Psyllid ID: psy8942

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSSIC
cccccccccccccccccHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHcccEEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEEEccccccccHHEEccccccccccEEEEEEEEEEEEEEEEEccccccc
ccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcEcEccccccEHccccccccccccccccccccccccEEEcccccccEEEEccccEcccHHHcEcccccccHHcEEEEcccccccccEHHEEcccccccccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEEEcccHHHHHHHHHHHHHcccEEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHcccccccccEEEEEEEEEEEEEEEEEccccccc
maekntlfdwnqdglidreeFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYsldwhpsnhisfidniklrkihytstvqpedaqtydtvvfdgdtpmkqklwprhcvqdswgaelhKDLKIVDNAIKVYmgtdpeedsysvfwdskklkRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDccrgmdlddiERTRNTILENygscvqsdevksmvegkdrrpeLGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLlriptyldsrytIVWYGTIVYTYVIIGTKHSSIC
maekntlfdwnqdgliDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTstvqpedaqtyDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTslakqleakkvtdvyVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTIlenygscvqsdevksmvegkdrrPELGLKLALELKAKCIGSLYVRViesnnstsqniITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSSIC
MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPelglklalelkakCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSSIC
*****TLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNM******QNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQ***************ELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGT******
*AEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHS***
MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSSIC
MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKH****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
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MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSSIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
P21369213 Pyrazinamidase/nicotinami N/A N/A 0.529 0.845 0.352 3e-25
P53184216 Nicotinamidase OS=Sacchar yes N/A 0.547 0.861 0.318 5e-22
Q9USS0220 Nicotinamidase OS=Schizos yes N/A 0.517 0.8 0.313 3e-15
>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12) GN=pncA PE=3 SV=1 Back     alignment and function desciption
 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 35  PKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLD--TVNFNAVFYSLDWHPS 92
           P  ALL++++QNDF +G        A   G   ++  N+L+D       AV  S DWHP+
Sbjct: 2   PPRALLLVDLQNDFCAGG-----ALAVPEGDSTVDVANRLIDWCQSRGEAVIASQDWHPA 56

Query: 93  NHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKD 152
           NH SF              V+P     Y     DG   + Q  WP HCVQ+S GA+LH  
Sbjct: 57  NHGSFASQ---------HGVEP-----YTPGQLDG---LPQTFWPDHCVQNSEGAQLHPL 99

Query: 153 LKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGA 212
           L     A   + G +P  DSYS F+D+ + ++TSL   L   ++ ++ V GLA D CV  
Sbjct: 100 LHQKAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKF 159

Query: 213 SAIDAITIGYRTILIEDCCRGMDL 236
           + +DA+ +GY+  +I D CRG+++
Sbjct: 160 TVLDALQLGYKVNVITDGCRGVNI 183

Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9
>sp|P53184|PNC1_YEAST Nicotinamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNC1 PE=1 SV=1 Back     alignment and function description
>sp|Q9USS0|PNC1_SCHPO Nicotinamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnc1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
91092748332 PREDICTED: similar to pyrazinamidase/nic 0.826 0.846 0.676 1e-117
157167903355 pyrazinamidase/nicotinamidase [Aedes aeg 0.826 0.791 0.693 1e-117
347965895371 AGAP001435-PA [Anopheles gambiae str. PE 0.811 0.743 0.702 1e-117
195450156357 GK22349 [Drosophila willistoni] gi|19416 0.814 0.775 0.653 1e-111
242014075344 Nicotinamidase, putative [Pediculus huma 0.808 0.799 0.672 1e-111
383865508 585 PREDICTED: uncharacterized protein LOC10 0.832 0.483 0.639 1e-111
195112126357 GI22421 [Drosophila mojavensis] gi|19391 0.814 0.775 0.646 1e-111
340711590 586 PREDICTED: hypothetical protein LOC10065 0.832 0.482 0.643 1e-110
390179623341 GA27584 [Drosophila pseudoobscura pseudo 0.814 0.812 0.649 1e-110
195054533357 GH15190 [Drosophila grimshawi] gi|193896 0.811 0.773 0.644 1e-110
>gi|91092748|ref|XP_973348.1| PREDICTED: similar to pyrazinamidase/nicotinamidase [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 238/281 (84%)

