Psyllid ID: psy9053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEccccccccccEEEEccccccEEEEccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccHHHEcccEEEEcccccEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccEcccccccccEEEEEEHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSSTLMPYLKVVRHTLNAAMCLENfssqvverhnkpevevrtskellltpvlisrneKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFivlrrkpiegydiSFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Flexible Loop (DISEMBL)
MSSTLMPYLKVVRHTLNAAMCLENFssqvverhnkpevevrtskellltpvlisrnekekvliegsinsvrisiavkqaDEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICseeflkrf
Low Complexity Region (SEG)
MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Disordered region (IsUnstruct)
*****MPYLKVVRHTLNAAMCLENFSSQVVE*******EVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICS*******
Disordered Region (DISOPRED)
***TLMPYLKVVRHTLNAAMCLENFSSQVV**HNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Disordered Region (DISEMBL)
MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Disordered Region (DISPRO)
**STLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
P59999	168	Actin-related protein 2/3	yes	N/A	1.0	1.0	0.880	2e-83
P59998	168	Actin-related protein 2/3	yes	N/A	1.0	1.0	0.880	2e-83
Q148J6	168	Actin-related protein 2/3	yes	N/A	1.0	1.0	0.880	2e-83
P58798	169	Probable actin-related pr	yes	N/A	1.0	0.994	0.779	3e-75
O96625	169	Actin-related protein 2/3	yes	N/A	1.0	0.994	0.660	3e-67
Q92352	168	Actin-related protein 2/3	yes	N/A	1.0	1.0	0.636	3e-60
P33204	171	Actin-related protein 2/3	yes	N/A	1.0	0.982	0.656	2e-57

>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.
Mus musculus (taxid: 10090)

>sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1

 Score =  280 bits (716), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 154/168 (91%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL+ VRHTL AA+CLE FSSQVVERHNKPEVEV+TSKELL+TPV+++RN++E+
Sbjct: 1   MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE S+NSVRISIA+KQ+DEIEKILCHKF RFM  RA+NF VLRRKP+ GYDISFLIT 
Sbjct: 61  VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
            HTE M+KHKLVDF+LHFM+EIDKEISEMKL++NARAR+ +EEFLKRF
Sbjct: 121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Caenorhabditis elegans (taxid: 6239)

>sp|O96625|ARPC4_DICDI Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1

 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 147/168 (87%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+  +PYL  +R+TL A+MCL+NF SQ+VERHNKPEVEV+TSKEL+L PV+I+RN+ E+
Sbjct: 1   MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE SINS+RIS+++K++DE++ IL  KF+RF+  RAENFI+LRRKP+EGYDISFL+TN
Sbjct: 61  VLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTE M+KHKLVDF++ FME+ID+EIS++KL +NAR RI + E+LK F
Sbjct: 121 FHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

>sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1

 Score =  230 bits (586), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 138/168 (82%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VR TL A++ LE FSS++VER ++PEVEV  S E+LL P+++SRNE+E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
            LIE S+NSVR SI +KQ DEIE+IL  KFM+F+M RAE+F +LRRKP++GYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           +HTE+M KHKLVDF++ FMEE+D EISEMKL +N RAR+ +E +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1 SV=2

 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 132/169 (78%), Gaps = 1/169 (0%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEV-RTSKELLLTPVLISRNEKE 59
           MS +L PYL  VR++L AA+ L NFSSQ VERHN+PEVEV  TS ELLL P+ ISRNE E
Sbjct: 1   MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60

Query: 60  KVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLIT 119
           +VLIE S+NSVR+S+ VKQADEIE+IL HKF RF+  RAE F +LRR PI GY ISFLIT
Sbjct: 61  QVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLIT 120

Query: 120 NFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           N HTE M   KLVDF++ FME++DKEISE+KL +NARAR  +E +L  F
Sbjct: 121 NKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
427782577	168	Putative actin related protein 2/3 compl	1.0	1.0	0.922	4e-86
312375160	168	hypothetical protein AND_14509 [Anophele	1.0	1.0	0.910	8e-85
346470483	177	hypothetical protein [Amblyomma maculatu	0.994	0.943	0.916	8e-85
157120564	168	arp2/3 complex 20 kd subunit [Aedes aegy	1.0	1.0	0.910	1e-84
58396352	168	AGAP001306-PA [Anopheles gambiae str. PE	1.0	1.0	0.904	2e-84
91085067	168	PREDICTED: similar to arp2/3 complex 20	1.0	1.0	0.910	5e-84
301779329	1089	PREDICTED: tubulin monoglycylase TTLL3-l	0.988	0.152	0.885	7e-84
442756543	168	Putative actin-related protein arp2/3 co	1.0	1.0	0.892	9e-84
2760013	168	actin related protein [Lumbricus rubellu	1.0	1.0	0.886	1e-83
242004295	194	arp2/3 complex 20 kD subunit, putative [	0.994	0.860	0.898	4e-83

>gi|427782577|gb|JAA56740.1| Putative actin related protein 2/3 complex subunit 4 [Rhipicephalus pulchellus]

