~v~l~GDa~~-g~gv~~A~~sG~~aA~~I~~~L~  328 (336)
T 3kkj_A          290 LSDADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLEHLQ  328 (336)
T ss_dssp             EEETTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeCCCCEEEEecccC-CcCHHHHHHHHHHHHHHHHHHhh
Confidence            3456789999999974 5678766  99999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.90  E-value=0.38  Score=48.40  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|| +.+||.|.
T Consensus        12 GaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A           12 GGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            8999999999999999999999999 77898764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=91.90  E-value=0.099  Score=54.49  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             HHHCCcEEEeCceeeEEEECCC---CCeEEEE-e--CCe--EEEc-CEEEEcCChHHH
Q psy893          240 AQASGAQLFTSQTVTEITLDSD---KRASGVV-T--NGL--EIKA-KYVLSNTTAKCT  288 (523)
Q Consensus       240 ~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~-~--~g~--~~~a-d~vI~a~~~~~~  288 (523)
                      .++.|.+|++++.|++|..+++   +++++|+ .  +|+  ++.| +.||++++...+
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~s  298 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAIS  298 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCC
Confidence            3456899999999999998642   3788887 4  565  5678 789999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=91.88  E-value=0.093  Score=54.22  Aligned_cols=56  Identities=25%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             HHHHHHHHH-HCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcC-EEEEcCChHHH
Q psy893          233 SQALARSAQ-ASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAK-YVLSNTTAKCT  288 (523)
Q Consensus       233 ~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad-~vI~a~~~~~~  288 (523)
                      ..++.+.+. +.|++|++++.|++|..++++++++|+ .+   |+  ++.|+ .||+|++...+
T Consensus       211 ~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~s  274 (546)
T 2jbv_A          211 SVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDT  274 (546)
T ss_dssp             HHHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCC
Confidence            334444333 468999999999999997546788888 43   53  67898 89999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=91.58  E-value=0.36  Score=45.67  Aligned_cols=53  Identities=23%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+++.|++++++++|++|..++ +++.+|+ .   +|+  ++.+|.||++++...
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVFIYVGLIP  252 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEEEeeCCcc
Confidence            345666778899999999999999876 6666676 4   675  689999999987543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=91.57  E-value=0.12  Score=52.75  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=26.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||.+|+++|.+|++.|++|+|+|+...
T Consensus        18 G~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           18 GSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            8999999999999999999999999764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=91.54  E-value=0.084  Score=54.35  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|++.|++|+|+|+.+.++++.
T Consensus       114 GgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~  146 (549)
T 3nlc_A          114 GFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT  146 (549)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEEccCcccccc
Confidence            899999999999999999999999998887654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=91.34  E-value=0.5  Score=47.58  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus        11 GgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A           11 GSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            89999999999999999999999998 6888764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=91.23  E-value=0.62  Score=47.13  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG   31 (523)
                      |||++|++||..|++.  |.+|+|+|+++.+++
T Consensus        43 G~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   75 (480)
T 3cgb_A           43 GGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY   75 (480)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred             CCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence            8999999999999996  899999999987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=91.00  E-value=0.66  Score=46.83  Aligned_cols=33  Identities=33%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||..|++.|++|+|+|+++.+||..
T Consensus        10 GgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A           10 GAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            899999999999999999999999998777764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=90.98  E-value=0.59  Score=47.17  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        13 GgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A           13 GSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            8999999999999999999999999989999764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=90.91  E-value=0.64  Score=46.83  Aligned_cols=34  Identities=32%  Similarity=0.588  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         9 GgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            9 GGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            8999999999999999999999999989999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=90.86  E-value=0.46  Score=45.88  Aligned_cols=55  Identities=16%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+.+.+.+.+++.|++++++++|+.|..++ +..+.|+ .+|+++.+|+||+|++..
T Consensus        75 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           75 DLVESLWAQAERYNPDVVLNETVTKYTKLD-DGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             HHHHHHHHHHHTTCCEEECSCCEEEEEECT-TSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHhCCEEEcCCEEEEEEECC-CceEEEEECCCcEEEeeEEEEccCCC
Confidence            455667777778899999999999999876 4234566 677789999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=90.85  E-value=0.45  Score=48.20  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLER   25 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~   25 (523)
                      |||++||+||..|++.|++|+|+||
T Consensus        16 GgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A           16 GGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            8999999999999999999999995

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=90.74  E-value=0.7  Score=43.94  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e---CC--eEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T---NG--LEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g--~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|+++++++.|.+|..+  +++.+|+ .   +|  +++.+|.||++++...
T Consensus       191 ~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2zbw_A          191 EASVKELMKAHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELALEVDAVLILAGYIT  252 (335)
T ss_dssp             HHHHHHHHHHHHTTSSEEETTEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHHHHhccccCCeEEecCCcceeEccC--CCeeEEEEEECCCCceEEEecCEEEEeecCCC
Confidence            456777888888889999999999999874  5555566 4   77  5789999999988653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=90.72  E-value=0.45  Score=47.60  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.  |++|+|+|+++.+|
T Consensus         7 G~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            7 GSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            8999999999999998  99999999998775

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=90.70  E-value=0.52  Score=48.75  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.  |++|+|+|+++.++
T Consensus         8 GgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            8 GGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            8999999999999998  89999999999876

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=90.62  E-value=0.52  Score=47.62  Aligned_cols=34  Identities=35%  Similarity=0.576  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        12 GgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A           12 GGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            8999999999999999999999999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.49  E-value=0.36  Score=45.38  Aligned_cols=49  Identities=18%  Similarity=0.272  Sum_probs=39.5

Q ss_pred             HHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      +.+++.|++++++++|.+|..++ +++.+|+ .  +|+  ++.+|.||++++...
T Consensus       191 ~~~~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          191 KVKKNEKIELITSASVDEVYGDK-MGVAGVKVKLKDGSIRDLNVPGIFTFVGLNV  244 (315)
T ss_dssp             HHHHCTTEEEECSCEEEEEEEET-TEEEEEEEECTTSCEEEECCSCEEECSCEEE
T ss_pred             HHHhcCCeEEEeCcEEEEEEcCC-CcEEEEEEEcCCCCeEEeecCeEEEEEcCCC
Confidence            33457899999999999999876 6777777 5  775  789999999988543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.15  E-value=0.45  Score=49.52  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~G   30 (523)
                      |||++||+||..|++.  |++|+|+|+++.+|
T Consensus        43 GgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           43 GGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            8999999999999998  89999999999865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=90.10  E-value=0.66  Score=46.67  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++ +||.|.
T Consensus        13 G~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A           13 GTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            899999999999999999999999988 888763

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=90.02  E-value=0.76  Score=46.19  Aligned_cols=33  Identities=39%  Similarity=0.599  Sum_probs=30.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus        10 GaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A           10 GAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            89999999999999999999999998 6888764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=89.76  E-value=0.51  Score=44.69  Aligned_cols=55  Identities=11%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      ...+.+.+.+.+++.|++++++++|++|..++ +..+.|. .+|+ +.+|+||+|++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           66 AQELINNLKEQMAKFDQTICLEQAVESVEKQA-DGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHHHHTTSCCEEECSCCEEEEEECT-TSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCcEEccCEEEEEEECC-CCcEEEEECCCE-EEeCEEEECCCC
Confidence            35788888888888999999999999999886 4334566 5564 999999999987

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=89.59  E-value=0.36  Score=47.68  Aligned_cols=31  Identities=19%  Similarity=0.136  Sum_probs=28.5

Q ss_pred             CCChhHHHHHHHHHH---cCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLAR---AGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~V~vlE~~~~~GG   31 (523)
                      |||++||+||..|++   .|++|+|+|+++..+.
T Consensus         8 GgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~   41 (409)
T 3h8l_A            8 GGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF   41 (409)
T ss_dssp             CSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE
T ss_pred             CCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCcee
Confidence            899999999999999   8999999999986544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.47  E-value=0.64  Score=46.62  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=30.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus        10 GgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A           10 GAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            89999999999999999999999998 7888764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=89.47  E-value=0.41  Score=49.93  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC-CCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH-VLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~-~~GG   31 (523)
                      |||++|++||+.|++.|.+|+|+|++. .+|+
T Consensus        28 GgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           28 GAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            899999999999999999999999974 3443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=88.95  E-value=0.42  Score=48.39  Aligned_cols=34  Identities=38%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        13 GaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A           13 GGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            8999999999999999999999999999998764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=88.78  E-value=0.55  Score=48.37  Aligned_cols=29  Identities=38%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||.+|+++|.+|+++|++|+|||+....
T Consensus        14 G~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A           14 GAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            89999999999999999999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=88.44  E-value=0.82  Score=44.08  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=29.9

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||..|++.|+ +|+|+|+++ +||.+
T Consensus        11 GaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~   43 (369)
T 3d1c_A           11 GAGAAGIGMAITLKDFGITDVIILEKGT-VGHSF   43 (369)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHH
T ss_pred             CcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcc
Confidence            899999999999999999 999999998 88854

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=88.42  E-value=0.92  Score=42.50  Aligned_cols=51  Identities=14%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             HHHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce--EEEcCEEEEcCChH
Q psy893          235 ALARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-TN---GL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       235 ~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~--~~~ad~vI~a~~~~  286 (523)
                      .+.+.+++ .|++++++++|++|..++ +++.+|+ .+   |+  ++.+|.||++++..
T Consensus       184 ~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  241 (310)
T 1fl2_A          184 VLQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIGLL  241 (310)
T ss_dssp             HHHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             HHHHHHhhCCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence            35566666 699999999999999876 7776676 43   53  68999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.38  E-value=0.91  Score=45.66  Aligned_cols=34  Identities=32%  Similarity=0.585  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        13 GaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A           13 GGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            8999999999999999999999999988999764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=88.33  E-value=0.91  Score=46.60  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC--------CCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH--------VLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~   33 (523)
                      |||.+|++||.++++.|.+|+|+|+..        .+||.|
T Consensus        49 G~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtC   89 (542)
T 4b1b_A           49 GGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTC   89 (542)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcc
Confidence            899999999999999999999999754        367765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=88.01  E-value=1.3  Score=44.81  Aligned_cols=34  Identities=38%  Similarity=0.510  Sum_probs=30.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEcc--------CCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLER--------RHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~--------~~~~GG~~~   34 (523)
                      |||.+||+||..|++.|++|+|+||        ...+||.|.
T Consensus        13 G~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A           13 GGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            8999999999999999999999998        456787663

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=87.99  E-value=1.2  Score=45.03  Aligned_cols=33  Identities=42%  Similarity=0.573  Sum_probs=30.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+|++ .+||.|.
T Consensus        27 GgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~   59 (478)
T 3dk9_A           27 GGGSGGLASARRAAELGARAAVVESH-KLGGTCV   59 (478)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence            89999999999999999999999976 6788764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=87.66  E-value=1.2  Score=45.15  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=32.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|++.|++|+|+||++.+||.|.
T Consensus        32 GgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           32 GSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            8999999999999999999999999999999764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.50  E-value=0.63  Score=47.23  Aligned_cols=33  Identities=36%  Similarity=0.485  Sum_probs=31.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++ ++|+|+|+++.+||.+.
T Consensus       115 GgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          115 GGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             CCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             CccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            8999999999999999 99999999999999865

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=87.35  E-value=0.98  Score=47.51  Aligned_cols=30  Identities=27%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             CCChhHHHHHHHHHH-cCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLAR-AGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~-~G~~V~vlE~~~~~G   30 (523)
                      |||++||++|+.|++ .|.+|+|+||++.++
T Consensus        39 GaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           39 GCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             CCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            899999999999999 999999999987654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=87.01  E-value=0.91  Score=44.71  Aligned_cols=31  Identities=35%  Similarity=0.464  Sum_probs=28.6

Q ss_pred             CCChhHHHHHHHHHHcCCc-EEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLS-VAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~-V~vlE~~~~~GG   31 (523)
                      |||++||++|..|+++|.+ |+|+||++.++.
T Consensus        11 GaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A           11 GAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             CCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            8999999999999999999 999999887643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=86.92  E-value=0.42  Score=50.89  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      +...+.+.+++.|++|+++++|++|..++ ..+..+. .+++++.+|.||++++..
T Consensus       569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~i~aD~VV~A~G~~  623 (690)
T 3k30_A          569 EVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVTARL  623 (690)
T ss_dssp             CHHHHHHHHHHTTCEEEESEEEEEEETTE-EEEEETTTCCEEEEECSEEEEESCEE
T ss_pred             hHHHHHHHHHHCCCEEEcCcEEEEEECCe-EEEEEccCCeEEEEECCEEEECCCCC
Confidence            45677888899999999999999998543 2111111 245689999999998864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=86.48  E-value=0.69  Score=47.02  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||++|..|++.|++|+|+|+++.+|++
T Consensus        99 GgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           99 GAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            89999999999999999999999999887654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=86.44  E-value=0.33  Score=47.70  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++||++|..|+++|++|+|+||++.++.
T Consensus        33 GaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   63 (398)
T 2xdo_A           33 GGGPVGLTMAKLLQQNGIDVSVYERDNDREA   63 (398)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEEECSSSTTC
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEeCCCCccc
Confidence            8999999999999999999999999887654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=86.41  E-value=1.2  Score=41.86  Aligned_cols=55  Identities=15%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ...+.+.+.+.+++.|+++++ ++|.+|..++ +.+ .|. .+|+++.+|+||+|++..
T Consensus        69 ~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~-~~~-~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           69 ASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG-DEF-VVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC---CE-EEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC-CEE-EEEECCCCEEEcCEEEECcCCC
Confidence            357888888989899999999 9999999876 543 466 677899999999999876