Query: 1   MAEKNTLFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSA 60
           + E   +FD N DG IDREEF FCWN WIK+IVRP SA L+++VQNDF+SGTLN+S  SA
Sbjct: 44  LRETFNVFDGNNDGFIDREEFVFCWNHWIKIIVRPISAFLIVDVQNDFISGTLNISNCSA 103

Query: 61  KQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTY 120
           +QNGL+V+EPIN LLDTV F+ VFYSLDWHPSNH+SFIDNI  R+IH +S V  E+AQTY
Sbjct: 104 QQNGLEVVEPINHLLDTVQFDVVFYSLDWHPSNHVSFIDNIGQREIHPSSPVTAENAQTY 163

Query: 121 DTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSK 180
           DTV+F G  PMKQ+LWPRHCVQD+WG+ELHKDLK+V+N+IKVY GT+P+ DSYSVFWD+K
Sbjct: 164 DTVIFAGPPPMKQRLWPRHCVQDTWGSELHKDLKVVENSIKVYKGTNPDVDSYSVFWDNK 223

Query: 181 KLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIE 240
           K+  T+L  QL  +  TD+Y+CGLAYDVCVGA+A+DA+ IGYRTIL++DC RG+DL DIE
Sbjct: 224 KMTDTTLCAQLRMRNATDIYICGLAYDVCVGATAVDALAIGYRTILLDDCSRGVDLMDIE 283

Query: 241 RTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALELK 281
           +T+NT+++N G  + S++VK+MVEG+DRRPELG KLA+ELK
Sbjct: 284 KTKNTVIKNNGVIINSNQVKAMVEGRDRRPELGYKLAMELK 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157167903|ref|XP_001662895.1| pyrazinamidase/nicotinamidase [Aedes aegypti] gi|108881512|gb|EAT45737.1| AAEL002995-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347965895|ref|XP_321695.5| AGAP001435-PA [Anopheles gambiae str. PEST] gi|333470305|gb|EAA01751.5| AGAP001435-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195450156|ref|XP_002072389.1| GK22349 [Drosophila willistoni] gi|194168474|gb|EDW83375.1| GK22349 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|242014075|ref|XP_002427723.1| Nicotinamidase, putative [Pediculus humanus corporis] gi|212512164|gb|EEB14985.1| Nicotinamidase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383865508|ref|XP_003708215.1| PREDICTED: uncharacterized protein LOC100879942 [Megachile rotundata] Back     alignment and taxonomy information
>gi|195112126|ref|XP_002000627.1| GI22421 [Drosophila mojavensis] gi|193917221|gb|EDW16088.1| GI22421 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|340711590|ref|XP_003394358.1| PREDICTED: hypothetical protein LOC100650841 [Bombus terrestris] Back     alignment and taxonomy information
>gi|390179623|ref|XP_002138089.2| GA27584 [Drosophila pseudoobscura pseudoobscura] gi|388859924|gb|EDY68647.2| GA27584 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195054533|ref|XP_001994179.1| GH15190 [Drosophila grimshawi] gi|193896049|gb|EDV94915.1| GH15190 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
FB|FBgn0051216357 Naam "Nicotinamide amidase" [D 0.776 0.739 0.643 3.5e-98
WB|WBGene00021395335 pnc-1 [Caenorhabditis elegans 0.655 0.665 0.347 9.2e-36
WB|WBGene00013336316 pnc-2 [Caenorhabditis elegans 0.705 0.759 0.310 3.1e-35
DICTYBASE|DDB_G0293618209 pncA "nicotinamidase" [Dictyos 0.505 0.822 0.351 9.1e-29
UNIPROTKB|Q9KLN1206 VC_A0712 "Pyrazinamidase/nicot 0.308 0.509 0.4 2.5e-26
TIGR_CMR|VC_A0712206 VC_A0712 "pyrazinamidase/nicot 0.308 0.509 0.4 2.5e-26
SGD|S000003005216 PNC1 "Nicotinamidase that conv 0.55 0.865 0.325 2.3e-23
TIGR_CMR|GSU_2290201 GSU_2290 "pyrazinamidase/nicot 0.308 0.522 0.425 2.5e-21
UNIPROTKB|G4MWG0230 MGG_08976 "Nicotinamidase" [Ma 0.605 0.895 0.320 1e-20
UNIPROTKB|P21369213 pncA "pyrazinamidase / nicotin 0.432 0.690 0.333 5.8e-18
FB|FBgn0051216 Naam "Nicotinamide amidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 170/264 (64%), Positives = 219/264 (82%)