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/168 (92%), Positives = 164/168 (97%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VRHTLNAAMCLENFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKEK
Sbjct: 1   MSATLRPYLTAVRHTLNAAMCLENFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINS+RISIA+KQAD+IE ILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN
Sbjct: 61  VLIEGSINSLRISIAIKQADDIEHILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKLA+NARARIC+EEFLKRF
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLALNARARICAEEFLKRF 168

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375160|gb|EFR22583.1| hypothetical protein AND_14509 [Anopheles darlingi]

 Score =  317 bits (813), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 153/168 (91%), Positives = 161/168 (95%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VRHTL AAMCL NFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKE+
Sbjct: 1   MAATLKPYLTAVRHTLTAAMCLSNFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE S+NSVRISIAVKQADEIEKILCHKF RFMMMRAENFI+LRRKPIEGYDISFLITN
Sbjct: 61  VLIETSVNSVRISIAVKQADEIEKILCHKFTRFMMMRAENFIILRRKPIEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKLAVNARARICSEEFLKRF
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470483|gb|AEO35086.1| hypothetical protein [Amblyomma maculatum]

 Score =  317 bits (813), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 153/167 (91%), Positives = 162/167 (97%)

Query: 2   SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
           S+TL PYL  VRHTLNAAMCLENFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKEKV
Sbjct: 11  SATLRPYLTAVRHTLNAAMCLENFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKEKV 70

Query: 62  LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
           LIE SINS+RISIA+KQAD+IE ILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF
Sbjct: 71  LIEASINSLRISIAIKQADDIEHILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 130

Query: 122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           HTEQMYKHKLVDFV+HFMEEIDKEISEMKLA+NARARIC+EEFLKRF
Sbjct: 131 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLALNARARICAEEFLKRF 177

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120564|ref|XP_001653666.1| arp2/3 complex 20 kd subunit [Aedes aegypti] gi|157120566|ref|XP_001653667.1| arp2/3 complex 20 kd subunit [Aedes aegypti] gi|157120568|ref|XP_001653668.1| arp2/3 complex 20 kd subunit [Aedes aegypti] gi|157120570|ref|XP_001653669.1| arp2/3 complex 20 kd subunit [Aedes aegypti] gi|170058552|ref|XP_001864970.1| ARP2/3 complex 20 kDa subunit [Culex quinquefasciatus] gi|108874906|gb|EAT39131.1| AAEL009041-PB [Aedes aegypti] gi|108874907|gb|EAT39132.1| AAEL009041-PD [Aedes aegypti] gi|108874908|gb|EAT39133.1| AAEL009041-PA [Aedes aegypti] gi|108874909|gb|EAT39134.1| AAEL009041-PC [Aedes aegypti] gi|167877602|gb|EDS40985.1| ARP2/3 complex 20 kDa subunit [Culex quinquefasciatus]

 Score =  317 bits (812), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/168 (91%), Positives = 161/168 (95%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VRHTL AAMCL NFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKE+
Sbjct: 1   MAATLKPYLTAVRHTLTAAMCLTNFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE S+NSVRISIAVKQADEIEKILCHKF RFMMMRAENFI+LRRKPIEGYDISFLITN
Sbjct: 61  VLIETSVNSVRISIAVKQADEIEKILCHKFTRFMMMRAENFIILRRKPIEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKLAVNARARICSEEFLKRF
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58396352|ref|XP_321841.2| AGAP001306-PA [Anopheles gambiae str. PEST] gi|55234038|gb|EAA01786.3| AGAP001306-PA [Anopheles gambiae str. PEST]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/168 (90%), Positives = 161/168 (95%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VRHTL AAMCL NFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKE+
Sbjct: 1   MAATLKPYLTAVRHTLTAAMCLSNFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE S+NSVRISIAVKQADEIEKILCHKF RFMMMRAENFI+LRRKPI+GYDISFLITN
Sbjct: 61  VLIETSVNSVRISIAVKQADEIEKILCHKFTRFMMMRAENFIILRRKPIDGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKLAVNARARICSEEFLKRF
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085067|ref|XP_966737.1| PREDICTED: similar to arp2/3 complex 20 kd subunit [Tribolium castaneum] gi|270009038|gb|EFA05486.1| hypothetical protein TcasGA2_TC015671 [Tribolium castaneum]

 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/168 (91%), Positives = 160/168 (95%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VRHTL AAMCLENFSSQVVERHNKPEVEVR+SKELLLTPV+ISRNEKEK
Sbjct: 1   MSATLRPYLTAVRHTLTAAMCLENFSSQVVERHNKPEVEVRSSKELLLTPVVISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           V IE S+NSVRISIAVKQADEIEKILC KFMRFMMMRAENF+VLRRKPIEGYDISFLITN
Sbjct: 61  VFIETSVNSVRISIAVKQADEIEKILCKKFMRFMMMRAENFVVLRRKPIEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKE+SEMKLAVNARARI SEEFLKRF
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEVSEMKLAVNARARIVSEEFLKRF 168