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=86.29  E-value=1.3  Score=41.52  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=38.3

Q ss_pred             HHHHHHH-CCcEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCChH
Q psy893          236 LARSAQA-SGAQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       236 l~~~~~~-~G~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~~~  286 (523)
                      +.+.+.+ .|++++++++|++|..++ +++.+|+ .   +|+  ++.+|.||++++..
T Consensus       184 ~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  240 (311)
T 2q0l_A          184 TLEHAKNNDKIEFLTPYVVEEIKGDA-SGVSSLSIKNTATNEKRELVVPGFFIFVGYD  240 (311)
T ss_dssp             HHHHHHTCTTEEEETTEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             HHHHHhhCCCeEEEeCCEEEEEECCC-CcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence            4555554 699999999999998875 5555566 4   675  68999999998754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=86.15  E-value=0.81  Score=48.20  Aligned_cols=30  Identities=10%  Similarity=0.066  Sum_probs=27.5

Q ss_pred             CCChhHHHHHHHHHHc------CCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARA------GLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~------G~~V~vlE~~~~~G   30 (523)
                      |||++||+||+.|+++      |.+|+||||....+
T Consensus        29 G~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~   64 (662)
T 3gyx_A           29 GGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER   64 (662)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT
T ss_pred             CCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC
Confidence            8999999999999998      99999999987643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=85.87  E-value=1.4  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=32.6

Q ss_pred             CCChhHHHHHHHHHH---cCCc---EEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLAR---AGLS---VAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~---V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|++   .|++   |+|+|+++.+||.+..
T Consensus         9 GaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            9 GAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            899999999999999   9999   9999999999997653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=85.84  E-value=0.55  Score=45.94  Aligned_cols=32  Identities=13%  Similarity=-0.010  Sum_probs=29.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++..+
T Consensus       153 GgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          153 GGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            89999999999999999999999999876543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=85.76  E-value=2.9  Score=39.56  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEeCceeeEEEECC--C-C--CeEEEE
Q psy893          229 MGAVSQALARSAQAS-GAQLFTSQTVTEITLDS--D-K--RASGVV  268 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~--~-~--~~~~v~  268 (523)
                      ...+...|.+.+.+. |++++.+++|++|..++  + +  ++++|.
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVv  190 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVV  190 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEE
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEE
Confidence            457788888888885 99999999999999874  2 4  788876

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=85.55  E-value=0.58  Score=48.20  Aligned_cols=29  Identities=31%  Similarity=0.305  Sum_probs=26.9

Q ss_pred             CCChhHHHHHHHHHHc-CCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARA-GLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~-G~~V~vlE~~~~~   29 (523)
                      |||.+|+++|.+|+++ |.+|+|||+....
T Consensus        20 G~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           20 GGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            8999999999999998 8999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=85.16  E-value=2.2  Score=43.17  Aligned_cols=33  Identities=15%  Similarity=0.193  Sum_probs=30.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||..|++.|++|+|+|++. +||.|.
T Consensus        15 GgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A           15 GTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             CCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            899999999999999999999999975 888764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=85.11  E-value=1.4  Score=45.20  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHCC--cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASG--AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.+  .+|+++++|+++..++++..+.|+ .+|++++||.||+|++...
T Consensus        94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           94 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  154 (542)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCC
Confidence            345555556566655  679999999999987533445677 7788899999999999753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=84.89  E-value=1.1  Score=45.05  Aligned_cols=33  Identities=27%  Similarity=0.542  Sum_probs=31.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||..|++.|++|+|+|+ +.+||.|.
T Consensus        12 G~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A           12 GGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            8999999999999999999999999 77899875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=84.51  E-value=2.2  Score=40.17  Aligned_cols=56  Identities=25%  Similarity=0.175  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEEC--CCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLD--SDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++. .+|.+|..+  + +..+.|. .+|+++.+|+||+|++...
T Consensus        65 ~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~-~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           65 MELAQRMHQQAEKFGAKVEM-DEVQGVQHDATS-HPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTS-SSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCC-CceEEEEECCCCEEEeCEEEECcCCCc
Confidence            46777888888899999987 689999887  4 3323455 7788999999999999753

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=84.28  E-value=2.3  Score=40.60  Aligned_cols=59  Identities=20%  Similarity=0.304  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHH-CCcEEEeCceeeEEEECCC----------------C--CeEEEE-e--------------CCeEE
Q psy893          229 MGAVSQALARSAQA-SGAQLFTSQTVTEITLDSD----------------K--RASGVV-T--------------NGLEI  274 (523)
Q Consensus       229 ~~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~----------------~--~~~~v~-~--------------~g~~~  274 (523)
                      ...+.+.|.+.+.+ .|++|+.++.|++|..+++                +  ++.+|. .              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            45677889988888 4999999999999987651                2  666765 2              22478


Q ss_pred             EcCEEEEcCChHH
Q psy893          275 KAKYVLSNTTAKC  287 (523)
Q Consensus       275 ~ad~vI~a~~~~~  287 (523)
                      +|+.||.|++...
T Consensus       239 ~Ak~VV~ATG~~s  251 (344)
T 3jsk_A          239 NAPVIISTTGHDG  251 (344)
T ss_dssp             ECSEEEECCCSSS
T ss_pred             EcCEEEECCCCCc
Confidence            9999999988654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.22  E-value=0.93  Score=45.16  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=26.8

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~G   30 (523)
                      |||.+|++||..|++.|  .+|+|+|+++..+
T Consensus         7 G~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            7 GAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            89999999999999998  4799999987654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=83.95  E-value=0.68  Score=46.41  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=25.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |.|.+|+++|..|+++|++|++.|++.
T Consensus        16 G~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           16 GLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             eeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            789999999999999999999999865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=83.91  E-value=1.8  Score=40.91  Aligned_cols=55  Identities=22%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.+.+.+++.|++++.++ |..|..++ +.+ .|+.+|+++++|.||+|++.+.
T Consensus        70 ~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~-~~~-~v~~~~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           70 VELTDKFRKQSERFGTTIFTET-VTKVDFSS-KPF-KLFTDSKAILADAVILAIGAVA  124 (333)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-CCEEECSS-SSE-EEECSSEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEeE-EEEEEEcC-CEE-EEEECCcEEEcCEEEECCCCCc
Confidence            4677888888889999999987 99998876 543 3445677899999999999764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=83.61  E-value=1.3  Score=44.31  Aligned_cols=56  Identities=13%  Similarity=-0.106  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce---EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL---EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~---~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.+..|+++++|++|..++ +++ .|+ .+   |+   ++.+|.||+|++.+.
T Consensus       115 ~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~~-~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          115 HTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GSW-VVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TEE-EEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-CeE-EEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            4566677777777778899999999998876 543 455 43   66   789999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=83.29  E-value=2.2  Score=42.50  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~   32 (523)
                      |||++||+||..|++.  |++|+|+|+.+.+++.
T Consensus        10 GgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~   43 (449)
T 3kd9_A           10 GGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA   43 (449)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred             CCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC
Confidence            8999999999999998  8899999999987654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=83.17  E-value=0.29  Score=49.85  Aligned_cols=33  Identities=15%  Similarity=-0.046  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |+|++||++|+.|.++|...+++|+.+..|+.-
T Consensus        46 GaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~   78 (501)
T 4b63_A           46 GFGPASLAIAIALHDALDPRLNKSASNIHAQPK   78 (501)
T ss_dssp             CCSHHHHHHHHHHHHHHCTTTCTTC----CCCC
T ss_pred             cccHHHHHHHHHHHhcCCCceEEeccccCCCcc
Confidence            899999999999999999999999888777643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=82.87  E-value=2  Score=43.85  Aligned_cols=38  Identities=13%  Similarity=-0.029  Sum_probs=27.9

Q ss_pred             CCCCCCCCeEecCCCCCCCC-CCCCc--cHHHHHHHHHHHh
Q psy893          484 SPFTLIPHLLLCGSGAHPGG-GVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       484 ~~~t~i~~LylaG~~~~pg~-g~~~a--sG~~aA~~i~~~~  521 (523)
                      ..+|.+||+|.+||.+.... -+..|  .|..||..|.+.|
T Consensus       475 ~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L  515 (521)
T 1hyu_A          475 KCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL  515 (521)
T ss_dssp             TCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHH
Confidence            45788999999999985321 12222  8999999988766

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=82.87  E-value=1  Score=36.69  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=25.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|-.|...|..|+++|++|+++|+++
T Consensus        13 G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A           13 GSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            889999999999999999999999865

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.78  E-value=0.89  Score=37.84  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|..|...|..|.+.|++|++++++..
T Consensus        26 G~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           26 GCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            8999999999999999999999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=82.59  E-value=0.73  Score=43.37  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=26.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       152 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          152 GGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            89999999999999999999999988765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.21  E-value=1  Score=36.28  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=25.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|..|...|..|++.|++|+++|++.
T Consensus        11 G~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A           11 GIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            899999999999999999999999854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=82.13  E-value=0.93  Score=43.98  Aligned_cols=31  Identities=35%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus       150 GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          150 GGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             ECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            7999999999999999999999999887654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=81.76  E-value=0.72  Score=46.00  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=27.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |.|.+|+++|..|+++|++|++.|.+...-|
T Consensus        12 G~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~   42 (439)
T 2x5o_A           12 GLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (439)
T ss_dssp             CCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred             eecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence            8899999999999999999999999876543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=81.55  E-value=2  Score=41.97  Aligned_cols=29  Identities=31%  Similarity=0.420  Sum_probs=27.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+++|++|+||||++.+
T Consensus         8 GaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            8 GAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            89999999999999999999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=81.49  E-value=1.2  Score=36.25  Aligned_cols=28  Identities=18%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |.|-.|...|..|.+.|++|+++|+++.
T Consensus        14 G~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A           14 GYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            8899999999999999999999999763

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=80.19  E-value=2.7  Score=43.20  Aligned_cols=31  Identities=23%  Similarity=0.147  Sum_probs=28.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++||++|..|+++|.+|+|+||++.++.
T Consensus        33 GaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           33 GGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            8999999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-28
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-27
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-21
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	5e-20
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-19
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-13
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-12
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-09
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	8e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	1e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	1e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	5e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.001
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.001
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	0.002
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.002
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.002
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.002
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.002
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.003
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.004

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 2e-28
 Identities = 39/293 (13%), Positives = 85/293 (29%), Gaps = 15/293 (5%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIY-- 59
            G    + +  L+  G  V  ++++   GG A +  +   ++  + + +    R   +  
Sbjct: 13  TGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGK 72

Query: 60  -KDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNF 118
            +D  +      L+     +   +  D                       +  +      
Sbjct: 73  DRDWNVDLIPKFLMANGELTNILIHTDVTRYVD------FKQVSGSYVFKQGKIYKVPAN 126

Query: 119 EKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFE 178
           E        +                +    +L T +G   D  ++        L +  +
Sbjct: 127 EIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTK 186

Query: 179 SEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALAR 238
                   +        +   +  +   +L +    A   K  + YP  G+G + Q  AR
Sbjct: 187 E--FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFAR 244

Query: 239 SAQASGAQLFTSQTVTEITLDSD-KRASGVVTNGLEIKAKYVLSNTTA---KC 287
            +   G        + E+    D  +  GV T     KA  V+++ T    KC
Sbjct: 245 LSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC 297

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (271), Expect = 6e-27
 Identities = 35/283 (12%), Positives = 82/283 (28%), Gaps = 9/283 (3%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G    + +  ++  G  V  ++R    GG + +   +                    +D
Sbjct: 14  TGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRD 73

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
             +     K L  + +    L   + T       +         +I +    + +     
Sbjct: 74  WNV-DLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASN 132

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
              + E       L  +A  D  +   +     +                        + 
Sbjct: 133 LMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVY------RKFDLGQDVIDF 186

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQ 241
               L        +  P   + + + L+       G K  + YP  G+G + Q  AR + 
Sbjct: 187 TGHALALYRTDDYLDQPCLETINRIKLYSESLARYG-KSPYLYPLYGLGELPQGFARLSA 245

Query: 242 ASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTT 284
             G     ++ V +I ++ + +  GV + G   + K ++ + +
Sbjct: 246 IYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPS 287

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 92.5 bits (228), Expect = 4e-21
 Identities = 48/334 (14%), Positives = 89/334 (26%), Gaps = 25/334 (7%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G +GL  A +L   G    +LE    LGGA  T   + G+   +         P     
Sbjct: 8   GGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRAL 66

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
                   ++   DP +       +   ++   +       +   +        + F + 
Sbjct: 67  AAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRR 126

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
                + +        +       LL            +  S+                 
Sbjct: 127 APEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSV-----------AATFPM 175

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQ 241
           L         +         +     L    G A  + GA +  +GG+  +  ALA S  
Sbjct: 176 LVKMEREHRSLILGAIRAQKAQRQAALP--AGTAPKLSGALSTFDGGLQVLIDALAASLG 233

Query: 242 ASGAQLFTSQTVTEITLDSDKRASGVVTNG--LEIKAKYVLSNTTAKCTLLDLIPKGNLD 299
                      V  +  +       +  +G   E+    V+    A      L+    LD
Sbjct: 234 ---DAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH-ATAKLLR--PLD 287

Query: 300 ERTTQAVQSID---YASPVTKINVALKSIPNFLA 330
           +     V  I    +   V  I+ AL+ +P    
Sbjct: 288 DALAALVAGIYNLGHLERVAAIDAALQRLPGLHL 321