Query:     7 LFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQ 66
             +FD N DG IDREEF FCWN+WIK IVRP +A L+++VQNDF+SG+L++S  SA+Q G +
Sbjct:    67 VFDTNGDGFIDREEFKFCWNQWIKTIVRPVNAFLIVDVQNDFISGSLDISNCSAQQQGHE 126

Query:    67 VIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFD 126
             ++EPINKLLDTV+F+AVFYSLDWHPS+H+SFIDN+K+R +  +S +  + A+ +DTV+F 
Sbjct:   127 ILEPINKLLDTVDFDAVFYSLDWHPSDHVSFIDNVKMRPMDESSALDSDSAKVFDTVIFA 186

Query:   127 GDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTS 186
             G  PMKQ+LWPRHCVQDSWGAELHKDLK+VD+ IKVY GT+PE DSYSVFWD+KKL  T+
Sbjct:   187 GPPPMKQRLWPRHCVQDSWGAELHKDLKVVDHGIKVYKGTNPEVDSYSVFWDNKKLSDTT 246

Query:   187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTI 246
             L  QL+ K  TD+YVCGLAYDVCVGA+A+DA++ GYRTILI+DCCRG D+ DIE T+  +
Sbjct:   247 LNAQLKMKGATDIYVCGLAYDVCVGATAVDALSAGYRTILIDDCCRGTDVHDIEHTKEKV 306

Query:   247 LENYGSCVQSDEVKSMVEGKDRRP 270
               + G  V +++VK+M EG+DRRP
Sbjct:   307 NTSDGVIVHTNQVKAMAEGRDRRP 330
GO:0008152 "metabolic process" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0008936 "nicotinamidase activity" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA
WB|WBGene00021395 pnc-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00013336 pnc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293618 pncA "nicotinamidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLN1 VC_A0712 "Pyrazinamidase/nicotinamidase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0712 VC_A0712 "pyrazinamidase/nicotinamidase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
SGD|S000003005 PNC1 "Nicotinamidase that converts nicotinamide to nicotinic acid" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2290 GSU_2290 "pyrazinamidase/nicotinamidase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWG0 MGG_08976 "Nicotinamidase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|P21369 pncA "pyrazinamidase / nicotinamidase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 7e-73
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 2e-60
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 3e-39
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 5e-35
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 1e-29
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 7e-22
cd01015179 cd01015, CSHase, N-carbamoylsarcosine amidohydrola 4e-07
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 1e-06
cd01012157 cd01012, YcaC_related, YcaC related amidohydrolase 4e-04
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information 
 Score =  223 bits (571), Expect = 7e-73
 Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 25/209 (11%)

Query: 36  KSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNH 94
             ALLV++VQNDF   G L +        G  ++  IN LL    ++ V  + DWHP+NH
Sbjct: 1   TDALLVVDVQNDFCPGGALAVPG------GDAIVPLINALLSLFQYDLVVATQDWHPANH 54

Query: 95  ISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLK 154
            SF  N                   + T       P  Q LWP HCVQ + GAELH  L 
Sbjct: 55  ASFASN-------------HPGQMPFIT-----LPPGPQVLWPDHCVQGTPGAELHPGLP 96

Query: 155 IVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASA 214
           + D  + V  GT+P+ DSYS F+D+ +   T LA+ L  + +  V V GLA D CV A+A
Sbjct: 97  VPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATA 156