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301779329|ref|XP_002925089.1| PREDICTED: tubulin monoglycylase TTLL3-like [Ailuropoda melanoleuca]

 Score =  314 bits (805), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 147/166 (88%), Positives = 157/166 (94%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|442756543|gb|JAA70430.1| Putative actin-related protein arp2/3 complex subunit arpc4 [Ixodes ricinus]

 Score =  314 bits (804), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 150/168 (89%), Positives = 163/168 (97%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VRHTLNAAMCLENFSSQVVERHNKPEVEVR+SKELLL PV+ISRNEKEK
Sbjct: 1   MSATLRPYLTAVRHTLNAAMCLENFSSQVVERHNKPEVEVRSSKELLLNPVVISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINS+R+SIA+KQAD+IE ILCHKFMRFMMMRAENFIVLRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSLRVSIAIKQADDIEHILCHKFMRFMMMRAENFIVLRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQM+KHKLVDFV++FMEEIDKEISEMKLA+NARARIC+EEFLKRF
Sbjct: 121 FHTEQMFKHKLVDFVINFMEEIDKEISEMKLALNARARICAEEFLKRF 168

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2760013|emb|CAA11175.1| actin related protein [Lumbricus rubellus]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 162/168 (96%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYLK VR TL AA+C+ENFSSQVVERHNKPEVEVRTSKELLLTPV ISRNEKEK
Sbjct: 1   MSTTLQPYLKAVRQTLTAAICVENFSSQVVERHNKPEVEVRTSKELLLTPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINS+RISIA+K+ADEIEKILCHKFMRFMMMRAENFI+LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSLRISIAIKRADEIEKILCHKFMRFMMMRAENFIILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHK+VDF++HFMEEIDKEISEMKLAVN+RARI +EEFLKRF
Sbjct: 121 FHTEQMYKHKIVDFIIHFMEEIDKEISEMKLAVNSRARISAEEFLKRF 168

Source: Lumbricus rubellus

Species: Lumbricus rubellus

Genus: Lumbricus

Family: Lumbricidae

Order: Haplotaxida

Phylum: Annelida

Superkingdom: Eukaryota

>gi|242004295|ref|XP_002423038.1| arp2/3 complex 20 kD subunit, putative [Pediculus humanus corporis] gi|212505969|gb|EEB10300.1| arp2/3 complex 20 kD subunit, putative [Pediculus humanus corporis]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/167 (89%), Positives = 160/167 (95%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           +++TL PYL  VRHTL AAMCL+NFSSQVVERHNKPEVEVRTSKELLLTPV+ISRNEKE+
Sbjct: 5   IAATLRPYLTAVRHTLTAAMCLDNFSSQVVERHNKPEVEVRTSKELLLTPVIISRNEKER 64

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIE S+NSVRISIAVKQAD+IE ILCHKFMRFMMMRAENF+VLRRKPIEGYDISFLITN
Sbjct: 65  VLIESSVNSVRISIAVKQADDIEHILCHKFMRFMMMRAENFVVLRRKPIEGYDISFLITN 124

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKR 167
           FH EQMYKHKLVDFV+HFMEEIDKEISEMKLAVNARARICSEEFLKR
Sbjct: 125 FHVEQMYKHKLVDFVIHFMEEIDKEISEMKLAVNARARICSEEFLKR 171

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
UNIPROTKB|Q148J6	168	ARPC4 "Actin-related protein 2	1.0	1.0	0.880	2.7e-75
UNIPROTKB|P59998	168	ARPC4 "Actin-related protein 2	1.0	1.0	0.880	2.7e-75
MGI|MGI:1915339	168	Arpc4 "actin related protein 2	1.0	1.0	0.880	2.7e-75
RGD|1310096	168	Arpc4 "actin related protein 2	1.0	1.0	0.880	2.7e-75
UNIPROTKB|F1SQE6	167	ARPC4 "Uncharacterized protein	0.994	1.0	0.880	9.3e-75
UNIPROTKB|F8WCF6	181	ARPC4 "Actin-related protein 2	0.988	0.917	0.885	1.2e-74
ZFIN|ZDB-GENE-010724-9	193	arpc4 "actin related protein 2	0.994	0.865	0.874	1.2e-74
UNIPROTKB|E2QWU0	167	ARPC4 "Uncharacterized protein	0.982	0.988	0.884	4e-74
FB|FBgn0031781	168	Arpc4 "Actin-related protein 2	1.0	1.0	0.827	8.6e-72
WB|WBGene00000204	169	arx-6 [Caenorhabditis elegans	1.0	0.994	0.779	3.5e-68

UNIPROTKB|Q148J6 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Bos taurus (taxid:9913)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|P59998 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0051015 "actin filament binding" evidence=NAS

GO:0045010 "actin nucleation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1915339 Arpc4 "actin related protein 2/3 complex, subunit 4" [Mus musculus (taxid:10090)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=ISO;TAS