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (221), Expect = 5e-20
 Identities = 61/394 (15%), Positives = 106/394 (26%), Gaps = 39/394 (9%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G +G+ +A  L  +GL+V VLE R  +GG   T               +   +  I + 
Sbjct: 7   GGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR- 65

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
              K+ GL+    +            +   +     +     Y     F         + 
Sbjct: 66  -LAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 124

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
                       P       ++ N+ M  L  +    +    L T      +        
Sbjct: 125 PS--------DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVS 176

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQ 241
               L      G      S +                 G      GG G VS+   R   
Sbjct: 177 ALWFLWYVKQCGGTTRIISTTNG---------------GQERKFVGGSGQVSE---RIMD 218

Query: 242 ASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDER 301
             G ++   + V  I   + +       N    +AKYV+S        + +     L   
Sbjct: 219 LLGDRVKLERPVIYID-QTRENVLVETLNHEMYEAKYVISAIPPTL-GMKIHFNPPLPMM 276

Query: 302 TTQAVQSIDYASPVTKINVALKSIPN--FLADPNPSENTVQPHHHGSIHLNCEDMQQVFD 359
             Q +  +     +T+    L+   +  + A    +      H  G +    E  ++   
Sbjct: 277 RNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETA-----THWSGYMEGAVEAGERAAR 331

Query: 360 AYQDATQGIPSTRPMIEMVLPSSLDNTLSPPGHH 393
               A   IP     I    P S+D    P    
Sbjct: 332 EILHAMGKIPEDE--IWQSEPESVDVPAQPITTT 363

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 86.4 bits (212), Expect = 6e-19
 Identities = 46/341 (13%), Positives = 105/341 (30%), Gaps = 20/341 (5%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG +GL +A  L   GL+V V E     GG   +     G  +   +  ++     +   
Sbjct: 9   AGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFL 67

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
           ++      K      ++   ++ +       S  + L         ++      +     
Sbjct: 68  IDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKL-QMLLEPILWK 126

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
           +  + ++++  + +       FG  ++  L              + S      + +  E 
Sbjct: 127 NKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEK 186

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQ 241
              ++    ++GA+ S  SP              +  +       GGM  ++ A+ +  +
Sbjct: 187 RFGSV----ILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR 242

Query: 242 ASGAQLFTSQTVTEITLDSDK----------RASGVVTNGLEIKAKYVLSNTTAKCTL-L 290
               +L  +  V E++    +           AS       E     V+          +
Sbjct: 243 --EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSM 300

Query: 291 DLIPKGN-LDERTTQAVQSIDYASPVTKINVALKSIPNFLA 330
            +  +GN         V   +Y S +  I+   K++P    
Sbjct: 301 KIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFY 341

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 68.6 bits (166), Expect = 3e-13
 Identities = 50/325 (15%), Positives = 99/325 (30%), Gaps = 37/325 (11%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  GL +A  LA AG  V VLE     GG   T        ++    +    +  I ++
Sbjct: 38  AGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVRE 97

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
             ++K  L+L       ++  + + W           + +K+   +              
Sbjct: 98  Y-IRKFDLRL-----NEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAG 151

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
             + E +  +++ L         N                    T S    L    +  P
Sbjct: 152 QLYEESLGKVVEELKRTNCSYILNKYD-----------------TYSTKEYLIKEGDLSP 194

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQ 241
                    +IG +++  S      +           +  +     GM  +  A+ R   
Sbjct: 195 GAVD-----MIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYR--- 246

Query: 242 ASGAQLFTSQTVTEITLDSDK---RASGVVTNGLEIKAKYVLSNTTAKCT-LLDLIPKGN 297
               ++  +  V +I  +  K       +      + A YV+  TT++   L+   P   
Sbjct: 247 DIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPP-- 304

Query: 298 LDERTTQAVQSIDYASPVTKINVAL 322
           L  +   A++S+         +  L
Sbjct: 305 LLPKKAHALRSVFTPYQFQHFSDPL 329

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 32/266 (12%), Positives = 73/266 (27%), Gaps = 35/266 (13%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSR-ASYLLSLLRPHIYK 60
           +G +GL +A  L   G+ V +LE R  +GG   T      +     A  +  L    +  
Sbjct: 13  SGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAV 71

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
               K+  ++L     +     +  +                          KD    ++
Sbjct: 72  --VSKQVNMELAKIKQKCPLYEANGQA---------------------VPKEKDEMVEQE 108

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
           ++  +E  + L   L     ++             G+  +V   L              +
Sbjct: 109 FNRLLEATSYLSHQLDFNVLNN--------KPVSLGQALEVVIQLQEKHVKDEQIEHWKK 160

Query: 181 PLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKG--AWAYPEGGMGAVSQALAR 238
            +K       L+  MV+           +      +  +   A    +     ++     
Sbjct: 161 IVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKE 220

Query: 239 SAQASGAQLFTSQTVTEITLDSDKRA 264
             + +  Q    + + E+  +     
Sbjct: 221 YDELAETQGKLEEKLQELEANPPSDV 246

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 57.3 bits (136), Expect = 1e-09
 Identities = 38/314 (12%), Positives = 82/314 (26%), Gaps = 30/314 (9%)

Query: 2   AGHNGLVSAAYLARAGLS-VAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYK 60
           AG +G+ +A  L+ AG++ + +LE    +GG         G      +  +  +      
Sbjct: 8   AGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVNGGKMN 66

Query: 61  DLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEK 120
            +    +    L      +  L+ + +                 E    +     Q   +
Sbjct: 67  PIWPIVNSTLKLRNFRSDFDYLAQNVY----------------KEDGGVYDEDYVQKRIE 110

Query: 121 YDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESE 180
               +EE+   L      +  D  ++L                +     +   +  F   
Sbjct: 111 LADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEP 170

Query: 181 PLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSA 240
           P   +L     +                         + G +   +   G +     +  
Sbjct: 171 PRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLN 230

Query: 241 QASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP-KGNLD 299
           +      ++   VT  T            +     A YV+ + +      DLI  K  L 
Sbjct: 231 KVVREIKYSPGGVTVKT-----------EDNSVYSADYVMVSASLGVLQSDLIQFKPKLP 279

Query: 300 ERTTQAVQSIDYAS 313
               +A+       
Sbjct: 280 TWKVRAIYQFWPVG 293

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
           G  G V+A   A+ G     +E+R  LGG  +    IP      +S++    +  
Sbjct: 11 GGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHS 66

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT 35
           G  G V+A   A+ G + A +E+R  LGG  + 
Sbjct: 13 GGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN 46

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
           G  G  +A   A  GL VA++ER   LGG  +    IP       + ++  +R  
Sbjct: 14 GGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHL 69

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 11/151 (7%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           +G  G V A  L +    V V+E+R+ +GG A TE+   G Q  +  Y   +   +    
Sbjct: 9   SGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHK--YGAHIFHTNDKYI 65

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
            +     ++                +       T          Q A+  +   +     
Sbjct: 66  WDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGD 125

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLF 152
                      + L + A    G  L   L 
Sbjct: 126 KVP--------ENLEEQAISLVGEDLYQALI 148

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
           G +GL++A   A  G +V +L++ + LG 
Sbjct: 10 GGPSGLMAAIGAAEEGANVLLLDKGNKLGR 39

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIP 40
           G  G+ +A   AR    VA++E+   LGG  V    +P
Sbjct: 9  GGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVP 46

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
           G  G   A YLA+   + A+ E   + G  
Sbjct: 12 GGIIGSAIAYYLAKENKNTALFESGTMGGRT 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 10/132 (7%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG +G V    LA  G  V ++++R  +GG +               Y   +        
Sbjct: 10  AGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD-ARDSETNVMVHVYGPHIFHTDNETV 68

Query: 62  LELKKHGLKLLTRDPRSYT---------PLSPDKWTNKAKSLTLGLDPQKNYEQIARFSV 112
                   +++    R            P++               + +    +    ++
Sbjct: 69  WNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDSTI 128

Query: 113 KDAQNFEKYDHH 124
            D Q FE+    
Sbjct: 129 ADPQTFEEEALR 140

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 33/230 (14%), Positives = 55/230 (23%), Gaps = 12/230 (5%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           +G  G  +A     +G  V ++E+  V+GG A          ++       +        
Sbjct: 24  SGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMF 83

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
            +  K G  +   DP     LS     +      +G D             +  +     
Sbjct: 84  EDTMKGGQNI--NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGA 141

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
                 +  L D           N     +            +                 
Sbjct: 142 GVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV------K 195

Query: 182 LKATLLTDGLIGA---MVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGG 228
             A +L  G        V+   PS     +     GA G     A   GG
Sbjct: 196 ADAVILATGGFAKNNERVAKLDPSLKG-FISTNQPGAVGDGLDVAENAGG 244

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAA 33
          AG  G+ +   LA+ G+   +++         
Sbjct: 11 AGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 10/139 (7%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT----------EEIIPGFQFSRASYLL 51
           AG  GL  AA LA+ G SV V +    +G   +            E+ P    S+  + +
Sbjct: 12  AGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFV 71

Query: 52  SLLRPHIYKDLELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFS 111
                       +     + +T   +    L  D+   +   +      +   + + R  
Sbjct: 72  KSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSE 131

Query: 112 VKDAQNFEKYDHHIEEITN 130
           V   +  +  +     +  
Sbjct: 132 VSQVERIQNDEKVRFVLQV 150

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 19/143 (13%), Positives = 27/143 (18%), Gaps = 4/143 (2%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
            G+   VSA  L  AG+   +LE   +         I  G             R      
Sbjct: 10  TGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLG 69

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
             L    +                   +      +G     N            +     
Sbjct: 70  SFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPR 129

Query: 122 DHHIEEITNLLDPLFDIAPHDFG 144
               E      D  F  A     
Sbjct: 130 VDSSEM----YDRYFPRANSMLR 148

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGG 31
          AG +GL +   L   G SV V+E    +GG
Sbjct: 15 AGFSGLYALYRLRELGRSVHVIETAGDVGG 44

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 2/149 (1%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           AG  G V+A   A+ GL  A++E+     G               +  LL          
Sbjct: 11  AGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAH 70

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
              K HG+   T +     P    +     ++LT G+        +  F         K 
Sbjct: 71  ESFKLHGIS--TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKK 128

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYN 150
                   +      +      G+  +  
Sbjct: 129 VEVTAADGSSQVLDTENVILASGSKPVEI 157

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 2  AGHNGLVSAAYLAR-AGLSVAVLERRHVLGG 31
          AG  GL +A  +++   + VA++E+    GG
Sbjct: 41 AGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
          AG  G  ++    +AG +V ++++    GG ++
Sbjct: 27 AGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 59

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 35/290 (12%), Positives = 68/290 (23%), Gaps = 35/290 (12%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPHIYKD 61
           +G+ G V+A  L +AG+   ++E      G +       G  F               K 
Sbjct: 15  SGYGGAVAALRLTQAGIPTQIVEM-----GRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 69

Query: 62  LELKKHGLKLLTRDPRSYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKY 121
            +   + +               D        +  G             +V   +N+ + 
Sbjct: 70  DQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEE 129

Query: 122 DHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGEMKDVYSLLTCSAFSILNDWFESEP 181
                +   + +  F  A    G   +   +    E                        
Sbjct: 130 ILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKF------------ARTGRKTA 177

Query: 182 LKATLLTDGLIGAMVSPHSPSTSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQA---LAR 238
            ++             P+     Y+         +   G         G  S     LA+
Sbjct: 178 QRSGF------TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQ 231

Query: 239 SAQASGAQLFTSQTVTEITLDSDKR---------ASGVVTNGLEIKAKYV 279
           +A      + T   VT++   +              G V     + A  V
Sbjct: 232 AAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRV 281

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
          +G  GL +A     AG  V +LE+  + GG   
Sbjct: 31 SGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 179 SEPLKATLLTDGLIG------AMVSPHSPSTSYVL---LHHVMGGAEGVKGAWAYPEGGM 229
           SE LK   LT  L        AM S  +  T   L      +          + +P  G 
Sbjct: 316 SEYLKTQKLTPNLQYFVLHSIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQ 375

Query: 230 GAVSQALARSAQASGAQLFTSQTVTEITLDSD-KRASGVVT-NGLEIKAKYVLSNTT 284
           G + Q   R     G       +V  + +D + ++   V+   G  I +K+ +   +
Sbjct: 376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS 432

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGA 32
          +G  GL SA  LAR G SV +L R      +
Sbjct: 14 SGVIGLSSALILARKGYSVHILARDLPEDVS 44

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
           G  G+ S    A  G   A++E + + GG  V    +P      A+ +   +  +
Sbjct: 10 GGSGGIASINRAAMYGQKCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMY 64

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 2   AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH 57
            G  G   +AYL   G    +++R   LGG+      +P   FS  +  L L R  
Sbjct: 50  GGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTF 105

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 2   AGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAV-TEEIIPGF 42
           AG +GL +A  +A+    L V ++E     GG +    ++    
Sbjct: 58  AGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAM 101

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASY 49
          AG  G V+A   A+ G  V ++E+ + LGG  +    IP      AS+
Sbjct: 11 AGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNVGCIPSKALISASH 57