Query: 215 IDAITIGYRTILIEDCCRGMDLDDIERTR 243
           +DA+  G+   ++ED CR +D + IER  
Sbjct: 157 LDALKAGFEVRVLEDACRAVDPETIERAI 185

Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA). Length = 196
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
PRK11440188 putative hydrolase; Provisional 100.0
KOG4003|consensus223 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
PLN02621197 nicotinamidase 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 100.0
PLN02743239 nicotinamidase 99.97
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 99.97
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 99.96
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 99.96
KOG4044|consensus201 99.86
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-40  Score=304.36  Aligned_cols=203  Identities=39%  Similarity=0.679  Sum_probs=173.5

Q ss_pred             cCCCCeEEEEecccccccC-CCccccccccCCChHHHHHHHHHHHHHhccCcEEEEeccCCCCccchhhhhhhhhccCCC
Q psy8942          32 IVRPKSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTS  110 (340)
Q Consensus        32 i~~~ktALLVIDmQndF~~-G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s  110 (340)
                      +++.++|||||||||||++ |.+..      ++..++++++++|+++++...|++++++|++.|..|..++.+.+     
T Consensus         8 ~~~~~~ALlVIDmQndF~~~g~l~~------~~~~~iv~~i~~l~~~~~~~~Vi~~~d~h~~~~~~~~~~~~~~~-----   76 (212)
T PTZ00331          8 VSSTNDALIIVDVQNDFCKGGSLAV------PDAEEVIPVINQVRQSHHFDLVVATQDWHPPNHISFASNHGKPK-----   76 (212)
T ss_pred             cCCCCCEEEEEcCCCCCCCCCccCC------CCHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCcChhhcCCCCC-----
Confidence            5678999999999999996 66543      57899999999999976666899999999998887754322111     


Q ss_pred             CCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHH
Q psy8942         111 TVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQ  190 (340)
Q Consensus       111 ~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~  190 (340)
                       +.+              .+.....||+||++|+||++++|+|.+.++++++.|+.+|++++||+|. .++..+|+|+.+
T Consensus        77 -~~~--------------~~~~~~~~~~h~~~gs~g~~i~~~L~~~~~~~vi~K~~~~~~~~~saF~-~~~~~~t~L~~~  140 (212)
T PTZ00331         77 -ILP--------------DGTTQGLWPPHCVQGTKGAQLHKDLVVERIDIIIRKGTNRDVDSYSAFD-NDKGSKTGLAQI  140 (212)
T ss_pred             -ccc--------------CCCccCCCcccccCCCCcccCChhhccCCCcEEEECCCCCCCceecCcc-CCCCCCchHHHH
Confidence             000              0112457999999999999999999999999999999988999999991 111129999999


Q ss_pred             HHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHH
Q psy8942         191 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKS  261 (340)
Q Consensus       191 L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~  261 (340)
                      |+++|+++|+|||++||+||.+|+++|.++||+|+|++|||++++++.|+++++.|...|+.|+++++++.
T Consensus       141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~~~~~~~  211 (212)
T PTZ00331        141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLTSSDLVA  211 (212)
T ss_pred             HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEeHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999864