GO:0008150 "biological_process" evidence=ND

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

RGD|1310096 Arpc4 "actin related protein 2/3 complex, subunit 4" [Rattus norvegicus (taxid:10116)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1SQE6 ARPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 147/167 (88%), Positives = 157/167 (94%)

Query:     2 SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
             ++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEKV
Sbjct:     1 TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKV 60

Query:    62 LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
             LIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITNF
Sbjct:    61 LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 120

Query:   122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             HTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   121 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 167

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|F8WCF6 ARPC4 "Actin-related protein 2/3 complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 147/166 (88%), Positives = 157/166 (94%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct:     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct:    61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166
             FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK
Sbjct:   121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

ZFIN|ZDB-GENE-010724-9 arpc4 "actin related protein 2/3 complex, subunit 4" [Danio rerio (taxid:7955)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 146/167 (87%), Positives = 158/167 (94%)

Query:     2 SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
             ++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV+ISRN+KEKV
Sbjct:    27 TATLRPYLNAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVVISRNDKEKV 86

Query:    62 LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
             LIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITNF
Sbjct:    87 LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 146

Query:   122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             HTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct:   147 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 193

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|E2QWU0 ARPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 146/165 (88%), Positives = 156/165 (94%)

Query:     2 SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
             ++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEKV
Sbjct:     2 TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKV 61

Query:    62 LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
             LIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITNF
Sbjct:    62 LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 121

Query:   122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK 166
             HTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK
Sbjct:   122 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

FB|FBgn0031781 Arpc4 "Actin-related protein 2/3 complex, subunit 4" [Drosophila melanogaster (taxid:7227)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 139/168 (82%), Positives = 157/168 (93%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             M++TL PYL  VRH+L AAMCL++F SQVVERHNKPEVE+ +SKEL+LTPV++SRNE+EK
Sbjct:     1 MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTPVVVSRNEREK 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIE SINSVR+SIAVKQADEIE+ILCHKF RFMM RAE+F++LRRKPIEGYDISFLITN
Sbjct:    61 VLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAESFVILRRKPIEGYDISFLITN 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
             FHTEQMYKHKLVDFV+ FMEEIDKEISEMKLAVNARAR C+EEFLKRF
Sbjct:   121 FHTEQMYKHKLVDFVISFMEEIDKEISEMKLAVNARARTCAEEFLKRF 168

GO:0003779 "actin binding" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0042060 "wound healing" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

WB|WBGene00000204 arx-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 131/168 (77%), Positives = 154/168 (91%)

Query:     1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
             MS+TL PYL+ VRHTL AA+CLE FSSQVVERHNKPEVEV+TSKELL+TPV+++RN++E+
Sbjct:     1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60

Query:    61 VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
             VLIE S+NSVRISIA+KQ+DEIEKILCHKF RFM  RA+NF VLRRKP+ GYDISFLIT 
Sbjct:    61 VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120

Query:   121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
              HTE M+KHKLVDF+LHFM+EIDKEISEMKL++NARAR+ +EEFLKRF
Sbjct:   121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0010631 "epithelial cell migration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92352	ARPC4_SCHPO	No assigned EC number	0.6369	1.0	1.0	yes	N/A
P59998	ARPC4_HUMAN	No assigned EC number	0.8809	1.0	1.0	yes	N/A
P59999	ARPC4_MOUSE	No assigned EC number	0.8809	1.0	1.0	yes	N/A
O96625	ARPC4_DICDI	No assigned EC number	0.6607	1.0	0.9940	yes	N/A
Q148J6	ARPC4_BOVIN	No assigned EC number	0.8809	1.0	1.0	yes	N/A
P58798	ARPC4_CAEEL	No assigned EC number	0.7797	1.0	0.9940	yes	N/A
P33204	ARPC4_YEAST	No assigned EC number	0.6568	1.0	0.9824	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam05856	168	pfam05856, ARPC4, ARP2/3 complex 20 kDa subunit (A	1e-104
PTZ00278	174	PTZ00278, PTZ00278, ARP2/3 complex subunit; Provis	4e-83

>gnl|CDD|203338 pfam05856, ARPC4, ARP2/3 complex 20 kDa subunit (ARPC4)

 Score =  295 bits (758), Expect = e-104
 Identities = 124/168 (73%), Positives = 147/168 (87%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CL NF SQVVERHNKPEVEV +SKELLL P++ISR+EKE+
Sbjct: 1   MAATLRPYLDAVRRTLTAALCLRNFPSQVVERHNKPEVEVNSSKELLLNPLVISRSEKER 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
            LIE SINSVR+SI +KQADEIE+IL  KF RF+M RA+ F++LRRKP+EGYDISFLITN
Sbjct: 61  CLIEPSINSVRVSIKIKQADEIERILARKFTRFLMQRADAFVILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
            HTEQM KHKLVDF++ FMEEIDKEISEMKL++N+RARI +EEFLK+F
Sbjct: 121 EHTEQMGKHKLVDFIITFMEEIDKEISEMKLSLNSRARIVAEEFLKQF 168