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 2  AGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV 34
           G  GL SA   A  G   AV+E    LGG  V
Sbjct: 11 GGSGGLASARRAAELGARAAVVESHK-LGGTCV 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.84
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.77
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.77
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.73
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.54
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.43
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.31
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.29
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.23
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.2
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.18
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.12
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.08
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.97
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.92
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.88
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.85
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.45
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.39
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.19
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.1
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.93
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.83
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.78
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.74
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.72
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.71
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.63
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.61
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.58
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.5
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.49
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.4
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.39
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.34
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.31
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.23
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.23
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.22
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.2
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.19
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.16
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.13
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.12
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.11
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.09
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.07
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.01
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.98
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	96.97
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.93
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.92
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.84
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.81
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	96.77
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.65
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.6
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.57
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.56
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.51
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.49
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.49
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.41
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.18
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.1
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	96.1
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.05
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.01
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.96
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.9
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.86
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.86
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.79
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.77
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.76
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.75
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.69
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.63
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.6
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.39
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.37
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.11
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.06
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	95.02
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.95
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	94.87
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.45
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.11
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.75
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.66
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.62
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.96
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.59
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.56
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.15
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.96
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.88
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.09
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.95
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.24
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.06
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.96
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.85
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.45
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.44
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	88.11
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	87.01
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	86.75
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.72
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.47
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.24
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.06
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	83.9
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	83.72
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	83.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.19
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	81.27
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	80.88
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.73
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	80.33

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3e-20  Score=173.88  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             hcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHH---HHhhcccCCCCceeecCCCHHHHHHHHHHHHHHC
Q psy893          167 CSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLH---HVMGGAEGVKGAWAYPEGGMGAVSQALARSAQAS  243 (523)
Q Consensus       167 ~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~  243 (523)
                      .++.+++.++..++.++..+...............++...+..   +.........+.+.+|+||+++|+++|++.++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~  249 (297)
T d2bcgg1         170 NTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIY  249 (297)
T ss_dssp             SBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhcccccccCcceeccCcHHHHHHHHHHHHHhc
Confidence            4666777777777777766654322111111111222222111   1111111123344589999999999999999999


Q ss_pred             CcEEEeCceeeEEEECCC-CCeEEEEeCCeEEEcCEEEEc
Q psy893          244 GAQLFTSQTVTEITLDSD-KRASGVVTNGLEIKAKYVLSN  282 (523)
Q Consensus       244 G~~i~~~~~V~~I~~~~~-~~~~~v~~~g~~~~ad~vI~a  282 (523)
                      |++|++|++|++|..+++ +++++|+.+|++++||+||++
T Consensus       250 G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         250 GGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             TCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             CCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            999999999999987542 556666688999999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-20  Score=180.72  Aligned_cols=268  Identities=16%  Similarity=0.094  Sum_probs=151.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhhh---hhccccccccCceEeecCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRPH---IYKDLELKKHGLKLLTRDPR   77 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~~---~~~~lgl~~~g~~~~~~~~~   77 (523)
                      |||++||+||++|+++|++|+||||++++||++.|.+..+|+.+|.|++++....+.   +++++|++     .......
T Consensus         6 GaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~-----~~~~~~~   80 (383)
T d2v5za1           6 GGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLE-----TYKVNEV   80 (383)
T ss_dssp             CCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCC-----EEECCCS
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCc-----ceeccCc
Confidence            899999999999999999999999999999999998767899999999886555553   45555543     2222211


Q ss_pred             CcccCCCCcccCCCCceeecCCHHHHHHHHHccChhhHHHHHHHHHHHHHHHhHHHhhhhcCCCChhhHHHHHHHhcccc
Q psy893           78 SYTPLSPDKWTNKAKSLTLGLDPQKNYEQIARFSVKDAQNFEKYDHHIEEITNLLDPLFDIAPHDFGNLLMYNLFTRRGE  157 (523)
Q Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (523)
                      .......+     ............      ............+...+......+.....     ..          .  
T Consensus        81 ~~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------~--  132 (383)
T d2v5za1          81 ERLIHHVK-----GKSYPFRGPFPP------VWNPITYLDHNNFWRTMDDMGREIPSDAP-----WK----------A--  132 (383)
T ss_dssp             SEEEEEET-----TEEEEECSSSCC------CCSHHHHHHHHHHHHHHHHHHTTSCTTCG-----GG----------S--
T ss_pred             cceEEecC-----cccccccccccc------hhhhhhhhhHHHHHHHHHHhhhhcccccc-----cc----------h--
Confidence            11100000     111111111000      00000011111112222111111100000     00          0  


Q ss_pred             HHHHHHHHhhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCcchHHHHHHHHhh------cccCCCCceeecCCCHHH
Q psy893          158 MKDVYSLLTCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSPSTSYVLLHHVMG------GAEGVKGAWAYPEGGMGA  231 (523)
Q Consensus       158 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~gG~~~  231 (523)
                       .........++.+++.+....+....+............+........+......      ......+.+..+.++++.
T Consensus       133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (383)
T d2v5za1         133 -PLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQ  211 (383)
T ss_dssp             -TTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHH
T ss_pred             -hhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhH
Confidence             0111223457777777777766666555433221111233333332222111000      011222333478899999


Q ss_pred             HHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHHhhCCCCCCCHHHHHHHhc
Q psy893          232 VSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLLDLIPKGNLDERTTQAVQS  308 (523)
Q Consensus       232 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~~ll~~~~~~~~~~~~~~~  308 (523)
                      +++.+++   +.|++|++|++|++|..++ +++. |+ .+|++++||+||+|+++..+ .++...+.++....+.+.+
T Consensus       212 ~~~~l~~---~~g~~i~~~~~v~~I~~~~-~~v~-v~~~~g~~~~ad~vI~a~p~~~~-~~~~~~p~l~~~~~~~~~~  283 (383)
T d2v5za1         212 VSERIMD---LLGDRVKLERPVIYIDQTR-ENVL-VETLNHEMYEAKYVISAIPPTLG-MKIHFNPPLPMMRNQMITR  283 (383)
T ss_dssp             HHHHHHH---HHGGGEEESCCEEEEECSS-SSEE-EEETTSCEEEESEEEECSCGGGG-GGSEEESCCCHHHHHHTTS
T ss_pred             HHHHHHH---HcCCeEEecCcceEEEecC-CeEE-EEECCCCEEECCEEEECCCHHHH-hhCccCCCCCHHHHHHHHH
Confidence            9998876   5689999999999999887 6664 77 88999999999999999885 5665455677776665554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.77  E-value=2.1e-18  Score=165.63  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=62.0

Q ss_pred             ceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEcCChHHHHHhhCCCCC
Q psy893          221 AWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSNTTAKCTLLDLIPKGN  297 (523)
Q Consensus       221 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a~~~~~~~~~ll~~~~  297 (523)
                      .+..++||++.+++.|++.+   |++|++|++|++|..++ +++..+. .+|  ++++||+||+|+|++.+ .+|+++  
T Consensus       213 ~~~~~~~g~~~~~~~l~~~~---g~~i~~~~~V~~I~~~~-~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~-~~Ll~~--  285 (347)
T d2ivda1         213 ALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARED-GGWRLIIEEHGRRAELSVAQVVLAAPAHAT-AKLLRP--  285 (347)
T ss_dssp             CEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSCHHHH-HHHHTT--
T ss_pred             cccccCCchHHHHHHHHHHh---hcccccCCEEEEEEEeC-CeEEEEEEcCCeEEEEECCEEEECCCHHHH-HHhccC--
Confidence            33478999999999998854   78999999999999887 6655344 555  46899999999999986 678764  


Q ss_pred             CCHHHHHHHhcC
Q psy893          298 LDERTTQAVQSI  309 (523)
Q Consensus       298 ~~~~~~~~~~~~  309 (523)
                      +++...+.+.++
T Consensus       286 ~~~~~~~~~~~~  297 (347)
T d2ivda1         286 LDDALAALVAGI  297 (347)
T ss_dssp             TCHHHHHHHHTC
T ss_pred             CCHHHHHHhhcc
Confidence            556666666544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.73  E-value=2.1e-17  Score=160.79  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCeEEEcCEEEEcCChHHHHHhhCCC
Q psy893          220 GAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGLEIKAKYVLSNTTAKCTLLDLIPK  295 (523)
Q Consensus       220 g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~~~~ad~vI~a~~~~~~~~~ll~~  295 (523)
                      +.+..+.+|+..++++|++   +.|++|++|++|++|..++ ++++.+.    .++++++||+||+|+|+..+ .++...
T Consensus       228 ~~~~~~~~~~~~l~~~l~~---~~g~~i~~~~~V~~I~~~~-~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l-~~i~~~  302 (370)
T d2iida1         228 KRFDEIVDGMDKLPTAMYR---DIQDKVHFNAQVIKIQQND-QKVTVVYETLSKETPSVTADYVIVCTTSRAV-RLIKFN  302 (370)
T ss_dssp             CCEEEETTCTTHHHHHHHH---HTGGGEESSCEEEEEEECS-SCEEEEEECSSSCCCEEEESEEEECSCHHHH-TTSEEE
T ss_pred             cccccchhhHHHHHHHHHH---hcCCccccCceEEEEEEeC-CeEEEEEEecCCCeEEEEeeEEEecCCHHHH-hhCccC
Confidence            3345789999999998876   6789999999999999988 6665332    23458999999999999874 554334


Q ss_pred             CCCCHHHHHHHhcC
Q psy893          296 GNLDERTTQAVQSI  309 (523)
Q Consensus       296 ~~~~~~~~~~~~~~  309 (523)
                      +.+++...+.++.+
T Consensus       303 p~l~~~~~~ai~~~  316 (370)
T d2iida1         303 PPLLPKKAHALRSV  316 (370)
T ss_dssp             SCCCHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhc
Confidence            45787777666654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=1.5e-15  Score=145.82  Aligned_cols=64  Identities=25%  Similarity=0.342  Sum_probs=54.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh---hhhcccccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP---HIYKDLELK   65 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~---~~~~~lgl~   65 (523)
                      |||++||+||++|+++|++|+||||++++||+++|+. .+|+.+|.|++++....+   .+++++++.
T Consensus         8 GaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~   74 (373)
T d1seza1           8 GAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLGLR   74 (373)
T ss_dssp             CCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred             CcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCHHHHHHHHHhCCc
Confidence            8999999999999999999999999999999999988 789999999988654444   345555543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.43  E-value=4e-14  Score=132.94  Aligned_cols=52  Identities=23%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCcceeeecccCCceeccchhhhhh
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSL   53 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~   53 (523)
                      |||++||+||++|+++|+ +|+||||++++||+++|+. .+|+.+|.|++++..
T Consensus         7 GaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~   59 (347)
T d1b5qa1           7 GAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEG   59 (347)
T ss_dssp             CCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEE
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEec
Confidence            899999999999999996 7999999999999999987 789999999887543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.31  E-value=1.5e-11  Score=115.11  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHHHHHhhCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ...+..+|.+.++++|++++++++|++|..++ +++ .|+++..++.||+||+|++++.  .+|++
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~V~t~~g~i~a~~VViAaG~~s--~~l~~  210 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANGSYTADKLIVSMGAWN--SKLLS  210 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTEEEEEEEEEECCGGGH--HHHGG
T ss_pred             ccccccccccccccccccccCCcEEEEEEEEC-CEE-EEEECCcEEEcCEEEECCCCcc--hhhHH
Confidence            36889999999999999999999999999987 665 5774444799999999999987  45653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.29  E-value=1.2e-12  Score=124.44  Aligned_cols=62  Identities=18%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeec--ccCCceeccchhhhhhhhhhhhccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEE--IIPGFQFSRASYLLSLLRPHIYKDL   62 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~--~~~G~~~d~g~~~~~~~~~~~~~~l   62 (523)
                      |||++||+||++|+++|++|+|+||++++||.+.++.  ..+++.++.|+|++....+.+++.+
T Consensus         9 GaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~   72 (314)
T d2bi7a1           9 GAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYV   72 (314)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHH
Confidence            9999999999999999999999999999999998874  2467889999998766566565544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-12  Score=126.20  Aligned_cols=64  Identities=23%  Similarity=0.356  Sum_probs=55.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCceeccchhhhhhhhh----hhhcccccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQFSRASYLLSLLRP----HIYKDLELK   65 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~d~g~~~~~~~~~----~~~~~lgl~   65 (523)
                      |||++||+||++|+++|++|+|||+++++||+++|++ .+|+.+|.|++++.....    .+++++|++
T Consensus        12 GaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2          12 GSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQVNME   79 (449)
T ss_dssp             CCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECCCCCcHHHHHHHHcCCc
Confidence            8999999999999999999999999999999999988 789999999988643322    456666643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.20  E-value=1.9e-10  Score=108.68  Aligned_cols=58  Identities=28%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++.+|.+.+++.|++|+.+++|++|..++ +++++|+++..+++||+||+|++++.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~-~~v~~V~T~~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTADGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeC-CEEEEEeccceeEECCEEEEecchhH
Confidence            46889999999999999999999999999998 88888885555899999999999986

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.18  E-value=4.3e-11  Score=111.49  Aligned_cols=57  Identities=21%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~~  287 (523)
                      ...++..|.+.++++|++|+.+++|++|..++  ++++|+++..++.||+||+|++++.
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPSGDVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETTEEEEEEEEEECCGGGT
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEeec--ceEEEecCCeEEEcCEEEECCCccH
Confidence            46789999999999999999999999999764  4567884445899999999999985