>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>KOG4003|consensus Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>PLN02743 nicotinamidase Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4044|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
2wt9_A235 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 2e-28
2wta_A213 Acinetobacter Baumanii Nicotinamidase Pyrazinamidea 6e-27
2h0r_A216 Structure Of The Yeast Nicotinamidase Pnc1p Length 4e-23
3v8e_A216 Crystal Structure Of The Yeast Nicotinamidase Pnc1p 7e-22
1im5_A180 Crystal Structure Of Pyrazinamidase Of Pyrococcus H 8e-22
3r2j_A227 Crystal Structure Of Pnc1 From L. Infantum In Compl 1e-17
3pl1_A186 Determination Of The Crystal Structure Of The Pyraz 3e-08
3o90_A211 High Resolution Crystal Structures Of Streptococcus 2e-04
3eef_A182 Crystal Structure Of N-Carbamoylsarcosine Amidase F 2e-04
3s2s_A217 The Crystal Structure Of PyrazinamidaseNICOTINAMIDA 6e-04
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 24/210 (11%)
Query: 29  IKVIVRPK-SALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSL 87
           +K+  +P+ SAL+V++VQN F  G  N++   A      +I  IN+L     F  V  + 
Sbjct: 22  MKMNKQPQNSALVVVDVQNGFTPGG-NLAVADADT----IIPTINQLAGC--FENVVLTQ 74
Query: 88  DWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGA 147
           DWHP NHISF  N   +             Q ++T+  D  +   Q LWP+HC+Q +  A
Sbjct: 75  DWHPDNHISFAANHPGK-------------QPFETIELDYGS---QVLWPKHCIQGTHDA 118
Query: 148 ELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYD 207
           E H DL I    + +  G     DSYS F ++     T L   L+ + +  VYV G+A D
Sbjct: 119 EFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATD 178
Query: 208 VCVGASAIDAITIGYRTILIEDCCRGMDLD 237
            CV  +A+DA+  G++T++IED C+G+DL+
Sbjct: 179 FCVAWTALDAVKQGFKTLVIEDACKGIDLN 208
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p Length = 216 Back     alignment and structure
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound To The Inhibitor Nicotinaldehyde Length = 216 Back     alignment and structure
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus Horikoshii In Complex With Zinc Length = 180 Back     alignment and structure
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With Nicotinate Length = 227 Back     alignment and structure
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The Pyrazinamidase From M.Tuberculosis : A Structure-Function Analysis For Prediction Resistance To Pyrazinamide Length = 186 Back     alignment and structure
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From Thermoplasma Acidophilum Length = 182 Back     alignment and structure
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM Streptococcus Mutans Ua159 Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 9e-64
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 2e-63
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 9e-59
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 4e-55
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 5e-53
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 5e-47
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 1e-37
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 4e-37
3hu5_A204 Isochorismatase family protein; structural genomic 4e-35
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 1e-29
3txy_A199 Isochorismatase family protein family; structural 3e-27
3kl2_A226 Putative isochorismatase; structural genomics, unk 4e-27
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 2e-26
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 5e-25
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 2e-24
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 8e-23
3oqp_A211 Putative isochorismatase; catalytic triad, structu 2e-22
1j2r_A199 Hypothetical isochorismatase family protein YECD; 2e-20
3lqy_A190 Putative isochorismatase hydrolase; structural gen 1e-17
2a67_A167 Isochorismatase family protein; structural genomic 2e-14
3mcw_A198 Putative hydrolase; isochorismatase family, struct 3e-14
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 3e-05
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 7e-04
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
 Score =  201 bits (512), Expect = 9e-64
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 41/230 (17%)

Query: 32  IVRPKSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDW 89
           +      L++ ++Q DF++  G+L        + G  +++ IN +   + F     + DW
Sbjct: 30  VSSTTDVLIIADMQVDFLAPGGSL------HVKGGEALLDGINAVSSQLPFRYQVATQDW 83

Query: 90  HPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAEL 149
           HP NH SF+ +                                   WP HCVQ S GA+L
Sbjct: 84  HPENHCSFVTH--------------------------------GGPWPPHCVQGSAGAQL 111

Query: 150 HKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVC 209
           H  L        +  G   + DSYS F +      T LA  L +     V+VCG+AYD C
Sbjct: 112 HAGLHTQRINAVIRKGVTQQADSYSAFVEDNG-VSTGLAGLLHSIGARRVFVCGVAYDFC 170

Query: 210 VGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEV 259
           V  +A+DA   G+  +L+ED    +D          + +     ++S  +
Sbjct: 171 VFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAELKDAGVVLLKSSAL 220
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 100.0
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 100.0
1x9g_A200 Putative MAR1; structural genomics, protein struct 100.0
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
Probab=100.00  E-value=8.4e-44  Score=324.99  Aligned_cols=206  Identities=31%  Similarity=0.563  Sum_probs=171.9