This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion. Length = 168

>gnl|CDD|240342 PTZ00278, PTZ00278, ARP2/3 complex subunit; Provisional

 Score =  242 bits (619), Expect = 4e-83
 Identities = 105/172 (61%), Positives = 133/172 (77%), Gaps = 4/172 (2%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEV----RTSKELLLTPVLISRN 56
           M++T  PY   +R TL AA+CL NF SQ++ERHNKPEVE+      SKEL+L P+ I R+
Sbjct: 1   MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRS 60

Query: 57  EKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISF 116
           EKEK LIE SINSVRIS + K++DE++ I+  KF+ F+  RAE F++LRRKPI GYDISF
Sbjct: 61  EKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISF 120

Query: 117 LITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           LITNFHTE M+KHKL+DF++ FME+IDK+IS+MKL VN RARI + EF K  
Sbjct: 121 LITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKAL 172

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PTZ00278	174	ARP2/3 complex subunit; Provisional	100.0
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	100.0
KOG1876|consensus	168		100.0
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	85.78

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=100.00  E-value=9e-103  Score=635.79  Aligned_cols=168  Identities=63%  Similarity=1.033  Sum_probs=167.2

Q ss_pred             CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceec----cCCcccccccEEEeecCCceEEEecccceEEEEEEe
Q psy9053           1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEV----RTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAV   76 (168)
Q Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~----~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~i   76 (168)
                      ||+|+||||+|||+||+|||||+|||||+||||||||||+    ++|+|+||+|++|+||++|+||||||||||||||||
T Consensus         1 Ms~~l~pYl~aVr~tL~aAlcL~nF~Sq~vErhnkPEVE~~~~~~ts~elLl~pl~I~Rne~E~clIE~SiNSvRiSi~i   80 (174)
T PTZ00278          1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF   80 (174)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhcCchHHHhccCCCcEEecCCCCCCHHHhcCcEEEEEcCCceEEEEcccceEEEEEEe
Confidence            9999999999999999999999999999999999999999    999999999999999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy9053          77 KQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNAR  156 (168)
Q Consensus        77 kq~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naR  156 (168)
                      ||+||||+||+|||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|
T Consensus        81 kqaDeie~iL~~kf~~Fl~~RAe~F~ILRrkPv~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaR  160 (174)
T PTZ00278         81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR  160 (174)
T ss_pred             hhhChHHHHHHHHHHHHHHhhhhceeEEeecCcCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhcC
Q psy9053         157 ARICSEEFLKRF  168 (168)
Q Consensus       157 aR~~A~~fl~~~  168 (168)
                      ||+||++||++|
T Consensus       161 aR~~A~~fl~~f  172 (174)
T PTZ00278        161 ARIAAPEFFKAL  172 (174)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999986

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=100.00  E-value=6.8e-103  Score=635.19  Aligned_cols=168  Identities=79%  Similarity=1.185  Sum_probs=139.8

Q ss_pred             CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceecc--CCcccccccEEEeecCCceEEEecccceEEEEEEeec
Q psy9053           1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVR--TSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQ   78 (168)
Q Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~--~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq   78 (168)
                      ||+||+|||+|||+||+|||||+|||||+||||||||||++  +|||+||||++|+||++|+||||||||||||||+|||
T Consensus         1 Ms~tl~pYl~~Vr~tL~aalcL~nf~sq~vErhnkPEVE~~~~~s~elll~pl~I~Rne~E~clIE~SiNSvRvSi~ikq   80 (170)
T PF05856_consen    1 MSATLRPYLDAVRRTLTAALCLQNFPSQVVERHNKPEVEVQGPSSKELLLNPLVISRNEKEKCLIEPSINSVRVSIKIKQ   80 (170)
T ss_dssp             --TSHHHHHHHHHHHHHHHT-------SSSTT----HHHH-----CCCB---EEEESSSS-EEEEEEBSSEEEEEEE---
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhhCchhhhhhcCCCceeecCCCCHHHhcCceeeccCCCceEEEEcccceEEEEEEecc
Confidence            99999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy9053          79 ADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARAR  158 (168)
Q Consensus        79 ~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR  158 (168)
                      +||||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||
T Consensus        81 ~Deie~iL~~kf~rFl~~RAe~F~ILRRkPv~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR  160 (170)
T PF05856_consen   81 ADEIERILCHKFTRFLMQRAENFFILRRKPVEGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARAR  160 (170)
T ss_dssp             -SCHHHHHHHHHHHHHHHCTTTSTTB-SS--TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cChHHHHHHHHHHHHHHhhhhhheeeeecCcCCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy9053         159 ICSEEFLKRF  168 (168)
Q Consensus       159 ~~A~~fl~~~  168 (168)
                      ++|++||++|
T Consensus       161 ~~A~~fl~~f  170 (170)
T PF05856_consen  161 IVAEEFLKQF  170 (170)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHhcC
Confidence            9999999987

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

>KOG1876|consensus

Probab=100.00  E-value=7.6e-96  Score=588.11  Aligned_cols=168  Identities=83%  Similarity=1.224  Sum_probs=167.1