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.12  E-value=3.5e-10  Score=103.50  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHH
Q psy893          227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~  287 (523)
                      .....+.+.|.+.+++.|++|+++++|++|..++ +++.+|. .+|++++||.||+|++...
T Consensus       107 ~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         107 NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             ccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            3456789999999999999999999999999988 8888888 8888999999999998765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=6.8e-11  Score=111.28  Aligned_cols=61  Identities=28%  Similarity=0.385  Sum_probs=52.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceeeecccCCcee-ccchhhhhhhhhhhhccc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVTEEIIPGFQF-SRASYLLSLLRPHIYKDL   62 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~G~~~-d~g~~~~~~~~~~~~~~l   62 (523)
                      |||++||+||.+|+++|++|+|+|+++++||.|.+.. .+|+.+ +.|+|++....+.+++-+
T Consensus         8 GaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~~v~~~~   69 (298)
T d1i8ta1           8 GSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYV   69 (298)
T ss_dssp             CCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecchHHHHHh
Confidence            9999999999999999999999999999999999986 678865 889998765555555443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.01  E-value=1.6e-09  Score=99.27  Aligned_cols=63  Identities=14%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             ecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCC-eEEEE-eCCeEEEcCEEEEcCChH
Q psy893          224 YPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKR-ASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       224 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~-~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      ++......+.+.|.+.+++.|++|+++++|++|...+++. +..+. .++++++||+||+|++-.
T Consensus       103 ~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~  167 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGL  167 (253)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCS
T ss_pred             ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcc
Confidence            5566677899999999999999999999999999865333 33344 788899999999999843

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.97  E-value=2.7e-09  Score=100.71  Aligned_cols=59  Identities=20%  Similarity=0.114  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~~  287 (523)
                      ...+...+.+.+++.|++|+++++|++|..++++++++|. .  ++.  ++.|+.||+|++-..
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCccc
Confidence            4568889999999999999999999999887657899987 3  333  578999999998643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.92  E-value=3.5e-09  Score=100.64  Aligned_cols=58  Identities=24%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-e--CCe--EEEcCEEEEcCChH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-T--NGL--EIKAKYVLSNTTAK  286 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~--~g~--~~~ad~vI~a~~~~  286 (523)
                      ...+.+.|.+.+.++|++|+++++|++|..+++++|++|. .  +++  .+.|+.||+|++-.
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~  213 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  213 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCc
Confidence            4578899999999999999999999999987658898887 2  333  57899999998854

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=4.9e-08  Score=95.32  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             hhcHHHHHHhhcCChHHHHHHhhhhhccCCCCCCCc--chHHHHHHHHhhcccCCCCceeecCCCHHHHHHHHHHHHHHC
Q psy893          166 TCSAFSILNDWFESEPLKATLLTDGLIGAMVSPHSP--STSYVLLHHVMGGAEGVKGAWAYPEGGMGAVSQALARSAQAS  243 (523)
Q Consensus       166 ~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~~~~~  243 (523)
                      ..++.+++.++...+.+..++.....+.  ..+...  .+...+..++.+...+....+-||..|.+.|++++.+.+.-.
T Consensus       312 ~~~~~e~l~~~~l~~~~~~~i~~aial~--~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gEipQ~FcR~~AV~  389 (491)
T d1vg0a1         312 GTTFSEYLKTQKLTPNLQYFVLHSIAMT--SETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVF  389 (491)
T ss_dssp             TSBHHHHHTTSSSCHHHHHHHHHHTTC----CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHcCCChHHHHHHHhheecc--CCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCcchHHHHHHHHHHhc
Confidence            4578888988888887777665322111  122111  122222223222222222334589999999999999999999


Q ss_pred             CcEEEeCceeeEEEEC-CCCCeEEEE-eCCeEEEcCEEEEcC
Q psy893          244 GAQLFTSQTVTEITLD-SDKRASGVV-TNGLEIKAKYVLSNT  283 (523)
Q Consensus       244 G~~i~~~~~V~~I~~~-~~~~~~~v~-~~g~~~~ad~vI~a~  283 (523)
                      |+.+.+|++|++|..+ +++++.+|. .+|+++.+++||+.-
T Consensus       390 Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         390 GGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             TCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             CcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            9999999999999985 226777888 789999999999863

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.85  E-value=2.7e-08  Score=94.02  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE---eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV---TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~---~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.|.+.+++.|++++++++|+++..++++++++|.   .+++  .+.|+.||+|++...
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccccc
Confidence            468899999999999999999999999886558899887   2444  478999999998654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.45  E-value=2.2e-06  Score=82.33  Aligned_cols=61  Identities=20%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE---eC--C-----eEEEcCEEEEcCChHHHHHhhC
Q psy893          231 AVSQALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV---TN--G-----LEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       231 ~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~---~~--g-----~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      +....+...+++.| ++|++++.|++|..++ ++.++|.   .+  +     ++++||.||++++...+. +||
T Consensus       223 s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~~-~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp-~LL  294 (370)
T d3coxa1         223 SLDKTYLAQAAATGKLTITTLHRVTKVAPAT-GSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTS-KLL  294 (370)
T ss_dssp             CGGGTHHHHHHHTTCEEEECSEEEEEEEECS-SSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHH-HHH
T ss_pred             ChHHHHHHHHHhCCCcEEEecCcEEEEEEcC-CCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhH-HHH
Confidence            33444444455665 8999999999999987 6655554   22  2     258899999999988764 443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.39  E-value=1.3e-06  Score=82.78  Aligned_cols=57  Identities=18%  Similarity=0.127  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+..+|.+.+++.|++|+.++.|.++..++ +++.++.    .+|+  ++.|+.||+|++...
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            4688899999999999999999999999988 8887765    3565  578999999987654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.34  E-value=4.5e-06  Score=79.96  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             HHHHHHHCC-cEEEeCceeeEEEECCCCC-eEEEE-e--CC-----eEEEcCEEEEcCChHHHHHhhC
Q psy893          236 LARSAQASG-AQLFTSQTVTEITLDSDKR-ASGVV-T--NG-----LEIKAKYVLSNTTAKCTLLDLI  293 (523)
Q Consensus       236 l~~~~~~~G-~~i~~~~~V~~I~~~~~~~-~~~v~-~--~g-----~~~~ad~vI~a~~~~~~~~~ll  293 (523)
                      ....+++.| .+|++++.|++|+.++++. +++|+ .  ++     ++++|+.||+++++..+. +||
T Consensus       224 yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp-~LL  290 (367)
T d1n4wa1         224 YLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGST-ELL  290 (367)
T ss_dssp             HHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHH-HHH
T ss_pred             hhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCH-HHH
Confidence            344455666 8999999999999987332 33444 2  22     257899999999988764 444

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.28  E-value=1.6e-06  Score=82.19  Aligned_cols=55  Identities=13%  Similarity=-0.086  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eC---Ce---EEEcCEEEEcCChHH
Q psy893          231 AVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TN---GL---EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~---g~---~~~ad~vI~a~~~~~  287 (523)
                      .+.+.|.+.++..+..|++|++|++|+.++ +++. |+ .+   ++   +..||.||+|++...
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~-~~w~-Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GSWV-VTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET-TEEE-EEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEecC-CEEE-EEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            455556666666678899999999999987 6643 44 22   22   457999999998664

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=3.8e-07  Score=77.39  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||..|+++|++|+|+|+.+.+||...
T Consensus        50 GaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          50 GAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            8999999999999999999999999999999765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.7e-05  Score=73.91  Aligned_cols=56  Identities=27%  Similarity=0.313  Sum_probs=42.0

Q ss_pred             HHHHHHH-HHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          231 AVSQALA-RSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       231 ~l~~~l~-~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+...+. +..+..+++|+.+++|.+|..++ ++++++.    .+|+  .+.|+.||+|++-..
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            4454444 44444579999999999999998 8998876    3565  458999999998643

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3.8e-05  Score=72.18  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE----eCCe--EEEcCEEEEcCChHH
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV----TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~----~~g~--~~~ad~vI~a~~~~~  287 (523)
                      -..+...|.+.+++.+++++.++.+..+..++++++.++.    .+|+  .+.|+.||++++-..
T Consensus       142 G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            3578899999999999999999999999886547666544    4554  468999999988654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=2.3e-06  Score=76.60  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCChhHHHHHHHHHHcC-------CcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAG-------LSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-------~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||++|+++|       ++|+|+||.+.+||..+
T Consensus         9 GaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           9 GSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            89999999999999998       57999999999999874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.83  E-value=3.7e-06  Score=77.26  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             CCChhHHHHHHHHHH-cCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR-AGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~-~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||++||+ .|++|+|+||++.+||.+.
T Consensus        40 GaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          40 GAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             CCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             CCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            899999999999997 5999999999999999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.78  E-value=6.5e-06  Score=74.53  Aligned_cols=32  Identities=41%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||+||+.|+++|++|+|+||+...+|.
T Consensus        13 GaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1          13 GSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            89999999999999999999999998755444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=8.6e-06  Score=70.28  Aligned_cols=35  Identities=29%  Similarity=0.638  Sum_probs=32.1

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|+ +|+|+||++.+||..+.
T Consensus        11 GaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4          11 GAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            899999999999999998 59999999999997643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=6.9e-06  Score=73.04  Aligned_cols=34  Identities=35%  Similarity=0.576  Sum_probs=32.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+|++.|++|+|+|+++.+||.|.
T Consensus        12 G~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1          12 GGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            8999999999999999999999999999999874

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=7e-06  Score=72.99  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||.+|+++  |++|+|||+.+.+||.+..
T Consensus         8 GaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           8 GSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            8999999999999886  7899999999999998753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.71  E-value=8e-06  Score=72.57  Aligned_cols=34  Identities=38%  Similarity=0.581  Sum_probs=32.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+|+++|++|+|+|+.+.+||.+.
T Consensus        13 G~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1          13 GGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            8999999999999999999999999999999764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.66  E-value=1.1e-05  Score=71.17  Aligned_cols=34  Identities=32%  Similarity=0.585  Sum_probs=32.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||.+|++.|.+|+|+|+++.+||.|.
T Consensus        10 GgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1          10 GGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            8999999999999999999999999999999774

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=1.5e-05  Score=71.02  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcceee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAVT   35 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   35 (523)
                      |||++||+||..|+++|++|+|+|+++.+||....
T Consensus        56 GaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          56 GAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            89999999999999999999999999999997643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.63  E-value=1.5e-05  Score=72.28  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=36.9

Q ss_pred             CCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHHHH
Q psy893          243 SGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCTLL  290 (523)
Q Consensus       243 ~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~~~  290 (523)
                      .+++++++++|++|..++ +.+ .|+ .||+++++|.+|.+.+.+....
T Consensus       109 ~~~~~~~~~~v~~~~~~~-~~v-~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1         109 GPERYHTSKCLVGLSQDS-ETV-QMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             CSTTEETTCCEEEEEECS-SCE-EEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ccceeecCcEEEEEEeeC-Cce-EEEECCCCEEEEEEEecccccccccc
Confidence            357899999999999887 554 466 8999999999999988765433

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.61  E-value=1.7e-05  Score=73.31  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=38.5

Q ss_pred             HHHHHHHHCCc--EEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          235 ALARSAQASGA--QLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       235 ~l~~~~~~~G~--~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      -|.+.+++.+.  .|++|++|+++..+++...+.|+ .+++++++|.||+|++.
T Consensus        90 Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          90 YINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecc
Confidence            34444445554  59999999999976545556788 78889999999999884

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.58  E-value=0.0001  Score=57.51  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|++|++|+.|++|..++ +.+..+. .+|+++.||.||+|++
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCEEEEEECCCCEEEcCEEEEecC
Confidence            5788999999999999999999999999876 4445677 8899999999999976

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.50  E-value=2.9e-05  Score=74.42  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CCChhHHHHHHHHHH------cCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLAR------AGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||+.|||      +|++|+||||+..+|....
T Consensus        39 GgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          39 GAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             CCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            899999999999998      8999999999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.49  E-value=0.00016  Score=56.22  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNT  283 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~  283 (523)
                      ..+.+.+.+.++++|+++++|++|++|+...++++ .|+ .+|++++||.||+|+
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            57889999999999999999999999997663544 477 889999999999985

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=2.6e-05  Score=72.60  Aligned_cols=34  Identities=32%  Similarity=0.506  Sum_probs=31.6

Q ss_pred             CCChhHHHHHHHHHHc--CCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARA--GLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   34 (523)
                      |||++||+||++|+++  |++|+|+|+++.+||.+.
T Consensus        57 g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          57 GAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            8999999999999975  999999999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.4e-05  Score=67.66  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=30.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||.+|++.|.+|+|+|++ .+||.|.
T Consensus         9 G~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           9 GGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            89999999999999999999999996 5898763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00022  Score=55.35  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|+++++++.|++|..++++.+ .|+ .+|+++.+|.||+|++
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            57888999999999999999999999998763443 477 8899999999999875

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0002  Score=57.49  Aligned_cols=53  Identities=9%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|+++++|+.|++|..++ +++ .|+ .+|+++.||.||+|++
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~-~~~-~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKL-LIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEecC-CEE-EEEECCCCEEECCEEEEeec
Confidence            4677888999999999999999999999876 654 477 8899999999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.31  E-value=5.9e-05  Score=66.41  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||+||.+|+++|++|+|+|+....++.
T Consensus        10 GgGpAGl~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1          10 GAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             CcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence            89999999999999999999999998776654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.23  E-value=9.6e-05  Score=67.25  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=35.5

Q ss_pred             HCCcEEEeCceeeEEEECCCCCeEEEE-eCC----eEEEcCEEEEcCChHHHHHh
Q psy893          242 ASGAQLFTSQTVTEITLDSDKRASGVV-TNG----LEIKAKYVLSNTTAKCTLLD  291 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g----~~~~ad~vI~a~~~~~~~~~  291 (523)
                      ..+.++.++++|+.+..++ ++++ |. .+|    +++.+|.||.|-+.+....+
T Consensus       118 ~~~~~~~~~~~v~~~~~~~-~~v~-v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~  170 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERD-GRVL-IGARDGHGKPQALGADVLVGADGIHSAVRA  170 (288)
T ss_dssp             HCTTSEEESEEEEEEEEET-TEEE-EEEEETTSCEEEEEESEEEECCCTTCHHHH
T ss_pred             ccCeeeecCcEEEEeeecC-CcEE-EEEEcCCCCeEEEeeceeeccCCccceeee
Confidence            3468899999999999887 6654 44 444    47899999999887654433