Q ss_pred             CeEEEEecccccccC--CCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCC
Q psy8942          36 KSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTST  111 (340)
Q Consensus        36 ktALLVIDmQndF~~--G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~  111 (340)
                      ++|||||||||||++  |.+++      ++.++++++|++|++++|..  +|++|+|||+.+|.+|..++.+.+  |++.
T Consensus         1 ~~ALlvID~QndF~~p~G~l~v------~~~~~iv~~i~~ll~~~r~~~~~Vi~t~d~H~~~h~sf~~~~~g~~--~f~~   72 (216)
T 3v8e_A            1 MKTLIVVDMQNDFISPLGSLTV------PKGEELINPISDLMQDADRDWHRIVVTRDWHPSRHISFAKNHKDKE--PYST   72 (216)
T ss_dssp             CEEEEEECCBHHHHSTTSTTCC------TTGGGGHHHHHHHHHCGGGCEEEEEEEEECBCTTCTTBGGGSTTCC--TTCE
T ss_pred             CcEEEEEcCcccccCCCCcccC------CCHHHHHHHHHHHHHHHhhcCCEEEEecccCCCcCcchHhcCCCCC--Ccce
Confidence            379999999999993  67754      57899999999999999875  899999999999999987643221  1111


Q ss_pred             CCCCCccccccccccCCCccccccCCccccCCCCcccccccccc---cCCceEEEcCCCCCCCcccccccccccCCchHH
Q psy8942         112 VQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI---VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLA  188 (340)
Q Consensus       112 l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p---~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~  188 (340)
                      +...++   .+   ......++.+||+||++||+|++|+++|.+   .+.+.+|.|+++|++++||+|+++.+..+|+|.
T Consensus        73 ~~~~~p---~~---~~~~~~~~~~wp~hcv~gt~G~ei~~~l~~~~~~~~~~vi~K~~~~~~~~ySaF~~~~~~~~t~L~  146 (216)
T 3v8e_A           73 YTYHSP---RP---GDDSTQEGILWPVHCVKNTWGSQLVDQIMDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMN  146 (216)
T ss_dssp             EEEECS---ST---TCCCEEEEECBCSCCBTTSGGGSBCHHHHHHHHHHTCEEEEECCSTTSCCCSSSBCTTSCSBCSHH
T ss_pred             eecccc---cc---ccccccccccCchhhcCCCCccccCHhHHhhhccCccEEEECCccCCCccccccccCCcCCCchHH
Confidence            000000   00   001123356899999999999999999998   467999999999999999999766556689999


Q ss_pred             HHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHH--HHHHHHHHHHhcCcEEec
Q psy8942         189 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLD--DIERTRNTILENYGSCVQ  255 (340)
Q Consensus       189 ~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~--~~~~al~~l~~~g~~v~t  255 (340)
                      .+|+++|+++|+|||++|++||.+||++|+++||+|+|++|||++++.+  .|+.+++.|.+.|+.+++
T Consensus       147 ~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~~~~~~al~~m~~~Gv~i~~  215 (216)
T 3v8e_A          147 KYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDYTRPISDDPEVINKVKEELKAHNINVVD  215 (216)
T ss_dssp             HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCCHHHHHHHHHHHHHTTCEEEC
T ss_pred             HHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEeccccCCCCcccHHHHHHHHHHHHcCCEEeC
Confidence            9999999999999999999999999999999999999999999999988  999999999999999875
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 3e-27
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 5e-19
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 7e-18
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 1e-17
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 3e-11
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 2e-10
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 47/223 (21%)

Query: 35  PKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPS 92
           P+ AL+V+++Q DF+ G            G ++I  +N+ +         +  + DWHP 
Sbjct: 1   PEEALIVVDMQRDFMPGG-----ALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPE 55

Query: 93  NHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKD 152
           NHISF                                  +   WPRHCVQ++ GAE   D
Sbjct: 56  NHISF--------------------------------RERGGPWPRHCVQNTPGAEFVVD 83

Query: 153 LKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGA 212
           L   ++A+ +   T+P++++YS F  +       LAK L    V  VY+CG+A + CV A
Sbjct: 84  LP--EDAVIISKATEPDKEAYSGFEGTD------LAKILRGNGVKRVYICGVATEYCVRA 135