Q ss_pred             CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053           1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD   80 (168)
Q Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D   80 (168)
                      ||+||+|||.+||.||+|||||+|||||+||||||||||+++|+|+|++|++|||||+|+||||||||||||||++||+|
T Consensus         1 ms~tl~pyl~avr~tl~aal~L~nFssq~VERhnkPEVEv~ss~elll~pv~isRNe~Ek~LIE~SiNSvRiSi~vKQaD   80 (168)
T KOG1876|consen    1 MSATLRPYLTAVRHTLTAALCLENFSSQEVERHNKPEVEVKSSKELLLTPVVISRNEQEKVLIEPSINSVRISIAVKQAD   80 (168)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHhCCHHHHHhcCCCcceecCcHHHhhCceEeecccccceeEecccceEEEEEeecchH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053          81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC  160 (168)
Q Consensus        81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~  160 (168)
                      |||+||||||+||||||||+|+|||||||+||||||||||+|+|+|+||||+||+|+|||++|||||+|||++|+|||.+
T Consensus        81 EiE~IL~~KF~rFl~~RAe~F~iLRRkPv~gy~IsfLItn~hte~m~k~Klvdf~iefmeeidkeiSemkl~~n~rar~~  160 (168)
T KOG1876|consen   81 EIERILCHKFTRFLMMRAEAFFILRRKPVQGYDISFLITNFHTEQMYKHKLVDFIIEFMEEIDKEISEMKLFLNARARQV  160 (168)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeeeCCcCccchhhhhhccchHHHHhchhHHHHHHHHHHHhhhhhhhccccchhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy9053         161 SEEFLKRF  168 (168)
Q Consensus       161 A~~fl~~~  168 (168)
                      |++|++.|
T Consensus       161 ae~fl~~F  168 (168)
T KOG1876|consen  161 AEEFLKRF  168 (168)
T ss_pred             HHHHHhcC
Confidence            99999976

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=85.78  E-value=19  Score=31.32  Aligned_cols=120  Identities=21%  Similarity=0.273  Sum_probs=94.3

Q ss_pred             cccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHhh-c-c---cceeeeeeC---CcC---------
Q psy9053          48 LTPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMM-R-A---ENFIVLRRK---PIE---------  110 (168)
Q Consensus        48 l~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~-R-A---e~f~ILRrk---Pv~---------  110 (168)
                      -.|+.|-..++|-++|.++=+.|=|-+.+.-.|+-++++.+-|+.=+.. | +   .+=++|...   |.+         
T Consensus        91 ~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~APqvlfS~~~PPlEl~~~~~~~~  170 (241)
T PF04045_consen   91 EKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSRQTAPQVLFSHREPPLELRGVPGARN  170 (241)
T ss_dssp             TT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT--TTS-EEEEECSS--CGGTT-TT---
T ss_pred             CceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccCCCCCceeccCCCCChhHcCCCCccc
Confidence            4678888888999999999999999999999999999999999876631 1 1   234555543   322         


Q ss_pred             ----ccceeeeeehhH-HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Q psy9053         111 ----GYDISFLITNFH-TEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKR  167 (168)
Q Consensus       111 ----GYDISFLITn~H-~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~~  167 (168)
                          +.=|||.+.-.| ++.=...+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++-
T Consensus       171 ~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkv  232 (241)
T PF04045_consen  171 LGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKV  232 (241)
T ss_dssp             -STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                233899999999 667778889999999999888888888988999988888888763

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
1k8k_F	168	Crystal Structure Of Arp23 COMPLEX Length = 168		1e-84
3dwl_F	168	Crystal Structure Of Fission Yeast Arp2/3 Complex L		3e-61

>pdb|1K8K|F Chain F, Crystal Structure Of Arp23 COMPLEX Length = 168

Iteration: 1
 Score =  308 bits (788), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)
Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

>pdb|3DWL|F Chain F, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 168

Iteration: 1
 Score =  230 bits (586), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 138/168 (82%)
Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VR TL A++ LE FSS++VER ++PEVEV  S E+LL P+++SRNE+E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
            LIE S+NSVR SI +KQ DEIE+IL  KFM+F+M RAE+F +LRRKP++GYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           +HTE+M KHKLVDF++ FMEE+D EISEMKL +N RAR+ +E +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	2e-92
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	2e-92

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 168

 Score =  265 bits (678), Expect = 2e-92
 Identities = 107/168 (63%), Positives = 138/168 (82%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           MS+TL PYL  VR TL A++ LE FSS++VER ++PEVEV  S E+LL P+++SRNE+E+
Sbjct: 1   MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
            LIE S+NSVR SI +KQ DEIE+IL  KFM+F+M RAE+F +LRRKP++GYDISFLITN
Sbjct: 61  CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           +HTE+M KHKLVDF++ FMEE+D EISEMKL +N RAR+ +E +L  F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F Length = 168

 Score =  264 bits (677), Expect = 2e-92
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEK 60
           M++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 61  VLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITN 120
           VLIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 121 FHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           FHTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	100.0
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	100.0
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	85.36
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	81.16

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-105  Score=644.88  Aligned_cols=168  Identities=64%  Similarity=1.019  Sum_probs=165.5

Q ss_pred             CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053           1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD   80 (168)
Q Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D   80 (168)
                      ||+||||||+|||+||+|||||+|||||+||||||||||+++|||+||||++|+||++|+||||||||||||||+|||+|
T Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcl~nF~Sq~vErhnkPEVE~~~s~elll~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaD   80 (168)
T 3dwl_F            1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVD   80 (168)
T ss_dssp             --CCHHHHHHHHHHHHHHHTCCCCCCCSSSTTCCCCHHHHCCCTTTBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCchHHHhhcCCCceeccCCHhHhcCceEEeecCCceEEEEcccceEEEEEEehhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053          81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC  160 (168)
Q Consensus        81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~  160 (168)
                      |||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||+|
T Consensus        81 eie~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~  160 (168)
T 3dwl_F           81 EIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLV  160 (168)
T ss_dssp             SHHHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy9053         161 SEEFLKRF  168 (168)
Q Consensus       161 A~~fl~~~  168 (168)
                      |++||++|
T Consensus       161 A~~fl~~f  168 (168)
T 3dwl_F          161 AETYLSCF  168 (168)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999987

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=100.00  E-value=1.1e-104  Score=643.31  Aligned_cols=168  Identities=88%  Similarity=1.281  Sum_probs=165.7

Q ss_pred             CCCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccc
Q psy9053           1 MSSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQAD   80 (168)
Q Consensus         1 Ma~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~D   80 (168)
                      ||+||||||+|||+||+|||||+|||||+||||||||||+++|||+||||++|+||++|+||||||||||||||||||+|
T Consensus         1 Ma~tl~pYl~~vr~tL~aAlCL~nF~Sq~vErhnkPEVE~~~s~elLl~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~D   80 (168)
T 1k8k_F            1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQAD   80 (168)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCS
T ss_pred             CCcccchHHHHHHHHHHHHHHHhcCcHHHHhhcCCCceeecCCHHHhccceEEEecCCceEEEEcccceEEEEEEEcccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9053          81 EIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARIC  160 (168)
Q Consensus        81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~  160 (168)
                      |||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||+|
T Consensus        81 eiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~  160 (168)
T 1k8k_F           81 EIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIV  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy9053         161 SEEFLKRF  168 (168)
Q Consensus       161 A~~fl~~~  168 (168)
                      |++||++|
T Consensus       161 A~~fl~~f  168 (168)
T 1k8k_F          161 AEEFLKNF  168 (168)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHhhcC
Confidence            99999987

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.36  E-value=10  Score=33.24  Aligned_cols=118  Identities=18%  Similarity=0.247  Sum_probs=95.8

Q ss_pred             ccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHh-hc-c----cceeeeee---CCcC---------
Q psy9053          49 TPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMM-MR-A----ENFIVLRR---KPIE---------  110 (168)
Q Consensus        49 ~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~-~R-A----e~f~ILRr---kPv~---------  110 (168)
                      .|+.|...+.|-++|.++=+.|=|-+.....|+-++++.+-|+.=+. -| +    -+=+||..   -|.+         
T Consensus       155 ~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~~~~~~  234 (317)
T 3dwl_D          155 ELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQK  234 (317)
T ss_dssp             TCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSCC----
T ss_pred             CeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCCCcccc
Confidence            78899999999999999999999999999999999999999987543 22 1    22345555   3333         


Q ss_pred             ---ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy9053         111 ---GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK  166 (168)
Q Consensus       111 ---GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~  166 (168)
                         +-=|||.+.-.|++.=-+.+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++
T Consensus       235 ~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~  293 (317)
T 3dwl_D          235 GDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQK  293 (317)
T ss_dssp             ---CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHH
Confidence               22389999999998877889999999999999888888898888988877777775

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D

Probab=81.16  E-value=26  Score=30.26  Aligned_cols=118  Identities=20%  Similarity=0.295  Sum_probs=92.4

Q ss_pred             ccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHhh-cc---cceeeeeeC---CcC-----------
Q psy9053          49 TPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMM-RA---ENFIVLRRK---PIE-----------  110 (168)
Q Consensus        49 ~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~-RA---e~f~ILRrk---Pv~-----------  110 (168)
                      .|+.|...+.|-.+|+++=+.|=|=+.....|+-+.++.+-|+.=++. |-   .+=+||...   |.+           
T Consensus       140 ~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~~~~APqvlfs~~~PPlEL~~~~~~~~~n  219 (300)
T 1k8k_D          140 NRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDN  219 (300)
T ss_dssp             CCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTT
T ss_pred             ceEEeecCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhccCCCCceecCCCCCChHHcCCccccCCC
Confidence            358888888899999999999999999999999999999999875542 21   222344332   222           


Q ss_pred             ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy9053         111 GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK  166 (168)
Q Consensus       111 GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~  166 (168)
                      +-=|||.+.-.|++.=.+.+-|+.|.+|=.-+-=-|--=|--+-+|=|.=.++|++
T Consensus       220 ~gyVTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flk  275 (300)
T 1k8k_D          220 IGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK  275 (300)
T ss_dssp             EEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            23399999999997667789999999998888877877787888888877777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1k8kf_	167	d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos ta	1e-105

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 167

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  296 bits (760), Expect = e-105
 Identities = 147/167 (88%), Positives = 157/167 (94%)

Query: 2   SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKV 61
           ++TL PYL  VR TL AA+CLENFSSQVVERHNKPEVEVR+SKELLL PV ISRNEKEKV
Sbjct: 1   TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKV 60

Query: 62  LIEGSINSVRISIAVKQADEIEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNF 121
           LIEGSINSVR+SIAVKQADEIEKILCHKFMRFMMMRAENF +LRRKP+EGYDISFLITNF
Sbjct: 61  LIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNF 120

Query: 122 HTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLKRF 168
           HTEQMYKHKLVDFV+HFMEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 121 HTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	81.53

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-102  Score=625.13  Aligned_cols=167  Identities=88%  Similarity=1.280  Sum_probs=165.2

Q ss_pred             CCccccHHHHHHHHHHHhhhccccchhhhhhcCcCceeccCCcccccccEEEeecCCceEEEecccceEEEEEEeeccch
Q psy9053           2 SSTLMPYLKVVRHTLNAAMCLENFSSQVVERHNKPEVEVRTSKELLLTPVLISRNEKEKVLIEGSINSVRISIAVKQADE   81 (168)
Q Consensus         2 a~tl~pYl~~Vr~tL~aAlcL~nF~sq~vErhnkPEVE~~~s~elLl~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~De   81 (168)
                      ++||||||+|||+||+|||||+|||||+||||||||||+++|+|+|++|++|+||++|+||||||||||||||++||+||
T Consensus         1 s~~L~PYl~aVr~tL~aalcL~nf~Sq~vErhnkPEVE~~~s~elll~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~De   80 (167)
T d1k8kf_           1 TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADE   80 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCCCCCCCSSSTTCCCCHHHHCCCGGGBCCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhhCchhhHhhcCCCceeecCChhhhcccEEEEEcCCceEEEEcccceEEEEEEecccch
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccceeeeeeCCcCccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH
Q psy9053          82 IEKILCHKFMRFMMMRAENFIVLRRKPIEGYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICS  161 (168)
Q Consensus        82 iE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A  161 (168)
                      ||+||+|||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||+|||++|+|||++|
T Consensus        81 ie~iL~~kf~~Fl~~rae~F~ILRrkPi~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~raR~~A  160 (167)
T d1k8kf_          81 IEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVA  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhceeeeecCcCCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcC
Q psy9053         162 EEFLKRF  168 (168)
Q Consensus       162 ~~fl~~~  168 (168)
                      ++||++|
T Consensus       161 e~fl~~f  167 (167)
T d1k8kf_         161 EEFLKNF  167 (167)
T ss_dssp             HHHHTC-
T ss_pred             HHHhhcC
Confidence            9999987

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.53  E-value=9  Score=28.92  Aligned_cols=118  Identities=21%  Similarity=0.300  Sum_probs=92.1

Q ss_pred             ccEEEeecCCceEEEecccceEEEEEEeeccchHHHHHHHHHHHHHhh--cc--cceeeeee---CCcC-----------
Q psy9053          49 TPVLISRNEKEKVLIEGSINSVRISIAVKQADEIEKILCHKFMRFMMM--RA--ENFIVLRR---KPIE-----------  110 (168)
Q Consensus        49 ~Pl~I~Rne~E~~lIE~SiNSvRVSi~ikq~DeiE~iL~~kf~rFl~~--RA--e~f~ILRr---kPv~-----------  110 (168)
                      ++++|--.++|-.+|+++=+.|=|=+...-.|+-+.++.+-|+.=++.  |+  .+=+||..   .|.+           
T Consensus        20 ~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~~~~APqvl~s~~~PPlel~~~~~~~~~n   99 (164)
T d1k8kd2          20 NRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDN   99 (164)
T ss_dssp             CCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGTCTTSCEEEEEESSCCGGGTTTTCCCSTT
T ss_pred             ceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcccCCCCccccCCCCCchHhcCCCcccCCC
Confidence            445555347999999999999999999999999999999999886643  21  23355554   3322           


Q ss_pred             ccceeeeeehhHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy9053         111 GYDISFLITNFHTEQMYKHKLVDFVLHFMEEIDKEISEMKLAVNARARICSEEFLK  166 (168)
Q Consensus       111 GYDISFLITn~H~e~m~k~kLidFIi~FmeeidkeIsemKl~~naRaR~~A~~fl~  166 (168)
                      +--|||.+--.|++.=-+.+.|+.|.+|=.-+-=-|.-=|--+-+|=|.=-++|++
T Consensus       100 ~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flk  155 (164)
T d1k8kd2         100 IGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK  155 (164)
T ss_dssp             EEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34589999999998877789999999999988877877777777888777777775