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.23  E-value=6.6e-05  Score=71.06  Aligned_cols=52  Identities=19%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             HHHHHCCcEEEeCceeeEEEECCC--CCeEEEE-e--CCe----EEEcCE-EEEcCChHHHH
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSD--KRASGVV-T--NGL----EIKAKY-VLSNTTAKCTL  289 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~--~~~~~v~-~--~g~----~~~ad~-vI~a~~~~~~~  289 (523)
                      ....+.+.+|.+++.|++|..++.  .++++|+ .  +|.    .+.|++ ||+++++..+-
T Consensus       202 ~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP  263 (351)
T d1ju2a1         202 NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTP  263 (351)
T ss_dssp             GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHH
T ss_pred             ccchhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCH
Confidence            334466899999999999998741  3688887 3  332    245654 99999988764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.22  E-value=0.0005  Score=54.66  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECC-CCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDS-DKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|+++++|+.|++|.... ++++..|. .+|+++.||.||++++
T Consensus        77 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          77 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            4567788888999999999999999998753 25666677 8999999999999875

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=8.6e-05  Score=65.10  Aligned_cols=33  Identities=36%  Similarity=0.607  Sum_probs=29.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||.++++.|.+|+|+|+.. +||.|.
T Consensus        10 G~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1          10 GAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            899999999999999999999999966 677653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.19  E-value=8.3e-05  Score=67.06  Aligned_cols=33  Identities=36%  Similarity=0.573  Sum_probs=30.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|++||.++++.|.+|+|+|+. .+||.|-
T Consensus         8 G~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           8 GGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999985 4798874

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.00011  Score=65.07  Aligned_cols=31  Identities=26%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||++||+||.++++.|++|+|+|+.+..|.
T Consensus        10 G~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1          10 GGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             CCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            8999999999999999999999999876543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.13  E-value=0.0001  Score=64.62  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||..+++.|.+|+|+|++. +||.|-
T Consensus        12 G~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~c~   44 (220)
T d1lvla1          12 GGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGTCL   44 (220)
T ss_dssp             CCSHHHHHHHHHHHHHTCCEEEECSSC-TTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCcEEEEecCC-CCCccc
Confidence            899999999999999999999999864 788763

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00011  Score=64.27  Aligned_cols=32  Identities=41%  Similarity=0.580  Sum_probs=28.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~   33 (523)
                      |||.+||+||.++++.|++|+|+|+.. +||.|
T Consensus        10 G~GpaG~~aA~~aar~G~kV~vIEk~~-~GG~c   41 (221)
T d3grsa1          10 GGGSGGLASARRAAELGARAAVVESHK-LGGTC   41 (221)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEeccC-CCCcc
Confidence            899999999999999999999999854 56655

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.11  E-value=0.00011  Score=67.27  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHHHHHhhCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKCTLLDLIP  294 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~~~~~ll~  294 (523)
                      ..+.+.|.+.+++.++.+..+..+..+...+++++ .|+  .+|+  +++||.||.|-+.+...++.++
T Consensus       103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~i~  170 (292)
T d1k0ia1         103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHGISRQSIP  170 (292)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred             HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCCCCcccceee
Confidence            46788889999999988888888777766552444 455  6765  4789999999887765555543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00011  Score=62.78  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||+||.+|++.|.+|+|+|+....|.+
T Consensus        12 GGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~   43 (190)
T d1trba1          12 GSGPAGYTAAVYAARANLQPVLITGMEKGGQL   43 (190)
T ss_dssp             CCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG
T ss_pred             CCCHHHHHHHHHHHHcCCceEEEEeecccccc
Confidence            89999999999999999999999987754433

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00016  Score=61.26  Aligned_cols=32  Identities=31%  Similarity=0.633  Sum_probs=29.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+||+||.++++.|.+|+|+|++  +||.+.
T Consensus         8 GgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           8 GSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            89999999999999999999999974  677664

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.01  E-value=0.00019  Score=68.18  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             HCCcEEEeCceeeEEEECCC-CCeEEEE-e---CCe--EEEcCEEEEcCChHHHH
Q psy893          242 ASGAQLFTSQTVTEITLDSD-KRASGVV-T---NGL--EIKAKYVLSNTTAKCTL  289 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~~~-~~~~~v~-~---~g~--~~~ad~vI~a~~~~~~~  289 (523)
                      ..|.+|++++.|++|..+++ +++++|+ .   +|+  +++|+.||+++++..+.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp  284 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT  284 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCH
Confidence            34689999999999998642 5688887 3   354  57899999999998864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.98  E-value=0.0015  Score=50.56  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC---eEEEcCEEEEcCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG---LEIKAKYVLSNTT  284 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g---~~~~ad~vI~a~~  284 (523)
                      -..+.+.+.+.++++|++++++++|++|+.++ ++++ |+ .++   +++.||.||+|++
T Consensus        62 d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          62 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN-KQVT-VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS-SCEE-EEEESSSEEEEEEESEEEECSC
T ss_pred             cchhHHHHHHHHHhcCceeecCcEEEEEEEeC-CEEE-EEEEECCCCEEEECCEEEEeeC
Confidence            35788999999999999999999999999987 5543 44 322   4789999999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00017  Score=66.66  Aligned_cols=54  Identities=11%  Similarity=0.193  Sum_probs=40.0

Q ss_pred             HHHHHHHHHCCcEEEeCceeeEEEECCC------CCeEEEE-e---CCe--EEEcCEEEEcCChHH
Q psy893          234 QALARSAQASGAQLFTSQTVTEITLDSD------KRASGVV-T---NGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       234 ~~l~~~~~~~G~~i~~~~~V~~I~~~~~------~~~~~v~-~---~g~--~~~ad~vI~a~~~~~  287 (523)
                      ..+.+.++..+++++.++++.++..+++      ++++++. .   +++  .+.++.||++++...
T Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~  207 (305)
T d1chua2         142 TLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  207 (305)
T ss_dssp             CCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccc
Confidence            3345566677899999999999998752      2688876 2   344  468899999988654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.93  E-value=0.0014  Score=50.66  Aligned_cols=53  Identities=21%  Similarity=0.202  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEE-cCEEEEcC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIK-AKYVLSNT  283 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~-ad~vI~a~  283 (523)
                      ..+.+.+.+.++++|+++++++.|++|+..+++. ..|+ .+|+++. +|.||+|+
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCe-EEEEECCCCEEEeCCEEEEeC
Confidence            5788999999999999999999999999776354 4576 8888774 69999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.92  E-value=0.00025  Score=63.92  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   34 (523)
                      |||.+|+.||..|++.|.+|+|+|+.+.+||.|-
T Consensus        49 GgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          49 GGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            8999999999999999999999999999999873

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00014  Score=68.66  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             CCCCCCCCeEecCCCCCCC--CCCCCc--cHHHHHHHHHHHh
Q psy893          484 SPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLM  521 (523)
Q Consensus       484 ~~~t~i~~LylaG~~~~pg--~g~~~a--sG~~aA~~i~~~~  521 (523)
                      ..+++++||||||++|+++  +++.||  ||.+||++|++++
T Consensus       406 ~~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~~  447 (449)
T d2dw4a2         406 GAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  447 (449)
T ss_dssp             ----CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999765  346676  9999999999876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.90  E-value=0.0012  Score=51.27  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--e--CCeEEEcCEEEEcCC
Q psy893          227 GGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--T--NGLEIKAKYVLSNTT  284 (523)
Q Consensus       227 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~--~g~~~~ad~vI~a~~  284 (523)
                      +-...+.+.+.+.+++.|+++++++.|++|+.++++++..+.  .  ++++++||.||+|++
T Consensus        60 ~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          60 IKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            334577888999999999999999999999988756555443  2  345799999999875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.84  E-value=0.0013  Score=51.29  Aligned_cols=52  Identities=23%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNT  283 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~  283 (523)
                      ..+.+.+.+.++++|+++++++.|++|..+  +++..|..+|+++.||.||+|+
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEEEEEeCCCEEECCEEEEEC
Confidence            467888899999999999999999999864  5555555888899999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.0017  Score=50.56  Aligned_cols=53  Identities=21%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC-----eEEEcCEEEEc
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG-----LEIKAKYVLSN  282 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g-----~~~~ad~vI~a  282 (523)
                      ..+.+.+.+.++++|++|++|+.|++|..++++..+.++ .++     ++++||.||+|
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            578899999999999999999999999987645555555 332     37899999876

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.77  E-value=0.0004  Score=65.46  Aligned_cols=33  Identities=30%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             CCChhHHHHHHHHHH----cCCcEEEEccCCCCCcce
Q psy893            1 EAGHNGLVSAAYLAR----AGLSVAVLERRHVLGGAA   33 (523)
Q Consensus         1 GaG~~GL~aA~~La~----~G~~V~vlE~~~~~GG~~   33 (523)
                      |||++||+||+.|++    +|.+|+|+||....||.+
T Consensus        28 G~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          28 GGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             CCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            899999999999986    699999999988766543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.65  E-value=0.00048  Score=64.74  Aligned_cols=29  Identities=31%  Similarity=0.571  Sum_probs=26.4

Q ss_pred             CCChhHHHHHHHHH-----HcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLA-----RAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La-----~~G~~V~vlE~~~~~   29 (523)
                      |||++||++|..|+     ++|++|+||||++.+
T Consensus        14 GaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1          14 GAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            89999999999997     479999999998765

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.60  E-value=0.00054  Score=58.38  Aligned_cols=29  Identities=28%  Similarity=0.275  Sum_probs=26.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||.+||+||.+|+|+|.+|+|+|+....
T Consensus        12 GgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1          12 GSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            89999999999999999999999986543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.57  E-value=0.0037  Score=48.07  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC--eEEEcCEEEEc
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG--LEIKAKYVLSN  282 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g--~~~~ad~vI~a  282 (523)
                      ..+.+.+.+.++++|++|++++.|++|..++ +.+.... .+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~-~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEERE-DGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEEEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEcC-CEEEEEEEeCCCEEEEEeEEEEEC
Confidence            4688899999999999999999999999877 5443222 565  46899999874

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.56  E-value=7.7e-05  Score=66.34  Aligned_cols=29  Identities=28%  Similarity=0.124  Sum_probs=25.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||+.||++|+.|+++|++|+|+|+...+
T Consensus         7 GaGi~GlstA~~L~~~G~~v~v~e~~~i~   35 (246)
T d1kifa1           7 GAGVIGLSTALCIHERYHSVLQPLDVKVY   35 (246)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTSSSCEEEEE
T ss_pred             CchHHHHHHHHHHHHCCCCceEEeeeeec
Confidence            89999999999999999999888885443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00074  Score=58.62  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             cEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          245 AQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       245 ~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      .+|+ ...|++|..++ +++.+|+ .+|.++.|+.||+|++-.
T Consensus        83 L~i~-q~~V~dli~e~-~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          83 LHLF-QATATGLLLEG-NRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             EEEE-ECCEEEEEEET-TEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHH-hccceeeEecc-cceeeEEeccccEEEEeEEEEccCcc
Confidence            4454 45688888888 8899999 788899999999999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.49  E-value=0.0029  Score=49.24  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCC--eEEEcCEEEEcC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV--TNG--LEIKAKYVLSNT  283 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g--~~~~ad~vI~a~  283 (523)
                      ..+.+.+.+.+++.|++|++|+.|.+|+.++++..+.+.  .+|  +++++|.|++|+
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            578899999999999999999999999987733233344  233  358999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.49  E-value=0.0023  Score=49.68  Aligned_cols=49  Identities=24%  Similarity=0.259  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|+++++++.|+++..   +   .|+ .||+++.||.||+|++
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            47788888999999999999999998762   3   255 8899999999999875

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.41  E-value=0.0025  Score=48.22  Aligned_cols=66  Identities=12%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEeEe
Q psy893          373 PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEI  444 (523)
Q Consensus       373 ~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~  444 (523)
                      ..+.+++.|.+.|.++|+|+.++++++.. ..    ..+..+...+++.+.++++|++++ +++...+...+
T Consensus        34 ~~lg~~f~S~~fp~r~p~~~~llrv~~Gg-~~----~~~~~~~~d~~l~~~a~~dL~~~l-gi~~~P~~~~v   99 (108)
T d2ivda2          34 RMLGAIHASTTFPFRAEGGRVLYSCMVGG-AR----QPGLVEQDEDALAALAREELKALA-GVTARPSFTRV   99 (108)
T ss_dssp             SCCEEEEHHHHCGGGBSTTCEEEEEEEEC-TT----CGGGGGSCHHHHHHHHHHHHHHHH-CCCSCCSEEEE
T ss_pred             eEEEEEEEccccccccCCCCEEEEEEeCC-CC----CcccccCCHHHHHHHHHHHHHHHh-CCCCCCcEEEe
Confidence            56678888888999999999998888742 11    012223456899999999999988 67655555444

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.18  E-value=0.0027  Score=48.74  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEe--CCeEEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVT--NGLEIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~--~g~~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|++++++++|++|.  + +.......  +++++.||.||+|++
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~-~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE--N-GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE--T-TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc--C-CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            4688899999999999999999999996  2 33222222  335799999999875

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.0011  Score=58.37  Aligned_cols=33  Identities=33%  Similarity=0.422  Sum_probs=27.8

Q ss_pred             CCChhHHHHHHHHHHcC---CcEEEEccCCCCCccee
Q psy893            1 EAGHNGLVSAAYLARAG---LSVAVLERRHVLGGAAV   34 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G---~~V~vlE~~~~~GG~~~   34 (523)
                      |||++|++||.++++.|   .+|+|+|+. .+||.|-
T Consensus         8 G~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cl   43 (233)
T d1xdia1           8 GGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAV   43 (233)
T ss_dssp             CCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceee
Confidence            89999999999998865   579999984 5788653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.10  E-value=0.0012  Score=58.29  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=26.8

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG   31 (523)
                      |||++|++||.++++.|. +|+|+|+....++
T Consensus        10 G~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~   41 (240)
T d1feca1          10 GAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP   41 (240)
T ss_dssp             CCSHHHHHHHHHHHHHHCCCEEEEESCSSSBT
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Confidence            899999999999999985 6999999876443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.05  E-value=0.0023  Score=49.39  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus        29 GgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          29 GGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCCccceeeeeeecccccEEEEEEecceecc
Confidence            8999999999999999999999999998753

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.01  E-value=0.0018  Score=56.73  Aligned_cols=28  Identities=36%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             CCChhHHHHHHHHHHcCC-cEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGL-SVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~-~V~vlE~~~~   28 (523)
                      |||++||+||.++++.|. +|+|+|+...
T Consensus        10 G~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1          10 GAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            899999999999999885 6999998543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.96  E-value=0.0041  Score=48.42  Aligned_cols=55  Identities=5%  Similarity=0.003  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeE-EEE-eCC--eEEEcCEEEEcCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRAS-GVV-TNG--LEIKAKYVLSNTT  284 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~-~v~-~~g--~~~~ad~vI~a~~  284 (523)
                      -..+.+.+.+.++++|+++++++.|.+|+.++ +.+. .+. .+|  ++++||.|++|++
T Consensus        66 d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          66 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhhHHHHHHHHHHHcCcccccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            34788999999999999999999999999887 4433 222 333  3799999999976

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.90  E-value=0.0023  Score=60.30  Aligned_cols=74  Identities=19%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHC-CcEEEeCceeeEEEECCCCCeEEEE-eC-----Ce--EEEcC-EEEEcCChHHHHHhhCCCCCCCHH
Q psy893          232 VSQALARSAQAS-GAQLFTSQTVTEITLDSDKRASGVV-TN-----GL--EIKAK-YVLSNTTAKCTLLDLIPKGNLDER  301 (523)
Q Consensus       232 l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~~~~v~-~~-----g~--~~~ad-~vI~a~~~~~~~~~ll~~~~~~~~  301 (523)
                      ...++...+.++ +.+|++++.|++|..++ +++++|+ .+     +.  ++.|+ .||+++++..+-.-|+-.-.-+.+
T Consensus       192 ~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~-~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~  270 (360)
T d1kdga1         192 PVATYLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTD  270 (360)
T ss_dssp             HHHTHHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHH
T ss_pred             ccchhhhhhhcccccccccCcEEEEEEEeC-CEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchh
Confidence            344444444454 47999999999999998 8999998 32     22  34554 499999988764333322223444


Q ss_pred             HHHHH
Q psy893          302 TTQAV  306 (523)
Q Consensus       302 ~~~~~  306 (523)
                      ..+.+
T Consensus       271 ~L~~~  275 (360)
T d1kdga1         271 MIQTV  275 (360)
T ss_dssp             HHHHH
T ss_pred             hhHHh
Confidence            44433

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.86  E-value=0.0027  Score=48.72  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||+.|+-+|..|++.|.+|+|+|+.+++.
T Consensus        28 GgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          28 GGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            899999999999999999999999999875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0033  Score=48.30  Aligned_cols=31  Identities=16%  Similarity=0.080  Sum_probs=29.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus        28 GgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~   58 (116)
T d1gesa2          28 GAGYIGVELGGVINGLGAKTHLFEMFDAPLP   58 (116)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CCChhhHHHHHHhhccccEEEEEeecchhhh
Confidence            8999999999999999999999999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.79  E-value=0.0072  Score=46.80  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCCh
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~  285 (523)
                      ..+.+.+.+.++++|+++++|+.|.++..+      ++..+++++++|.||+|++.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~------~v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANEE------GVLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECSS------EEEETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeCC------EEEeCCCEEECCEEEEEEEe
Confidence            467888899999999999999999998532      24577889999999999863

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.77  E-value=0.0036  Score=48.70  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||+.|+-+|..|++.|.+|+|+|+.+++-+
T Consensus        37 GgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          37 GSGYIGIEAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CChHHHHHHHHHhhccceEEEEEEecCcccc
Confidence            8999999999999999999999999987643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.76  E-value=0.004  Score=48.21  Aligned_cols=32  Identities=31%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||+.|+-+|..|++.|.+|+|+|+.+++-.+
T Consensus        37 GgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~   68 (121)
T d1d7ya2          37 GGGVIGLELAATARTAGVHVSLVETQPRLMSR   68 (121)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CcchhHHHHHHHhhcccceEEEEeeccccccc
Confidence            89999999999999999999999999987543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.75  E-value=0.0034  Score=48.73  Aligned_cols=31  Identities=35%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||..|+-+|..|++.|++|+|+|+++++-+
T Consensus        39 GgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          39 GGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             ECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            8999999999999999999999999988743

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.69  E-value=0.0044  Score=48.92  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||+.|+-+|..|++.|.+|+|+|+++++...
T Consensus        42 GgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          42 GGGYIGLEVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCchHHHHHHHHHHhhCcceeeeeeccccccc
Confidence            89999999999999999999999999987554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.015  Score=45.17  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-EEEE-eCCe------EEEcCEEEEcCC
Q psy893          230 GAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-SGVV-TNGL------EIKAKYVLSNTT  284 (523)
Q Consensus       230 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-~~v~-~~g~------~~~ad~vI~a~~  284 (523)
                      ..+.+.+.+.++++|+++++|++|++|..++++.. ..+. .+|+      ...+|.||+|++
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            56889999999999999999999999998763321 2222 3442      467999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.60  E-value=0.0041  Score=47.81  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=28.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus        29 GgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          29 GSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             CCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCchHHHHHHHHHHhccccceeeehhcccc
Confidence            899999999999999999999999998873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0054  Score=44.90  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |.|.+|+++|.+|++.|.+|+++|.+..+-
T Consensus        12 GlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1          12 GLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             eECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            889999999999999999999999876543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0062  Score=47.18  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=29.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   31 (523)
                      |||..|+-.|..|++.|.+|+|+|+++++-.
T Consensus        30 G~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          30 GGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            8999999999999999999999999998753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.11  E-value=0.0071  Score=46.89  Aligned_cols=30  Identities=30%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||+.||-.|..|++.|.+|+|+|+++++-
T Consensus        32 G~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          32 GAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            899999999999999999999999999874

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0086  Score=46.53  Aligned_cols=30  Identities=20%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus        29 GgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          29 GAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             cCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            899999999999999999999999998764

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=95.02  E-value=0.0064  Score=57.74  Aligned_cols=51  Identities=24%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             HHHHCCcEEEeCceeeEEEECCC---CCeEEEE---eCCe--EEEcCE-EEEcCChHHHH
Q psy893          239 SAQASGAQLFTSQTVTEITLDSD---KRASGVV---TNGL--EIKAKY-VLSNTTAKCTL  289 (523)
Q Consensus       239 ~~~~~G~~i~~~~~V~~I~~~~~---~~~~~v~---~~g~--~~~ad~-vI~a~~~~~~~  289 (523)
                      ...+.+.+|++++.|++|..+++   .++++|+   .+|.  ++.|++ ||+++++..+-
T Consensus       240 ~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP  299 (391)
T d1gpea1         240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISP  299 (391)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHH
T ss_pred             cccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcch
Confidence            33355799999999999976531   2688887   4564  467877 99999887653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.95  E-value=0.0096  Score=45.81  Aligned_cols=30  Identities=37%  Similarity=0.338  Sum_probs=28.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||..|+-.|..|++.|.+|+|+|+.+++-
T Consensus        29 G~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          29 GAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            899999999999999999999999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=94.87  E-value=0.0063  Score=57.66  Aligned_cols=51  Identities=29%  Similarity=0.335  Sum_probs=38.4

Q ss_pred             HHHHHCCcEEEeCceeeEEEECCCC---CeEEEE---eCCe--EEEcCE-EEEcCChHHH
Q psy893          238 RSAQASGAQLFTSQTVTEITLDSDK---RASGVV---TNGL--EIKAKY-VLSNTTAKCT  288 (523)
Q Consensus       238 ~~~~~~G~~i~~~~~V~~I~~~~~~---~~~~v~---~~g~--~~~ad~-vI~a~~~~~~  288 (523)
                      ..++..+.+|++++.|++|..++++   ++++|+   .+|+  ++.|++ ||+++++..+
T Consensus       233 p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~S  292 (385)
T d1cf3a1         233 PNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVS  292 (385)
T ss_dssp             GGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH
T ss_pred             chhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhC
Confidence            3344557999999999999987622   688887   4675  467776 9999987765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.45  E-value=0.014  Score=47.17  Aligned_cols=32  Identities=22%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||..|+.+|..|++.|.+|+|+|+.++++-.
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            78999999999999999999999999987644

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.11  E-value=0.054  Score=41.51  Aligned_cols=56  Identities=13%  Similarity=0.047  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCC--CeEEEE-e---CCe--EEEcCEEEEcCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDK--RASGVV-T---NGL--EIKAKYVLSNTT  284 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~--~~~~v~-~---~g~--~~~ad~vI~a~~  284 (523)
                      -..+.+.+.+.+++.|++|++|+.|++++..+++  ....+. .   +++  ...+|.|++|++
T Consensus        59 D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          59 DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            3578899999999999999999999999764312  122333 2   222  356899999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.77  E-value=0.029  Score=43.18  Aligned_cols=29  Identities=38%  Similarity=0.465  Sum_probs=26.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||..|+-.|..|++.|.+|+|++++..+
T Consensus        27 GgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          27 GASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            89999999999999999999999976543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.75  E-value=0.022  Score=44.08  Aligned_cols=32  Identities=22%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||..|+-.|..|++.|.+|+|+|+.+++-..
T Consensus        33 GgG~IG~E~A~~~~~~G~~Vtive~~~~il~~   64 (125)
T d1ojta2          33 GGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG   64 (125)
T ss_dssp             SCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CCCHHHHHHHHHhhcCCCEEEEEEeecccccc
Confidence            89999999999999999999999999877543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.66  E-value=0.021  Score=47.37  Aligned_cols=27  Identities=37%  Similarity=0.404  Sum_probs=25.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|..|++.|..|+++|++|.++++++
T Consensus         8 GaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           8 GLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            899999999999999999999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.64  E-value=0.017  Score=47.72  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=25.5

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~   28 (523)
                      |||.+|+.+|..|++.|.  +|+|+|+++.
T Consensus         9 GgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           9 GGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            899999999999999885  7999999775

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.62  E-value=0.019  Score=47.43  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=26.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||..|..+|.+|+++|++|+|++|+..
T Consensus         9 GaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           9 GSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            8999999999999999999999999765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.96  E-value=0.044  Score=41.90  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~G   30 (523)
                      |||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus        29 GgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          29 GGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            899999999999999999999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.28  E-value=0.13  Score=46.27  Aligned_cols=32  Identities=38%  Similarity=0.480  Sum_probs=31.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCCCcc
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVLGGA   32 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   32 (523)
                      |||++||++|.+|.++|.+|+||||++.+||.
T Consensus        14 GAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGt   45 (298)
T d1w4xa1          14 GAGFSGLYALYRLRELGRSVHVIETAGDVGGV   45 (298)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH
T ss_pred             CccHHHHHHHHHHHhCCCCEEEEEcCCCcccc
Confidence            89999999999999999999999999999995

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.59  E-value=0.025  Score=51.10  Aligned_cols=65  Identities=15%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CCceeecCCCHHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCe-----EEEE------eCCeEEEcCEEEEcCChHH
Q psy893          219 KGAWAYPEGGMGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRA-----SGVV------TNGLEIKAKYVLSNTTAKC  287 (523)
Q Consensus       219 ~g~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~-----~~v~------~~g~~~~ad~vI~a~~~~~  287 (523)
                      .+.+ .++||++.++++|++.+.  +++|+++++|++|..+. ++.     ..|.      .+++.+.+|+||+|++...
T Consensus       221 ~~~~-~~~~g~~~l~~~l~~~l~--~~~i~~~~~V~~i~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~  296 (373)
T d1seza1         221 RGSF-SFLGGMQTLTDAICKDLR--EDELRLNSRVLELSCSC-TEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD  296 (373)
T ss_dssp             CSCB-EETTCTHHHHHHHHTTSC--TTTEETTCCEEEEEEEC-SSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHH
T ss_pred             ceee-eecccchHHHHHHHHHhc--cceEecCCEEEEEEEeC-CcccccccceEEecccCCCCceEEECCEEEECCchHH
Confidence            3444 788999999999998764  67899999999999876 321     1222      1234678999999988655

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.56  E-value=0.021  Score=43.10  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCCCCCCCCCCceEEEEEecccccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEe
Q psy893          373 PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGY  442 (523)
Q Consensus       373 ~~~~v~~~s~~d~~~ap~G~~~i~~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~  442 (523)
                      ..+.+++.|.+.|.++|+|+.++++++.. ...    .++.+...+++.+.++++|++++ ++.+..+..
T Consensus        38 ~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg-~~~----~~~~~~~d~~l~~~a~~dl~~~l-gi~~~P~~~  101 (112)
T d1seza2          38 KTLGTLFSSMMFPDRAPNNVYLYTTFVGG-SRN----RELAKASRTELKEIVTSDLKQLL-GAEGEPTYV  101 (112)
T ss_dssp             CSSEEEEHHHHCGGGSCTTEEEEEEEEES-TTC----GGGTTCCHHHHHHHHHHHHHHHH-CBCSCCSSE
T ss_pred             eEEEEEEecccCCCcCCCCcEEEEEEECC-CCC----cccccCCHHHHHHHHHHHHHHHh-CCCCCccEE
Confidence            35577788888999999999988888642 111    12333456899999999999987 555544433

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.044  Score=46.74  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=34.7

Q ss_pred             HHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCCh
Q psy893          241 QASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTA  285 (523)
Q Consensus       241 ~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~  285 (523)
                      ++.|++++++++|++|..++ .   .|+ .+|+++.+|.||++++.
T Consensus        94 ~~~gI~~~~g~~V~~id~~~-~---~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          94 ENGGVAVLTGKKVVQLDVRD-N---MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TTCEEEEEETCCEEEEEGGG-T---EEEETTSCEEEEEEEEECCCE
T ss_pred             HHCCeEEEeCCEEEEeeccC-c---eeeeccceeeccceEEEeeee
Confidence            46789999999999998765 3   466 88999999999999884

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.96  E-value=0.061  Score=43.54  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=31.5

Q ss_pred             HCCcEEEeCceeeEEEECCCCCeEEEEeCCeEEEcCEEEEcCChH
Q psy893          242 ASGAQLFTSQTVTEITLDSDKRASGVVTNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       242 ~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~~~~ad~vI~a~~~~  286 (523)
                      +.|+++++++.|++|....  +  .+..+++++.+|.+|++++..
T Consensus        64 ~~~v~~~~~~~v~~i~~~~--~--~~~~~~~~i~~D~li~a~G~~  104 (167)
T d1xhca1          64 KRGIEIRLAEEAKLIDRGR--K--VVITEKGEVPYDTLVLATGAP  104 (167)
T ss_dssp             HHTEEEECSCCEEEEETTT--T--EEEESSCEEECSEEEECCCEE
T ss_pred             hccceeeeecccccccccc--c--cccccccccccceeEEEEEec
Confidence            5578999999999997543  2  233677789999999998854

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.88  E-value=0.075  Score=44.79  Aligned_cols=27  Identities=26%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |.|.-||+.|..||++|++|+.+|.+.
T Consensus         7 GlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           7 GLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            899999999999999999999999865

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.11  Score=41.91  Aligned_cols=28  Identities=21%  Similarity=0.140  Sum_probs=26.5

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|..|...|..|+++|++|+++.|.+.
T Consensus         7 GaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           7 GCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            8999999999999999999999999775

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.09  E-value=0.082  Score=43.45  Aligned_cols=29  Identities=17%  Similarity=0.077  Sum_probs=26.7

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~~   29 (523)
                      |||.+|+.+|..|++.|.+|+|++..+.+
T Consensus        10 GgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1          10 GTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            89999999999999999999999987754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.95  E-value=0.097  Score=43.75  Aligned_cols=47  Identities=15%  Similarity=0.224  Sum_probs=35.0

Q ss_pred             HHHHCCcEEEeCceeeEEEECCCCCeEEEE--eCCe--EEEcCEEEEcCChHH
Q psy893          239 SAQASGAQLFTSQTVTEITLDSDKRASGVV--TNGL--EIKAKYVLSNTTAKC  287 (523)
Q Consensus       239 ~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~--~~g~--~~~ad~vI~a~~~~~  287 (523)
                      .+++.|+++++++.|++|..++ +.++ ++  .+|+  ++.+|.+|++++...
T Consensus        65 ~l~~~gi~v~~~~~V~~i~~~~-~~v~-~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          65 KMESRGVNVFSNTEITAIQPKE-HQVT-VKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHTTCEEEETEEEEEEETTT-TEEE-EEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHCCcEEEEeeceeeEeecc-ccce-eeecccccccccccceeeEeeccee
Confidence            4446799999999999999876 5443 33  3443  578999999998653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.24  E-value=0.14  Score=38.69  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=25.9

Q ss_pred             CCChhHHHHHHHHHH---cCCcEEEEccCCCCC
Q psy893            1 EAGHNGLVSAAYLAR---AGLSVAVLERRHVLG   30 (523)
Q Consensus         1 GaG~~GL~aA~~La~---~G~~V~vlE~~~~~G   30 (523)
                      |||+.|+-.|..|++   .|.+|+|+|+.+++.
T Consensus        25 GgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          25 GGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            899999999987765   488999999988764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.06  E-value=0.15  Score=38.44  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             CCChhHHHHHHHHHHc---CCcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARA---GLSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~---G~~V~vlE~~~~~   29 (523)
                      |||..|+-+|..|++.   |.+|+|+|+.+++
T Consensus        27 GgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          27 GGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            8999999999877764   4579999998876

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.95  Score=34.29  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEE-eCC------eEEEcCEEEEcCC
Q psy893          229 MGAVSQALARSAQASGAQLFTSQTVTEITLDSDKRASGVV-TNG------LEIKAKYVLSNTT  284 (523)
Q Consensus       229 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g------~~~~ad~vI~a~~  284 (523)
                      ...+.+.+.+..+..++.+++++.|.+|.-++ .++.+|+ .+.      +++.+|.|+++++
T Consensus        65 ~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          65 EKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             CHHHHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hhHHHHHHHHhhcccceeEecceEEEEEECCC-CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            45667777777767789999999999999876 6788887 432      3688999988764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.14  Score=42.58  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||..|..-|..++++|++|+++|+++.
T Consensus        11 GaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2          11 GGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            8999999999999999999999998763

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.45  E-value=0.082  Score=43.57  Aligned_cols=39  Identities=13%  Similarity=0.139  Sum_probs=32.0

Q ss_pred             CcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChH
Q psy893          244 GAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAK  286 (523)
Q Consensus       244 G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~  286 (523)
                      +++++++++|++|..+. .   .+. .+|+++.+|.||++++..
T Consensus        69 ~i~~~~~~~v~~i~~~~-~---~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDPQA-H---TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TCEEEETCCEEEEETTT-T---EEEETTSCEEECSEEEECCCEE
T ss_pred             CeEEEEecccccccccc-c---eeEecCCcEeeeeeEEEEEEEE
Confidence            57799999999998765 3   355 889999999999998854

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.44  E-value=0.075  Score=46.59  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=37.8

Q ss_pred             HHCCcEEEeCceeeEEEECCCCCeEEEE-eCCeEEEcCEEEEcCChHHH
Q psy893          241 QASGAQLFTSQTVTEITLDSDKRASGVV-TNGLEIKAKYVLSNTTAKCT  288 (523)
Q Consensus       241 ~~~G~~i~~~~~V~~I~~~~~~~~~~v~-~~g~~~~ad~vI~a~~~~~~  288 (523)
                      +..++++++++.|..|...+ +.+. |+ .+|+.+.+|++|++++...+
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~~~~~~~~~~l  267 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSP-GGVT-VKTEDNSVYSADYVMVSASLGVL  267 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECS-SCEE-EEETTSCEEEESEEEECSCHHHH
T ss_pred             hhcccccccccccccccccC-ccEE-EEECCCCEEEcCEEEeecCHHHH
Confidence            34568899999999999987 6554 66 88999999999999987653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=88.11  E-value=0.46  Score=40.39  Aligned_cols=26  Identities=35%  Similarity=0.575  Sum_probs=25.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERR   26 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~   26 (523)
                      |||++|++||.++|+.|.+|+|+|++
T Consensus         9 GgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           9 GAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            89999999999999999999999987

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.32  E-value=0.48  Score=39.18  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             CCChhHHHHHHHHHHcC--CcEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAG--LSVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G--~~V~vlE~~~~~   29 (523)
                      |||.+|+.+|..|++.+  .+|+|+|+++.+
T Consensus         7 GgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           7 GSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            89999999999999874  579999987654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.01  E-value=0.18  Score=41.61  Aligned_cols=28  Identities=21%  Similarity=0.064  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|..|..-|..++++|++|+++|.++.
T Consensus        11 GaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3          11 GAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            8999999999999999999999998753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=86.75  E-value=0.42  Score=43.92  Aligned_cols=27  Identities=41%  Similarity=0.591  Sum_probs=25.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |||.+|+.+|.+|+++|++|+|||+..
T Consensus         9 GsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           9 GAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            899999999999999999999999853

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=0.26  Score=38.25  Aligned_cols=31  Identities=29%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             CCChhHHHHHHHHHH----cCCcEEEEccCCCCCc
Q psy893            1 EAGHNGLVSAAYLAR----AGLSVAVLERRHVLGG   31 (523)
Q Consensus         1 GaG~~GL~aA~~La~----~G~~V~vlE~~~~~GG   31 (523)
                      |||+.|+-.|..|++    .|.+|+++|+++++..
T Consensus        44 GgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~   78 (137)
T d1m6ia2          44 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMG   78 (137)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc
Confidence            899999999998864    4899999999988754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.47  E-value=0.18  Score=35.94  Aligned_cols=25  Identities=16%  Similarity=-0.004  Sum_probs=20.6

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+||+||  |..|.++|++|.--|+..
T Consensus        11 G~GMs~L--A~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1          11 GIGMSAV--ALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             SHHHHHH--HHHHHHTTCEEEEECSSC
T ss_pred             HHHHHHH--HHHHHhCCCeEEEEeCCC
Confidence            5667766  888999999999999764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.24  E-value=0.24  Score=41.86  Aligned_cols=29  Identities=14%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             CCChhHHHHHHHHHHcCC--cEEEEccCCCC
Q psy893            1 EAGHNGLVSAAYLARAGL--SVAVLERRHVL   29 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~--~V~vlE~~~~~   29 (523)
                      |||++|+.+|..|++.|+  +|+++++...+
T Consensus        11 G~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1          11 GGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            899999999999999886  59999886654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=1.3  Score=33.52  Aligned_cols=50  Identities=16%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             HHHHHHHHHCC-cEEEeCceeeEEEECCCCCeEEEE-e---CCe--EEEcCEEEEcCC
Q psy893          234 QALARSAQASG-AQLFTSQTVTEITLDSDKRASGVV-T---NGL--EIKAKYVLSNTT  284 (523)
Q Consensus       234 ~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~~~~v~-~---~g~--~~~ad~vI~a~~  284 (523)
                      +.+.+.+.+++ +++++|++|.+|.-++ +++.+|+ .   +|+  ++.+|.|.++++
T Consensus        69 ~~~~~~~~~~~~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          69 QVLQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccccccccceeEEcCcceEEEEccc-cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            34555666654 9999999999999886 6788887 3   343  688999998875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.61  E-value=0.55  Score=37.33  Aligned_cols=46  Identities=17%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             HHHHHHHHCCcEEEeCceeeEEEECCCCCeEEEEeCCe--EEEcCEEEEcCC
Q psy893          235 ALARSAQASGAQLFTSQTVTEITLDSDKRASGVVTNGL--EIKAKYVLSNTT  284 (523)
Q Consensus       235 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~~~v~~~g~--~~~ad~vI~a~~  284 (523)
                      .+...++..|++++.++.|.+|..+  + + .+..+|+  ++.||.||+|++
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~~--g-v-~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDDD--G-L-HVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEETT--E-E-EEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcCC--C-C-EEecCCeEEEEECCEEEECCC
Confidence            4566777899999999999999632  3 2 2334444  578999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.90  E-value=0.39  Score=36.86  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|--|...|..|.++|++|+|+|+++.
T Consensus         7 G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           7 GIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            8999999999999999999999999764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=83.72  E-value=0.41  Score=38.30  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=25.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |+|.+|+.|+..+.+.|-+|+++|.+.
T Consensus        39 GaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          39 GGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            899999999999999999999999854

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=83.50  E-value=0.59  Score=43.32  Aligned_cols=27  Identities=37%  Similarity=0.479  Sum_probs=24.9

Q ss_pred             CCChhHHHHHHHHHHcC-CcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAG-LSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G-~~V~vlE~~~   27 (523)
                      |||.+|+..|.+|+++| ++|+|||+..
T Consensus        24 GsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          24 GGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            89999999999999986 8999999964

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.19  E-value=0.38  Score=34.68  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=19.2

Q ss_pred             ChhHHHH-HHHHHHcCCcEEEEccCC
Q psy893            3 GHNGLVS-AAYLARAGLSVAVLERRH   27 (523)
Q Consensus         3 G~~GL~a-A~~La~~G~~V~vlE~~~   27 (523)
                      |=+|+++ |..|.++|++|+--|...
T Consensus        17 gG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1          17 GGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3344444 899999999999999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=81.27  E-value=0.59  Score=37.88  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |+|.+|+.||....+-|-+|+++|.+..
T Consensus        36 GaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          36 GVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            8999999999999999999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.88  E-value=0.83  Score=36.27  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |||.+|+.+|..|++ +.+|+|+|+.+.
T Consensus         7 GgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           7 GNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            899999999999965 779999987654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.73  E-value=0.51  Score=36.18  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=26.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRHV   28 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~~   28 (523)
                      |.|-.|-..|..|.+.|++|+|+|+++.
T Consensus         7 G~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            8999999999999999999999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=80.33  E-value=0.62  Score=37.22  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=25.2

Q ss_pred             CCChhHHHHHHHHHHcCCcEEEEccCC
Q psy893            1 EAGHNGLVSAAYLARAGLSVAVLERRH   27 (523)
Q Consensus         1 GaG~~GL~aA~~La~~G~~V~vlE~~~   27 (523)
                      |.|..|.+-|..|+++|++|++++++.
T Consensus         7 G~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           7 GLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            889999999999999999999999864