Query: 213 SAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQ 255
           +A+DA+  G+   L+ D  +G+  +D ER    +       VQ
Sbjct: 136 TALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQ 178
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.97
d1ctda_34 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 90.69
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: YcaC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-38  Score=284.04  Aligned_cols=196  Identities=14%  Similarity=0.138  Sum_probs=164.6

Q ss_pred             hhhccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhh
Q psy8942          28 WIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRK  105 (340)
Q Consensus        28 ~~~~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~  105 (340)
                      |..+++++++|||||||||+|+++..       ..+..++++++++|++.||..  +|+++++.+..             
T Consensus         3 p~~~l~~~~tALlvID~Q~~f~~~~~-------~~~~~~~~~ni~~L~~~ar~~~~pvi~t~~~~~~-------------   62 (204)
T d1yaca_           3 PYVRLDKNDAAVLLVDHQAGLLSLVR-------DIEPDKFKNNVLALGDLAKYFNLPTILTTSAETG-------------   62 (204)
T ss_dssp             CCCCCCTTSEEEEEECCBTTGGGGCC-------SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESTTT-------------
T ss_pred             CcccCCcCCEEEEEEeChhhhhCccc-------ccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccCC-------------
Confidence            44679999999999999999997421       135789999999999999874  78887632100             


Q ss_pred             ccCCCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccc--cCCceEEEcCCCCCCCcccccccccccC
Q psy8942         106 IHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI--VDNAIKVYMGTDPEEDSYSVFWDSKKLK  183 (340)
Q Consensus       106 ~~p~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p--~~~d~vi~K~~~p~~~r~SaF~~~~~~~  183 (340)
                                                             .+..+.+++.+  .+.+.++.|      .+||+|.      
T Consensus        63 ---------------------------------------~~~~~~~~~~~~~~~~~~v~~K------~~~saf~------   91 (204)
T d1yaca_          63 ---------------------------------------PNGPLVPELKAQFPDAPYIARP------GNINAWD------   91 (204)
T ss_dssp             ---------------------------------------TTCCBCHHHHHHCTTSCEEEES------SCSSGGG------
T ss_pred             ---------------------------------------CCCccccccccccCCCCeEEec------Ccccccc------
Confidence                                                   00011222221  245788899      4899998      


Q ss_pred             CchHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHH
Q psy8942         184 RTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMV  263 (340)
Q Consensus       184 ~t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l  263 (340)
                      +|+|.++|+++|+++|+|||++||+||.+||++|+++||+|+|++|||++++++.|++||++|.+.|+.++|+++++.+|
T Consensus        92 ~t~L~~~L~~~gi~~lil~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~he~Al~~m~~~g~~i~t~e~v~~el  171 (204)
T d1yaca_          92 NEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACEL  171 (204)
T ss_dssp             SHHHHHHHHHTTCSEEEEEEBSCCCCCHHHHHHHHHTTCEEEEETTSCBCSSHHHHHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred             chhHHHHHHhcCCCEEEEEEeecccHHHHHHHHHHHcCCEEEEeCcccCCCChHHHHHHHHHHHHCCCEEecHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhhHHHHHHHHHhhcccchhhhhhccch
Q psy8942         264 EGKDRRPELGLKLALELKAKCIGSLYVRVIESNNS  298 (340)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  298 (340)
                      +++|. ++++ .++..+++  ++|.|+++|++|..
T Consensus       172 ~rd~~-~~~~-~~~~l~k~--~~~~~~~~~~~~~~  202 (204)
T d1yaca_         172 HRDWR-NDIA-GLATLFSN--HIPDYRNLMTSYDT  202 (204)
T ss_dssp             HCCGG-GCHH-HHHHHHHH--HCHHHHHHHHHHHH
T ss_pred             Hhhcc-cchH-HHHHHHHH--cCchHHHHHHHHHh
Confidence            99994 5544 68889988  99999999999863
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure